Citrus Sinensis ID: 006115

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEccHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccEEEEcccccEEEEcccccHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEccccEEccHHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHccccccHEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPceedtkkwaysnghagSFLELCSLVQLQNYILSELKNAAERNKlrgfehikgvildprpfdmERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERnklrgfehikgvildprpfdMERDLVTATLKKKRNKLLIYYQVEIdqlyeklapgrr
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE*******
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL**K******
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered Region (DISPRO)
*KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	660	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.993	0.993	0.693	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.990	0.981	0.509	0.0
Q9T009	666	Long chain acyl-CoA synth	no	no	0.996	0.987	0.503	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.986	0.978	0.506	0.0
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.980	0.972	0.471	1e-176
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.916	0.863	0.406	1e-117
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.915	0.862	0.390	1e-116
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.971	0.952	0.350	1e-113
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.913	0.904	0.373	1e-110
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.913	0.882	0.358	1e-107

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/656 (69%), Positives = 549/656 (83%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct: 541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID++Y KLA
Sbjct: 601 AEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDEMYRKLA 656

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/654 (50%), Positives = 459/654 (70%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
           +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y+ +
Sbjct: 605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI 658

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/662 (50%), Positives = 447/662 (67%), Gaps = 4/662 (0%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct: 545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query: 602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 657
           + NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I ++Y    E LA 
Sbjct: 605 KENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHEMYKTTKESLAS 664

Query: 658 GR 659
           G+
Sbjct: 665 GQ 666

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/652 (50%), Positives = 449/652 (68%), Gaps = 1/652 (0%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query: 543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
           E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct: 546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query: 603 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
             KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID++Y+K
Sbjct: 606 DKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEIDEMYKK 657

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  619 bits (1597), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 306/649 (47%), Positives = 420/649 (64%), Gaps = 2/649 (0%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
            + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
           VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct: 551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query: 606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
           L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY +
Sbjct: 611 LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  423 bits (1087), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/622 (40%), Positives = 347/622 (55%), Gaps = 17/622 (2%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT-GIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E       + G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
           V EFL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
           +  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG 575
           KN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEG 609

Query: 576 -HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLK 634
              G   ELC+  +++  +LS++       +LRGFE  K V L   PF +E  L+T T K
Sbjct: 610 IKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFK 669

Query: 635 KKRNKLLIYYQVEIDQLYEKLA 656
            KR +   Y+   I  +Y++L 
Sbjct: 670 IKRPQAKEYFAEAITNMYKELG 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/623 (39%), Positives = 349/623 (56%), Gaps = 19/623 (3%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
           +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
            +FLR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+ 
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491

Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551

Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG-- 575
           + K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K WA S G  
Sbjct: 552 IFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIK 611

Query: 576 --HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL 633
             H G   +LC+  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+T T 
Sbjct: 612 YEHLG---QLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTF 668

Query: 634 KKKRNKLLIYYQVEIDQLYEKLA 656
           K KR +   Y+   I ++Y ++A
Sbjct: 669 KIKRPQAKAYFAEAISKMYAEIA 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/657 (35%), Positives = 367/657 (55%), Gaps = 16/657 (2%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           YYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E +   
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
           +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L ++ 
Sbjct: 556 SEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDII 615

Query: 599 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
              +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ EI +LY KL
Sbjct: 616 KNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 350/624 (56%), Gaps = 21/624 (3%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
           PL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453

Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
           EM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW- 570
           IDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K  
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLF 573

Query: 571 --AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDL 628
              Y      +   L    +L   ILS     A   KL GFE +K + ++  PF  E +L
Sbjct: 574 ASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNL 633

Query: 629 VTATLKKKRNKLLIYYQVEIDQLY 652
           +T + K KR +L   YQ  ID LY
Sbjct: 634 LTPSFKPKRPQLKERYQTIIDTLY 657

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/624 (35%), Positives = 353/624 (56%), Gaps = 21/624 (3%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
             E   PL++ +       K   +  G  + ++    D L F K++  LGGR+R++++G 
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420

Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA 571
           IDRKKN+ K++QGEY+A E +EN+Y  +  +  I+V+G+SL+S LV VVVP  +    +A
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFA 597

Query: 572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 631
              G  GSF ELC    ++  IL +L+   + + L+ FE +K + L P PF +E  L+T 
Sbjct: 598 AKLGVKGSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTP 657

Query: 632 TLKKKRNKLLIYYQVEIDQLYEKL 655
           TLK KR +L  Y++ +ID LYE +
Sbjct: 658 TLKAKRGELSKYFRTQIDSLYEHI 681

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	660
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.998	0.998	0.793	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.998	0.990	0.780	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.996	0.769	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.993	0.990	0.768	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.992	0.989	0.764	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.990	0.979	0.740	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.993	0.993	0.754	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.992	0.758	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.992	0.740	0.0
357442179	686	Annotation was added to scaffolds in Nov	0.990	0.953	0.707	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/659 (79%), Positives = 584/659 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS K ML+AVV   EE+TKKWAY NG   SF  LCSL QL  Y+LSELK+ 
Sbjct: 541 IVEDIWVYGDSSKPMLIAVVALNEENTKKWAYLNGFLDSFSALCSLDQLHEYVLSELKST 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR 659
           AERNKLRGFE IKG IL+ RPFDMERDLVTATLKKKRNKLL YYQ+EIDQLY+ L   R
Sbjct: 601 AERNKLRGFERIKGAILESRPFDMERDLVTATLKKKRNKLLSYYQLEIDQLYKTLGGKR 659

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/662 (78%), Positives = 586/662 (88%), Gaps = 3/662 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY 
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 597
             PI+EDIW+YGDS KSMLVAVVV  EE+TK WAY NGH GSF ELCSL QLQ  +LSEL
Sbjct: 543 NTPIVEDIWIYGDSCKSMLVAVVVLHEENTKSWAYLNGHMGSFTELCSLHQLQKLVLSEL 602

Query: 598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 657
           K  AERNKL+GFEHIKGVIL+  PFD+E+DLVTATLKKKRNKL+ +Y+VEID+LY+KLA 
Sbjct: 603 KTTAERNKLKGFEHIKGVILESCPFDIEKDLVTATLKKKRNKLVSHYRVEIDELYQKLAE 662

Query: 658 GR 659
           GR
Sbjct: 663 GR 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/660 (76%), Positives = 579/660 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY  A 
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE+TKKWA  NGH GS  ELCSL  L +Y+LSELK A
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPHEENTKKWADLNGHKGSLSELCSLNLLHSYVLSELKAA 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR 660
           AE +KLRGFEHIKGVIL+ R F+ E+DLVT TLKK+R+K+L +YQ +ID+LY  L  GR 
Sbjct: 601 AELSKLRGFEHIKGVILEARLFEAEQDLVTPTLKKRRDKMLKHYQAKIDELYANLGEGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/656 (76%), Positives = 578/656 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEEITKKWAFSNGHIAPFSKLCSLDQLKKHVLSELKVT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID +Y  L+
Sbjct: 601 AERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEIDDVYRSLS 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/655 (76%), Positives = 576/655 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEETTKKWAFSNGHMAPFSKLCSLDQLKKHVLSELKMT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
           AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID+LY  L
Sbjct: 601 AERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEIDELYRSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/660 (74%), Positives = 571/660 (86%), Gaps = 6/660 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LYK KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           +FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540

Query: 535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL 594
           VY + PI+ED+WVYG+S KS+LVAVVVP EE TKKWAY+NG  GSF ELCSL + + Y+L
Sbjct: 541 VYGITPIVEDVWVYGNSFKSVLVAVVVPNEEITKKWAYTNGFVGSFSELCSLDEFKKYVL 600

Query: 595 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
           SELK  AERNKL+GFE IKGVILDP PFDMERDLVTATLKK+RN +L YYQVEID++Y++
Sbjct: 601 SELKLTAERNKLKGFEQIKGVILDPHPFDMERDLVTATLKKRRNNMLKYYQVEIDEVYQR 660

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/656 (75%), Positives = 570/656 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF +LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQLKKYVLSELKLT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           AERNKLRGFEHIKGVIL+P  FDMERDLVTATLKKKRNKLL YYQVEID++Y+ L 
Sbjct: 601 AERNKLRGFEHIKGVILEPHEFDMERDLVTATLKKKRNKLLKYYQVEIDEIYQSLT 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/655 (75%), Positives = 570/655 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF  LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEVANKWAYSNGHIASFPILCSLDQLKKYVLSELKLT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
           AERNKLRGFEHIKGVIL+P+ FDMERDLVTATLKKKRNKLL YYQVEID+LY+ L
Sbjct: 601 AERNKLRGFEHIKGVILEPQEFDMERDLVTATLKKKRNKLLKYYQVEIDELYQSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/656 (74%), Positives = 564/656 (85%), Gaps = 1/656 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
           YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY + 
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540

Query: 540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599
           PI+EDIW+YG+S KSMLVAVVV  EE+TKKWA SNG   SF ELC L QL++Y+LSEL +
Sbjct: 541 PIVEDIWIYGNSFKSMLVAVVVLHEENTKKWANSNGFLCSFSELCPLEQLRHYVLSELTS 600

Query: 600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
            AERNKL+ FE+IKGV+L+ RPFD+E+DLVTATLKKKRN LL +Y+V+I+  Y+ L
Sbjct: 601 TAERNKLKRFEYIKGVVLELRPFDIEKDLVTATLKKKRNNLLKHYEVQINAEYKNL 656

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442179|ref|XP_003591367.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355480415|gb|AES61618.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/660 (70%), Positives = 554/660 (83%), Gaps = 6/660 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEGKEGK+G  SVGPVYRNLL+ N FP +D D  +AWDIFS SV+K+P NRM
Sbjct: 23  MKSFSVKVEEGKEGKNGMLSVGPVYRNLLSQNEFPPMDPDFTSAWDIFSTSVKKHPQNRM 82

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPYVWKTYKE Y+EVLQI SAL+A GA+ G ++GIYG+NCPQW+ AMEA
Sbjct: 83  LGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A + ICVPLYDTLG GA+NFI+DHAEID+VFVQDKKVKELL+ DC+S++RL+ +V FT
Sbjct: 143 CSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFT 202

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A   GIKPY+W++F+  GK N   I PP   +ICTIMYTSGTSGDPKGVVL
Sbjct: 203 SLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSINPPLAHDICTIMYTSGTSGDPKGVVL 262

Query: 241 THETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE +   V G+DLF++QFEDK MTVDDVYLSFLPLAHILDR IEEYFFR GASVGYYHG
Sbjct: 263 THENVLALVRGMDLFMEQFEDKVMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHG 322

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK--YKLAWMN 357
           DLNAL +DL ELKPTL AGVPRVFEK++EG+    E     +    ++ +     L WMN
Sbjct: 323 DLNALLEDLSELKPTLFAGVPRVFEKVYEGMVTYQESSGTTKSSEENSFWHALQLLGWMN 382

Query: 358 MGYKQREASPLADLLAFRK-VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
            GY QREAS LADLLAFRK VKARLGGR+RL+ISGGA LS+E+EEFLRVT CAF+ QGYG
Sbjct: 383 KGYTQREASRLADLLAFRKVVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYG 442

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
           LTETCGPTT+ FPDEMCM+G  G V+V++ELRLEEVP+MGY+PL  PPCGE+CVRGK++F
Sbjct: 443 LTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVF 502

Query: 477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +GY+KNP+LT+E+IIDGWFHTGDIG++LPNG+++IIDRKKNL+K+SQGEY+ALEYLENVY
Sbjct: 503 TGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIIRIIDRKKNLVKLSQGEYIALEYLENVY 562

Query: 537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
            + PI+EDIWVYG+S KSMLVAVVVP E+ T KWAY+NGH  SF +LCSL QL+ Y+LSE
Sbjct: 563 TITPIVEDIWVYGNSFKSMLVAVVVPNEDVTNKWAYANGHISSFSKLCSLDQLKKYVLSE 622

Query: 597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           LK+ A RNK  GFEHIKGVILDP PFDMERDLVTATLKKKRN +L YY+V+ID+LY+ L 
Sbjct: 623 LKSTAVRNK--GFEHIKGVILDPLPFDMERDLVTATLKKKRNNMLKYYKVDIDELYKSLT 680

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	660
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.993	0.993	0.693	2.1e-258
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.990	0.981	0.509	1e-185
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.996	0.987	0.503	2.3e-181
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.986	0.978	0.506	9e-180
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.980	0.972	0.471	3.5e-162
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.918	0.864	0.411	2.2e-114
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.925	0.872	0.390	1e-109
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.968	0.949	0.353	4.9e-108
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.910	0.901	0.378	1.6e-104
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.924	0.866	0.362	1.6e-104

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2487 (880.5 bits), Expect = 2.1e-258, P = 2.1e-258
 Identities = 455/656 (69%), Positives = 549/656 (83%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
             KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct:   481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query:   541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
             +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct:   541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query:   601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
             AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID++Y KLA
Sbjct:   601 AEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDEMYRKLA 656

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 333/654 (50%), Positives = 459/654 (70%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct:   485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct:   545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query:   602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
             +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y+ +
Sbjct:   605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI 658

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1760 (624.6 bits), Expect = 2.3e-181, P = 2.3e-181
 Identities = 333/662 (50%), Positives = 447/662 (67%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct:   485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct:   545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query:   602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 657
             + NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I ++Y    E LA 
Sbjct:   605 KENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHEMYKTTKESLAS 664

Query:   658 GR 659
             G+
Sbjct:   665 GQ 666

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
 Identities = 330/652 (50%), Positives = 449/652 (68%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
              DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query:   543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
             E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct:   546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query:   603 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
               KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID++Y+K
Sbjct:   606 DKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEIDEMYKK 657

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 306/649 (47%), Positives = 420/649 (64%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
              + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct:   491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query:   547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
             VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct:   551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query:   606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
             L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY +
Sbjct:   611 LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 259/630 (41%), Positives = 358/630 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
             I  A++    L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422

Query:   390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
             SG +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++
Sbjct:   423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480

Query:   449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
             L +VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP 
Sbjct:   481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540

Query:   507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEED 566
             G +KIIDRKKN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    + 
Sbjct:   541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDV 600

Query:   567 TKKWAYSNGHAGSFL-ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDME 625
              K WA S G  G  L ELC+  +++  +LS++       +LRGFE  K V L   PF +E
Sbjct:   601 LKSWAASEGIKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLE 660

Query:   626 RDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
               L+T T K KR +   Y+   I  +Y++L
Sbjct:   661 NGLLTPTFKIKRPQAKEYFAEAITNMYKEL 690

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 245/627 (39%), Positives = 352/627 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L
Sbjct:    77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F
Sbjct:   136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
                + +  LLS        +R++V           +   TG+   S+ + L  G+ +   
Sbjct:   196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254

Query:   214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
               PP+P +I TI YTSGT+G PKGVVLTH  +   V+G  +  + F       DVY+S+L
Sbjct:   255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309

Query:   274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
             PLAHI +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A
Sbjct:   310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query:   334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
             ++    +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +
Sbjct:   370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426

Query:   394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
             PLS +V +FLR+     + +GYG+TET C  + +   D +   G  G  +   E++L +V
Sbjct:   427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484

Query:   453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVK 510
             PEM Y+  D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +K
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query:   511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW 570
             IIDRKKN+ K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K W
Sbjct:   545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query:   571 AYSNGHAGSFL-ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV 629
             A S G     L +LC+  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+
Sbjct:   605 AASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLL 664

Query:   630 TATLKKKRNKLLIYYQVEIDQLYEKLA 656
             T T K KR +   Y+   I ++Y ++A
Sbjct:   665 TPTFKIKRPQAKAYFAEAISKMYAEIA 691

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 233/659 (35%), Positives = 369/659 (55%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
             SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E + 
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553

Query:   537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
               +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L +
Sbjct:   554 VKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDD 613

Query:   597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
             +    +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ EI +LY KL
Sbjct:   614 IIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 237/626 (37%), Positives = 355/626 (56%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
               +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG
Sbjct:   337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392

Query:   392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
              APL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +
Sbjct:   393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451

Query:   452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
             VPEM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG +
Sbjct:   452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511

Query:   510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK 569
              IIDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K
Sbjct:   512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQK 571

Query:   570 -WA--YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER 626
              +A  Y      +   L    +L   ILS     A   KL GFE +K + ++  PF  E 
Sbjct:   572 LFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEEN 631

Query:   627 DLVTATLKKKRNKLLIYYQVEIDQLY 652
             +L+T + K KR +L   YQ  ID LY
Sbjct:   632 NLLTPSFKPKRPQLKERYQTIIDTLY 657

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 229/632 (36%), Positives = 355/632 (56%)

Query:    30 ASNG-FPS-VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVL 87
             + NG F S +  ++ T +  F            LGWR  +     PY W  Y E      
Sbjct:    88 SKNGKFVSYITENVRTLYQTFREGAYASNNGPCLGWRETLTS---PYQWINYDEALLRAK 144

Query:    88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
                + + A GA P   +GIY  N P+W+   + C + SL+ VPLYDTLGP A  FI+   
Sbjct:   145 NFGAGMLALGARPKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQT 204

Query:   148 EIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 206
             ++  V V+D  K   LL    RS   L+++V    +     E A   GI+ +S+ +   L
Sbjct:   205 DMQVVIVEDDGKAAMLLEKAPRS---LKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKL 261

Query:   207 G-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMT 264
             G K N  E+ PP   ++CT+ YTSGT+G+PKGV+LTH  +   V+GV  + L   + ++ 
Sbjct:   262 GAKGNHPEV-PPTAEDLCTVCYTSGTTGNPKGVMLTHGNV---VAGVCSVILQMGDHRIR 317

Query:   265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE 324
               DV +SFLPLAH+ +R  E   +  G  VG+Y GD+  L +DL  LKPT++  VPR+  
Sbjct:   318 AGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKMLKPTVMPAVPRLLN 377

Query:   325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
             ++++ I+  +     L+R +F+   + K   +  G  +R      D L F+KV    GG 
Sbjct:   378 RVYDKIQNDISA-SGLKRGLFNMAMRAKEKEIARGVLRRNGC--WDKLVFKKVHQAFGGN 434

Query:   385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
             LRL++ G APL+  V  F+R      +++GYG TE  G  T+    +        PVS  
Sbjct:   435 LRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQGDHVPNHVGPPVSC- 493

Query:   445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
             + ++L +VPEM Y    +   GEVCVRG  +F GYYK+P+ T E+I  +GW HTGD+G  
Sbjct:   494 NAVKLVDVPEMEY--FANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMW 551

Query:   504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPC 563
             LPNG ++IIDR+K++ K+SQGEY+  E +EN+Y ++  +  ++VYG+SLKS ++AVVVP 
Sbjct:   552 LPNGTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPD 611

Query:   564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD 623
              +  K+WA  N   G+   LC+   ++  I++++ N  +++ L+ FE +K + L P PF 
Sbjct:   612 TDVLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNWGKQSGLKSFEQVKDIYLHPDPFS 671

Query:   624 MERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
             ++  L+T T K KR +L  Y++ +++ +Y+ L
Sbjct:   672 VQNGLLTPTFKAKRPQLKSYFKPQLEDMYKHL 703

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.3472	0.9166	0.8857	yes	no
P41216	ACSL1_MOUSE	6, ., 2, ., 1, ., 3	0.3611	0.9121	0.8612	yes	no
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.6935	0.9939	0.9939	yes	no
P30624	LCF1_YEAST	6, ., 2, ., 1, ., 3	0.3002	0.9106	0.8585	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3500	0.9712	0.9524	yes	no
Q9ULC5	ACSL5_HUMAN	6, ., 2, ., 1, ., 3	0.3589	0.9136	0.8828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028146001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.900
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	660
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-154
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-119
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-114
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-104
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-88
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-86
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-77
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	7e-75
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-55
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-55
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-53
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	5e-44
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-43
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-40
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-37
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	4e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-35
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-32
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-32
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-31
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-31
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-26
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-26
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	8e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-23
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-23
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-22
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	6e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-22
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-21
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-20
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-19
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	6e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-17
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-17
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-17
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-16
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	6e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	8e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-15
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-15
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	7e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-13
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	7e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-11
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	7e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-10
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-10
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-09
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-08
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	9e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	3e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	6e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	8e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	6e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.003
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1309 bits (3390), Expect = 0.0
 Identities = 518/659 (78%), Positives = 584/659 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY   P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS KSMLVAVVVP EE+T KWA  NG  GSF ELCSL +L+ +ILSELK+ 
Sbjct: 541 IVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKST 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR 659
           AE+NKLRGFE+IKGVIL+ +PFD+ERDLVTATLKK+RN LL YYQVEID++Y KLA  R
Sbjct: 601 AEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKLAEKR 659

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  775 bits (2002), Expect = 0.0
 Identities = 334/654 (51%), Positives = 442/654 (67%), Gaps = 5/654 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  Y YKL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           Y+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y  
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
            P+I  IWVYG+S +S LVAVVVP  +  + WA +N   G F  LC  ++ + YIL EL 
Sbjct: 539 CPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELN 598

Query: 599 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652
           +  ++ +LRGFE +K + L+P PFD+ERDL+T T K KR +LL YY+  IDQLY
Sbjct: 599 STGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  748 bits (1932), Expect = 0.0
 Identities = 341/661 (51%), Positives = 463/661 (70%), Gaps = 4/661 (0%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ + YK   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S LVA+  P ++  ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 657
           +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y    EKLA 
Sbjct: 605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTTNEKLAS 664

Query: 658 G 658
            
Sbjct: 665 R 665

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  738 bits (1909), Expect = 0.0
 Identities = 275/583 (47%), Positives = 365/583 (62%), Gaps = 46/583 (7%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ I VYGD
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436

Query: 551 SLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKLRGF 609
           SLKS LVA+VVP E+  +KWA  NG   G F ELC+  +L+  IL +L    + N L+GF
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGF 496

Query: 610 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652
           E +K + L P PF  E  L+T T K KR +L   Y+ EID++Y
Sbjct: 497 EIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  545 bits (1406), Expect = 0.0
 Identities = 258/643 (40%), Positives = 365/643 (56%), Gaps = 24/643 (3%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
            VPR++ +I++GI  A++E   L+ R+F+A Y  K   +  G   +  SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370

Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
           KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
             G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            HTGDIG  LP G +KIIDRKKN+ K++QGEY+A E +ENVY     +   +VYGDSL S
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNS 548

Query: 555 MLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK 613
            LVAVVV   E  K WA S G       +LC+  +++  +L+++       +LRGFE  K
Sbjct: 549 SLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAK 608

Query: 614 GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
            V L P PF +E  L+T T K KR +   Y+   I  +Y +LA
Sbjct: 609 AVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAELA 651

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  458 bits (1180), Expect = e-154
 Identities = 214/599 (35%), Positives = 316/599 (52%), Gaps = 46/599 (7%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA--GSFLELCSLVQLQNYILS 595
            +P+IE I V GD  K  LVA++VP  +  +KWA S       S  EL    +L   IL 
Sbjct: 494 KSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552

Query: 596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
            +       +L GFE IK  +L P+ F  E   +T TLK KR+ +L  Y+ EI+ +Y +
Sbjct: 553 RVNKGN--KRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  363 bits (933), Expect = e-119
 Identities = 178/575 (30%), Positives = 263/575 (45%), Gaps = 125/575 (21%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
           E++  DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I    
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAV 364

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCSLVQLQNYILSELKNAAERNK 605
           V GD     L A++V   E  +KWA  +G    ++ +L    +++  I  E+   A    
Sbjct: 365 VVGDDRPY-LTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEV-EEANARL 422

Query: 606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 640
            R  E IK  +L P+ F +E   +T T+K +R  +
Sbjct: 423 AR-VEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  358 bits (921), Expect = e-114
 Identities = 225/662 (33%), Positives = 338/662 (51%), Gaps = 64/662 (9%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
                D   LKPTL+  VP + +++ +G++K ++    L +++FD  YK +LA +     
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G    E   L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
           ETC   T    D+   VG  GP      ++L    E GY   D P P GE+ + G ++  
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514

Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
           GY+KN + T E   +D     WF+TGDIGQ  P+G ++IIDRKK+++K+  GEYV+L  +
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574

Query: 533 ENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQN 591
           E    V+P +++I V+ D   S  VA+VVP ++  +KWA   G    +F ELC   +   
Sbjct: 575 EAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVK 634

Query: 592 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 651
            +   L  AA+  +L  FE    + L P P+  E  LVTA LK KR ++   ++ ++ +L
Sbjct: 635 EVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKL 694

Query: 652 YE 653
           YE
Sbjct: 695 YE 696

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  331 bits (852), Expect = e-104
 Identities = 183/602 (30%), Positives = 281/602 (46%), Gaps = 50/602 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 535 VYCVAPII--EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592
           +Y    ++    + V     +S + A+V+  E     +A  +G  G +  +    + Q  
Sbjct: 578 LYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKK 637

Query: 593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652
               L+  A     + FE ++ V +    +  E  ++TA +K KR  +   Y   I +L+
Sbjct: 638 ATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELF 697

Query: 653 EK 654
             
Sbjct: 698 AD 699

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  279 bits (717), Expect = 8e-88
 Identities = 125/478 (26%), Positives = 194/478 (40%), Gaps = 74/478 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           DGW    TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + +  V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  278 bits (714), Expect = 3e-86
 Identities = 170/592 (28%), Positives = 263/592 (44%), Gaps = 111/592 (18%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R   L SGYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588
              +EN+    P +E + V G  L    VA+VV  E        ++      +E  SL Q
Sbjct: 407 PAPIENLLSANPHVEQVCVVGSGLPQP-VALVVLSEA-------ADPLEREEVE-ESLQQ 457

Query: 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 640
               + SEL++          E +  +++    + +E  L+T TLK KRN +
Sbjct: 458 TLAKVNSELES---------HERLSALVVVKEAWTVENGLLTPTLKIKRNVV 500

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  255 bits (653), Expect = 4e-77
 Identities = 136/497 (27%), Positives = 204/497 (41%), Gaps = 76/497 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
              DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V    P + +  V 
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVV 455

Query: 549 G---DSLKSMLVAVVVP 562
           G   +     +VAVVV 
Sbjct: 456 GVPDERWGERVVAVVVL 472

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  251 bits (642), Expect = 7e-75
 Identities = 178/621 (28%), Positives = 272/621 (43%), Gaps = 82/621 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 534 N-VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-----ELCSLV 587
             V    PII +  + GD  K + + + + CE D +      G     L     E C L+
Sbjct: 460 EAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE-----TGEPLDNLTEEAIEFCRLL 514

Query: 588 QLQNYILSEL----------------KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 631
                 +SE+                K   +       +  K VIL  + F +    +  
Sbjct: 515 GSHATTVSEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGELGP 573

Query: 632 TLKKKRNKLLIYYQVEIDQLY 652
           T+K KR  +   Y+ EID+LY
Sbjct: 574 TMKLKRPVVAKKYKDEIDKLY 594

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (498), Expect = 2e-55
 Identities = 125/489 (25%), Positives = 185/489 (37%), Gaps = 125/489 (25%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP                
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                      LY                     LL   + K      LRL ISGGAPL 
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255

Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
            EV E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           E+   P  +   GE+ VRG  +  GY+  P+ T E + DGW  TGDIG +  +G   I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369

Query: 514 RKKNLIKIS 522
           RKK++I + 
Sbjct: 370 RKKDMIIVG 378

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  196 bits (501), Expect = 2e-55
 Identities = 138/524 (26%), Positives = 200/524 (38%), Gaps = 119/524 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           + VRG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428

Query: 528 -ALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
              E LE+     P + ++ V G   +      VAVVV     T
Sbjct: 429 YPRE-LEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT 471

Length = 521

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  194 bits (495), Expect = 5e-53
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 16/368 (4%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Query: 543 EDIWVYGD 550
               VYGD
Sbjct: 620 NFCVVYGD 627

Length = 746

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  173 bits (441), Expect = 3e-47
 Identities = 128/516 (24%), Positives = 203/516 (39%), Gaps = 93/516 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T+E+I  DGW HTGDIG    +G   I+DRKK LIK  +G  V    LE V    P + 
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421

Query: 544 DIWVYG--DSLKSML-VAVVVP------CEEDTKKW 570
           D  V G  D +   L  A VV        E++ K +
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDY 457

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  164 bits (418), Expect = 1e-44
 Identities = 131/498 (26%), Positives = 197/498 (39%), Gaps = 126/498 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + ++ V
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369

Query: 548 YG---DSLKSMLVAVVVP 562
                + L   + AVVVP
Sbjct: 370 VAMPDERLGERVCAVVVP 387

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  160 bits (407), Expect = 5e-44
 Identities = 105/355 (29%), Positives = 150/355 (42%), Gaps = 63/355 (17%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP +++ +           
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           +    R       Y L+                              LRL+ISGG PLS 
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R 
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS-MLVAVVVPCEEDT 567
           K+LIK+  GE V    +E+V    P + +  V G  D  +   +VA VV      
Sbjct: 247 KDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGAD 300

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  163 bits (415), Expect = 1e-43
 Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
           A  L+ L              RL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           YY +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (397), Expect = 5e-41
 Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           +       GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421

Query: 518 LIKISQGEYVALEYLEN 534
           +IK S GE+++   LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  150 bits (382), Expect = 7e-40
 Identities = 99/367 (26%), Positives = 139/367 (37%), Gaps = 84/367 (22%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G 
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +   G + ++ R+ +LI IS GE +  E +E V    P +E+  V G   D      VA 
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAF 356

Query: 560 VVPCEED 566
           VVP ++ 
Sbjct: 357 VVPNDDP 363

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  152 bits (386), Expect = 1e-39
 Identities = 102/364 (28%), Positives = 155/364 (42%), Gaps = 81/364 (22%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQI 503
            E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTGD+G  
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDIWVYGDSLKSMLVAVVVP 562
             +G + I+DR K LIK     Y         + VAP  +E + +   S   +  A V+P
Sbjct: 397 DEDGYLFIVDRLKELIK-----Y-------KGFQVAPAELEALLL---SHPEIADAAVIP 441

Query: 563 CEED 566
             ++
Sbjct: 442 YPDE 445

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  143 bits (362), Expect = 1e-37
 Identities = 93/375 (24%), Positives = 148/375 (39%), Gaps = 89/375 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +   ++       +    +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNV---LNNGYSIARRL--GLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241

Query: 507 GVVKIIDRKKNLIKISQGEYVA-LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           G ++I+ R K++I I  GE +   E +E      P + +  V G   + L  ++ A VV 
Sbjct: 242 GYLRIVGRIKDMI-IRGGENIYPAE-IEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVL 299

Query: 563 ------CEEDTKKWA 571
                  EE+   + 
Sbjct: 300 KPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  143 bits (363), Expect = 4e-37
 Identities = 133/503 (26%), Positives = 185/503 (36%), Gaps = 147/503 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPII 542
           T E+   DGWF TGD+G +  +G  +I+ RK + I I  G Y   ALE +E      P +
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEALLEHPGV 363

Query: 543 EDIWVYG---DSLKSMLVAVVVP 562
            ++ V G         +VAVVVP
Sbjct: 364 AEVAVIGVPDPDWGEAVVAVVVP 386

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  136 bits (344), Expect = 3e-35
 Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G +  
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235

Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +G + I+DRKK++I IS G        EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  130 bits (328), Expect = 2e-32
 Identities = 129/511 (25%), Positives = 190/511 (37%), Gaps = 132/511 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T D V L+FLPL H+                G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
             +F TGD+G I   G    +DR K +I +S G  V    +E +    P + ++ V G  
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCVIGRP 367

Query: 550 DSLKSMLV-AVVVP--------CEEDTKKWA 571
           D  +  +V A VV          EED  +W 
Sbjct: 368 DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 6e-32
 Identities = 108/499 (21%), Positives = 173/499 (34%), Gaps = 128/499 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
               GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE + +Y
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETV-LY 363

Query: 549 GDSLKSMLVAVVVPCEEDT 567
                 +  AVVVP  +  
Sbjct: 364 --QHPGIQEAVVVPKPDAE 380

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  130 bits (328), Expect = 7e-32
 Identities = 110/543 (20%), Positives = 187/543 (34%), Gaps = 100/543 (18%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                  ++YTSGT+G PKG+V +H                 +      D + +      
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
           I                G ++   + L            +G   V    ++G      E 
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
                R+++AL KYK+            SP  L  L+     +      LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           + E  E F       +++  YG TET        P      G++G            +P 
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347

Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
            GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+    W+ TGD  +  
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLK-SMLVAVVV 561
            +G   +  R  ++IK+S G+ +    +E+V    P + +  V G  D  K  +++A VV
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVV 466

Query: 562 PCE 564
              
Sbjct: 467 LAA 469

Length = 528

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  128 bits (324), Expect = 1e-31
 Identities = 124/481 (25%), Positives = 193/481 (40%), Gaps = 92/481 (19%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           +I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + ++ V 
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVV 425

Query: 549 G 549
           G
Sbjct: 426 G 426

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  129 bits (326), Expect = 2e-31
 Identities = 155/588 (26%), Positives = 235/588 (39%), Gaps = 126/588 (21%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
                                 +R   SG   L    VE + ++T    LV+GYGLTET 
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373

Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
            P  V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           F GY+  P+ T +S +DGWF TGD+  +  +G ++I+DR K LI I+ G  V    +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486

Query: 536 YCVAPIIEDIWVYG---DSLKSMLVAVVVPC------EEDTKKWAYSN 574
               P +ED  V G   +     +VA VV         E  + +   +
Sbjct: 487 LREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  125 bits (316), Expect = 6e-31
 Identities = 95/371 (25%), Positives = 133/371 (35%), Gaps = 98/371 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+ 
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS-------ML 556
             +G +  +DRKK+ I+   GE ++   +E      P + +  V    + S         
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA--VPSELGEDEVKA 369

Query: 557 VAVVVPCEEDT 567
           V V+ P E   
Sbjct: 370 VVVLRPGETLD 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (293), Expect = 2e-27
 Identities = 132/513 (25%), Positives = 200/513 (38%), Gaps = 114/513 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRG 472
           P T C     D +  +G+ G V          +P +    +D+     P    GE+  R 
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRA 378

Query: 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
            TL SGY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +
Sbjct: 379 PTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEV 437

Query: 533 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           ENV    P I ++ V G   +    + VAV   
Sbjct: 438 ENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Length = 542

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (287), Expect = 1e-26
 Identities = 141/547 (25%), Positives = 205/547 (37%), Gaps = 124/547 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I 
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE---EDTKKWA-YSNGH 576
           I  GE +    +E      P + D+ V+G           VP E   E+   W     GH
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQVFG-----------VPDEKYGEEIVAWVRLHPGH 503

Query: 577 AGSFLEL 583
           A S  EL
Sbjct: 504 AASEEEL 510

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  109 bits (275), Expect = 4e-26
 Identities = 96/363 (26%), Positives = 143/363 (39%), Gaps = 85/363 (23%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TGD+G +  +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEED 566
            +  R K LI    GE ++   +E V    P + +  V+G   +     + A VV    D
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVL-RAD 299

Query: 567 TKK 569
           +K 
Sbjct: 300 SKV 302

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (278), Expect = 5e-26
 Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 521
            +  GY   P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  108 bits (272), Expect = 8e-25
 Identities = 114/365 (31%), Positives = 157/365 (43%), Gaps = 104/365 (28%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 336
           L+ V+                 L  LR     +   +L  +   FE   + E I++    
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 393
           + P    I  A+ K               SP+    DL + R V            SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308

Query: 394 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 442
           PL  E+E+  R     A L QGYG+TE  GP        MC+           G+ G V 
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
             +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  DGW HTGDIG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
            I  +  + I+DR K LIK  +G  VA   LE +    P I D             A VV
Sbjct: 421 YIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD-------------AAVV 466

Query: 562 PCEED 566
           P +++
Sbjct: 467 PMKDE 471

Length = 537

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  108 bits (271), Expect = 1e-24
 Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G + I 
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447

Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            R+K++I I+   Y   E +E      P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  104 bits (261), Expect = 1e-23
 Identities = 110/370 (29%), Positives = 142/370 (38%), Gaps = 90/370 (24%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + 
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361

Query: 505 PNGVVKIIDRKK-NLIK-----ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSM 555
           P+G+ +I+ R+  +LIK     I  GE      +E      P + +  V G   D L   
Sbjct: 362 PDGMHRIVGRESTDLIKSGGYRIGAGE------IETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 556 LVAVVVPCEE 565
           +VA VV  ++
Sbjct: 416 IVAYVVGADD 425

Length = 471

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  103 bits (258), Expect = 4e-23
 Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)

Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+GD+ 
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 99.9 bits (249), Expect = 5e-22
 Identities = 141/640 (22%), Positives = 214/640 (33%), Gaps = 176/640 (27%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T   +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V    P + 
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVA 463

Query: 544 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN---GHAGSFLELCSLVQLQNYILSELKNA 600
            + V G    S L  +VV C      W +S+    +A   L L S           L++ 
Sbjct: 464 SVVVVG-VPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS---------ETLRHH 513

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 640
                L  F+  K  +   +PF      +T T K +R+++
Sbjct: 514 CREKNLSRFKIPKLFVQWRKPFP-----LTTTGKIRRDEV 548

Length = 563

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 102/342 (29%), Positives = 150/342 (43%), Gaps = 67/342 (19%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
              ++DRKK++I IS G  V  + +E      P ++++ V G
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 99.4 bits (248), Expect = 7e-22
 Identities = 132/503 (26%), Positives = 198/503 (39%), Gaps = 87/503 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           P L      DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Query: 543 EDIWV--YGDS-LKSMLVAVVVP 562
             + +  Y D  L     A VVP
Sbjct: 468 AQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 3e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 510 KIIDRKKNLIKIS 522
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (243), Expect = 3e-21
 Identities = 134/514 (26%), Positives = 207/514 (40%), Gaps = 82/514 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             GY+  P+ T   + DGW HTGD+G +  +G   + DRKK++I ++ G  V    +E V
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEV 472

Query: 536 YCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDT 567
                 ++++   G  D  +   V   V  +E T
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Length = 563

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.3 bits (238), Expect = 8e-21
 Identities = 87/366 (23%), Positives = 144/366 (39%), Gaps = 76/366 (20%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCE-- 564
             + RK   IK+  G  + LE +E      P +E+   + V        LVA VV  E  
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA 405

Query: 565 EDTKKW 570
            DTK  
Sbjct: 406 LDTKAL 411

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.0 bits (239), Expect = 9e-21
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
           +DRKK++I +S G  V    LE+V    P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 126/524 (24%), Positives = 189/524 (36%), Gaps = 95/524 (18%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           R    F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433

Query: 528 ALEYLENVYCVAPIIEDIWVYGDSLKSML----VAVVVPCEEDT 567
           +   +E V    P +    V+   + S L    V   V   + T
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVF--PVPSELGEDEVMAAVVLRDGT 475

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 93/364 (25%), Positives = 142/364 (39%), Gaps = 94/364 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++ 
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
             G +KI  RKK++I +  GE ++   +E++    P I D  V     + L     A VV
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVV 480

Query: 562 PCEE 565
               
Sbjct: 481 LKAP 484

Length = 547

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 91.9 bits (229), Expect = 2e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 518 LIKISQGE 525
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470

Length = 562

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246

Query: 506 NGVVKIIDRKKNLI 519
           +G + +  R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.0 bits (224), Expect = 6e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 88.5 bits (220), Expect = 2e-18
 Identities = 114/499 (22%), Positives = 185/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS 551
             W  TGD      +G      R  +++K+S G +V+   +E+     P + +  V G  
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAE 441

Query: 552 LKSMLV---AVVVPCEEDT 567
            +  L    A VV  +   
Sbjct: 442 DEDGLTKPKAFVVLKDGYQ 460

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 88.5 bits (219), Expect = 3e-18
 Identities = 93/455 (20%), Positives = 152/455 (33%), Gaps = 95/455 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP                                   + +         L   
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 429
                + +    RLR ++SGG  L   + + L         L+  YG TE     T+  P
Sbjct: 475 ALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAP 529

Query: 430 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
                      V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT 
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589

Query: 488 ES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           E  I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 590 ERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS 551
           W HTGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + ++   G  D 
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDE 496

Query: 552 LKSMLVAVVV 561
               +V VV+
Sbjct: 497 KSGEIVKVVI 506

Length = 560

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 86.9 bits (216), Expect = 6e-18
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
           E +    +E V    P + +  V G
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVG 415

Length = 483

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 86.2 bits (214), Expect = 6e-18
 Identities = 91/357 (25%), Positives = 129/357 (36%), Gaps = 80/357 (22%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                                                    LL      A L   +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G 
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVP 562
            +   R  ++IK+S G++V+   +E      P + +   + V  +     L A VVP
Sbjct: 330 YRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVP 385

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 85.7 bits (213), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 128/515 (24%), Positives = 193/515 (37%), Gaps = 104/515 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
                PR V + +   GI   L  + PL  ++       +L W           P +   
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276

Query: 373 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           + R +    GG + R  +S           FL           YGLTE    T +  P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324

Query: 432 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           +      +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375

Query: 485 LTRESI--------------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 530
            T E                +  W  +GD  +    G +  + R+  +IK S G  V+  
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432

Query: 531 YLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
            +E V     ++ +   +G    +L   +V VV P
Sbjct: 433 EVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLV 557
           G +   G + + DRKK++I IS GE +A   +E V    P + +  V G   D     + 
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439

Query: 558 AVVV 561
           AVVV
Sbjct: 440 AVVV 443

Length = 497

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
           +I  +G + I+ R K   KI  GE V+L  +E       ++ +I        S+  AV V
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEE------LLSEIL----PEDSLHAAVEV 425

Query: 562 PCEE 565
           P E+
Sbjct: 426 PDEK 429

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 106/379 (27%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
                 L  L PL R  F +L                                     R 
Sbjct: 105 ------LLRLDPLAREDFPSL-------------------------------------RY 121

Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
           +   +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ +  V G  
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVP 288

Query: 550 -DSLKSMLVAVVVPCEEDT 567
              L   +VAVVV  + ++
Sbjct: 289 DPLLGQAIVAVVVSADGES 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 84.9 bits (211), Expect = 3e-17
 Identities = 137/513 (26%), Positives = 191/513 (37%), Gaps = 159/513 (30%)

Query: 64  RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 123
            PF++   G     TY ++     ++ + L A G +PG RV +     P   EA+    A
Sbjct: 18  APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68

Query: 124 LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176
           L L  +       PL        +++ +  AE   + V D      LS     A      
Sbjct: 69  LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124

Query: 177 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229
              T       SL                  D+F         E +P    ++  I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165

Query: 230 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 288
           GT+G  KG +L+H  + +  ++ VD +      + T DDV +  LP+ H           
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209

Query: 289 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348
                    HG   A           LLAG   +F                L +  FD  
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------------LPK--FDP- 234

Query: 349 YKYKLAWMN-----MG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
               LA M      MG    Y +    P        +  A     +RL ISG APL  E 
Sbjct: 235 -DAVLALMPRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAET 285

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSEL 447
             EF   T  A L + YG+TET   T           TV FP    + G          L
Sbjct: 286 HREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SL 332

Query: 448 RLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
           R+ + PE G + L   P GE+    V+G  +F GY++ P+ T E    DG+F TGD+G+I
Sbjct: 333 RVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
              G V I+ R K+LI IS G Y       NVY
Sbjct: 388 DERGYVHIVGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 128/638 (20%), Positives = 236/638 (36%), Gaps = 80/638 (12%)

Query: 42   NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
             +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427  RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102  CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
              +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483  DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161  ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
             +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540  AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220  FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                  ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594  HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270  LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
              F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650  -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330  IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            + +A E    +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707  LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Query: 390  --SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
                    S  + E + V C    ++      + G   V      C+ GT  P S+  +L
Sbjct: 764  LCVSEESTSFSLLEHISV-CYVPCLREVFFLPSEG---VF-----CVDGTPAP-SLQVDL 813

Query: 448  RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
                       P D+P  G     G+ + +   K        I   W    D        
Sbjct: 814  E----------PFDEPSDGAGI--GQLVLA--KKGEPRRTLPIAAQW--KRD-------R 850

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
             ++++     ++     EYV    LE ++  +  + DI++Y D  +  ++A+V P   DT
Sbjct: 851  TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSP-NRDT 908

Query: 568  K--KW--AYSNGHAGSFLELCSLVQLQNY----ILSELKNAAERNKLRGFEHIKGVILDP 619
               +W  ++  G  G         +L  Y    + ++    A+ N L      + V L P
Sbjct: 909  VEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHP 968

Query: 620  RPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 657
              F      +T   K +R+ +  Y+   I++ Y  +  
Sbjct: 969  HAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006

Length = 1452

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
            SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 126/529 (23%), Positives = 188/529 (35%), Gaps = 177/529 (33%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVF 323
                      LD          GASV               EL    K T  AGVP V+
Sbjct: 244 MGTKLVMPGAKLD----------GASV--------------YELLDTEKVTFTAGVPTVW 279

Query: 324 EKIHEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPL 368
             + + ++K   +L  L+          R +  A     +    AW M       E SPL
Sbjct: 280 LMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPL 333

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
             L A +   ++L G  RL +                       QGY       P  V  
Sbjct: 334 GTLAALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV-- 365

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
             EM +   AG          +E+P       D    G + VRG  + + YY+       
Sbjct: 366 --EMKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG---- 403

Query: 489 SIID--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            I+D  G+F TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 404 EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.4 bits (203), Expect = 2e-16
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 44/197 (22%)

Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
           T E+   GW +TGD+G I P+G V+I DR K++I IS GE ++   +ENV         +
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV---------L 462

Query: 546 WVYGDSLKSMLVAVVVP 562
           + Y   L++ +VA+  P
Sbjct: 463 YKYPKVLETAVVAMPHP 479

Length = 579

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 82.3 bits (204), Expect = 3e-16
 Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459

Query: 508 VVKIIDRKKNLI 519
              +  R K+LI
Sbjct: 460 YFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 124/508 (24%), Positives = 177/508 (34%), Gaps = 150/508 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDL----M 309
                F   +  DDV +S+LPL                     YH        D+     
Sbjct: 179 AIARAFG--LDPDDVGVSWLPL---------------------YH--------DMGLIGG 207

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR--RIFDALYKYKLAWM---NMGYK 361
            L+P L AG P V              + P   LRR  R  +A+ +Y+       N  Y 
Sbjct: 208 LLQP-LYAGFPVVL-------------MSPLAFLRRPLRWLEAISRYRATVSGAPNFAY- 252

Query: 362 QREASPLADLLAFRKVK-ARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG- 414
                   DL   R+V+  +L G      R+  +G  P+  + +E F       F   G 
Sbjct: 253 --------DLCV-RRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAE----RFAPAGF 299

Query: 415 --------YGLTETC----------GPTTVCFPDEMCMVGTAGP-----------VSVYS 445
                   YGL E            GP  +    +    G A             VS   
Sbjct: 300 RPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGR 359

Query: 446 ELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGW 494
            L   EV    PE    PL D   GE+ VRG ++ +GY+  P+ T E+          GW
Sbjct: 360 PLPGHEVRIVDPE-TRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGW 418

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
             TGD+G  L +G + +  R K+LI I 
Sbjct: 419 LRTGDLG-FLHDGELYVTGRLKDLIIIR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
                  P  +P       GE+C+ G  +  GY   P+LT E  I      +      + 
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
           TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 80.5 bits (199), Expect = 5e-16
 Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD    
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317

Query: 504 LPNGVVKIIDRKKNLIKIS 522
             +G    + R  ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 80.2 bits (199), Expect = 6e-16
 Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F    
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325

Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
                TGD+ + LP+G ++ + R  + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.5 bits (199), Expect = 8e-16
 Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
            DGWF TGD+G +   G + I  R  ++  IS G         NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428

Length = 528

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 78.9 bits (194), Expect = 3e-15
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           TGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED  V
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 522 SQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCE 564
             GE V+   LEN+    P I+DI V G  DS++   + A VV  E
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471

Length = 517

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398

Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             +  +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 77.3 bits (190), Expect = 8e-15
 Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
              P +L     V + I    + A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  + 
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVA 469

Query: 547 VYG---DSLKSMLVAVVVP 562
           +     + L     AVVVP
Sbjct: 470 IVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV- 557
           G +   G + I  R K LI    GE ++ E +E V    P + +  V+G  D L    V 
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVA 474

Query: 558 AVVVPCE 564
           AV+VP E
Sbjct: 475 AVIVPRE 481

Length = 534

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Query: 499 D 499
           D
Sbjct: 401 D 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 526 YVA 528
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 92/354 (25%), Positives = 133/354 (37%), Gaps = 69/354 (19%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
             P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337

Query: 515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCEE 565
             ++IK S G  +    +E      P + +  V G  D  +  +V A VV  E 
Sbjct: 338 ADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEG 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 28/181 (15%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D  V 
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 549 G 549
            
Sbjct: 485 A 485

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 7e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 28/195 (14%)

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
           L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     ++ 
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P      G+ G    + ++ +            D   GE+ VRG +L  GY   P  T 
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I    V
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380

Query: 548 YGDSLKSMLVAVVVP 562
           +GD+ +  LVA++VP
Sbjct: 381 FGDA-QPFLVALIVP 394

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 71.5 bits (176), Expect = 5e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 479 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           Y+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.5 bits (171), Expect = 3e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 67.7 bits (166), Expect = 7e-12
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---------CVAPIIED 544
           W HTGD+ +   +G   I+DRKK++I ++ G  V    +E+V           V  + ++
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452

Query: 545 IWVYGDSLKSMLVAVVVPCEE 565
            W  G+++     AVVV    
Sbjct: 453 KW--GEAVT----AVVVLRPG 467

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.5 bits (166), Expect = 1e-11
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 525 EYVALEYLENVY 536
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 99/395 (25%), Positives = 151/395 (38%), Gaps = 94/395 (23%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323

Query: 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV 557
           + +   +G    I R  ++I IS G  +    +E+     P + +  V G  D L+  +V
Sbjct: 324 LVERDEDGYFWFIGRADDVI-ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIV 382

Query: 558 -AVVVPCEEDTKKWAYSNGHAGS---FLELCSLVQ 588
            A VV             G+AGS     EL   V+
Sbjct: 383 KAFVV----------LKEGYAGSDELAEELQLFVK 407

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
             DGWF TGDI +   +G   ++DRKK++  IS GE V    +E V    P I +  V G
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416

Length = 488

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 7e-11
 Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
            +R  +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 8e-11
 Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 42/195 (21%)

Query: 385  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 439  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            + TGDI  I   G + I  R K   KI+ GE ++L  +E       +  ++W        
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE------LAAELWPDALH--- 1061

Query: 555  MLVAVVVPCEEDTKK 569
               AV +P   D +K
Sbjct: 1062 --AAVSIP---DARK 1071

Length = 1140

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 89/365 (24%), Positives = 136/365 (37%), Gaps = 75/365 (20%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG 318
              +  DDV Y+S +PL                     +H   NA+   +      L AG
Sbjct: 189 G--LGPDDVCYVS-MPL---------------------FHS--NAV---MAGWAVALAAG 219

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMGYKQREASPLADLL 372
                                LRR+ F A      + +Y   + N   K     PL+ +L
Sbjct: 220 ASIA-----------------LRRK-FSASGFLPDVRRYGATYANYVGK-----PLSYVL 256

Query: 373 AFRKVKARLGGRLRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD- 430
           A  +        LR+V    GAP   ++  F R   C  +V G+G TE  G      PD 
Sbjct: 257 ATPERPDDADNPLRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDT 312

Query: 431 -EMCMVGTAGPVSVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPD 484
               +      V++       E P      G     D   GE V   G   F GYY +P+
Sbjct: 313 PPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPE 372

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
              E +  G + +GD+     +G      R  + +++  GE +    +E +    P   +
Sbjct: 373 ADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATE 431

Query: 545 IWVYG 549
           + VY 
Sbjct: 432 VAVYA 436

Length = 529

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLA 276
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 112/520 (21%), Positives = 177/520 (34%), Gaps = 133/520 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP   + + +     +   RP R  +                   EA  + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA R      G R                          L+  YG TE    TTV     
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
                         EL  EE    G  P+  P              P      GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861

Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
             L  GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI +G
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RG 920

Query: 525 EYVALEYLENVYCVAPIIEDIWV--YGDSLKSMLVAVVVP 562
             + L  +E      P + +  V          LVA +VP
Sbjct: 921 FRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960

Length = 3956

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
              W  +GD      +G      R  +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 498 GD 499
           GD
Sbjct: 445 GD 446

Length = 614

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 63.0 bits (154), Expect = 4e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 385  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 434  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 485  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 61.8 bits (151), Expect = 5e-10
 Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 31/202 (15%)

Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                   + TGD+ +  P+G ++ + R  + +KI +G  + L  +E      P + D  
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAV 372

Query: 547 VY---GDSLKSMLVAVVVPCEE 565
           V           LVA VVP   
Sbjct: 373 VVVREEGPGDQRLVAYVVPKAG 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 519 IKISQGEYVALEYLENV 535
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L  V   GA +   V E +        V  YG TE      +  P      GT      +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           SE+R+  +       L +   GE+ V      F+GY   P  T E + DGW+ T D+  +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVV 560
            P+G V+I+ R  ++I IS GE +    +E V   AP + ++ V G   +     + A V
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACV 445

Query: 561 VPCEEDT 567
           VP E +T
Sbjct: 446 VPREGET 452

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 521 ISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG 578
           I  G  V L  +E      P ++   + V GD     L A VV  +      A       
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445

Query: 579 SFL 581
             L
Sbjct: 446 ELL 448

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 26/196 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
             + ++LD ++   +  + +   +V E+L        +LR +V     +       +  G
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGN----DLLPG 141

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
              Y  ++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D+
Sbjct: 142 AVDY--EDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------DI 188

Query: 255 FLDQFE--DKMTVDDV 268
           F       D  T + +
Sbjct: 189 FRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 95/489 (19%), Positives = 152/489 (31%), Gaps = 87/489 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
                +     V L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
                 T  AGVP V+  +    E                     K     +  G     
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
           ++    L+A  +        + +    G    TE                  +       
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316

Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                  +E  + +     + +          E    P D    GEV ++G  +  GYY 
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376

Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           N + TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435

Query: 541 IIEDIWVYG 549
            +++  V  
Sbjct: 436 KVKEAAVVA 444

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 370  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 422  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 482  NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
             P LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.5 bits (136), Expect = 4e-08
 Identities = 78/361 (21%), Positives = 129/361 (35%), Gaps = 69/361 (19%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 397  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTEA----TITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 455  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
                P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
            V++ I R  + +KI +G  + L  +E      P + +  V     +  LVA VVP +E  
Sbjct: 3439 VIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQ-LVAYVVPEDEAG 3496

Query: 568  K 568
             
Sbjct: 3497 D 3497

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 55.6 bits (135), Expect = 5e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 40/208 (19%)

Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
           LR ++ GG  LS   V   L       L+ GYG TE    TT   C     +     + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298

Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +       +VY    E +   +   G          E+ V G  L  GY   P+LT E  
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348

Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
           +      G   + TGD+ +  P+G ++ + R    +KI +G  + L  +E      P + 
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVR 407

Query: 544 DIWV----YGDSLKSMLVAVVVPCEEDT 567
           +  V         K  LVA VV      
Sbjct: 408 EAAVLVREDAAGDKR-LVAYVVARGALD 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.5 bits (136), Expect = 5e-08
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 397  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 453  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
             +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +  
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392

Query: 505  PNGVVKIIDRKKNLIKI 521
             +GVV+ + R  + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.9 bits (135), Expect = 5e-08
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL--- 552
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D  +    D L   
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 553 KSMLVAVVVPCEEDTK 568
           KS   A +V  E   +
Sbjct: 478 KS--CAFIVVKEPPLR 491

Length = 542

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 55.1 bits (133), Expect = 9e-08
 Identities = 83/351 (23%), Positives = 134/351 (38%), Gaps = 87/351 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
           L              P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Query: 505 -PNGVVK--IID-RKKNLIKISQGEYVALEYL--ENVYCVAPIIEDIWVYG 549
            P+   K  I D R     K+S G +V++  L  + V   +P+I D  V G
Sbjct: 464 DPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 518 LIKI 521
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +    S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 396  ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 446  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475

Query: 498  GDIGQILPNGVVKIIDRKKNLIKI 521
            GD+ +   +GV++ + R  + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + I DR +++I+ S GE++    LEN    AP + +  V G
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 384 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           RLR V++G   L    ++       LR+      ++GYG+TE C P            GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532

Query: 438 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 492
            G +    + RL  VP  E G         G + ++G  + +GY +   P +      + 
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583

Query: 493 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
                  GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+     +G +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               R  + +++  GE ++   +E +    P I  + VY 
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435

Length = 540

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS-LKSMLVA 558
            +  +G + + DRK++++ IS G  +    +E V    P + D  V+G  D+     L+A
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446

Query: 559 VVVP 562
           VV P
Sbjct: 447 VVEP 450

Length = 509

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 78/372 (20%), Positives = 114/372 (30%), Gaps = 95/372 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
           I++TSG++G PKGVV TH    TF + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
              VI        A++        +  +    +   P LL  V R  E+        L  
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200

Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
           LR            L RR    L           Y   EA P+A +              
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246

Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
           R V++     S E  E     C    V G               D   +    GP++ + 
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288

Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
              EL   EV             GE+ V G  +   YY  P+ T+ + I      W   G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVYCVA--PIIEDIWVYGD 550
           D+G     G +    RK + ++ + G                V   A   +       G 
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-------GK 388

Query: 551 SLKSMLVAVVVP 562
                 V VV P
Sbjct: 389 PGTQAPVLVVEP 400

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
            +GV+ ++ R  + I  + G  V  + +E      P + D  V+G   D L   +VA VV
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303

Query: 562 P 562
            
Sbjct: 304 G 304

Length = 358

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 6e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 383 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 438 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL 552
           F T D+G +   G + I+ R    I I+ GE V    +E       +++D+ V G  D  
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH 384

Query: 553 -KSMLVAVVVP 562
              ++ A+ VP
Sbjct: 385 WGEVVTAIYVP 395

Length = 452

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAH 277
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.7 bits (117), Expect = 8e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 388  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F       
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955

Query: 496  -HTGDIGQILPNGVVKIIDRKKNLIKI 521
              TGD+ +   +GV++ + R  + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--------EMCMVG 436
           LRLV  GG+        F+  T      Q YGL+ET G T +C P         E   VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 437 TAGP-VSVYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
              P V VY           G  P           G + ++      GY+ NP+ T E +
Sbjct: 346 RPYPGVDVYLA------ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           IDGW +TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 400 IDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--- 549
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D  V G   
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPD 304

Query: 550 DSLKSMLVAVV 560
           +     +VAVV
Sbjct: 305 ERWGQRVVAVV 315

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 117/556 (21%), Positives = 188/556 (33%), Gaps = 145/556 (26%)

Query: 19  PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
           P   P +   L    +P     LN A ++    V    GNR          +     W T
Sbjct: 14  PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62

Query: 79  YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQ----WVEAMEACNALSLICVPLYD 133
           Y+++ +   +I   L    G  PG RV +  AN P     W+  ++A      I V    
Sbjct: 63  YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKA----GAIVVTTMP 118

Query: 134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
            L    +  I+D A I                           +C   LTA         
Sbjct: 119 LLRAKELTTIVDKARITHA------------------------LCDKRLTAAD------- 147

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                                      ++  I +TSGT+G PKG +  H  I   ++  D
Sbjct: 148 ---------------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICD 177

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMEL 311
            F  +   + T DDV++   PLA         + F  G  V +    G    L       
Sbjct: 178 AF-PRHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL------- 220

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
                                 LE+  P    +  A+ +++   +         +P A  
Sbjct: 221 ----------------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYR 249

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
               KVKA     LR  +S G  L  +V +++   T    ++ G G TE      +   +
Sbjct: 250 AMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANE 307

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           E    G  G PV  Y    +++      + +     G + VRG T     Y + +  +E 
Sbjct: 308 ENAKPGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEY 361

Query: 490 IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + DGW  TGDI +   +G    + R  ++I +S G  +A   +E+     P + +  V G
Sbjct: 362 VRDGWNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420

Query: 550 --DSLKSMLV-AVVVP 562
             D  +  +V A +V 
Sbjct: 421 VPDEERGQIVCAHIVL 436

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 7e-05
 Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
                             PLA +L RV     FR G +           G+ H  L    
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
              M L  T+      V                   RR FD       + K+K   +   
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299

Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
                  P     + DL    +V A+     L+++   G+ LS E+     E F  V   
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
                 YG TE     T+  P+++    GT G       +++          LD+     
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397

Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I 
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453

Query: 521 ISQGEYVALEYLENVY 536
           +S G        ENV+
Sbjct: 454 VSGG--------ENVF 461

Length = 549

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 535 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
                P + D  V G   +     +VAVV  
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQL 479

Length = 533

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 551
              GD+G +  +G + + DRK ++I IS G  +  + +EN+    P + D+ V+G   + 
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 552 LKSMLVAVVVP 562
           +   + AVV P
Sbjct: 430 MGERVKAVVQP 440

Length = 502

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 45.2 bits (108), Expect = 1e-04
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 526 YVALEYLENVYCVAPIIEDIWVYG 549
            +  E +E+V    P +++I V G
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L + I   AP   +V+E +       + + Y  TE  G T     + +   GT G   ++
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRA-MF 335

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWFHTGDIGQ 502
            +L + +  +    P  +P  G +   G   F  Y  +P  T E+      W   GDIG 
Sbjct: 336 GDLHILD-DDGAELPPGEP--GTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGY 391

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +  +G + + DR   +I IS G  +  +  EN+    P + D  V+G   + L   + AV
Sbjct: 392 VDEDGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAV 450

Query: 560 VVP 562
           V P
Sbjct: 451 VQP 453

Length = 511

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 27/185 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            LR +I  G  L  ++ +EF        +V+ YG TE      +   +     G  G + 
Sbjct: 197 PLRKII--GNGLRPDIWDEFKERFGVPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLP 250

Query: 443 VYSELRLEEVPEMGYSPLDDPP--C--------GEVCVRGKTL--FSGYYKNPDLTRESI 490
             + + + +       P+ D    C        G +         F GY  +    ++ +
Sbjct: 251 -PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKIL 309

Query: 491 I------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
                  D +F+TGD+ +    G    +DR  +  +  +GE V+   +E V    P +E+
Sbjct: 310 RDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEE 368

Query: 545 IWVYG 549
             VYG
Sbjct: 369 ANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPL 275
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 497
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + D+ V G
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAVIG 434

Length = 501

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 459 PLDDPPCGEVCVR----GKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507
           P+ +P  GE+  R     + LF GY KN D T   ++       D W+ TGD+ +   +G
Sbjct: 295 PVGEP--GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               +DR  +  +  + E V+   + +V    P + +  VYG
Sbjct: 353 RWYFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	660
PLN02614	666	long-chain acyl-CoA synthetase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.92
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.75
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.74
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.84
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.77
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.4
PLN02249	597	indole-3-acetic acid-amido synthetase	97.82
PLN02247	606	indole-3-acetic acid-amido synthetase	97.8
PLN02620	612	indole-3-acetic acid-amido synthetase	97.59
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.63
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	92.83

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.1e-86  Score=747.27  Aligned_cols=655  Identities=51%  Similarity=0.928  Sum_probs=544.4

Q ss_pred             cccceecccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHH
Q 006115            2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE   81 (660)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~e   81 (660)
                      |-|-.|+++++++.++.|.++++||+.....+++.......|+.++|+++++++||++|+.+....++..+.++++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            45678999999999999999999999887777775556678999999999999999999986410022234567899999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhh
Q 006115           82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (660)
Q Consensus        82 l~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  161 (660)
                      |.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|+.++++++|+++.....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             hhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeec
Q 006115          162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (660)
Q Consensus       162 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~t  241 (660)
                      +..........++.++.++.............+....+++++...............++|+++|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            43322211223556666654221111011112233567887765442222222334679999999999999999999999


Q ss_pred             cHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechH
Q 006115          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR  321 (660)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~  321 (660)
                      |++++..+......+......+..+|++++++|++|.++......+++.|+++++.+.++..+++.+++++||+++++|+
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887665433211112467899999999999999987666678899999888778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHH
Q 006115          322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE  401 (660)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~  401 (660)
                      ++..+...+.......+.+.+.++.++++.+...+..+.......+..+.+.+++++..++++||.+++||+++++.+.+
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~  404 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES  404 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Confidence            99999988777766666677777777777666555555445556778888889999999989999999999999987654


Q ss_pred             HHHHhc-CCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006115          402 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (660)
Q Consensus       402 ~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~  480 (660)
                       +.+.+ ++++++.||+||+++..+...+.+....+++|+|+|+++++|+|+++++..+++.|+.|||+|+||+++.|||
T Consensus       405 -~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~  483 (666)
T PLN02614        405 -FLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY  483 (666)
T ss_pred             -HHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence             44455 5899999999999876554444333345899999999999999855554455667889999999999999999


Q ss_pred             CCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEE
Q 006115          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (660)
Q Consensus       481 ~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v  560 (660)
                      ++++.|.+.|.+|||+|||+|++|+||+|+++||.+|+||+++|++|+|.+||++|.+||.|.+|+|+|.+.+..++|+|
T Consensus       484 ~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alv  563 (666)
T PLN02614        484 KREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIA  563 (666)
T ss_pred             CCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999997689999999999999999999999999988778999999


Q ss_pred             EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHH
Q 006115          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  640 (660)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l  640 (660)
                      +++.+....|...++...+..++|.++++++.+.+++.+..++..|+.|++++.|.+++++|+++...+||++|++|+.+
T Consensus       564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i  643 (666)
T PLN02614        564 NPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQL  643 (666)
T ss_pred             eCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHH
Confidence            99999999999988876678888999999999999999888778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 006115          641 LIYYQVEIDQLYEKLAP  657 (660)
Q Consensus       641 ~~~~~~~l~~~y~~~~~  657 (660)
                      .+.|+++|++||.+.++
T Consensus       644 ~~~y~~~i~~ly~~~~~  660 (666)
T PLN02614        644 LKYYQSVIDEMYKTTNE  660 (666)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999999997553

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-86  Score=691.79  Aligned_cols=629  Identities=46%  Similarity=0.765  Sum_probs=574.7

Q ss_pred             Cceecccc--CCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCC
Q 006115           23 PVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP  100 (660)
Q Consensus        23 ~~~r~~~~--~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~  100 (660)
                      ++||+...  +.+++-.+....|+++.|.+.++.+|+.+++.....++ ..++|+++||+|+.+++..++..|++.|+++
T Consensus        54 ~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~  132 (691)
T KOG1256|consen   54 GSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVKE  132 (691)
T ss_pred             CceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCCC
Confidence            79999988  56677778899999999999999999999999884433 5688999999999999999999999999999


Q ss_pred             CCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEc-cchhhhhhccccc-cccCccEEEE
Q 006115          101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMVC  178 (660)
Q Consensus       101 gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~i~~  178 (660)
                      ++.|+|+.-|++||+++.+||...|.++||+..+.+++.+.++++.+.+.++|++ ++....+.+.... ..+.++.++.
T Consensus       133 ~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~  212 (691)
T KOG1256|consen  133 DSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQ  212 (691)
T ss_pred             CceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 5566666665554 4788999999


Q ss_pred             ecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccC-CCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccc
Q 006115          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (660)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~  257 (660)
                      ++.............++.+.+|+++...+....... .+..++|.|.|.|||||||.||||++||+|+++.+........
T Consensus       213 ~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~  292 (691)
T KOG1256|consen  213 LDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSA  292 (691)
T ss_pred             ecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhh
Confidence            999988888888888899999999999996555444 4789999999999999999999999999999997654322222


Q ss_pred             cccC-CCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006115          258 QFED-KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (660)
Q Consensus       258 ~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (660)
                      .... .....|++++++|+.|++........++.|+++.+..+|+..+.+.++..+||.+.++|.+|.++.+.+++....
T Consensus       293 ~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~  372 (691)
T KOG1256|consen  293 AENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQK  372 (691)
T ss_pred             cccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhc
Confidence            1111 223479999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHHH-HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeec
Q 006115          337 LRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY  415 (660)
Q Consensus       337 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~Y  415 (660)
                      ...+++.++++++..+. ..+..|.... ..+++|++.+.++++.+|+++|.+++|++|+++++...++..+|++|+++|
T Consensus       373 sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGY  451 (691)
T KOG1256|consen  373 SGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGY  451 (691)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecc
Confidence            99999999999998888 5577775543 689999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCc
Q 006115          416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (660)
Q Consensus       416 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~  494 (660)
                      |+||+++.++...+++. ..+++|.|+|+++++++|+++.+....+.  .|||||||+.+|.||+++|+.|.+.+ .|||
T Consensus       452 GlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~--~GEIcirG~~Vf~GYyK~p~~T~e~ideDGW  528 (691)
T KOG1256|consen  452 GLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGS--KGEICVRGPNVFMGYYKDPEKTAEAIDEDGW  528 (691)
T ss_pred             cccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCCC--cceEEEecchhceeccCChHHHhhhhccccc
Confidence            99999977777777666 56999999999999999999888777663  79999999999999999999999999 9999


Q ss_pred             cccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHC
Q 006115          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       495 ~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ++|||+|+|+++|.|++.||.++++|+++|++|.|+.||++..+.+.|.+.+|.|.+.+..++|+|+++++....|+..+
T Consensus       529 LhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~  608 (691)
T KOG1256|consen  529 LHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKD  608 (691)
T ss_pred             cccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHc
Confidence            99999999999999999999999999999999999999999999999999999999888999999999999999999977


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006115          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~  654 (660)
                      +...+..++|.+.++++.+..++....+...|..+...+.|.+.+++|+++..-+||+-|++|..|.++|+++||+||+.
T Consensus       609 ~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~~  688 (691)
T KOG1256|consen  609 GVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYKE  688 (691)
T ss_pred             cCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHhh
Confidence            77899999999999999999999999888999999999999999999999999999999999999999999999999997


Q ss_pred             hc
Q 006115          655 LA  656 (660)
Q Consensus       655 ~~  656 (660)
                      .+
T Consensus       689 ~~  690 (691)
T KOG1256|consen  689 IK  690 (691)
T ss_pred             cc
Confidence            54

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.6e-85  Score=737.28  Aligned_cols=659  Identities=79%  Similarity=1.305  Sum_probs=562.4

Q ss_pred             CcccceecccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHH
Q 006115            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (660)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~   80 (660)
                      ||-++.++.+..++++++|.++++||+......++..++..+|+.++|.+.++++|+++|+.+....++..+.++++||.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            88899999988888889999999999988777776667789999999999999999999997641112344567789999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh
Q 006115           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (660)
Q Consensus        81 el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  160 (660)
                      ||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.++|+.++++++|+++....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             hhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeee
Q 006115          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (660)
Q Consensus       161 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~  240 (660)
                      ..........+.++.++.++.............+....+|+++...+........+..++++++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33222222234566777776533221111111234456888887655332222233468999999999999999999999


Q ss_pred             ccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEech
Q 006115          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
Q Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p  320 (660)
                      ||++++..+.............++.+|++++++|++|.++....+.++..|++++++..++..+++.+++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999988766533221111246789999999999999998877777899999988877889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHH
Q 006115          321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  400 (660)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~  400 (660)
                      .+++.+.+..........+.++.+++++.+.+...++.+.......++++.+.+++++..++++||.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999888888877888899999999998888887765555677889899999999999999999999999999998


Q ss_pred             HHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006115          401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (660)
Q Consensus       401 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~  480 (660)
                      ++++...++++++.||+||+++.++...+.+....+++|.|.++++++++++++.+..+.+.++.|||+|+|+.++.||+
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            77766545789999999999887766554444445899999999999999866666556666678999999999999999


Q ss_pred             CCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEE
Q 006115          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (660)
Q Consensus       481 ~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v  560 (660)
                      ++++.+.+.|.+|||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||+++.+||.|.+|+|+|......++|+|
T Consensus       481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~v  560 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVV  560 (660)
T ss_pred             CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999998789999999999999999999999999976567999999


Q ss_pred             EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHH
Q 006115          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  640 (660)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l  640 (660)
                      +++.+....|....+...+..++|+++++++.+.++|.+.+++..|+.|++++.|++.+++|+++...+|+++|++|+.+
T Consensus       561 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i  640 (660)
T PLN02430        561 VPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNL  640 (660)
T ss_pred             EcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHH
Confidence            99999999999888877778899999999999999999998777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCC
Q 006115          641 LIYYQVEIDQLYEKLAPGR  659 (660)
Q Consensus       641 ~~~~~~~l~~~y~~~~~~~  659 (660)
                      .+.|+++|++||.+..+++
T Consensus       641 ~~~y~~~i~~ly~~~~~~~  659 (660)
T PLN02430        641 LKYYQVEIDEMYRKLAEKR  659 (660)
T ss_pred             HHHHHHHHHHHHHhhhhcc
Confidence            9999999999999887654

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.8e-84  Score=727.58  Aligned_cols=649  Identities=50%  Similarity=0.900  Sum_probs=542.5

Q ss_pred             eecccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHH
Q 006115            6 AQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEE   85 (660)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~   85 (660)
                      ..+||---++++.|.++++||+......+...++...|+.++|.++++++|+++|+......++..++++++||+||.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~   86 (660)
T PLN02861          7 VKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA   86 (660)
T ss_pred             eeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH
Confidence            45677777888999999999999888777777778899999999999999999999753111334466789999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcc
Q 006115           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (660)
Q Consensus        86 ~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  165 (660)
                      ++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|+++.....+...
T Consensus        87 v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~  166 (660)
T PLN02861         87 AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSC  166 (660)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987765544332


Q ss_pred             ccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhH
Q 006115          166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (660)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l  245 (660)
                      .......++.++.+++............+....+|.++...... ........++|+++|+|||||||.||||++||+++
T Consensus       167 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l  245 (660)
T PLN02861        167 LPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAI  245 (660)
T ss_pred             hhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHH
Confidence            22111245667766543321111111123345677777654321 11223456899999999999999999999999999


Q ss_pred             HHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHH
Q 006115          246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEK  325 (660)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~  325 (660)
                      +..+......+......+..+|++++++|++|.+++...+.+++.|+++++...++..+++.|++++||+++++|+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~  325 (660)
T PLN02861        246 IAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDR  325 (660)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHH
Confidence            98877654433111112568899999999999999877666899999998887789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHH
Q 006115          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (660)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~  405 (660)
                      |...............+.+++++.+.+...++.+.......+..+.+.++++++.+++++|.+++||+++++++.+ |.+
T Consensus       326 l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~  404 (660)
T PLN02861        326 IYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLR  404 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHH
Confidence            9988888888888888899999988888777666555555678888999999999999999999999999999865 444


Q ss_pred             hcC-CceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCch
Q 006115          406 TCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  484 (660)
Q Consensus       406 ~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~  484 (660)
                      .++ .++++.||+||+++.++..........+++|+|+++++++|+++++.+....+.++.|||+|+||+++.|||++++
T Consensus       405 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        405 VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            555 4799999999998766544333333458999999999999998555443333445689999999999999999999


Q ss_pred             hhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCh
Q 006115          485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (660)
Q Consensus       485 ~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~  564 (660)
                      .|.+.|.+|||+|||+|++|+||+|+++||+||+|++++|++|+|.+||++|.+||.|.+|+|+|.+....++|+|++..
T Consensus       485 ~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~  564 (660)
T PLN02861        485 LTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDR  564 (660)
T ss_pred             HHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCH
Confidence            99999999999999999999999999999999999976899999999999999999999999999886678999999999


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +....|...++......++|.+.+....+.+++.+.+++..|+.|..++.+.+.+++|+++..++|+++|++|+++++.|
T Consensus       565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y  644 (660)
T PLN02861        565 QALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYY  644 (660)
T ss_pred             HHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHH
Confidence            88888988777655678888888899999999999988778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 006115          645 QVEIDQLYEKLA  656 (660)
Q Consensus       645 ~~~l~~~y~~~~  656 (660)
                      +++|++||.+..
T Consensus       645 ~~~I~~lY~~~~  656 (660)
T PLN02861        645 KDCIDQLYSEAK  656 (660)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998654

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.4e-82  Score=714.40  Aligned_cols=631  Identities=40%  Similarity=0.663  Sum_probs=531.2

Q ss_pred             CCCCCCCCCceeccccCCCCCC---CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHH
Q 006115           15 KDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (660)
Q Consensus        15 ~~~~~~~~~~~r~~~~~~~~~~---~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~   91 (660)
                      .-.+.+++.+||+...+.++-+   .+....|+.++|+++++++||++|+.+....++..+.++.+||+||.++++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~   93 (651)
T PLN02736         14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS   93 (651)
T ss_pred             CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence            3445677889998776655532   3456789999999999999999999642101344456788999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcccccccc
Q 006115           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (660)
Q Consensus        92 ~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~  171 (660)
                      +|++.|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.++|+.++++++|++......+.... ...+
T Consensus        94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~-~~~~  172 (651)
T PLN02736         94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCL-SEIP  172 (651)
T ss_pred             HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHh-hcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987665544322 2345


Q ss_pred             CccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh
Q 006115          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (660)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~  251 (660)
                      .++.++..+.............+....+|+++.+.............++++++|+|||||||.||||++||++++..+..
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~  252 (651)
T PLN02736        173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG  252 (651)
T ss_pred             CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            56666666533221111111123446678887765432222233457899999999999999999999999999998888


Q ss_pred             cccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHH
Q 006115          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (660)
Q Consensus       252 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~  331 (660)
                      +...+     ++.++|++++++|++|.+++...+.+++.|+++++.+.++..+++.+++++||+++++|+++..+.+...
T Consensus       253 ~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        253 SSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            76665     7788999999999999999988788899999999988889999999999999999999999999999888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCce
Q 006115          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (660)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v  411 (660)
                      ......+.+++.++++++..+...+..+.   ...+.++++.+++++..+++++|.+++||+++++++.+++++.+|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~  404 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV  404 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence            88888888888888888777666555542   234567778888888888899999999999999999999998889999


Q ss_pred             eeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCC-CCCCCCCceEEEccCCcccccCCCchhhhhcc
Q 006115          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~-~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f  490 (660)
                      ++.||+||+++.++....+. ...+++|+|+|+++++|+|.+++... ....++.|||+|+||+++.||+++++.+.+.|
T Consensus       405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~  483 (651)
T PLN02736        405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI  483 (651)
T ss_pred             EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence            99999999987766554433 33488999999999999984332111 11123479999999999999999999999999


Q ss_pred             -cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHH
Q 006115          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK  569 (660)
Q Consensus       491 -~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~  569 (660)
                       .+|||+|||+|++|+||.|+++||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|......++|+|+++.+....
T Consensus       484 ~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~  563 (651)
T PLN02736        484 DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKA  563 (651)
T ss_pred             ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHH
Confidence             6899999999999999999999999999997689999999999999999999999999976567899999999988888


Q ss_pred             HHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          570 WAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       570 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                      |....+. ..++.++|..+++++.+.+.|...+++..|+.|++|+.|.+++++|+++..++|++||++|+++++.|+++|
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i  643 (651)
T PLN02736        564 WAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI  643 (651)
T ss_pred             HHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence            8877776 578999999999999999999999887889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 006115          649 DQLYEKL  655 (660)
Q Consensus       649 ~~~y~~~  655 (660)
                      ++||..+
T Consensus       644 ~~~y~~~  650 (651)
T PLN02736        644 SDMYAEL  650 (651)
T ss_pred             HHHHhhc
Confidence            9999865

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.3e-80  Score=616.27  Aligned_cols=629  Identities=37%  Similarity=0.658  Sum_probs=564.5

Q ss_pred             CCCCCCCCceeccccCCCCCCCC-CCCCcHHHHHHHHHHhCCCCCceeeecc--------ccCC------CCCceEEeHH
Q 006115           16 DGKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDGK------FGPYVWKTYK   80 (660)
Q Consensus        16 ~~~~~~~~~~r~~~~~~~~~~~~-~~~~ti~~~l~~~a~~~pd~~a~~~~~~--------~~~~------~~~~~~~Ty~   80 (660)
                      .+.+.|+..|||.++..++-+.+ +...|+.++|++..+++.++.++.+++.        +||+      -+++.++||.
T Consensus        14 ~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~   93 (678)
T KOG1180|consen   14 AANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYN   93 (678)
T ss_pred             CCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHH
Confidence            34567889999999877776555 6689999999999999999999977643        1332      3457799999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCE-EEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh
Q 006115           81 EVYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV  159 (660)
Q Consensus        81 el~~~~~~lA~~L~~~gv~~gd~-V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~  159 (660)
                      |+..++..+|.+|.+.|++++++ ++|+++.+.+|+.+++||++.+..+|.+...+..+.+.|-|++++++.+||+.+..
T Consensus        94 ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL  173 (678)
T KOG1180|consen   94 EVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELL  173 (678)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHH
Confidence            99999999999999999997777 99999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccccccccCccEEEEecCCcH----HHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCC
Q 006115          160 KELLSPDCRSAQRLRVMVCFTSLTA----EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDP  235 (660)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p  235 (660)
                      ..+...+ .....++.+|.++..+.    +........+..+++++++.+.++....+..+..++|+|+|||||||||.|
T Consensus       174 ~kl~~~l-~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~P  252 (678)
T KOG1180|consen  174 PKLKAPL-KQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLP  252 (678)
T ss_pred             HHHHHHH-hccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCC
Confidence            8654433 46688999999985332    222222446789999999999998776666666899999999999999999


Q ss_pred             ceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC-Ch--------HHHHH
Q 006115          236 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DL--------NALRD  306 (660)
Q Consensus       236 K~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~--------~~~~~  306 (660)
                      |||+++|.|+++.+........    .+.+.|+++.++|+.|++.+.+-+.+++.|+++-..+. +.        ...-.
T Consensus       253 KGVml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kG  328 (678)
T KOG1180|consen  253 KGVMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKG  328 (678)
T ss_pred             ceEEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcC
Confidence            9999999999999998876652    68899999999999999999999999999999987754 11        11222


Q ss_pred             HhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh-cCCCCCCcchhHHHHHHHHHHHHhCCcE
Q 006115          307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-MGYKQREASPLADLLAFRKVKARLGGRL  385 (660)
Q Consensus       307 ~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl  385 (660)
                      -+..++||+|.++|.++.++-+...+.....+.+.+.+|..+|..++..++ +|    ...++++.+.|.+++..+|.+|
T Consensus       329 D~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g----~~s~~ld~lVFkKIr~~lGG~l  404 (678)
T KOG1180|consen  329 DLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNG----PGSPLLDALVFKKIRALLGGNL  404 (678)
T ss_pred             ccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccC----CchhhHHHHHHHHHHHHhCCce
Confidence            455799999999999999999999999999999999999999988887776 44    2477999999999999999999


Q ss_pred             eEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCC
Q 006115          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (660)
Q Consensus       386 r~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~  465 (660)
                      |.+++||++++++..+.+.-.+.+|+.++||.||++...+...+.+... +.+|.|++.++++++|.++++....+..+.
T Consensus       405 R~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPr  483 (678)
T KOG1180|consen  405 RYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPR  483 (678)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCC
Confidence            9999999999999999998888999999999999999988888777666 899999999999999999999888777789


Q ss_pred             ceEEEccCCcccccCCCchhhhhcc-c-CC--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcC
Q 006115          466 GEVCVRGKTLFSGYYKNPDLTRESI-I-DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI  541 (660)
Q Consensus       466 GEi~v~g~~~~~gy~~~~~~~~~~f-~-~g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~  541 (660)
                      |||||+|+.++.||+++++.|.+.| . +|  ||+|||+|++.+||+|.++.|++|.+|+.+|+.|+++-||.+++..|.
T Consensus       484 GEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~  563 (678)
T KOG1180|consen  484 GEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPY  563 (678)
T ss_pred             ceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcc
Confidence            9999999999999999999999999 4 89  999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecC
Q 006115          542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR  620 (660)
Q Consensus       542 V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~  620 (660)
                      |+..+|++.+....++++|++++.....|+...+. ..++.++|.+.++.+.+.++|.++.+..+|..+++|..|++.++
T Consensus       564 V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e  643 (678)
T KOG1180|consen  564 VDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPE  643 (678)
T ss_pred             hhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCC
Confidence            99999999988889999999999999999999998 45999999999999999999999998899999999999999999


Q ss_pred             CCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006115          621 PFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       621 ~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~  654 (660)
                      |++.++.-+|+.-|+.|+.++..|+++|+++|.+
T Consensus       644 ~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  644 PWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             CcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999985

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=8.4e-79  Score=686.94  Aligned_cols=624  Identities=35%  Similarity=0.581  Sum_probs=517.0

Q ss_pred             ceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccc--------cC------CCCCceEEeHHHHHHHHHHH
Q 006115           24 VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DG------KFGPYVWKTYKEVYEEVLQI   89 (660)
Q Consensus        24 ~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~--------~~------~~~~~~~~Ty~el~~~~~~l   89 (660)
                      .||+...+.-.........|+.++|.++++++||++|+......        ++      ..++|+++||+||.++++++
T Consensus        40 ~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~l  119 (696)
T PLN02387         40 AIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNF  119 (696)
T ss_pred             ceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHH
Confidence            59999866323333466789999999999999999999543110        11      12567889999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcccccc
Q 006115           90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS  169 (660)
Q Consensus        90 A~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~  169 (660)
                      |++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++|++++++++|++.+....+.... ..
T Consensus       120 A~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~-~~  198 (696)
T PLN02387        120 ASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS-SQ  198 (696)
T ss_pred             HHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh-hc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987766554332 33


Q ss_pred             ccCccEEEEecCCcHHHHHH-HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHH
Q 006115          170 AQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF  248 (660)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~  248 (660)
                      ++.++.++.+++........ .........+|+++...+...........++|+++|+|||||||.||||++||++++..
T Consensus       199 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~  278 (696)
T PLN02387        199 LETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVAT  278 (696)
T ss_pred             cCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHH
Confidence            45677788776543211100 01123445678887765433222233456899999999999999999999999999988


Q ss_pred             hhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC----C-----hHHHHHHhhhhcCeEEEec
Q 006115          249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTLLAGV  319 (660)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~l~~~  319 (660)
                      +......+    ..+..+|++++++|++|++++.....++..|+++.+...    +     +..++..++.++||+++++
T Consensus       279 ~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~v  354 (696)
T PLN02387        279 VAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAV  354 (696)
T ss_pred             HHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEeh
Confidence            87754432    146789999999999999998876666777777765432    1     2345678999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCH
Q 006115          320 PRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK--QREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (660)
Q Consensus       320 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~  397 (660)
                      |.++..+.+.........+.+.+.++.+++..++..+...+.  ....+.+++.+.+.+++..+++++|.+++||+++++
T Consensus       355 P~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~  434 (696)
T PLN02387        355 PAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSG  434 (696)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCH
Confidence            999999998877777777777888888887766655532111  123567889999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCC-CCCCCceEEEccCCcc
Q 006115          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLF  476 (660)
Q Consensus       398 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~-~~g~~GEi~v~g~~~~  476 (660)
                      ++.++++..+|+++++.||+||+++.++.....+. ..+++|.|+|+++++|+|.++++.... ..++.|||+|+||.++
T Consensus       435 ~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~  513 (696)
T PLN02387        435 DTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVT  513 (696)
T ss_pred             HHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCccc
Confidence            99988888789999999999999877666554433 348999999999999999555543322 2235799999999999


Q ss_pred             cccCCCchhhhhccc---CC--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC
Q 006115          477 SGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS  551 (660)
Q Consensus       477 ~gy~~~~~~~~~~f~---~g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~  551 (660)
                      .|||++++.|.+.|.   +|  ||+|||+|++|+||+|+++||.+|+||+++|++|+|.+||++|.+||.|.+|+|+|.+
T Consensus       514 ~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~  593 (696)
T PLN02387        514 LGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADP  593 (696)
T ss_pred             chhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecC
Confidence            999999999999982   35  9999999999999999999999999998679999999999999999999999999988


Q ss_pred             CCCeEEEEEEcChhhHHHHHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccc
Q 006115          552 LKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT  630 (660)
Q Consensus       552 ~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t  630 (660)
                      ....++|+|+++.+....|....+. ..++.++|.+.++.+.+.+.+.+.+++.+|+.|++|+.|.++++||++++.-+|
T Consensus       594 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT  673 (696)
T PLN02387        594 FHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVT  673 (696)
T ss_pred             CcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCC
Confidence            7788999999999999999988887 467999999999999999999999887899999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHHHh
Q 006115          631 ATLKKKRNKLLIYYQVEIDQLYE  653 (660)
Q Consensus       631 ~~GKv~R~~l~~~~~~~l~~~y~  653 (660)
                      |++|++|+.+.+.|+++|++||.
T Consensus       674 ~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        674 AALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999995

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-78  Score=676.28  Aligned_cols=616  Identities=25%  Similarity=0.384  Sum_probs=501.7

Q ss_pred             CCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc--
Q 006115           19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS--   96 (660)
Q Consensus        19 ~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~--   96 (660)
                      ..++++||........  ......||.++|.++++++||++|++..   + .+..|+++||+||.+++.++|++|.+.  
T Consensus        40 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~  113 (746)
T PTZ00342         40 ENESSVYCMKDHKKKS--SLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEG  113 (746)
T ss_pred             CCCCCceecCchhhcc--cccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhh
Confidence            3455599977766662  2344789999999999999999999753   1 223468999999999999999999974  


Q ss_pred             -CCCCC-----------CEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhc
Q 006115           97 -GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (660)
Q Consensus        97 -gv~~g-----------d~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  164 (660)
                       |+++|           |+|+|+++|+++|+++.+||+++|++++|+++.++.+++.++|++++++++|++.+....+..
T Consensus       114 ~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~  193 (746)
T PTZ00342        114 KGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLE  193 (746)
T ss_pred             cCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHH
Confidence             99999           999999999999999999999999999999999999999999999999999998777666544


Q ss_pred             cccccccCccEEEEecCCcHH-------------------H--------------------------------------H
Q 006115          165 PDCRSAQRLRVMVCFTSLTAE-------------------Q--------------------------------------K  187 (660)
Q Consensus       165 ~~~~~~~~~~~i~~~~~~~~~-------------------~--------------------------------------~  187 (660)
                      .. ..++.++.++.++.....                   .                                      .
T Consensus       194 ~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  272 (746)
T PTZ00342        194 RK-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK  272 (746)
T ss_pred             hh-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHH
Confidence            32 344667777777642110                   0                                      0


Q ss_pred             HHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCc
Q 006115          188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (660)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (660)
                      ......+.....|+++.... ..........++|+++|+|||||||.||||++||+++++.+........   ......+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~---~~~~~~d  348 (746)
T PTZ00342        273 EKAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSI---FKKYNPK  348 (746)
T ss_pred             HHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhccc---ccCCCCC
Confidence            00001122334455544332 1112233456899999999999999999999999999988866433210   0123558


Q ss_pred             EEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006115          268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      ++++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.++.+|...+.......+...+.++++
T Consensus       349 ~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~  428 (746)
T PTZ00342        349 THLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKK  428 (746)
T ss_pred             eEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            99999999999999877788999999999877899999999999999999999999999988887777777778888888


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHH--HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCcee
Q 006115          348 LYKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  425 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  425 (660)
                      ++..+..... |.    ..++++.+  .++++++.++++||.+++||+++++++.++|+..+|+++.++||+||+++..+
T Consensus       429 a~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~  503 (746)
T PTZ00342        429 ILSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF  503 (746)
T ss_pred             HHHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceee
Confidence            8877665432 21    23444443  47888999999999999999999999999999888999999999999987766


Q ss_pred             cccCCCccccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEE
Q 006115          426 VCFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  503 (660)
Q Consensus       426 ~~~~~~~~~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~  503 (660)
                      .....+ ...+++|.|+ |+++++|+|.++...  .+.++.|||+++||.++.|||++++.|.+.| .||||+|||+|++
T Consensus       504 ~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~--~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~  580 (746)
T PTZ00342        504 VQHADD-NNTESIGGPISPNTKYKVRTWETYKA--TDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQI  580 (746)
T ss_pred             eccCCC-CCcccccCcCCCcEEEEEeccccccc--CCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEE
Confidence            555443 3458999998 999999998443221  2233579999999999999999999999999 6999999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCC------C-
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG------H-  576 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~------~-  576 (660)
                      |+||+|+++||.+|+|++++|++|+|.+||+++.+||.|.+|+|+|.+....++|+|+++.+....|...++      . 
T Consensus       581 d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~  660 (746)
T PTZ00342        581 NKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGIN  660 (746)
T ss_pred             CCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccC
Confidence            999999999999999998789999999999999999999999999987677999999999999999987653      2 


Q ss_pred             CCcHHH-----HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH---HHH
Q 006115          577 AGSFLE-----LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ---VEI  648 (660)
Q Consensus       577 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~---~~l  648 (660)
                      ..+..+     .+.+.++.+.+.+.+.+..++..|+.|+.++.|.++.++|+++. -+||+.|++|+.+.+.|+   +.|
T Consensus       661 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~-~lTpt~KlkR~~v~~~y~~~i~~i  739 (746)
T PTZ00342        661 EKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNN-YLTPTFKVKRFYVFKDYAFFIDQV  739 (746)
T ss_pred             cccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCC-ccChhhhhhHHHHHHHHHHHHHHH
Confidence            234444     34556789999999999977779999999999999999999976 699999999999999998   677


Q ss_pred             HHHHhh
Q 006115          649 DQLYEK  654 (660)
Q Consensus       649 ~~~y~~  654 (660)
                      ++||.+
T Consensus       740 ~~~y~~  745 (746)
T PTZ00342        740 KKIYKN  745 (746)
T ss_pred             HHHhcC
Confidence            888864

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-76  Score=669.88  Aligned_cols=623  Identities=30%  Similarity=0.488  Sum_probs=507.2

Q ss_pred             CCCCCceeccccCC----CCCCCCCCCCcHHHHHHHHHHhCCCCCceeeecc----------ccCC--------CCCceE
Q 006115           19 PSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPYVW   76 (660)
Q Consensus        19 ~~~~~~~r~~~~~~----~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~----------~~~~--------~~~~~~   76 (660)
                      +..+++||......    .+........|+.++|.++++++||++|+.+...          .++.        .+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (700)
T PTZ00216         42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY  121 (700)
T ss_pred             CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence            34577898765443    2222223567999999999999999999988510          0111        124689


Q ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115           77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (660)
Q Consensus        77 ~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  156 (660)
                      +||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.++|+.++++++|++.
T Consensus       122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~  201 (700)
T PTZ00216        122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG  201 (700)
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             chhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCc--cCCc-cCCCCCCCCeEEEEecCCCCC
Q 006115          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEM-EILPPQPFNICTIMYTSGTSG  233 (660)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~i~~TSGTTG  233 (660)
                      .....+.............++.++.....    .........+|.++...+.  .... ...+..++++++++|||||||
T Consensus       202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG  277 (700)
T PTZ00216        202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG  277 (700)
T ss_pred             HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence            76554433222111112245555432211    0112345678888876542  1111 123446899999999999999


Q ss_pred             CCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHH-------
Q 006115          234 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------  306 (660)
Q Consensus       234 ~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~-------  306 (660)
                      .||||++||+++++.+..+...+......+..+|++++++|++|.+++......+..|+++++.  ++..+.+       
T Consensus       278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~  355 (700)
T PTZ00216        278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHG  355 (700)
T ss_pred             cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccc
Confidence            9999999999999988765543311111246789999999999999987666667888877663  5555554       


Q ss_pred             HhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEe
Q 006115          307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR  386 (660)
Q Consensus       307 ~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr  386 (660)
                      .+++++||++.++|.+++.+.+.........+.+.+.++..++..++..+..|.    ..+.++...++.++..+++++|
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr  431 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVR  431 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEE
Confidence            688999999999999999999988877777777888888888877776666542    3567888889999999999999


Q ss_pred             EEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCc
Q 006115          387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (660)
Q Consensus       387 ~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~G  466 (660)
                      .+++||+++++++.++++..++ ++++.||+||+++..+....+.. ..+++|+|+++++++|+| +++.......++.|
T Consensus       432 ~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~G  508 (700)
T PTZ00216        432 AMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRG  508 (700)
T ss_pred             EEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCc
Confidence            9999999999999998887778 99999999999877665544433 348999999999999999 44322223344679


Q ss_pred             eEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcce-
Q 006115          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED-  544 (660)
Q Consensus       467 Ei~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~-  544 (660)
                      ||+|+|++++.|||++++.|.+.| .+|||+|||+|++|+||.|+++||.||+||.++|++|+|.+||+++.+||.|.+ 
T Consensus       509 EL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~  588 (700)
T PTZ00216        509 EILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPN  588 (700)
T ss_pred             eEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccc
Confidence            999999999999999999999999 799999999999999999999999999998558999999999999999999997 


Q ss_pred             -EEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCC
Q 006115          545 -IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD  623 (660)
Q Consensus       545 -~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~  623 (660)
                       ++|+..++...++|+|+++.+....|....+....+.++|.++++++.+.+.|.+..++..|..|..|+.|.+++++|+
T Consensus       589 ~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~  668 (700)
T PTZ00216        589 GVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWT  668 (700)
T ss_pred             eEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCC
Confidence             4566666678999999999999889988887777788999999999999999999988789999999999999999999


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006115          624 MERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       624 ~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~  654 (660)
                      ++...+|+++|++|+++++.|+++|++||..
T Consensus       669 ~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        669 PENGVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             CCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999974

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.8e-75  Score=622.18  Aligned_cols=585  Identities=36%  Similarity=0.574  Sum_probs=492.2

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++...+.++++.+|+.+++...     ..+.|+.+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d   87 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD   87 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            44588999999999999998888765     4677899999999999999999999999977999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecC----CcHHHHH-HHhhC
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS----LTAEQKE-MAVQT  193 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~-~~~~~  193 (660)
                      +||+.+|++.||+.+..+++++.++|++++++++|++...............+.........+    ....... .....
T Consensus        88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (613)
T COG1022          88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFP  167 (613)
T ss_pred             HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccc
Confidence            999999999999999999999999999999999999996554443333322221111111100    0000000 00000


Q ss_pred             CceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCC-CCCCcEEEEe
Q 006115          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSF  272 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~  272 (660)
                      ......+ . .... .......+..++|+|+|+|||||||.||||++||+|+++++..+...+     . .+++|+++++
T Consensus       168 ~~~~~~~-~-~~~~-~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~Lsf  239 (613)
T COG1022         168 DEGISLF-L-IDSA-GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSF  239 (613)
T ss_pred             cccchhh-h-hccc-ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEe
Confidence            0001011 0 1110 111122467899999999999999999999999999999999998877     5 8899999999


Q ss_pred             cChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006115          273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (660)
Q Consensus       273 ~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (660)
                      +|+.|++...+.......|+..++...++..++..+++++||.++++|.+|+.+.+.+.+.....+..++.++.++++.+
T Consensus       240 LPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~  319 (613)
T COG1022         240 LPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVA  319 (613)
T ss_pred             CcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            99999999987444333344444555599999999999999999999999999999999999999999999999998776


Q ss_pred             HHHHh-----cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecc
Q 006115          353 LAWMN-----MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (660)
Q Consensus       353 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  427 (660)
                      .....     .+....  ....|++.|+++++.+|+++|.+++||+++++++..+++.. |+++.++||+||++..++++
T Consensus       320 ~~~~~~~~~~~~~~~~--~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~  396 (613)
T COG1022         320 YKKISRALLGGGPLSW--LLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVN  396 (613)
T ss_pred             HHHHHhhhcccCCcch--hhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEc
Confidence            43332     221111  22388999999999999999999999999999999999874 89999999999999999999


Q ss_pred             cCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCC
Q 006115          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (660)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~  506 (660)
                      +++.... +++|+|+|+++++|+|             .|||+||||.++.|||++|+.|.+.| .||||+|||+|++|++
T Consensus       397 ~~~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~  462 (613)
T COG1022         397 PPDRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDED  462 (613)
T ss_pred             cccCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCC
Confidence            8877666 8999999999999999             59999999999999999999999999 6999999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCC--CCcHHHHh
Q 006115          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH--AGSFLELC  584 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~--~~~~~~~~  584 (660)
                      |+|+++||++|+|++++|++|.|+.||..+.++|.|.+++|+| ++...++|+|+++.+....|+.....  ..+..+++
T Consensus       463 g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~  541 (613)
T COG1022         463 GYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELA  541 (613)
T ss_pred             CcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHh
Confidence            9999999999999999999999999999999999999999999 66889999999999999999988775  46788999


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  656 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~~~  656 (660)
                      .+.++.+.+.+.+.+...  .+..+..+..+.+.+.+|+.+..-.|++-|++|+.+.+.|+.+++.+|.+..
T Consensus       542 ~~~~l~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~~  611 (613)
T COG1022         542 RDPKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQS  611 (613)
T ss_pred             hCHHHHHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhccc
Confidence            999999999999999876  4588899999999999999999999999999999999999999999998643

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=7.4e-74  Score=561.68  Aligned_cols=516  Identities=23%  Similarity=0.294  Sum_probs=437.5

Q ss_pred             CCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH
Q 006115           35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (660)
Q Consensus        35 ~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~  114 (660)
                      ...|-.+.|+.+.++-.+++-||+.|+++..  .+     .++||+||...++++|++|...|+++||+|++..||+.+|
T Consensus        43 ~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w  115 (596)
T KOG1177|consen   43 SQIPLDSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEW  115 (596)
T ss_pred             CCCCcccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHH
Confidence            3556678999999999999999999999862  12     4699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh-----hhhc------------cccccccCccEEE
Q 006115          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS------------PDCRSAQRLRVMV  177 (660)
Q Consensus       115 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~------------~~~~~~~~~~~i~  177 (660)
                      +.++|||.++|.+.+++||.+...+++..|++.+++++|+......     .+++            .-.+.++.+++++
T Consensus       116 ~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi  195 (596)
T KOG1177|consen  116 VLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVI  195 (596)
T ss_pred             HHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEE
Confidence            9999999999999999999999999999999999999999764221     1111            1122556778888


Q ss_pred             EecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCc-----cCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhc
Q 006115          178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV  252 (660)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~  252 (660)
                      ..++...         -.+...+++++........     -.....||+++.|.|||||||.||++.+||.+++++....
T Consensus       196 ~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~v  266 (596)
T KOG1177|consen  196 LADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAV  266 (596)
T ss_pred             ecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHH
Confidence            7773321         2345567777766544221     1234578999999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHH
Q 006115          253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG  329 (660)
Q Consensus       253 ~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~  329 (660)
                      ...+     ++...+++.+..|++|.+|... ++.++..|++++++.+  ++...+.+|.++++|.++++|+++..|++.
T Consensus       267 g~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~  341 (596)
T KOG1177|consen  267 GARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNI  341 (596)
T ss_pred             HHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcc
Confidence            8888     8888999999999999999765 6788999999999775  999999999999999999999999998753


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC
Q 006115          330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA  409 (660)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~  409 (660)
                                                           +....++++        ++|.++.||+++++++.+.+....++
T Consensus       342 -------------------------------------~~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv~~~~m  376 (596)
T KOG1177|consen  342 -------------------------------------PQKQQVDLS--------SLRKGVIGGAPVSPELLKLIVNQMNM  376 (596)
T ss_pred             -------------------------------------hhhccCchh--------hhhhheeCCCCCCHHHHHHHHHhhCc
Confidence                                                 222223343        89999999999999999999887764


Q ss_pred             -ceeeecCCCCCCCceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 006115          410 -FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT  486 (660)
Q Consensus       410 -~v~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~  486 (660)
                       .+...||+||++.+.+....++  .....++|..+++.+..++| .++...+.+  ..||||+||.+.+.|||++++.+
T Consensus       377 ~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT  453 (596)
T KOG1177|consen  377 KDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEEEKT  453 (596)
T ss_pred             eeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCcccc
Confidence             4788999999998877766554  33447899999999999999 666555544  67999999999999999999999


Q ss_pred             hhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEc
Q 006115          487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVP  562 (660)
Q Consensus       487 ~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~  562 (660)
                      .+.. .|.||+|||.|.+|++|.++++||.+|+|+ ++|++|+|.+||+.|.+||.|.++.|+|++|..   .++|+|.+
T Consensus       454 ~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRL  532 (596)
T KOG1177|consen  454 KETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRL  532 (596)
T ss_pred             hhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEe
Confidence            8888 899999999999999999999999999999 799999999999999999999999999998774   89999999


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      ..+...                      ....++|+.+|+ .++.+|++|++|+++++      +|+|-+|||+|-++|+
T Consensus       533 qe~~e~----------------------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~------FPlT~tGKIqKFeir~  583 (596)
T KOG1177|consen  533 QEGAEG----------------------KTTAETLKAMCK-GKLAHFKIPKYFVFVDE------FPLTTTGKIQKFEIRE  583 (596)
T ss_pred             eccccc----------------------cccHHHHHHHHh-cccccccCCcEEEEecc------CcccccccchhHHHHH
Confidence            986511                      134567777886 77999999999999855      5999999999999999


Q ss_pred             HHHHHHH
Q 006115          643 YYQVEID  649 (660)
Q Consensus       643 ~~~~~l~  649 (660)
                      +++.++.
T Consensus       584 ~~k~~l~  590 (596)
T KOG1177|consen  584 MSKGHLG  590 (596)
T ss_pred             HHHhhcc
Confidence            9997653

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-74  Score=607.38  Aligned_cols=504  Identities=27%  Similarity=0.360  Sum_probs=407.9

Q ss_pred             HHHHHHHHHHhCCCC-CceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCChhhHHHHHHH
Q 006115           44 AWDIFSMSVQKYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        44 i~~~l~~~a~~~pd~-~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~g--v~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +..+.+. +..++++ +.+++.   +..   -+.+||.|+.+++.++|.+|.+.|  +++||+|++++||++++..+++|
T Consensus        19 ~~~l~~~-~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la   91 (537)
T KOG1176|consen   19 ITFLGRP-AFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALA   91 (537)
T ss_pred             ccccccc-ccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            3334433 3334444 777775   321   168999999999999999999875  89999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee-
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-  199 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-  199 (660)
                      |+.+|+++.++||.+.+.++.++++.++++++|++......+.+......   ..++.+.......   .........+ 
T Consensus        92 ~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~~~~  165 (537)
T KOG1176|consen   92 VPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVEDLDA  165 (537)
T ss_pred             HHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcc---ccccccccccc
Confidence            99999999999999999999999999999999999998887755443221   3344443321000   0000001111 


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      +..+........  ..+...+|++.++|||||||.||||++||++++.+........     .+...++.++.+|++|.+
T Consensus       166 ~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~  238 (537)
T KOG1176|consen  166 FEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIY  238 (537)
T ss_pred             hhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHh
Confidence            333333322222  5566789999999999999999999999999999877655544     677799999999999999


Q ss_pred             HHHHHHHH-hhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115          280 DRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       280 g~~~~~~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      |+...+.+ +..|+++++... ++..+++.+++|++|++.++|.++..|++.                            
T Consensus       239 Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~----------------------------  290 (537)
T KOG1176|consen  239 GLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS----------------------------  290 (537)
T ss_pred             HHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC----------------------------
Confidence            99987775 555666666665 999999999999999999999999998763                            


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCccccC
Q 006115          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (660)
                               +.....++        +++|.+.+||+++++++.+.+.+.++ ..+.+.||+||+++.++.+...+...++
T Consensus       291 ---------p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~  353 (537)
T KOG1176|consen  291 ---------PIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPG  353 (537)
T ss_pred             ---------CccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCccc
Confidence                     22233333        49999999999999999999999997 8999999999999888877766656679


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCCcEEEEecc
Q 006115          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK  515 (660)
Q Consensus       437 ~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~-g~~~TGDl~~~~~~G~l~~~GR~  515 (660)
                      ++|.++++..+++.+ +.+  ..++.++.||||++|+.++.||++||+.|++.|.+ |||+|||+|++|+||+|++.+|+
T Consensus       354 svG~~~~g~~~~v~~-e~g--~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~  430 (537)
T KOG1176|consen  354 SVGRLLPGVRVKVLD-ETG--VSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRS  430 (537)
T ss_pred             ccCccccceEEEeeC-CCC--CCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecch
Confidence            999999988888877 444  45556688999999999999999999999999955 99999999999999999999999


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006115          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      +|+||. +|++|+|.|||++|.+||.|.||+|+|.+|+   +.++|+|+.+++.        ..        .       
T Consensus       431 KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~--------~l--------t-------  486 (537)
T KOG1176|consen  431 KDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS--------TL--------T-------  486 (537)
T ss_pred             hhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC--------cC--------C-------
Confidence            999996 9999999999999999999999999999987   4899999999753        11        1       


Q ss_pred             HHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                       .++|.+++ +++|+.|++|+.++|+++      +|+|++||++|+.|++++.+.
T Consensus       487 -e~di~~~v-~k~l~~y~~~~~V~Fvd~------lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  487 -EKDIIEYV-RKKLPAYKLPGGVVFVDE------LPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             -HHHHHHHH-HhhCChhhccCeEEEecc------CCCCCcchHHHHHHHHHHHhc
Confidence             23444444 488999999999999854      599999999999999998763

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1e-71  Score=585.73  Aligned_cols=500  Identities=21%  Similarity=0.231  Sum_probs=409.6

Q ss_pred             CCcHHHHHHHHHHh-CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHH
Q 006115           41 LNTAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        41 ~~ti~~~l~~~a~~-~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      .|--.++++++... .+|++|+++.   +..++. +++||+||++.++++|+.|++ .|+ +||+|++++|+.++.++++
T Consensus         8 lN~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~   82 (528)
T COG0365           8 LNLALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIAL   82 (528)
T ss_pred             eechhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHH
Confidence            34445567777763 5789999997   444344 899999999999999999997 578 9999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccc--cCccEEEEecCCcHHHHHHHhhCCce
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |||+++|++.+|+.+.++++.+...+++++++++|+++..............  ..+..+++.....             
T Consensus        83 LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-------------  149 (528)
T COG0365          83 LATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-------------  149 (528)
T ss_pred             HHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-------------
Confidence            9999999999999999999999999999999999999887654432111110  0000022222211             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccc-ccccccCCCCCCcEEEEecCh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~  275 (660)
                       ..|.++..... ...+......+|+++++|||||||+||+|+++|..++........ .+     .+.++|++++..++
T Consensus       150 -~~~~~~~~~~~-~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~  222 (528)
T COG0365         150 -LWYDEAVEKAS-EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDP  222 (528)
T ss_pred             -ccHHHHhhccC-CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCc
Confidence             46666665542 233344488999999999999999999999999977776655443 33     66799999999999


Q ss_pred             hhHHHHHH-HHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006115          276 AHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      .|.+|... ++.++.+|+++++++.    +++.+++.|+++++|.+++.|+.+++|.+...                   
T Consensus       223 GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-------------------  283 (528)
T COG0365         223 GWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-------------------  283 (528)
T ss_pred             hhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-------------------
Confidence            99999987 7888999999999876    38899999999999999999999999875311                   


Q ss_pred             HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006115          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                        ..+.++        ++||.+.+.||+|+++.++++.+.+|++|.+.||+||+++......+ 
T Consensus       284 ------------------~~~~dl--------ssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-  336 (528)
T COG0365         284 ------------------GEPYDL--------SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-  336 (528)
T ss_pred             ------------------cccccc--------hhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-
Confidence                              222333        49999999999999999999999999999999999999966555544 


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006115          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~--~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~  508 (660)
                      . ..+++.|.|+||+++.++| ++++  +++.++ |+|.++.+  +++++||++++.+.+.+.+.||.|||.+++|+||+
T Consensus       337 ~-~~~g~~g~p~pG~~~~vvd-d~g~--~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy  411 (528)
T COG0365         337 P-VKNGSSGLPLPGYAVRRVD-DEGN--PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGY  411 (528)
T ss_pred             C-cCCCCCCCCCCCceeEEEC-CCCC--cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCC
Confidence            3 2335669999999999999 6643  444556 99999986  89999999999999998666999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      ++++||.||+|++ .|+++.+.|||++|.+||.|.||+|+|.+++   +.+.|||+++++..                  
T Consensus       412 ~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~------------------  472 (528)
T COG0365         412 FWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVE------------------  472 (528)
T ss_pred             EEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCC------------------
Confidence            9999999999997 7999999999999999999999999999876   37999999998751                  


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      ..    .+.++|++++++...| +..|+.|.|+++      +|+|.|||++|+.||+.+.+
T Consensus       473 ~~----~L~~ei~~~vr~~~~~-~~~p~~i~fv~~------LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         473 PN----ELAEEIRRHVARNIGP-HAIPRKIRFVDE------LPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             hH----HHHHHHHHHHHhccCc-ccCCceEEEecC------CCCCCcccHHHHHHHHHHhh
Confidence            11    5666777777645555 999999999855      59999999999999998874

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-70  Score=602.84  Aligned_cols=507  Identities=28%  Similarity=0.398  Sum_probs=415.1

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++.+.+.++++++|+++|+.+.   +...    ++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            44578999999999999999999986   4321    5999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcee-
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-  197 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-  197 (660)
                      |||+++|++++|+||.+...++.++++.+++++++++....... ............+........           .. 
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~  148 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALL-EAVAEALPVVLVVLLVGDADD-----------RLP  148 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHH-HHHhccCCcceEEEecccccc-----------ccc
Confidence            99999999999999999999999999999999999998732222 222211122222222221110           00 


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCC--CCCCcEEEEecCh
Q 006115          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL  275 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~p~  275 (660)
                      .++..................++++++++|||||||.||+|++||++++.+...+...+     .  ++..|++++++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl  223 (534)
T COG0318         149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL  223 (534)
T ss_pred             ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence            13444433221222222236799999999999999999999999999999988887777     5  8899999999999


Q ss_pred             hhHHHHHHHHHH-hhcCcEEEEec---CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115          276 AHILDRVIEEYF-FRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       276 ~~~~g~~~~~~~-l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      +|.+|+...+.+ ++.|+++++.+   +++..++..+.++++|+++++|+++..++.+.....                 
T Consensus       224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----------------  286 (534)
T COG0318         224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----------------  286 (534)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------
Confidence            999999976655 89999999987   389999999999999999999999999876422111                 


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCC
Q 006115          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                          .+++       +++|.+++||+++++++.+.+.+.++ ..+.+.||+||++..++.....
T Consensus       287 --------------------~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  339 (534)
T COG0318         287 --------------------DDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD  339 (534)
T ss_pred             --------------------cccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence                                0111       13999999999999999999999997 5799999999999887777666


Q ss_pred             C-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCCc
Q 006115          431 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGV  508 (660)
Q Consensus       431 ~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~-g~~~TGDl~~~~~~G~  508 (660)
                      . ....+++|.|+|+++++|+| ++++ .+.+ |+.|||+|+||+++.|||++++.|.+.|.+ |||+|||+|++|++|+
T Consensus       340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~  416 (534)
T COG0318         340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY  416 (534)
T ss_pred             hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCcc
Confidence            5 33457789999999999999 6655 3333 779999999999999999999999998875 9999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++.||.+|+|+. +|++|+|.+||+++.+||.|.+|+|+|.+++   +.++|+|+++++..      ..          
T Consensus       417 l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~------~~----------  479 (534)
T COG0318         417 LYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD------AE----------  479 (534)
T ss_pred             EEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC------CC----------
Confidence            9999999999995 9999999999999999999999999999876   48999999987530      00          


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            ...++|.++++ ..++.|++|+.+.++      +++|+|++||++|+.|++.+..
T Consensus       480 ------~~~~~i~~~~~-~~l~~~~~P~~v~~v------~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         480 ------LTAEELRAFLR-KRLALYKVPRIVVFV------DELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             ------CCHHHHHHHHH-hhhhcccCCeEEEEe------CCCCCCCchhhhHHHHHHHHHh
Confidence                  01233444443 578999999999998      5569999999999999999987

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=2.3e-67  Score=589.11  Aligned_cols=540  Identities=20%  Similarity=0.260  Sum_probs=427.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.+.|+++++++||++|+++.   + ..+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  113 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA  113 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            478999999999999999999864   2 234467999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCC-----hhhHHHHhhcccceEEEEccch-hhhhhccccccccCccEEEEecCCcHHHHHHHhhCC
Q 006115          121 CNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      |+++|++++|++|.++     .+++.++++.++++++|+++.. ..........  ... .++.......         .
T Consensus       114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~  181 (614)
T PRK08180        114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------G  181 (614)
T ss_pred             HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------C
Confidence            9999999999999988     7899999999999999998642 2211111111  111 2222221100         0


Q ss_pred             ceeeeHHHHHhcCccCC--ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCC--CCcEEE
Q 006115          195 IKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYL  270 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~~l  270 (660)
                      ....++.++........  .......++++++|+|||||||.||+|++||++++..+......+     ...  .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l  256 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV  256 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence            01234555554321111  111234678999999999999999999999999998887765544     332  568999


Q ss_pred             EecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006115          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      +++|++|.+|+.. ++.+++.|+++++.+.     .+..+++.++++++|+++++|.++..|++.+.....         
T Consensus       257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~---------  327 (614)
T PRK08180        257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA---------  327 (614)
T ss_pred             EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh---------
Confidence            9999999999865 5677999999998753     345788899999999999999999998765322110         


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----cC--CceeeecCCC
Q 006115          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLT  418 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~----~~--~~v~~~YG~t  418 (660)
                                                      .....+++||.+++||+++++++.+.+++.    +|  +++++.||+|
T Consensus       328 --------------------------------~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  375 (614)
T PRK08180        328 --------------------------------LRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT  375 (614)
T ss_pred             --------------------------------hhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence                                            011122599999999999999999998874    33  7899999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcccc
Q 006115          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~T  497 (660)
                      |++.+++...... ..++++|+|++|+++++++ +         +..|||+|+|+.++.||+++++.+.+.| .+|||+|
T Consensus       376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            9987766544332 3458999999999999998 2         2369999999999999999999999999 6899999


Q ss_pred             CceEEE----CCCCcEEEEeccCCeeEcCCCeeec--chhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHH
Q 006115          498 GDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA  571 (660)
Q Consensus       498 GDl~~~----~~~G~l~~~GR~~d~i~~~~G~~v~--~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~  571 (660)
                      ||+|++    |++|.|+++||.+|+|++++|++|+  |.|+|.++.+||.|.+|+|+|.++ ..+.|+|+++++....|.
T Consensus       445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~  523 (614)
T PRK08180        445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLA  523 (614)
T ss_pred             cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHH
Confidence            999999    4689999999999999877899777  778889999999999999999884 467899999987655554


Q ss_pred             HHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006115          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~  651 (660)
                      ... ...+..+.++.+++++++++.|.++.. ...+.+.+|+++.+++++|...+..+|++||++|+++.+.|+++|++|
T Consensus       524 ~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~l  601 (614)
T PRK08180        524 GLL-ADASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEAL  601 (614)
T ss_pred             hhc-ccCCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHH
Confidence            333 122334455678889999999988875 344556699999999998888889999999999999999999999999


Q ss_pred             Hhhhc
Q 006115          652 YEKLA  656 (660)
Q Consensus       652 y~~~~  656 (660)
                      |++..
T Consensus       602 Y~~~~  606 (614)
T PRK08180        602 YADEP  606 (614)
T ss_pred             hCCCC
Confidence            99653

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-66  Score=583.30  Aligned_cols=563  Identities=21%  Similarity=0.253  Sum_probs=435.4

Q ss_pred             CCCCCCCCCceecccc----CCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHH
Q 006115           15 KDGKPSVGPVYRNLLA----SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV   90 (660)
Q Consensus        15 ~~~~~~~~~~~r~~~~----~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA   90 (660)
                      -..+|.....+|....    -.++|.. ....++.++|+++++++||++|+++.   +...+.++++||+||.++++++|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA   94 (624)
T PRK12582         19 LNWKPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALA   94 (624)
T ss_pred             cccCCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHH
Confidence            3455566666666422    2233333 23568999999999999999999875   33245578999999999999999


Q ss_pred             HHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCCh-----hhHHHHhhcccceEEEEccch-hhhhhc
Q 006115           91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELLS  164 (660)
Q Consensus        91 ~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~  164 (660)
                      ++|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.     +++.++++.++++++|+++.. ......
T Consensus        95 ~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  174 (624)
T PRK12582         95 QALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALA  174 (624)
T ss_pred             HHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875     899999999999999998642 221111


Q ss_pred             cccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCC--ccCCCCCCCCeEEEEecCCCCCCCceeeecc
Q 006115          165 PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTH  242 (660)
Q Consensus       165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th  242 (660)
                      ....  .... ++..+....         ......+.++........  .......++++++|+|||||||.||+|++||
T Consensus       175 ~~~~--~~~~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th  242 (624)
T PRK12582        175 ALDL--LDVT-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ  242 (624)
T ss_pred             hhhh--cCce-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeH
Confidence            1111  1122 233322110         011234555544321110  1112346789999999999999999999999


Q ss_pred             HhHHHHhhhcccccccccCCCC---CCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--C---hHHHHHHhhhhcC
Q 006115          243 ETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELKP  313 (660)
Q Consensus       243 ~~l~~~~~~~~~~~~~~~~~~~---~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~---~~~~~~~i~~~~~  313 (660)
                      ++++..+.......     ...   ..+++++++|++|.+|+.. ++.++..|+++++.+.  +   ...+++.++++++
T Consensus       243 ~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~  317 (624)
T PRK12582        243 RMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISP  317 (624)
T ss_pred             HHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCC
Confidence            99988776654333     222   3589999999999999876 4567889999988753  2   3456778889999


Q ss_pred             eEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccC
Q 006115          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (660)
Q Consensus       314 t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~  393 (660)
                      |+++++|+++..|++.....                                 +.....++        ++||.+++||+
T Consensus       318 t~~~~vP~~~~~l~~~~~~~---------------------------------~~~~~~~~--------~slr~i~~gGa  356 (624)
T PRK12582        318 TVYGNVPAGYAMLAEAMEKD---------------------------------DALRRSFF--------KNLRLMAYGGA  356 (624)
T ss_pred             eEEeccCHHHHHHHHHHhhC---------------------------------HHHHHHHh--------hheeEEEecCC
Confidence            99999999999886543211                                 00111112        48999999999


Q ss_pred             CCCHHHHHHHHHhc------CCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCce
Q 006115          394 PLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (660)
Q Consensus       394 ~l~~~~~~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GE  467 (660)
                      ++++++.+.+++.+      ++++++.||+||++.++....... ...+++|+|++|+++++++          .|+.||
T Consensus       357 ~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~GE  425 (624)
T PRK12582        357 TLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKYE  425 (624)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCceE
Confidence            99999999998753      368999999999987665333222 3347899999999999975          346899


Q ss_pred             EEEccCCcccccCCCchhhhhcc-cCCccccCceEEE-C---CCCcEEEEeccCCeeEcCCCeeecchhHH--HHHhcCc
Q 006115          468 VCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVAP  540 (660)
Q Consensus       468 i~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~-~---~~G~l~~~GR~~d~i~~~~G~~v~~~~iE--~~l~~~p  540 (660)
                      |+|+|+.++.||+++++.+.+.| .+|||+|||+|++ |   ++|+|+++||.+|+|++++|++|+|.+||  .++.+||
T Consensus       426 l~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p  505 (624)
T PRK12582        426 VRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSP  505 (624)
T ss_pred             EEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCc
Confidence            99999999999999999999999 6899999999998 4   46999999999999998889999998885  6778999


Q ss_pred             CcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCce-eeeEEEEec
Q 006115          541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFE-HIKGVILDP  619 (660)
Q Consensus       541 ~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~p~~i~~~~  619 (660)
                      .|.+|+|+|.+ ...+.++|++.......+....+.  ...+.++.+++.+.+++.|.++++  .+|.+. +|+++.+++
T Consensus       506 ~V~~a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~  580 (624)
T PRK12582        506 VIHDAVVAGQD-RAFIGLLAWPNPAACRQLAGDPDA--APEDVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLMT  580 (624)
T ss_pred             chheEEEEcCC-CCcEEEEEecCHHHHHHHHhcCCC--CHHHHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEeC
Confidence            99999999986 566778888887765444332221  234455678899999999988865  788998 999999999


Q ss_pred             CCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006115          620 RPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  655 (660)
Q Consensus       620 ~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~~  655 (660)
                      ++|+.+..++|++||++|+++.+.|+++||+||+..
T Consensus       581 ~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~~  616 (624)
T PRK12582        581 EPPSIDAGEITDKGYINQRAVLERRAALVERLYAEP  616 (624)
T ss_pred             CCCCccCCcCCccccccHHHHHHHHHHHHHHHhcCC
Confidence            999888999999999999999999999999999854

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.5e-68  Score=595.27  Aligned_cols=531  Identities=18%  Similarity=0.225  Sum_probs=404.4

Q ss_pred             CCCCcHHHHHHHHHHh--CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115           39 SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~--~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~  116 (660)
                      +..|+..++++++++.  +||++|+++.   ....+..+++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus        56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~  132 (647)
T PTZ00237         56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI  132 (647)
T ss_pred             CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence            5568888999988865  7999999875   3323335789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh---------hhhhccccccccCccEEEEecCCc---H
Q 006115          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLT---A  184 (660)
Q Consensus       117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~---~  184 (660)
                      ++|||+++|++++|+++.++.+++.++|++++++++|+++...         ..+.+...........++......   .
T Consensus       133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~  212 (647)
T PTZ00237        133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE  212 (647)
T ss_pred             HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence            9999999999999999999999999999999999999976321         111111110000122344331110   0


Q ss_pred             HHHHH--HhhCCceeeeHHHHHhcCc----cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHh-HHHHhhhcccccc
Q 006115          185 EQKEM--AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLD  257 (660)
Q Consensus       185 ~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~-l~~~~~~~~~~~~  257 (660)
                      .....  ..........|++++....    ..........++++++|+|||||||.||+|+++|.+ +......+...+ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-  291 (647)
T PTZ00237        213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII-  291 (647)
T ss_pred             cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence            00000  0000011235666654321    111222345789999999999999999999999998 444333222223 


Q ss_pred             cccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCC-------hHHHHHHhhhhcCeEEEechHHHHHHHHHH
Q 006115          258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (660)
Q Consensus       258 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~  330 (660)
                          ....++++++..|+.|..+...++.++..|+++++++.+       +..+++.++++++|+++++|++++.|.+..
T Consensus       292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  367 (647)
T PTZ00237        292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD  367 (647)
T ss_pred             ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence                566789999999999987666677889999999998642       578999999999999999999999886531


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc
Q 006115          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF  410 (660)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~  410 (660)
                      ....                                ......++        ++||.++++|+++++++.+++++.+|++
T Consensus       368 ~~~~--------------------------------~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~~  407 (647)
T PTZ00237        368 PEAT--------------------------------IIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKIK  407 (647)
T ss_pred             cccc--------------------------------ccccccCc--------chheEEEecCccCCHHHHHHHHHhcCCC
Confidence            1000                                00001112        4899999999999999999999999999


Q ss_pred             eeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhh
Q 006115          411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTR  487 (660)
Q Consensus       411 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~---~~~~gy~~~~~~~~  487 (660)
                      +++.||+||+++.++..........+++|.|+++++++|+| +++.  +++.|+.|||++++|   +++.|||++++.+.
T Consensus       408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~--~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~  484 (647)
T PTZ00237        408 SSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGK--ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK  484 (647)
T ss_pred             EEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCC--CCCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence            99999999998765443332223337899999999999999 6554  345678999999986   78999999999998


Q ss_pred             hccc--CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 006115          488 ESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (660)
Q Consensus       488 ~~f~--~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~  562 (660)
                      +.|.  +|||+|||+|++|++|+++++||.||+|++ +|++|+|.+||++|.+||.|.||+|+|.+++   +.++|+|++
T Consensus       485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~  563 (647)
T PTZ00237        485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVL  563 (647)
T ss_pred             HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEe
Confidence            8773  799999999999999999999999999996 7999999999999999999999999998865   478999998


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++..       +...      +    .+.+.++|+++++ +.|+.|++|+.|+++++      +|+|++||++|+.|++
T Consensus       564 ~~~~~-------~~~~------~----~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~------lP~T~sGKi~R~~Lr~  619 (647)
T PTZ00237        564 KQDQS-------NQSI------D----LNKLKNEINNIIT-QDIESLAVLRKIIIVNQ------LPKTKTGKIPRQIISK  619 (647)
T ss_pred             ccCcc-------ccCC------C----HHHHHHHHHHHHH-hhcCccccCcEEEEcCC------CCCCCCccEeHHHHHH
Confidence            75320       0000      1    1234556666665 68999999999999854      5999999999999999


Q ss_pred             HHH
Q 006115          643 YYQ  645 (660)
Q Consensus       643 ~~~  645 (660)
                      ++.
T Consensus       620 ~~~  622 (647)
T PTZ00237        620 FLN  622 (647)
T ss_pred             HHc
Confidence            874

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=6.2e-67  Score=588.68  Aligned_cols=527  Identities=17%  Similarity=0.164  Sum_probs=406.9

Q ss_pred             CCCC-CCCcHHHHHHHHHH-hCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh
Q 006115           36 SVDS-DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        36 ~~~~-~~~ti~~~l~~~a~-~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~  113 (660)
                      +.++ ..|...++|+++++ .+|+++|+++.   ....+..+++||+||.+++.++|++|++.|+++||+|+++++|+++
T Consensus        81 wf~g~~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e  157 (666)
T PLN02654         81 WFKGGKTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLME  157 (666)
T ss_pred             ccCCCEeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence            4443 34666888888876 48999999875   3334445789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhh---------cccccc---ccCccEEEEecC
Q 006115          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPDCRS---AQRLRVMVCFTS  181 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~~~~---~~~~~~i~~~~~  181 (660)
                      +++++|||+++|++++|+++.++.+++..+|+.++++++|+++.......         ......   ......++....
T Consensus       158 ~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
T PLN02654        158 LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYEN  237 (666)
T ss_pred             HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecc
Confidence            99999999999999999999999999999999999999999876432110         000000   001111222221


Q ss_pred             CcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHh-hhccccccccc
Q 006115          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFE  260 (660)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~  260 (660)
                      ..................|+++.... ....+.....++|+++|+|||||||.||||+++|.+++... ..+...+    
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~----  312 (666)
T PLN02654        238 QLAMKREDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF----  312 (666)
T ss_pred             cccccccccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc----
Confidence            10000000000000122355544322 11122334578999999999999999999999999976443 3334444    


Q ss_pred             CCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHH
Q 006115          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (660)
Q Consensus       261 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~  334 (660)
                       ++.++|++++..|+.|.+|... ++.++..|+++++++.     ++..+++.|+++++|+++++|++++.|.+..... 
T Consensus       313 -~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-  390 (666)
T PLN02654        313 -DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-  390 (666)
T ss_pred             -CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc-
Confidence             7889999999999999998765 5778999999999863     6899999999999999999999999886531100 


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---Cce
Q 006115          335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFL  411 (660)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v  411 (660)
                                                        ....++        ++||.++++|++++++..+++.+.+|   +++
T Consensus       391 ----------------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i  428 (666)
T PLN02654        391 ----------------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI  428 (666)
T ss_pred             ----------------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCce
Confidence                                              011112        38999999999999999999999887   789


Q ss_pred             eeecCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhh
Q 006115          412 VQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRE  488 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~  488 (660)
                      .+.||+||+++......+.. ...++++|.|++|++++|+| +++..  ++.++.|||++++  |+++.|||++++.+..
T Consensus       429 ~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~--~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~  505 (666)
T PLN02654        429 SDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE--IEGECSGYLCVKKSWPGAFRTLYGDHERYET  505 (666)
T ss_pred             eccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC--CCCCCceEEEEcCCCchhhhhhcCChHHHHH
Confidence            99999999987665443322 33458899999999999999 66553  4455789999999  7899999999998877


Q ss_pred             cc---cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 006115          489 SI---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (660)
Q Consensus       489 ~f---~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~  562 (660)
                      .+   .+|||+|||+|++|+||.++++||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++   +.++|+|++
T Consensus       506 ~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl  584 (666)
T PLN02654        506 TYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL  584 (666)
T ss_pred             hhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEE
Confidence            65   3899999999999999999999999999996 7999999999999999999999999998765   379999998


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++..                 ...    .+.++|+++++ ..|+.|++|+.|++++      .+|+|.+||++|++|++
T Consensus       585 ~~~~~-----------------~~~----~l~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~r~~l~~  636 (666)
T PLN02654        585 VEGVP-----------------YSE----ELRKSLILTVR-NQIGAFAAPDKIHWAP------GLPKTRSGKIMRRILRK  636 (666)
T ss_pred             CCCCC-----------------CCH----HHHHHHHHHHH-HhCCCCcCCCEEEECC------CCCCCCCcCchHHHHHH
Confidence            87530                 112    23445555554 7899999999999974      46999999999999999


Q ss_pred             HHHH
Q 006115          643 YYQV  646 (660)
Q Consensus       643 ~~~~  646 (660)
                      .+.+
T Consensus       637 ~~~~  640 (666)
T PLN02654        637 IASR  640 (666)
T ss_pred             HHcC
Confidence            8754

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=7.2e-67  Score=580.25  Aligned_cols=525  Identities=20%  Similarity=0.169  Sum_probs=404.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      -++.++|++.++++||++|++..   +      +++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus         7 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~   77 (563)
T PLN02860          7 AHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAV   77 (563)
T ss_pred             hHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            68999999999999999999753   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++++.++++++++++..............+.+..++..++......    ........++
T Consensus        78 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~  153 (563)
T PLN02860         78 ACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLTTE  153 (563)
T ss_pred             hhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccccc
Confidence            999999999999999999999999999999999876432211111112223333333332110000    0000011111


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  281 (660)
                      ++...............++++++++|||||||.||+|+++|+++..........+     ++..+|+++...|++|.+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g~  228 (563)
T PLN02860        154 MLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGGL  228 (563)
T ss_pred             hhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhccH
Confidence            1111110011111234678999999999999999999999999988766655444     78889999999999999998


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Q 006115          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++.......                         
T Consensus       229 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------  283 (563)
T PLN02860        229 SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT-------------------------  283 (563)
T ss_pred             HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc-------------------------
Confidence            878888999999988876 999999999999999999999999988754211100                         


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--------
Q 006115          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--------  431 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--------  431 (660)
                                        ....++||.+++||+++++.+.+.+++.+ ++++++.||+||+++.++......        
T Consensus       284 ------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  345 (563)
T PLN02860        284 ------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQ  345 (563)
T ss_pred             ------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchh
Confidence                              00114899999999999999999999988 789999999999986554322111        


Q ss_pred             --------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccc
Q 006115          432 --------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (660)
Q Consensus       432 --------------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~  496 (660)
                                    .....++|+|++++++++++ ++       .++.|||+++|+.++.||+++++.+...| .+|||+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~  417 (563)
T PLN02860        346 TLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLD  417 (563)
T ss_pred             hhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeEE
Confidence                          11123689999999999998 43       35789999999999999999999999888 689999


Q ss_pred             cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006115          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (660)
                      |||+|++|++|++++.||.+|+|++ +|++|+|.+||+++.+||+|.+|+|++.++.   ..++|+|+++++...  .. 
T Consensus       418 TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~--~~-  493 (563)
T PLN02860        418 TGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIW--SD-  493 (563)
T ss_pred             ccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcccc--cc-
Confidence            9999999999999999999999996 8999999999999999999999999997765   478999998764210  00 


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006115          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~  651 (660)
                          .+.......   .....+.|.+++++..|+.|++|+.++++.     +.+|+|++||++|++|++++.+.++.+
T Consensus       494 ----~~~~~~~~~---~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~-----~~lP~t~~GKi~r~~L~~~~~~~~~~~  559 (563)
T PLN02860        494 ----NEKENAKKN---LTLSSETLRHHCREKNLSRFKIPKLFVQWR-----KPFPLTTTGKIRRDEVRREVLSHLQSL  559 (563)
T ss_pred             ----ccchhhccc---ccccHHHHHHHHhhCcccccccceEEEEEe-----cCCCCCcccchhHHHHHHHHHHHHhcc
Confidence                000000000   011124566666544699999999988763     335899999999999999988777654

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=5e-66  Score=580.75  Aligned_cols=520  Identities=17%  Similarity=0.198  Sum_probs=409.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +..|...++|+++++++||++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus        54 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  130 (625)
T TIGR02188        54 GELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM  130 (625)
T ss_pred             CEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            44577788888899899999999986   433455689999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh---------hhhcccccccc-CccEEEEecCCcHHHHH
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKE  188 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  188 (660)
                      |||+++|++++|+++.++.+++.++++.++++++|+++....         .+.... ...+ .++.++.++......  
T Consensus       131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--  207 (625)
T TIGR02188       131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEAL-EKCPVSVEHVLVVRRTGNPV--  207 (625)
T ss_pred             HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHH-HhCCCCccEEEEEcCCCCCc--
Confidence            999999999999999999999999999999999999876321         111111 1112 344444443221100  


Q ss_pred             HHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCc
Q 006115          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDD  267 (660)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d  267 (660)
                       .. .......|.++.... ..........++++++|+|||||||.||+|+++|.+++..... ....+     ++.++|
T Consensus       208 -~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d  279 (625)
T TIGR02188       208 -PW-VEGRDVWWHDLMAKA-SAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGD  279 (625)
T ss_pred             -Cc-cccccccHHHHHhhc-CCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCc
Confidence             00 001123455555432 1222233457889999999999999999999999998755433 22233     678899


Q ss_pred             EEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       268 ~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ++++..|++|..+... ++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+.....        
T Consensus       280 ~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------  351 (625)
T TIGR02188       280 IFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW--------  351 (625)
T ss_pred             EEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------
Confidence            9999999999988754 6778999999999753     6899999999999999999999999886531110        


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCC
Q 006115          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  418 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~t  418 (660)
                                                 .+..+        +++||.++++|+++++++.+++.+.++   +++++.||+|
T Consensus       352 ---------------------------~~~~~--------l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~T  396 (625)
T TIGR02188       352 ---------------------------VKKHD--------LSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQT  396 (625)
T ss_pred             ---------------------------cccCC--------ccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccccc
Confidence                                       01111        248999999999999999999998875   7899999999


Q ss_pred             CCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 006115          419 ETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID  492 (660)
Q Consensus       419 E~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f---~~  492 (660)
                      |+++.++....+. ...++++|+|++|++++|+| +++...+ +.|+.|||+|+|  |+++.|||++++.+...+   .+
T Consensus       397 E~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~  474 (625)
T TIGR02188       397 ETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFP  474 (625)
T ss_pred             ccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCC
Confidence            9998765543331 23458899999999999999 6655432 267899999999  689999999998877765   47


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006115          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      |||+|||+|++|++|+++++||.||+|++ +|++|+|.+||++|.+||.|.||+|++.+++   +.++|+|++.++..  
T Consensus       475 g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~--  551 (625)
T TIGR02188       475 GYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYE--  551 (625)
T ss_pred             CEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCC--
Confidence            99999999999999999999999999996 7999999999999999999999999997755   47899999887531  


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                                     ...    .+.++|+++++ ..|+.+++|+.|+++      +.+|+|++||++|+.|++.+..
T Consensus       552 ---------------~~~----~~~~~l~~~~~-~~l~~~~~P~~i~~v------~~lP~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       552 ---------------PDD----ELRKELRKHVR-KEIGPIAKPDKIRFV------PGLPKTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             ---------------CCH----HHHHHHHHHHH-hhcCCCccCcEEEEC------CCCCCCCCccchHHHHHHHHcC
Confidence                           111    23445556654 789999999999987      4469999999999999988754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=4.4e-66  Score=580.33  Aligned_cols=526  Identities=17%  Similarity=0.148  Sum_probs=405.3

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +..|.+.++|+++++.+|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~  125 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM  125 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44577788999988889999999875   433445578999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh---------hhhccccccccCccEEEEecCCcHHHHHH
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |||+++|++++|+++.++.+++..+|+.++++++|+++....         .+.............++.++......   
T Consensus       126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  202 (628)
T TIGR02316       126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM---  202 (628)
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence            999999999999999999999999999999999999875321         11111111112233455554321000   


Q ss_pred             HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHh-hhcccccccccCCCCCCcE
Q 006115          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~d~  268 (660)
                       ........+|.++.........+.....++++++|+|||||||.||||+++|.+++... ......+     ++.++|+
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  276 (628)
T TIGR02316       203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV  276 (628)
T ss_pred             -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence             00001123556555432212222233567999999999999999999999999976443 3333344     6788999


Q ss_pred             EEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006115          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      +++..|+.|..|+.. ++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+....          
T Consensus       277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------  346 (628)
T TIGR02316       277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA----------  346 (628)
T ss_pred             EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc----------
Confidence            999999999988754 6778999999999863     688999999999999999999999887542100          


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCC
Q 006115          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~  422 (660)
                                               .....+        .++||.+++||+++++++.+++++.++.++++.||+||++.
T Consensus       347 -------------------------~~~~~~--------l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~  393 (628)
T TIGR02316       347 -------------------------WLRKHD--------LSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW  393 (628)
T ss_pred             -------------------------ccccCC--------ccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence                                     001111        24999999999999999999999989999999999999986


Q ss_pred             ceecccCCC---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcc----cC
Q 006115          423 PTTVCFPDE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID  492 (660)
Q Consensus       423 ~~~~~~~~~---~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~---~~~~gy~~~~~~~~~~f----~~  492 (660)
                      .++....+.   ....+++|.|+++++++|+| ++++ .+++.|+.|||+++||   +.+.||+++++.+...+    .+
T Consensus       394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g-~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~  471 (628)
T TIGR02316       394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATG-RPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKR  471 (628)
T ss_pred             eeecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCC-CCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCC
Confidence            544333221   23347889999999999999 5332 3455678999999998   46789999988776654    46


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006115          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      +||+|||+|++|+||.++++||.||+||+ +|++|+|.+||++|.+||.|.||+|++.+++   ..++++|+++++... 
T Consensus       472 ~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~-  549 (628)
T TIGR02316       472 PLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA-  549 (628)
T ss_pred             CEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc-
Confidence            79999999999999999999999999997 7999999999999999999999999998765   378899888754200 


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                                     .+......+.++|+++++ ..|+.|++|+.|++++      .+|+|++||++|++|++.+.
T Consensus       550 ---------------~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~------~lP~t~sGKi~r~~L~~~~~  603 (628)
T TIGR02316       550 ---------------GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVA------ALPKTRSGKLLRRSIQALAE  603 (628)
T ss_pred             ---------------ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcC------CCCCCCchHHHHHHHHHHHc
Confidence                           000011223455666665 7899999999999874      45999999999999998764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-65  Score=566.67  Aligned_cols=495  Identities=21%  Similarity=0.185  Sum_probs=388.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      +++.+.|.+.++++|+++|+...   +.     +++||+||.++++++|+.|.+   .+||+|+++++|++++++++|||
T Consensus        19 ~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~   87 (539)
T PRK06334         19 KTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFAT   87 (539)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHH
Confidence            78999999999999999998653   22     479999999999999999987   38999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++|+.+++++++++......+.............++..++....            ..+.
T Consensus        88 ~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~  155 (539)
T PRK06334         88 LLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSFW  155 (539)
T ss_pred             HhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccHH
Confidence            9999999999999999999999999999999998876554422111100001123333221100            0000


Q ss_pred             HHHh------cCcc---CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEe
Q 006115          202 EFLH------LGKV---NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       202 ~~~~------~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (660)
                      +...      ....   .........++++++++|||||||.||+|.+||+++..........+     +++.+|+++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~  230 (539)
T PRK06334        156 EKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMSF  230 (539)
T ss_pred             HhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEEe
Confidence            0000      0000   00011235679999999999999999999999999998877665555     67889999999


Q ss_pred             cChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006115          273 LPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (660)
Q Consensus       273 ~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (660)
                      +|++|.+|+.. .+.++..|+++++...  ++..+++.|+++++|+++++|+++..|++......               
T Consensus       231 ~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------  295 (539)
T PRK06334        231 LPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE---------------  295 (539)
T ss_pred             cchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc---------------
Confidence            99999999875 5677999999988753  89999999999999999999999998876422110               


Q ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceeccc
Q 006115          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~  428 (660)
                                                    ...++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++...
T Consensus       296 ------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~  345 (539)
T PRK06334        296 ------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINT  345 (539)
T ss_pred             ------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEecc
Confidence                                          0114899999999999999999999888 689999999999988766554


Q ss_pred             CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCCccccCceEEECCC
Q 006115          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILPN  506 (660)
Q Consensus       429 ~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f--~~g~~~TGDl~~~~~~  506 (660)
                      .......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.+....  .+|||+|||+|++|++
T Consensus       346 ~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~  423 (539)
T PRK06334        346 VNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH  423 (539)
T ss_pred             CCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCC
Confidence            43333346799999999999998 4433 456778899999999999999999988654322  3679999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcce------EEEEecCCCC-eEEEEEEcChhhHHHHHHHCCCCCc
Q 006115          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------IWVYGDSLKS-MLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~------~~v~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      |.+++.||.+|+||+ +|++|+|.+||++|.+||+|.+      ++|++.++.. .++++++...               
T Consensus       424 G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------  487 (539)
T PRK06334        424 GELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPT---------------  487 (539)
T ss_pred             CeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccC---------------
Confidence            999999999999996 8999999999999999999998      7888887654 4555554321               


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           +.        +++++++++..++.|++|+.+.+++      .+|+|++||++|++|++....
T Consensus       488 -----~~--------~~~~~~l~~~~~~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        488 -----SI--------SEVNDILKNSKTSSILKISYHHQVE------SIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             -----Ch--------HHHHHHHHhcCCcccccchheeeec------ccccccCCcccHHHHHHHHHH
Confidence                 11        2334444434578999999988874      469999999999999988654

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.3e-67  Score=504.32  Aligned_cols=501  Identities=20%  Similarity=0.194  Sum_probs=427.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|..+|.++||++|++..     +    +.+||.||.+++.++|++|++.|+++||+|++.++|..++++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            488999999999999999999864     2    5699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh----hhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++++|+.+|.--|.....+|.++.+...++.+|.+..+.    ..+........+.++.+++.++....           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            999999999999999999999999999999999987533    22333333455777888887544211           


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      ...+..+... .....+..+.++++++++..+.||||.||.|..||.....++..-.+.+     ++++.+++++.+|..
T Consensus       167 ~~~~~~~~~~-a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         167 SVLEAALCHP-AGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             chhhhhhhCc-cccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence            1122222222 2334456677889999999999999999999999999999998888888     899999999999999


Q ss_pred             hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+.+..  .+..+++|+++|+.+. ++.....+|+++++|+...+|.....++.+...                     
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~---------------------  299 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW---------------------  299 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc---------------------
Confidence            9998875  6788999999999886 999999999999999999999999888765432                     


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                      ...++        +|||.+-.||+.+++++.+++...+||.+.+.+||.|.-...+...+....
T Consensus       300 ----------------~~~~L--------sSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~  355 (542)
T COG1021         300 ----------------ERADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEI  355 (542)
T ss_pred             ----------------ccCCc--------hheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHh
Confidence                            22223        499999999999999999999999999999999999988777665555555


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ...+-|+|+ |.-+++|+| .+++  ++++||.|+|..+||..++|||+.++.+.+.| .+|||+|||++++|+||++.+
T Consensus       356 i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V  432 (542)
T COG1021         356 IIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVV  432 (542)
T ss_pred             eeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEE
Confidence            557788887 688999999 6655  66677999999999999999999999999999 899999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|+ |+|++|..+|||+.|..||.|.+|++++-+|+   +..+|||+.++...                 +..+
T Consensus       433 ~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~-----------------~~~q  494 (542)
T COG1021         433 EGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-----------------RAAQ  494 (542)
T ss_pred             Eeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC-----------------CHHH
Confidence            999999999 89999999999999999999999999998876   48999999987531                 2233


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                              |+.++.+..+..|++|++|.++      +++|.|+-|||+|++|++.+...
T Consensus       495 --------lr~~L~~~GlAa~K~PDrie~v------~~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         495 --------LRRFLRERGLAAFKLPDRIEFV------DSLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             --------HHHHHHHcchhhhcCCcceeec------ccCCCcccccccHHHHHHHhhhh
Confidence                    3444447899999999999997      66799999999999999887643

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.2e-66  Score=572.54  Aligned_cols=496  Identities=20%  Similarity=0.192  Sum_probs=402.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.++|.++|+++||++|++..   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++++.++++++|+++.....+... ......+..++.......       .....+.+++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998766554332 122222333322221110       0112344666


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  281 (660)
                      ++......   ...+...+++++++|||||||.||+|.++|.+++..+......+     ++..+++++...|++|.+|+
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            66654321   11223467889999999999999999999999998877766555     67889999999999999999


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Q 006115          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.++..|+++++... ++..+++.++++++|+++++|+++..+++.......                         
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------  318 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-------------------------  318 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC-------------------------
Confidence            877788999999988765 999999999999999999999999988653221000                         


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCC
Q 006115          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                                ..        ..++||.+++||+++++++.+.+.+.++.++++.||+||++..+..........++++|.
T Consensus       319 ----------~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  380 (549)
T PRK07788        319 ----------KY--------DTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR  380 (549)
T ss_pred             ----------CC--------CCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence                      00        014899999999999999999999999999999999999987655444332334478999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeE
Q 006115          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       441 ~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      |+++++++++| +++.  +++.|+.|||+|+|+.++.||++++..   ...+|||+|||+|++|++|.+++.||.||+|+
T Consensus       381 ~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~  454 (549)
T PRK07788        381 PPKGVTVKILD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV  454 (549)
T ss_pred             CCCCcEEEEEC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence            99999999998 6554  444578999999999999999998765   34589999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006115          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|++|+|.+||++|.+||+|.+|+|++.+++   ..++|+|+++++.        ..        +        .++|
T Consensus       455 ~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~~--------~--------~~~l  509 (549)
T PRK07788        455 S-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA--------AL--------D--------EDAI  509 (549)
T ss_pred             E-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC--------CC--------C--------HHHH
Confidence            6 8999999999999999999999999997765   3689999887642        00        1        1234


Q ss_pred             HHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      +++++ .+||.|++|+.+++++      ++|+|++||++|++|+++
T Consensus       510 ~~~~~-~~l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        510 KDYVR-DNLARYKVPRDVVFLD------ELPRNPTGKVLKRELREM  548 (549)
T ss_pred             HHHHH-HhhhcCCCCcEEEEeC------CCCCCCCcCEeHHHhhcc
Confidence            44443 6789999999999874      469999999999999753

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.6e-65  Score=573.65  Aligned_cols=519  Identities=22%  Similarity=0.234  Sum_probs=405.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..|+.++|.++|+++||++|+++... ++.....+++||.||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA  102 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG  102 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            36899999999999999999987411 11122347899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh-----hhhhccccccccCccEEEEecCCcHHH--HHH----
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQ--KEM----  189 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~----  189 (660)
                      |+++| +++|+++.++++++.++++.++++++|++....     ..+... ....+.++.++.++......  ...    
T Consensus       103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEV-LAALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHH-HhcCCcceeEEEecCcccccccccccccc
Confidence            99999 568999999999999999999999999986432     122111 11234455555554321000  000    


Q ss_pred             -HhhCCceeeeHHHHHhcCccCC-ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCc
Q 006115          190 -AVQTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (660)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (660)
                       .........++.+.+....... .......++++++++|||||||.||+|.+||++++..+......+     ++.+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d  255 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD  255 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence             0001122345665554432221 122334679999999999999999999999999998877665555     678899


Q ss_pred             EEEEecChhhHHHHHH-HHHHhhcCcEEEEecC----C---hHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 006115          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (660)
Q Consensus       268 ~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (660)
                      ++++.+|++|.+++.. ++.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|++....       
T Consensus       256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------  328 (632)
T PRK07529        256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-------  328 (632)
T ss_pred             EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------
Confidence            9999999999998875 6777999999998763    2   36788999999999999999999988642100       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCC
Q 006115          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE  419 (660)
                                                     ..+        .++||.+++||+++++++.+.+++.+|+++++.||+||
T Consensus       329 -------------------------------~~~--------~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE  369 (632)
T PRK07529        329 -------------------------------GHD--------ISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE  369 (632)
T ss_pred             -------------------------------CCC--------ccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccc
Confidence                                           001        14899999999999999999999999999999999999


Q ss_pred             CCCceecccCCCccccCccCCCccCeeEEeeecCCCCC--CCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccc
Q 006115          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (660)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~--~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~  496 (660)
                      ++.++..+........+++|.|+|+++++++..++++.  .+++.|+.|||+|+|++++.||++++. +...| .+|||+
T Consensus       370 ~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~  448 (632)
T PRK07529        370 ATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLN  448 (632)
T ss_pred             cCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceE
Confidence            99877666544444558999999999999976444332  566778999999999999999998754 45555 789999


Q ss_pred             cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006115          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (660)
                      |||+|++|++|++++.||.+|+|++ +|++|+|.+||+.|.+||.|.+|+|++.++.   +.++|+|++.++..      
T Consensus       449 TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~------  521 (632)
T PRK07529        449 TGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS------  521 (632)
T ss_pred             cCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC------
Confidence            9999999999999999999999995 8999999999999999999999999998765   37899999876430      


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCC-CceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLR-GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                        .        +.+        +|.++++ ..++ .+++|+.|++++      .+|+|++||++|++|++.+..
T Consensus       522 --~--------~~~--------~l~~~~~-~~l~~~~~~P~~i~~v~------~lP~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        522 --A--------TEA--------ELLAFAR-DHIAERAAVPKHVRILD------ALPKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             --C--------CHH--------HHHHHHH-HhcchhccCCcEEEEec------CCCCCCCCcccHHHHHHHHHH
Confidence              0        112        2333333 4554 478999999984      469999999999999998754

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-65  Score=567.85  Aligned_cols=509  Identities=18%  Similarity=0.202  Sum_probs=414.1

Q ss_pred             CCCcHHHHHHHHHH-hCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        40 ~~~ti~~~l~~~a~-~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ..+.+.+++++++. .+||++|+.+.   +..  ..+++||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            45677789998887 58999999876   432  3468999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|+++.++.+++.++++.+++++++++.........   ...+..+.++.++....        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence            9999999999999999999999999999999999999876544321   12334445555543211        111233


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      ++.++..... .........++++++++|||||||.||+|+++|++++..+......+     ++.++|++++..|++|.
T Consensus       185 ~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  258 (570)
T PRK04319        185 DFNALMEQAS-DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV  258 (570)
T ss_pred             CHHHHHhhcC-CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence            5666554432 22223345678999999999999999999999999998877766555     78889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .|+.. ++.++..|+++++...  ++..+++.++++++|+++++|++++.|.+.....                      
T Consensus       259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  316 (570)
T PRK04319        259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL----------------------  316 (570)
T ss_pred             hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence            88764 6778999999988764  8999999999999999999999999886421100                      


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcccc
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (660)
                                   ....+        .++||.++++|+++++++.+++++.++.++++.||+||++..+..........+
T Consensus       317 -------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~  375 (570)
T PRK04319        317 -------------VKKYD--------LSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP  375 (570)
T ss_pred             -------------cccCC--------cccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence                         00001        148999999999999999999999899999999999999887654433333345


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006115          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       436 ~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      +++|.|+++++++|++ +++...  +.|+.|||+++|  +.++.||+++++.+.+.|.+|||+|||+++++++|.++++|
T Consensus       376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G  452 (570)
T PRK04319        376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG  452 (570)
T ss_pred             CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence            7899999999999999 665533  567899999997  88999999999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006115          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|+. +|++|+|.+||+.|.+||.|.+++|++.+++   ..+++++++.++..                 ..+   
T Consensus       453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~-----------------~~~---  511 (570)
T PRK04319        453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYE-----------------PSE---  511 (570)
T ss_pred             cCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCC-----------------CCH---
Confidence            99999996 8999999999999999999999999997765   47888888776420                 112   


Q ss_pred             HHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                       .+.++|.++++ +.|+.|++|+.++++      +.+|+|++||++|++|+++..
T Consensus       512 -~~~~~l~~~~~-~~l~~~~~P~~i~~v------~~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        512 -ELKEEIRGFVK-KGLGAHAAPREIEFK------DKLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             -HHHHHHHHHHH-HhcccccCCcEEEEe------CCCCCCCchhhhHHHHHHHHh
Confidence             23344555554 689999999999987      456999999999999998753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.4e-65  Score=571.72  Aligned_cols=519  Identities=18%  Similarity=0.222  Sum_probs=407.1

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +..+...++|+++++++||++|+++.   +..++..+++||+||.+++.++|++|.+.|+++||+|+++++|++++++++
T Consensus        64 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  140 (637)
T PRK00174         64 GELNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAM  140 (637)
T ss_pred             CEeEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            33455678888889999999999975   433345678999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh---------hhhccccccccCccEEEEecCCcHHHHHH
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |||+++|++++|++|.++.+++.++++.++++++|+++....         .+... ....+..+.++..+......   
T Consensus       141 lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---  216 (637)
T PRK00174        141 LACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEA-LANCPSVEKVIVVRRTGGDV---  216 (637)
T ss_pred             HHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHH-HHhCCCccEEEEEcCCCCCc---
Confidence            999999999999999999999999999999999999876431         11111 11123444555543221000   


Q ss_pred             HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhc-ccccccccCCCCCCcE
Q 006115          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~-~~~~~~~~~~~~~~d~  268 (660)
                       .........++++.... ..........++++++|+|||||||.||+|+++|++++.++... ...+     ++.++|+
T Consensus       217 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~  289 (637)
T PRK00174        217 -DWVEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDV  289 (637)
T ss_pred             -CcCCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcE
Confidence             00001123455555432 22222334567899999999999999999999999987654432 2223     6778999


Q ss_pred             EEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006115          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      +++..|++|..+... ++.++..|+++++++.     ++..+++.++++++|++.++|++++.|++.....         
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  360 (637)
T PRK00174        290 YWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH---------  360 (637)
T ss_pred             EEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc---------
Confidence            999999999988764 6778999999998753     6899999999999999999999999886531110         


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 006115          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE  419 (660)
                                                ....        ..++||.++++|+++++++.+++.+.++   +++++.||+||
T Consensus       361 --------------------------~~~~--------~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE  406 (637)
T PRK00174        361 --------------------------PKKY--------DLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTE  406 (637)
T ss_pred             --------------------------cccC--------CccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccc
Confidence                                      0001        1148999999999999999999988875   78999999999


Q ss_pred             CCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCC
Q 006115          420 TCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (660)
Q Consensus       420 ~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f---~~g  493 (660)
                      +++.++....+. ....+++|.|++|++++|+| +++.  +++.|+.|||+|+|  |+++.|||++++.+.+.+   .+|
T Consensus       407 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g  483 (637)
T PRK00174        407 TGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGN--PLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKG  483 (637)
T ss_pred             cCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCC--CCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCC
Confidence            998765443322 23347899999999999999 6654  34567899999999  689999999998887765   479


Q ss_pred             ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHH
Q 006115          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (660)
Q Consensus       494 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~  570 (660)
                      ||+|||+|++|++|++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..   
T Consensus       484 ~~~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~---  559 (637)
T PRK00174        484 MYFTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE---  559 (637)
T ss_pred             EEECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC---
Confidence            9999999999999999999999999997 7999999999999999999999999997654   47899999876430   


Q ss_pred             HHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                                    ..    ..+.++|.++++ ..|+.|++|+.++++      +.+|+|++||++|++|++.+..
T Consensus       560 --------------~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        560 --------------PS----DELRKELRNWVR-KEIGPIAKPDVIQFA------PGLPKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             --------------CC----HHHHHHHHHHHH-hhcCCccCCCEEEEc------CCCCCCCCcchHHHHHHHHHcC
Confidence                          01    123344555554 689999999999997      4569999999999999988653

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-64  Score=566.90  Aligned_cols=525  Identities=17%  Similarity=0.161  Sum_probs=404.0

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +..|...++|+++++.+||++|+++.   +..++..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        50 ~~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  126 (629)
T PRK10524         50 GRTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAM  126 (629)
T ss_pred             cEeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            33566788898988889999999875   333344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh---------hhhhccccccccCccEEEEecCCcHHHHHH
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |||+++|++++|++|.++.+.+..+|+.++++++|+++...         ..+.+...........++.++......   
T Consensus       127 lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  203 (629)
T PRK10524        127 LACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM---  203 (629)
T ss_pred             HHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence            99999999999999999999999999999999999976432         111111110111233444443211000   


Q ss_pred             HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCcE
Q 006115          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~  268 (660)
                       .........+.++.........+.....++++++++|||||||.||+|+++|.+++..... +...+     ++.++|+
T Consensus       204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~  277 (629)
T PRK10524        204 -ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGET  277 (629)
T ss_pred             -CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCE
Confidence             0001112345555443222222223346789999999999999999999999987654433 22333     6788999


Q ss_pred             EEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006115          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      +++..|+.|..+... ++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+....          
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------  347 (629)
T PRK10524        278 FFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA----------  347 (629)
T ss_pred             EEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc----------
Confidence            999999999888654 6778999999998763     688999999999999999999999887542100          


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCC
Q 006115          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~  422 (660)
                                               .....++        ++||.+++||+++++++.+++.+.+++++++.||+||++.
T Consensus       348 -------------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~  394 (629)
T PRK10524        348 -------------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGW  394 (629)
T ss_pred             -------------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccc
Confidence                                     0011112        3899999999999999999999999999999999999985


Q ss_pred             ceecccCC---CccccCccCCCccCeeEEeeecC-CCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcc----c
Q 006115          423 PTTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----I  491 (660)
Q Consensus       423 ~~~~~~~~---~~~~~~~~G~~~~~~~v~iv~~~-~~~~~~~~~g~~GEi~v~g~---~~~~gy~~~~~~~~~~f----~  491 (660)
                      .+.....+   .....+++|.|+++++++|+| + ++.  +++.|+.|||+++||   +++.||+++++.+.+.+    .
T Consensus       395 ~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~--~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~  471 (629)
T PRK10524        395 PILAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGE--PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFG  471 (629)
T ss_pred             hhhcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCC--CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCC
Confidence            43322221   123347899999999999999 5 443  456778999999998   57789999988776554    3


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|++|++|.++++||.||+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.++++++++.+...
T Consensus       472 ~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~  550 (629)
T PRK10524        472 RQVYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL  550 (629)
T ss_pred             CcEEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc
Confidence            689999999999999999999999999997 7999999999999999999999999998766   478899988764210


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                                      ++.+..+.+.++|+++++ ..|+.|++|+.|+++      +.+|+|++||++|++|++.+.
T Consensus       551 ----------------~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v------~~lP~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        551 ----------------ADREARLALEKEIMALVD-SQLGAVARPARVWFV------SALPKTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             ----------------ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEc------CCCCCCCCcchHHHHHHHHHc
Confidence                            111123344556666665 789999999999987      446999999999999998764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=8.5e-64  Score=554.30  Aligned_cols=504  Identities=23%  Similarity=0.261  Sum_probs=407.5

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.+.|..+++.+||++|+++.   +...+.++++||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            57999999999999999999875   433445679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcee
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +++|++++|++|.++.+++.++++.++++++++++....    .....+......+..++.++...             .
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  167 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A  167 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence            999999999999999999999999999999999875411    11111112233444555544321             1


Q ss_pred             eeHHHHHhcCc-----c--CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEE
Q 006115          198 YSWDEFLHLGK-----V--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (660)
Q Consensus       198 ~~~~~~~~~~~-----~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (660)
                      .++.++.....     .  .........++++++++|||||||.||+|+++|.+++..+......+     ++..+++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  242 (547)
T PRK13295        168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVIL  242 (547)
T ss_pred             cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeEE
Confidence            13333332110     0  01112234678999999999999999999999999998888766655     788899999


Q ss_pred             EecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006115          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +..|++|..++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+........              
T Consensus       243 ~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  308 (547)
T PRK13295        243 MASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG--------------  308 (547)
T ss_pred             EecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC--------------
Confidence            9999999998765 6777999999998876 89999999999999999999999988865321110              


Q ss_pred             HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceeccc
Q 006115          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  428 (660)
                                                     ...++||.+++||+++++++.+.+.+.+++++++.||+||++.+++.+.
T Consensus       309 -------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (547)
T PRK13295        309 -------------------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL  357 (547)
T ss_pred             -------------------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccC
Confidence                                           0114899999999999999999999989999999999999988766554


Q ss_pred             CCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC
Q 006115          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (660)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G  507 (660)
                      ... .....++|.|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++++.+... .+|||+|||+|+++++|
T Consensus       358 ~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g  433 (547)
T PRK13295        358 DDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADG  433 (547)
T ss_pred             CCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCc
Confidence            322 22336789999999999998 6544  4566789999999999999999999888766 68999999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      ++++.||.+|+|++ +|.+|+|.+||++|.++|+|.+++|++.++.   ..++++|++.++..        .        
T Consensus       434 ~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------  496 (547)
T PRK13295        434 YIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS--------L--------  496 (547)
T ss_pred             eEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC--------C--------
Confidence            99999999999996 8999999999999999999999999997654   37888888775320        0        


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +        .+.+.+++++..++.|++|..++++      +.+|+|++||++|++|++++.+
T Consensus       497 ~--------~~~l~~~~~~~~l~~~~~P~~i~~v------~~lP~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        497 D--------FEEMVEFLKAQKVAKQYIPERLVVR------DALPRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             C--------HHHHHHHHHhccCccccCCcEEEEe------ccCCCCCCccccHHHHHHHHhc
Confidence            0        1233344433579999999999997      4469999999999999987754

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-63  Score=563.82  Aligned_cols=518  Identities=20%  Similarity=0.174  Sum_probs=397.3

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH
Q 006115           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~  115 (660)
                      +.++...++.+.+..+  .+|+++|+++.   + ..+..+++||+||.+++.++|++|++.|+++||+|+++++|+++++
T Consensus        80 wf~~~~~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v  153 (655)
T PRK03584         80 WFPGARLNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETV  153 (655)
T ss_pred             eCCCCEeeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            5555555666655543  58999999986   3 3445689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh---------hhhccccccccCccEEEEecCCcHHH
Q 006115          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (660)
Q Consensus       116 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~  186 (660)
                      +++|||+++|++++|++|.++.+++.++|+.++++++|+++....         .+. .....+..+..++.++......
T Consensus       154 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~  232 (655)
T PRK03584        154 VAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVA-ELRAALPSLEHVVVVPYLGPAA  232 (655)
T ss_pred             HHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHH-HHHhcCCCccEEEEEecCCCcc
Confidence            999999999999999999999999999999999999999875321         111 1111223344455444221000


Q ss_pred             HHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHH-hhhcccccccccCCCCC
Q 006115          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (660)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (660)
                         ..........|.++................+++++|+|||||||.||||++||.+++.. +......+     ++.+
T Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  304 (655)
T PRK03584        233 ---AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGP  304 (655)
T ss_pred             ---cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCC
Confidence               00011123456666552222222334456799999999999999999999999987543 44444444     6888


Q ss_pred             CcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006115          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       266 ~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                      +|++++..++.|..+. ..+.++..|+++++++.     ++..+++.++++++|++.++|+++..+.+...         
T Consensus       305 ~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------  374 (655)
T PRK03584        305 GDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------  374 (655)
T ss_pred             CCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------
Confidence            9999999999887543 35678999999999753     78999999999999999999999988754200         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCceeeecCCC
Q 006115          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLT  418 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~t  418 (660)
                                               .+ ....++        ++||.++++|+++++++.+++.+.+  ++.+.+.||+|
T Consensus       375 -------------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~T  420 (655)
T PRK03584        375 -------------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGT  420 (655)
T ss_pred             -------------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChH
Confidence                                     00 001112        3899999999999999999999887  47899999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--hcc---c
Q 006115          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---I  491 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~--~~~~gy~~~~~~~~--~~f---~  491 (660)
                      |+++.+...........+++|.|++|++++|+| +++...   .|+.|||+|+||  +++.||+++++.++  ..+   .
T Consensus       421 E~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~  496 (655)
T PRK03584        421 DICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTF  496 (655)
T ss_pred             hhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccC
Confidence            986544333222233457899999999999999 665533   568999999996  78999999987543  222   3


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|++|+||.++++||.||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++   ..++++|+++++.. 
T Consensus       497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~-  574 (655)
T PRK03584        497 PGVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVT-  574 (655)
T ss_pred             CCEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCC-
Confidence            689999999999999999999999999996 8999999999999999999999999998764   47999999886420 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                                      .++    .+.+.|+++++ ..|+.|++|+.|+++      +.+|+|++||++|++|++.+.
T Consensus       575 ----------------~~~----~~~~~l~~~~~-~~L~~~~~P~~i~~v------~~lP~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        575 ----------------LDD----ALRARIRTTIR-TNLSPRHVPDKIIAV------PDIPRTLSGKKVELPVKKLLH  624 (655)
T ss_pred             ----------------CcH----HHHHHHHHHHH-hhCCCCcCCCEEEEC------CCCCCCCCccchHHHHHHHHc
Confidence                            112    23345555554 789999999999997      446999999999999998874

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-63  Score=552.25  Aligned_cols=516  Identities=19%  Similarity=0.162  Sum_probs=397.1

Q ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh
Q 006115           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        34 ~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~  113 (660)
                      +..++....++.+.|.++|+++|+++|+++.   ++.    +.+||.||.++++++|+.|.+.|+++||+|+++++|+++
T Consensus         6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e   78 (540)
T PRK05857          6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE   78 (540)
T ss_pred             ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence            3456666788999999999999999999864   432    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006115          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++++|||+++|++++|+++.++.+++.++++.++++++|+++...... ..+........ ++..+.....        
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------  148 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------  148 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------
Confidence            9999999999999999999999999999999999999999988653211 11111111111 2222211000        


Q ss_pred             CceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEec
Q 006115          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (660)
                      .    .+......  ..........++++++++|||||||.||+|.++|+++.+......... ........+++.++.+
T Consensus       149 ~----~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  221 (540)
T PRK05857        149 R----ESEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPL  221 (540)
T ss_pred             c----cccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecC
Confidence            0    00000000  001112334678999999999999999999999999987654322110 0001445678999999


Q ss_pred             ChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       274 p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |++|..++...+.+++.|+++++.+.++..+++.++++++|+++++|+++..|.+......                   
T Consensus       222 p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-------------------  282 (540)
T PRK05857        222 PATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN-------------------  282 (540)
T ss_pred             CccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------
Confidence            9999999887788899999987766689999999999999999999999998865321100                   


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--  431 (660)
                                        .        ..+++|.+++||++++....+++ +.+++++++.||+||++..........  
T Consensus       283 ------------------~--------~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~  335 (540)
T PRK05857        283 ------------------A--------TVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGS  335 (540)
T ss_pred             ------------------C--------cCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccc
Confidence                              0        11489999999999998887644 467999999999999986544333221  


Q ss_pred             --ccccCccCCCccCeeEEeeecCCCCCCC----CCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC
Q 006115          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSP----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (660)
Q Consensus       432 --~~~~~~~G~~~~~~~v~iv~~~~~~~~~----~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~  505 (660)
                        ....+++|.|++|++++|++ +++....    .+.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+
T Consensus       336 ~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~  414 (540)
T PRK05857        336 IVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRE  414 (540)
T ss_pred             ccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcC
Confidence              11347899999999999998 5543221    2346789999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      +|++++.||.+|+|++ +|.+|+|.+||.+|..||+|.+|+|++.++.   ..++++++..+..                
T Consensus       415 ~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~----------------  477 (540)
T PRK05857        415 DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL----------------  477 (540)
T ss_pred             CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC----------------
Confidence            9999999999999996 8999999999999999999999999998754   3566666655421                


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                         +....+.+.+.+.+.++ ..++.|++|+.+.+++      .+|+|++||++|++|++.+.+.
T Consensus       478 ---~~~~~~~l~~~~~~~~~-~~l~~~~~P~~v~~~~------~iP~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        478 ---DESAARALKHTIAARFR-RESEPMARPSTIVIVT------DIPRTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             ---ChhhHHHHHHHHHHHHH-hhhccccCCeEEEEhh------cCCCCCCcceeHHHHHHhhhhc
Confidence               11112334445555554 6799999999999984      4599999999999999888754

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.1e-63  Score=561.46  Aligned_cols=518  Identities=19%  Similarity=0.154  Sum_probs=390.9

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH
Q 006115           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~  115 (660)
                      +.++...++.+.+..   +.++++|+++.   + +++..+++||+||.+++.++|++|++.|+++||+|+++++|+++++
T Consensus        81 wf~~~~~n~~~~~~~---~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~  153 (652)
T TIGR01217        81 WFPGARLNYAENLLR---AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAV  153 (652)
T ss_pred             ECCCCeeeHHHHHhc---cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            444444556655544   35789999886   3 3445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh---------hhhhccccccccCccEEEEecCCcHHH
Q 006115          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (660)
Q Consensus       116 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~  186 (660)
                      +++|||+++|++++|+++.++.+++.++|++++++++|+++...         ..+.. ....++.++.++.+.......
T Consensus       154 ~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~  232 (652)
T TIGR01217       154 VAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAE-VRKELPTLRAVVHIPYLGPRE  232 (652)
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHH-HHhcCCCccEEEEEeCCCCcc
Confidence            99999999999999999999999999999999999999987542         11111 112233445555543211000


Q ss_pred             HHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH-HhhhcccccccccCCCCC
Q 006115          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTV  265 (660)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~-~~~~~~~~~~~~~~~~~~  265 (660)
                      ..  .........|+++...............++++++|+|||||||.||||+++|.+++. .+......+     ++.+
T Consensus       233 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  305 (652)
T TIGR01217       233 TE--APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGP  305 (652)
T ss_pred             cc--cccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCC
Confidence            00  000012235666654421112222345678999999999999999999999998654 333333334     7888


Q ss_pred             CcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006115          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       266 ~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                      +|+++++.|+.|..+ ..++.++..|+++++++.     ++..+++.++++++|++..+|.++..+....          
T Consensus       306 ~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----------  374 (652)
T TIGR01217       306 GDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAG----------  374 (652)
T ss_pred             CcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcC----------
Confidence            999999999999754 234578999999999863     6789999999999999987777766553210          


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC--CceeeecCCC
Q 006115          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLT  418 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~--~~v~~~YG~t  418 (660)
                                              ..+ ....++        ++||.+++||+++++++.+++.+.++  ..+.+.||+|
T Consensus       375 ------------------------~~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~T  421 (652)
T TIGR01217       375 ------------------------VHP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGT  421 (652)
T ss_pred             ------------------------CCc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHH
Confidence                                    000 011122        49999999999999999999988775  4677899999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--hc-c--c
Q 006115          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--I  491 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~--~~~~gy~~~~~~~~--~~-f--~  491 (660)
                      |++..............+++|.|.+|++++++| +++...   .|+.|||+++||  +++.|||++++.++  .. |  .
T Consensus       422 E~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~  497 (652)
T TIGR01217       422 DICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY  497 (652)
T ss_pred             HHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCC
Confidence            975433322222223347889999999999999 666543   368999999996  58899999998654  22 2  2


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||.|.||+|++.+++   +.++|+|+++++.. 
T Consensus       498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~-  575 (652)
T TIGR01217       498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGAT-  575 (652)
T ss_pred             CCEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCC-
Confidence            689999999999999999999999999995 8999999999999999999999999998765   38999999886430 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                                      ..+    .+.++|+++++ ..|+.|++|+.|+++      +.+|+|++||++|+.|++.+.
T Consensus       576 ----------------~~~----~~~~~l~~~~~-~~l~~~~~P~~i~~v------~~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       576 ----------------LDD----ALLDRIKRTIR-AGLSPRHVPDEIIEV------PGIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             ----------------CCH----HHHHHHHHHHH-hhCCCCcCCCEEEEC------CCCCCCCCccChHHHHHHHHc
Confidence                            112    23445566664 789999999999987      446999999999999999874

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3e-63  Score=551.04  Aligned_cols=505  Identities=20%  Similarity=0.192  Sum_probs=390.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCC----CCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~  116 (660)
                      ..++.+.|...++++||++|+++.   ++.+    ..++++||.||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            367889999999999999999875   3311    224589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc--hhhhhhccccccccCccEEEEecCCcHHHHHHHhhCC
Q 006115          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      ++|||+++|++++|++|.++.+++.++++.++++++|+++.  ....+....   ......++.++...          .
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~  148 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L  148 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence            99999999999999999999999999999999999999752  111111100   01122222222110          0


Q ss_pred             ceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecC
Q 006115          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (660)
                      .....+.++...............++++++++|||||||.||+|+++|+++...+......+     ++.++++.++.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p  223 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP  223 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence            01113444432211122222344678999999999999999999999999999888776666     7888999999999


Q ss_pred             hhhHHHHHHHHHHhhcCcEEEEec--------CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006115          275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       275 ~~~~~g~~~~~~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++|.+++       ..|+++++..        .++..+++.++++++|+++++|+++..|.+......            
T Consensus       224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  284 (552)
T PRK09274        224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------  284 (552)
T ss_pred             HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------------
Confidence            9876553       4577776653        278999999999999999999999999876422110            


Q ss_pred             HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCceeeecCCCCCCCce
Q 006115          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT  424 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~  424 (660)
                                                       ...++||.+++||+++++++.+.+++.+  |+++++.||+||+++++
T Consensus       285 ---------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        285 ---------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS  331 (552)
T ss_pred             ---------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence                                             0114899999999999999999999988  57999999999998765


Q ss_pred             ecccCC---------CccccCccCCCccCeeEEeeecCCC-------CCCCCCCCCCceEEEccCCcccccCCCchhhhh
Q 006115          425 TVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (660)
Q Consensus       425 ~~~~~~---------~~~~~~~~G~~~~~~~v~iv~~~~~-------~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~  488 (660)
                      +.....         ......++|+|+++++++|+| +.+       +..+++.|+.|||+|+|+.++.||+++++.+..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~  410 (552)
T PRK09274        332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL  410 (552)
T ss_pred             eecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhh
Confidence            543221         111224789999999999998 432       224566788999999999999999999999987


Q ss_pred             cc---cCC--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC--eEEEEEE
Q 006115          489 SI---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVV  561 (660)
Q Consensus       489 ~f---~~g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~v~  561 (660)
                      .|   .+|  ||+|||+|++|++|+++++||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++.  .++++|+
T Consensus       411 ~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~  489 (552)
T PRK09274        411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVE  489 (552)
T ss_pred             hhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEE
Confidence            76   356  9999999999999999999999999996 89999999999999999999999999976553  6888888


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccc--cccccchHH
Q 006115          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT--ATLKKKRNK  639 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t--~~GKv~R~~  639 (660)
                      +.++...                +..+    +.+.+++.+.  ..+.+..|+.+.++      +.||+|  ++||++|++
T Consensus       490 ~~~~~~~----------------~~~~----l~~~l~~~l~--~~~~~~~~~~~~~~------~~lP~t~~~~GKi~r~~  541 (552)
T PRK09274        490 LEPGVAC----------------SKSA----LYQELRALAA--AHPHTAGIERFLIH------PSFPVDIRHNAKIFREK  541 (552)
T ss_pred             ccCcccc----------------chHH----HhhhhHHHHH--hcCCCcceeEEecc------CCCCccccccccccHHH
Confidence            7764310                1122    3333444433  33556778888887      446999  799999999


Q ss_pred             HHHHHHHHH
Q 006115          640 LLIYYQVEI  648 (660)
Q Consensus       640 l~~~~~~~l  648 (660)
                      |++++.+.+
T Consensus       542 L~~~~~~~~  550 (552)
T PRK09274        542 LAVWAAKQL  550 (552)
T ss_pred             HHHHHHHhh
Confidence            999887654

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.9e-63  Score=551.07  Aligned_cols=502  Identities=23%  Similarity=0.272  Sum_probs=391.5

Q ss_pred             HHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHHHHHHh
Q 006115           45 WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNA  123 (660)
Q Consensus        45 ~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~  123 (660)
                      ..++.+  +.+|+++|++..   ++  +  .++||.||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus        44 ~~l~~~--~~~~~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~  114 (560)
T PLN02574         44 SFIFSH--HNHNGDTALIDS---ST--G--FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLS  114 (560)
T ss_pred             HHHhcC--cccCCCCEEEEC---CC--C--CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHH
Confidence            344444  678999999854   22  1  369999999999999999998 8999999999999999999999999999


Q ss_pred             CCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHH
Q 006115          124 LSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (660)
Q Consensus       124 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (660)
                      +|++++|++|.++.+++.++++.+++++++++......+...      ... ++.++.....     .........+.++
T Consensus       115 ~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-----~~~~~~~~~~~~~  182 (560)
T PLN02574        115 LGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPENYDF-----DSKRIEFPKFYEL  182 (560)
T ss_pred             hCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCccccc-----ccCccCcccHHHH
Confidence            999999999999999999999999999999998766554221      111 2222110000     0000112244554


Q ss_pred             HhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH
Q 006115          204 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (660)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~  283 (660)
                      ..... .........++++++++|||||||.||+|++||+++...+..+..............++++..+|++|.+|+..
T Consensus       183 ~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~  261 (560)
T PLN02574        183 IKEDF-DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL  261 (560)
T ss_pred             hhcCC-cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence            44321 12223344678999999999999999999999999988776553221110112345688999999999999876


Q ss_pred             -HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCC
Q 006115          284 -EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (660)
Q Consensus       284 -~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (660)
                       ++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++.....                            
T Consensus       262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------  313 (560)
T PLN02574        262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----------------------------  313 (560)
T ss_pred             HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----------------------------
Confidence             4556788999988876 9999999999999999999999999886532100                            


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC-CccccCccC
Q 006115          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAG  439 (660)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~G  439 (660)
                              ..        ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+++..... .....+++|
T Consensus       314 --------~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG  377 (560)
T PLN02574        314 --------CG--------EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVG  377 (560)
T ss_pred             --------cc--------CccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCcee
Confidence                    00        0114899999999999999999998887 78999999999998765432222 223457899


Q ss_pred             CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCe
Q 006115          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (660)
Q Consensus       440 ~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~  518 (660)
                      .++++++++|+| ++++ .+++.|+.|||||+|+.++.||+++++.+.+.| .+|||+|||+|++|++|.+++.||.+|+
T Consensus       378 ~~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~  455 (560)
T PLN02574        378 LLAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEI  455 (560)
T ss_pred             eeCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhh
Confidence            999999999999 4444 456678899999999999999999999999888 6899999999999999999999999999


Q ss_pred             eEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 006115          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (660)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (660)
                      |++ +|++|++.+||++|.+||+|.|++|++.++.   +.++++|+.+++.        ..        +.        +
T Consensus       456 i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------~~--------~  510 (560)
T PLN02574        456 IKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS--------TL--------SQ--------E  510 (560)
T ss_pred             eEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC--------CC--------CH--------H
Confidence            997 7999999999999999999999999997654   3688888876532        00        11        2


Q ss_pred             HHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       596 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .|.++++ +.|+.|+.|+.+.+++      ++|+|++||++|+.|++++.+
T Consensus       511 ~l~~~~~-~~l~~~~~p~~v~~v~------~iP~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        511 AVINYVA-KQVAPYKKVRKVVFVQ------SIPKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HHHHHHH-HhccCcccCcEEEEee------ccCCCCcchhhHHHHHHHHhh
Confidence            3334443 6799999999888874      469999999999999988754

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-62  Score=546.57  Aligned_cols=515  Identities=21%  Similarity=0.273  Sum_probs=398.9

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      ....|+.+.|+++++++|+++|++..    +     +++||.||.++++++|++|.+ .|+++||+|+++++|+++++++
T Consensus        21 ~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~   91 (562)
T PRK05677         21 DEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVA   91 (562)
T ss_pred             CccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence            34468999999999999999999863    3     479999999999999999997 5999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCc--HHHHHHHh----
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMAV----  191 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~----  191 (660)
                      +|||+++|++++|++|.++.+++.++++.++++++|++......+.+... . ...+.++..+..+  ........    
T Consensus        92 ~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
T PRK05677         92 VFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVV  169 (562)
T ss_pred             HHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccch
Confidence            99999999999999999999999999999999999998765543322111 1 1122222221100  00000000    


Q ss_pred             ---------hCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCC
Q 006115          192 ---------QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (660)
Q Consensus       192 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~  262 (660)
                               ........+.+.+..............++++++++|||||||.||+|+++|.++...+......+.   ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~  246 (562)
T PRK05677        170 KHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SN  246 (562)
T ss_pred             hhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cC
Confidence                     000112234444433322222223456799999999999999999999999999887665443331   12


Q ss_pred             CC-CCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006115          263 MT-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       263 ~~-~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                      +. ..+++++.+|++|.+++.. ++..+..|++.++.+.  ++..+++.++++++|+++++|+++..++....       
T Consensus       247 ~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------  319 (562)
T PRK05677        247 LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA-------  319 (562)
T ss_pred             CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc-------
Confidence            33 3478899999999999865 4556777887776653  88999999999999999999999988754210       


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCC
Q 006115          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~t  418 (660)
                                                    ....++        +++|.+++||+++++++.+.+.+.+++++++.||+|
T Consensus       320 ------------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~t  361 (562)
T PRK05677        320 ------------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMT  361 (562)
T ss_pred             ------------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCcc
Confidence                                          000011        389999999999999999999998999999999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcccc
Q 006115          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~T  497 (660)
                      |++.++....... ..++++|.|+++++++++| +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|
T Consensus       362 E~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T  437 (562)
T PRK05677        362 ETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGN--ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKT  437 (562)
T ss_pred             ccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCC--CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccc
Confidence            9987766554432 2347899999999999998 6554  45667899999999999999999999999998 5899999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006115          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+|++|++|.+++.||.+|+|++ +|.+|+|.+||+.|++||+|.+++|++.++.   ..+++++++.++.        
T Consensus       438 GDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~--------  508 (562)
T PRK05677        438 GDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE--------  508 (562)
T ss_pred             cceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC--------
Confidence            999999999999999999999997 7999999999999999999999999997754   3677888766432        


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                      +.        +.        +.+.+++ +..|+.|++|..+++++      .+|+|++||++|++|++++.+++
T Consensus       509 ~~--------~~--------~~l~~~~-~~~l~~~~~P~~i~~v~------~iP~t~sGKi~r~~L~~~~~~~~  559 (562)
T PRK05677        509 TL--------TK--------EQVMEHM-RANLTGYKVPKAVEFRD------ELPTTNVGKILRRELRDEELKKA  559 (562)
T ss_pred             CC--------CH--------HHHHHHH-HHhhhhccCCcEEEEec------cCCCCCcccccHHHHHHHHHHhc
Confidence            00        11        2233333 36789999999999984      46999999999999998776543

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=2.3e-62  Score=541.84  Aligned_cols=520  Identities=26%  Similarity=0.317  Sum_probs=410.5

Q ss_pred             CCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCC
Q 006115           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (660)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (660)
                      +++-+||+.-...    ...+..++.+++..+++++||++|+++.   +..    +++||.||.++++++|++|.+.|++
T Consensus         5 ~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~   73 (537)
T PLN02246          5 SEEFIFRSKLPDI----YIPNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIR   73 (537)
T ss_pred             cceeEecCCCCCC----CCCCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence            4555666553222    1134568999999999999999999754   211    5799999999999999999999999


Q ss_pred             CCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEe
Q 006115          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (660)
Q Consensus       100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~  179 (660)
                      +||+|+++++|+++++++++||+++|++++|++|.++.+++..+++.++++++|++......+..... . ... .++.+
T Consensus        74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~-~~~-~~i~~  150 (537)
T PLN02246         74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAE-D-DGV-TVVTI  150 (537)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhh-c-CCc-eEEEe
Confidence            99999999999999999999999999999999999999999999999999999999876655433211 0 111 33333


Q ss_pred             cCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccc
Q 006115          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (660)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~  259 (660)
                      +...           .....+.++.... ....+.....++++++++|||||||.||+|+++|++++..+........ .
T Consensus       151 ~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~  217 (537)
T PLN02246        151 DDPP-----------EGCLHFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-P  217 (537)
T ss_pred             CCCC-----------CCceeHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-c
Confidence            3221           1123344444322 1122233456789999999999999999999999999887765432110 0


Q ss_pred             cCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006115          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (660)
Q Consensus       260 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (660)
                      ...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....     
T Consensus       218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----  292 (537)
T PLN02246        218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-----  292 (537)
T ss_pred             ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc-----
Confidence            126789999999999999999865 5667999999999887 899999999999999999999999887542110     


Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecC
Q 006115          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (660)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG  416 (660)
                                                      ...+        .+++|.+++||+++++++.+.+++.+ +..+++.||
T Consensus       293 --------------------------------~~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG  332 (537)
T PLN02246        293 --------------------------------EKYD--------LSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG  332 (537)
T ss_pred             --------------------------------cccC--------ccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence                                            0001        13899999999999999999999988 788999999


Q ss_pred             CCCCCCceecccC---C-CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c
Q 006115          417 LTETCGPTTVCFP---D-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (660)
Q Consensus       417 ~tE~~~~~~~~~~---~-~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~  491 (660)
                      +||++.+++.+..   . ....++++|+|++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...| .
T Consensus       333 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~  410 (537)
T PLN02246        333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDK  410 (537)
T ss_pred             ccccCcccccccccCCCCccccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhcccC
Confidence            9999876544321   1 112346899999999999998 4433 456677899999999999999999999998888 6


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||+.|.+||+|.+|+|++.++.   ..++++++..++.. 
T Consensus       411 ~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-  488 (537)
T PLN02246        411 DGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE-  488 (537)
T ss_pred             CCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC-
Confidence            899999999999999999999999999997 7999999999999999999999999997654   36788888775420 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                             .        +        .++|.++++ ..|+.|+.|+.+.++      +.+|+|++||++|++|++++.
T Consensus       489 -------~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~~------~~~P~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        489 -------I--------T--------EDEIKQFVA-KQVVFYKRIHKVFFV------DSIPKAPSGKILRKDLRAKLA  535 (537)
T ss_pred             -------C--------C--------HHHHHHHHH-hhCcCccccceEEEe------ccCCCCCcchhhHHHHHHHHh
Confidence                   0        1        123344443 689999999999887      446999999999999998864

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.8e-62  Score=553.61  Aligned_cols=526  Identities=19%  Similarity=0.150  Sum_probs=392.5

Q ss_pred             CCCCCCCcH-HHHHHHHHHhCCCCCceeeeccccCC--CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChh
Q 006115           36 SVDSDLNTA-WDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (660)
Q Consensus        36 ~~~~~~~ti-~~~l~~~a~~~pd~~a~~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~  112 (660)
                      +.++...++ ..+|++++.++||++|+++.   +..  ++.++++||+||.+++.++|++|++.|+++||+|+++++|++
T Consensus       168 wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~  244 (728)
T PLN03052        168 WLPGAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNV  244 (728)
T ss_pred             ECCCCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH
Confidence            555444444 45666666678999999986   421  335678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhh-----hccccccccCccEEEEecCCcHHHH
Q 006115          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL-----LSPDCRSAQRLRVMVCFTSLTAEQK  187 (660)
Q Consensus       113 ~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~  187 (660)
                      ++++++|||+++|++++|++|.++++++.+++++++++++|+++.....-     ...+.....  ..++++....... 
T Consensus       245 e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~-  321 (728)
T PLN03052        245 HAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV-  321 (728)
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc-
Confidence            99999999999999999999999999999999999999999987543110     000000001  1122222111000 


Q ss_pred             HHHhhCCceeeeHHHHHhcCcc----CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC
Q 006115          188 EMAVQTGIKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (660)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (660)
                      .  ........+|++++.....    .........++++++|+|||||||.||||+++|.+++..+......+     ++
T Consensus       322 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l  394 (728)
T PLN03052        322 R--VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DI  394 (728)
T ss_pred             c--cccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CC
Confidence            0  0000112357776543211    11111223568999999999999999999999998877665544434     67


Q ss_pred             CCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       264 ~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      .++|++++..|+.|.++...++.+|..|++++++++  ++..+++.++++++|++.++|+++..|.+..           
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-----------  463 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-----------  463 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-----------
Confidence            889999999999999998777788999999999875  5678999999999999999999998875421           


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCC
Q 006115          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTET  420 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~  420 (660)
                                                ..+..++        ++||.++++|++++++...++.+.++ .++.+.||+||+
T Consensus       464 --------------------------~~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~  509 (728)
T PLN03052        464 --------------------------CMAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTEL  509 (728)
T ss_pred             --------------------------CcccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhh
Confidence                                      0011223        38999999999999999888887765 589999999999


Q ss_pred             CCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCC--cccccCCCchhhhhccc-----CC
Q 006115          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG  493 (660)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~--~~~gy~~~~~~~~~~f~-----~g  493 (660)
                      ++.+...........+++|.|++|++++|+| +++..++.+..+.|||+++++.  ...+|+++. ....-|.     .|
T Consensus       510 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g  587 (728)
T PLN03052        510 GGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNG  587 (728)
T ss_pred             CcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCC
Confidence            8755433322223447899999999999999 7766544332246999998653  335666653 2222231     23


Q ss_pred             --ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHh-cCcCcceEEEEecCCC----CeEEEEEEcC--h
Q 006115          494 --WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDIWVYGDSLK----SMLVAVVVPC--E  564 (660)
Q Consensus       494 --~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~-~~p~V~~~~v~~~~~~----~~~~a~v~~~--~  564 (660)
                        ||+|||++++|++|.++++||.||+|++ +|++|+|.|||++|. .||.|.||+|++.+++    +.++++|+++  +
T Consensus       588 ~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~  666 (728)
T PLN03052        588 KILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPP  666 (728)
T ss_pred             CEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCC
Confidence              8999999999999999999999999996 899999999999995 8999999999998754    4689999987  3


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +..                .+.+++++.+.    +++ +..|+++.+|+.|++++      .+|+|.+||++|+.|++.+
T Consensus       667 g~~----------------~~~~~L~~~i~----~~i-~~~l~~~~~p~~i~~v~------~lP~T~sGKi~Rr~Lr~~~  719 (728)
T PLN03052        667 GSN----------------PDLNELKKIFN----SAI-QKKLNPLFKVSAVVIVP------SFPRTASNKVMRRVLRQQL  719 (728)
T ss_pred             CCC----------------CCHHHHHHHHH----HHH-HhhcCCccCCCEEEEcC------CCCCCCchHHHHHHHHHHH
Confidence            210                01233444444    444 36788999999888874      4699999999999999988


Q ss_pred             HHHHH
Q 006115          645 QVEID  649 (660)
Q Consensus       645 ~~~l~  649 (660)
                      .+.+.
T Consensus       720 ~~~~~  724 (728)
T PLN03052        720 AQELS  724 (728)
T ss_pred             Hhhhh
Confidence            77653

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-62  Score=543.60  Aligned_cols=512  Identities=24%  Similarity=0.294  Sum_probs=408.3

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCChhhHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      ....|+.++|.++++++|+++|+++.   +      +++||+||.+++.++|.+|.+. |+++||+|+++++|+++++++
T Consensus         7 ~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~   77 (546)
T PRK08314          7 LPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIA   77 (546)
T ss_pred             CCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHH
Confidence            33578999999999999999999875   3      4799999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH--HH-----HH--
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQ-----KE--  188 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-----~~--  188 (660)
                      ++||+++|++++|++|..+.+++.++++.+++++++++......+.......  .+..++.......  ..     ..  
T Consensus        78 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (546)
T PRK08314         78 YYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWL  155 (546)
T ss_pred             HHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccc
Confidence            9999999999999999999999999999999999999987766553322111  1222222210000  00     00  


Q ss_pred             -----HHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC
Q 006115          189 -----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (660)
Q Consensus       189 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (660)
                           .....+.....|.++.....  ........++++++++|||||||.||+|.++|++++..+......+     ++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~  228 (546)
T PRK08314        156 RAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NS  228 (546)
T ss_pred             ccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CC
Confidence                 00000112334555544321  1223345678999999999999999999999999999888776666     78


Q ss_pred             CCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       264 ~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+.+.++++++|++.++|+++..++....          
T Consensus       229 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~----------  298 (546)
T PRK08314        229 TPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG----------  298 (546)
T ss_pred             CCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC----------
Confidence            89999999999999999865 5677999999999886 89999999999999999999999887754210          


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCC
Q 006115          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~  421 (660)
                                                 ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++
T Consensus       299 ---------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  343 (546)
T PRK08314        299 ---------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETM  343 (546)
T ss_pred             ---------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccc
Confidence                                       011111        379999999999999999999998899999999999998


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--Ccccc
Q 006115          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHT  497 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--~--g~~~T  497 (660)
                      .......... ....++|.|+++++++++| ++++ ..++.|+.|||+|+|++++.||+++++.+.+.|.  +  +||+|
T Consensus       344 ~~~~~~~~~~-~~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~T  420 (546)
T PRK08314        344 AQTHSNPPDR-PKLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRT  420 (546)
T ss_pred             cceecCCCcC-CCCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEec
Confidence            8766544332 2347899999999999999 5433 3445668999999999999999999999988873  3  49999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006115          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+|+++.+|.+++.||.+|+|++ +|.+|+|.+||++|.++|+|.+++|++.++.   +.++++++++.+..       
T Consensus       421 GDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~-------  492 (546)
T PRK08314        421 GDLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEAR-------  492 (546)
T ss_pred             CCEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCC-------
Confidence            999999999999999999999997 7999999999999999999999999997655   47889998876430       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         ..+    .        .+.++++++ ..|+.|++|+.+++++      .+|+|++||++|++|++..+.
T Consensus       493 ---~~~----~--------~~~l~~~~~-~~l~~~~~P~~~~~v~------~iP~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        493 ---GKT----T--------EEEIIAWAR-EHMAAYKYPRIVEFVD------SLPKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             ---CCC----C--------HHHHHHHHH-HhcccCCCCcEEEEec------CCCCCCccceeHHHHHHHHhh
Confidence               000    0        123444443 7899999999999984      459999999999999876544

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-62  Score=535.36  Aligned_cols=477  Identities=26%  Similarity=0.321  Sum_probs=397.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +.++.+.|.++|.++||++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999864   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.++++.+++++..........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876544321100                              0013


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      +++...............++++++++|||||||.||+|.++|.++...+......+     ++..+|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            33332221122222344678999999999999999999999999888776655555     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Q 006115          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+...+.                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            8888888999999999887 9999999999999999999999999886432110                          


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC-CccccCcc
Q 006115          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA  438 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~  438 (660)
                                          ....++|.+++||+++++...+.+++. ++++++.||+||++..+...... .....+++
T Consensus       251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                                001389999999999999999988874 99999999999987654433332 33445889


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCe
Q 006115          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (660)
Q Consensus       439 G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~  518 (660)
                      |+|++++++++++ +.   .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+
T Consensus       310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~  385 (483)
T PRK03640        310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL  385 (483)
T ss_pred             ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence            9999999999988 43   3566778999999999999999999999999999999999999999999999999999999


Q ss_pred             eEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 006115          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (660)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (660)
                      +++ +|.+|++.+||+.+.++|+|.+++|++.+++   ..++++++.....                  +.        +
T Consensus       386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~--------~  438 (483)
T PRK03640        386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------TE--------E  438 (483)
T ss_pred             EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------CH--------H
Confidence            996 8999999999999999999999999987654   3567767654322                  11        2


Q ss_pred             HHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       596 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .++++++ ..|+.|++|..|++++      .+|+|++||++|++|++++++
T Consensus       439 ~l~~~~~-~~l~~~~~p~~i~~~~------~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        439 ELRHFCE-EKLAKYKVPKRFYFVE------ELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             HHHHHHH-HhccCCCCCcEEEEeC------CCCCCCccceeHHHHHHHHhh
Confidence            2334443 6799999999999874      459999999999999999874

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-62  Score=546.05  Aligned_cols=517  Identities=25%  Similarity=0.336  Sum_probs=409.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|+++++++||++|+.+.    +     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            358999999999999999999874    3     4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH---HHH----------
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---EQK----------  187 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~----------  187 (660)
                      |+++|++++|++|.++.+++.++++.++++++|+++.....+..... . .....++..+....   ...          
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRR-T-TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhh-c-cccceeEeeecccccccccccccccccccc
Confidence            99999999999999999999999999999999998876554422211 1 11222322221000   000          


Q ss_pred             ----HHHhhCCceeeeHHHHHhcCccCC---ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccccc
Q 006115          188 ----EMAVQTGIKPYSWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (660)
Q Consensus       188 ----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (660)
                          ...........+|.++........   .......++++++++|||||||.||+|.+||.++...+......+..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                000000112345666554321110   12223567899999999999999999999999998877654333210  


Q ss_pred             CCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006115          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       261 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                       ....++++++.+|++|.+|+.. .+.+++.|+++++.+. ++..+++.++++++|++.++|++++.|.+......    
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----  332 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG----  332 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence             1234789999999999999875 4567889999988876 99999999999999999999999998875322110    


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCC
Q 006115          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~t  418 (660)
                                                       .++        ++||.+++||+++++++.+.+.+.++.++++.||+|
T Consensus       333 ---------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        333 ---------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             ---------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                             011        389999999999999999999988899999999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccC
Q 006115          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TG  498 (660)
                      |++++++.........++++|.|++++.++|+| +++...+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  450 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG  450 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence            999877665544334457899999999999999 5542345667789999999999999999999999999988999999


Q ss_pred             ceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCC
Q 006115          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  575 (660)
Q Consensus       499 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~  575 (660)
                      |+|+++++|.+++.||.+|+|+. +|++|+|.+||+++.+|+.|.+++|++.++.   +.++++++++++..        
T Consensus       451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~--------  521 (573)
T PRK05605        451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA--------  521 (573)
T ss_pred             CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCC--------
Confidence            99999999999999999999996 8999999999999999999999999987644   47888888775420        


Q ss_pred             CCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006115          576 HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~  649 (660)
                      .        +.        +.|+++++ ..|+.+++|..++++      +.+|+|.+||++|++|++++.+++.
T Consensus       522 ~--------~~--------~~l~~~~~-~~l~~~~~p~~i~~~------~~iP~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        522 L--------DP--------EGLRAYCR-EHLTRYKVPRRFYHV------DELPRDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             C--------CH--------HHHHHHHH-HhCccccCCcEEEEe------ccCCCCCcccccHHHHHHHHHHHhc
Confidence            0        11        23444443 678999999999887      4469999999999999999977653

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-62  Score=547.31  Aligned_cols=518  Identities=21%  Similarity=0.260  Sum_probs=409.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..|+.++|+++|..+||++|+++.   +.   +++++||.||.+++.++|.+|.+ .|+++||+|+++++|+++++++++
T Consensus         9 ~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l   82 (576)
T PRK05620          9 PLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF   82 (576)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            368999999999999999999874   22   24789999999999999999996 799999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|+++++++|..+.+++.++++.++++++|+++.....+..... .....+.++..+..................+
T Consensus        83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  161 (576)
T PRK05620         83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGIKVYS  161 (576)
T ss_pred             HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccccccccc
Confidence            999999999999999999999999999999999999876655433222 2334444554443221111111111233456


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcc--cccccccCCCCCCcEEEEecChhh
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~--~~~~~~~~~~~~~d~~l~~~p~~~  277 (660)
                      |.++..... .........++++++++|||||||.||+|.++|+++........  ..+     .+..++++++.+|++|
T Consensus       162 ~~~l~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h  235 (576)
T PRK05620        162 YEALLDGRS-TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYH  235 (576)
T ss_pred             HHHHhhcCC-CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHH
Confidence            777775432 22223345678999999999999999999999999865544322  223     6788999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .+++...+.++..|+++++...  ++..+++.++++++|+++++|+++..++.......                     
T Consensus       236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  294 (576)
T PRK05620        236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------  294 (576)
T ss_pred             hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------
Confidence            9998878888999999988753  89999999999999999999999988765321100                     


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC----
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                              ....++|.+++||+++++.+.+.+++.+|+++++.||+||++..++......    
T Consensus       295 ------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  350 (576)
T PRK05620        295 ------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSG  350 (576)
T ss_pred             ------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccc
Confidence                                    0003799999999999999999999888999999999999988765443221    


Q ss_pred             ---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh----------------hhcc-c
Q 006115          432 ---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI-I  491 (660)
Q Consensus       432 ---~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~----------------~~~f-~  491 (660)
                         .....++|++.+++++++++ + +...+...++.|||+++|++++.||+++++.+                ...| .
T Consensus       351 ~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~  428 (576)
T PRK05620        351 EARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA  428 (576)
T ss_pred             ccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccccc
Confidence               11224789999999999998 5 44444445678999999999999999998877                2234 5


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHH
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~  568 (660)
                      +|||+|||++++++||.+++.||.+|+|+. +|.+|+|.+||+.|.+||.|.+|+|++.++..   .+++++++.++...
T Consensus       429 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~  507 (576)
T PRK05620        429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP  507 (576)
T ss_pred             CCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCc
Confidence            789999999999999999999999999995 89999999999999999999999999987653   67888877654210


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                                       .+    ...+.|+++++ +.|+.|++|+.|++++      .+|+|++||++|++|++++++.
T Consensus       508 -----------------~~----~~~~~l~~~l~-~~L~~~~~P~~i~~v~------~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        508 -----------------TR----ETAERLRDQLR-DRLPNWMLPEYWTFVD------EIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             -----------------cc----ccHHHHHHHHH-hhCccccCCeEEEEec------cCCCCCcccCcHHHHHHHHhcC
Confidence                             00    01234445554 7899999999999974      4599999999999999998864

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-62  Score=540.72  Aligned_cols=490  Identities=20%  Similarity=0.189  Sum_probs=393.8

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.+.|.++++++||++|++..   +      +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999853   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++++.++++++|++......+..... .......++..++...            ...++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDEDH------------DLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCcc------------cccHH
Confidence            9999999999999999999999999999999999876554422211 1122222333222110            11333


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  281 (660)
                      .+.......   .....+++.++++|||||||.||+|.++|.+++.....+...+     .+..+++++...|++|.+|+
T Consensus       181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            333322111   1123467899999999999999999999998888777665555     57788999999999999998


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Q 006115          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.++..|+++++... ++..+++.++++++|++.++|+++..|++.....                           
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------  305 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV---------------------------  305 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence            777888899999888765 8999999999999999999999999886521110                           


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCC
Q 006115          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                              .+..+        .+++|.+++||+++++++.+.|.+.++.++++.||+||++.+++.+.......++++|.
T Consensus       306 --------~~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        306 --------RNRYS--------GRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             --------cccCC--------ccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                    00001        13899999999999999999999999999999999999998766544332334578999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeE
Q 006115          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       441 ~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      |+++++++++| +++.  +++.|+.|||+++|++++.||+  ++.+. .+.+|||+|||+++++++|++++.||.+|+|+
T Consensus       370 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik  443 (537)
T PRK13382        370 PAEGTEIRILD-QDFR--EVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV  443 (537)
T ss_pred             cCcCcEEEEEC-CCCC--CCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence            99999999999 6554  4556789999999999999998  33343 45689999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006115          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      . +|++|+|.+||..|.+||+|.+|+|++.++.   +.++++|++.++..        .        .        .+++
T Consensus       444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l  498 (537)
T PRK13382        444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS--------A--------T--------PETL  498 (537)
T ss_pred             E-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC--------C--------C--------HHHH
Confidence            6 8999999999999999999999999998755   36888888765420        0        0        1234


Q ss_pred             HHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++++ ..|+.|++|+.+.+++      .+|+|++||++|++|++
T Consensus       499 ~~~l~-~~l~~~~~P~~i~~v~------~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        499 KQHVR-DNLANYKVPRDIVVLD------ELPRGATGKILRRELQA  536 (537)
T ss_pred             HHHHH-HhccCCCCCcEEEEec------cCCCCCCCCCcHHhhCC
Confidence            44443 7899999999999884      45999999999999864

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-62  Score=536.85  Aligned_cols=486  Identities=22%  Similarity=0.255  Sum_probs=396.5

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..+.+.|.++|+++||++|+++.    +     +.+||.||.++++++|++|.+ .|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            45889999999999999999863    3     689999999999999999985 6999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++..+++.++++++++++.....+... ... .....++.+.+                  +
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~~------------------~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSM-QKV-SYVQRVISITS------------------L  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHh-hhc-cCcceEEEecc------------------h
Confidence            999999999999999999999999999999999988765443221 111 11122222221                  2


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .++....   ........++++++++|||||||.||+|.++|.++..........+     ++..+|++++.+|++|.+|
T Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  204 (496)
T PRK06839        133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG  204 (496)
T ss_pred             HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence            2222111   1122344668999999999999999999999999876655544444     6788999999999999999


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.++......                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  259 (496)
T PRK06839        205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------  259 (496)
T ss_pred             HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence            875 4667899999888766 9999999999999999999999999886532110                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC-CccccCc
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT  437 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~  437 (660)
                                  .        ...+++|.+++||+++++++.+.+++. |+++.+.||+||++..++..... .....++
T Consensus       260 ------------~--------~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  318 (496)
T PRK06839        260 ------------T--------TNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS  318 (496)
T ss_pred             ------------c--------CCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence                        0        011489999999999999999999886 99999999999999765544332 2334578


Q ss_pred             cCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCC
Q 006115          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN  517 (660)
Q Consensus       438 ~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d  517 (660)
                      +|.|+++++++|++ +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+++++++|.+++.||.+|
T Consensus       319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d  395 (496)
T PRK06839        319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE  395 (496)
T ss_pred             CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence            99999999999999 66654  5677899999999999999999999999888999999999999999999999999999


Q ss_pred             eeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 006115          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (660)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (660)
                      +|+. +|.+|+|.+||++|.++|+|.+|+|++.++..   .++++|+++++..        .        ..        
T Consensus       396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~~--------  450 (496)
T PRK06839        396 MIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV--------L--------IE--------  450 (496)
T ss_pred             eEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------CH--------
Confidence            9995 89999999999999999999999999977553   6888998876420        0        11        


Q ss_pred             HHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          595 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       595 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      ++|+++++ ..|+.|++|..+++++      .+|+|++||++|++|+++.+
T Consensus       451 ~~l~~~~~-~~l~~~~~P~~~~~v~------~~P~t~~GKi~r~~l~~~~~  494 (496)
T PRK06839        451 KDVIEHCR-LFLAKYKIPKEIVFLK------ELPKNATGKIQKAQLVNQLK  494 (496)
T ss_pred             HHHHHHHH-hhCcCCCCCcEEEEec------cCCCCccccccHHHHHHHhh
Confidence            23334443 6799999999999884      45999999999999998765

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-62  Score=532.06  Aligned_cols=476  Identities=19%  Similarity=0.199  Sum_probs=390.0

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      +++.+.|+++|+++||++|+.+.   +      .++||.||.+++.++|.+|.+.|. +||+|+++++|++++++++|||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            46889999999999999999864   3      479999999999999999999884 8999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++++.+++++++++......+...      . ..++..+.                  +.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence            99999999999999999999999999999999998654433210      0 11222211                  11


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  281 (660)
                      +..... ...........+++++++|||||||.||+|+++|++++..+......+     ++.++|+++...|++|..++
T Consensus       126 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l  199 (487)
T PRK07638        126 RMIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL  199 (487)
T ss_pred             hhhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence            111111 011111122356789999999999999999999999998887766555     78899999999999999887


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Q 006115          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..|.+...                             
T Consensus       200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  250 (487)
T PRK07638        200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR-----------------------------  250 (487)
T ss_pred             HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence            777888999999998876 89999999999999999999999998865300                             


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCccC
Q 006115          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  439 (660)
                                          ...+.+.++++|+.++..+.+.+++.+ ++.+++.||+||++.++............++|
T Consensus       251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence                                002556678899999999999999888 78999999999999876655433334457899


Q ss_pred             CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCee
Q 006115          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       440 ~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      .|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|++|++|++++.||.+|+|
T Consensus       311 ~~~~~~~~~i~d-~~g~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        311 RPFHNVQVRICN-EAGE--EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             cccCCcEEEEEC-CCCC--CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            999999999999 6554  4566789999999999999999999888887789999999999999999999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006115          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      ++ +|.+|+|.+||++|.+||+|.+|+|++.+++   ..++++++....                    .        +.
T Consensus       388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~--------------------~--------~~  438 (487)
T PRK07638        388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT--------------------K--------QQ  438 (487)
T ss_pred             Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC--------------------H--------HH
Confidence            96 8999999999999999999999999998765   467777764221                    1        12


Q ss_pred             HHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +++++ +..|+.|++|+.+++++      .+|+|++||++|++|++++.+
T Consensus       439 l~~~~-~~~l~~~~~p~~i~~v~------~iP~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        439 LKSFC-LQRLSSFKIPKEWHFVD------EIPYTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             HHHHH-HHHhhcccCCcEEEEec------ccCCCCcccccHHHHHHHHhc
Confidence            23333 25788999999999874      459999999999999987654

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-61  Score=536.39  Aligned_cols=507  Identities=21%  Similarity=0.274  Sum_probs=401.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.++|+++++++|+.+++.+.     ..++++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~   84 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV   84 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57999999999999998887653     1233578999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|++|.++.+++..+++.+++++++++......+.+. .........++...+....     ........+++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  158 (539)
T PRK07008         85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDAL-APQCPNVKGWVAMTDAAHL-----PAGSTPLLCYE  158 (539)
T ss_pred             HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHH-HhhCCCceEEEEEccCCcc-----ccCCcccccHH
Confidence            99999999999999999999999999999999998765543322 2223344444444332110     00112245666


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhh--hcccccccccCCCCCCcEEEEecChhhHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      ++...... ........++++++++|||||||.||+|++||++++....  .+...+     ++..+|+++...|++|..
T Consensus       159 ~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~  232 (539)
T PRK07008        159 TLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVN  232 (539)
T ss_pred             HHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhh
Confidence            66544322 1122345678899999999999999999999999864322  222233     677899999999999988


Q ss_pred             HHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115          280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      ++...+.++..|+++++.+.  ++..+++.++++++|++.++|+++..+++.....                        
T Consensus       233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------  288 (539)
T PRK07008        233 AWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------  288 (539)
T ss_pred             hHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------
Confidence            87777778899999998754  8999999999999999999999999886532111                        


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC------
Q 006115          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------  431 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~------  431 (660)
                                   ..+        .+++|.++++|+++++++.+.+.+.+++++++.||+||++..++.+....      
T Consensus       289 -------------~~~--------~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  347 (539)
T PRK07008        289 -------------GLR--------FSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLP  347 (539)
T ss_pred             -------------CCC--------cccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCC
Confidence                         001        14899999999999999999999889999999999999987655432111      


Q ss_pred             ----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC
Q 006115          432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (660)
Q Consensus       432 ----~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G  507 (660)
                          .....++|.|+|+++++|+| +++...+.+.++.|||+++|+.++.||++++.   ..+.+|||+|||++++|+||
T Consensus       348 ~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg  423 (539)
T PRK07008        348 LDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADG  423 (539)
T ss_pred             chhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCC
Confidence                11236789999999999999 66665555555689999999999999999873   34568999999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      .+++.||.+|+|+. +|.+|+|.+||+++..||.|.+++|++.++.   ..++++|+..++..        .        
T Consensus       424 ~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------  486 (539)
T PRK07008        424 FMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAE--------V--------  486 (539)
T ss_pred             cEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCc--------c--------
Confidence            99999999999995 8999999999999999999999999997764   36777777665320        0        


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +        .+.+.++++ ++|+.|++|+.++++      +.+|+|++||++|++|++++.+
T Consensus       487 ~--------~~~l~~~~~-~~l~~~~~P~~i~~v------~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        487 T--------REELLAFYE-GKVAKWWIPDDVVFV------DAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             C--------HHHHHHHHH-hhcccccCCeEEEEe------cCCCCCCccceeHHHHHHHHHh
Confidence            1        123444443 678999999999987      4569999999999999998865

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=6.9e-62  Score=537.50  Aligned_cols=501  Identities=21%  Similarity=0.229  Sum_probs=401.6

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH
Q 006115           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~  115 (660)
                      ..|...+++.++|+++|+++||++|++..   +      +++||.||.+++.++|.+|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            34455688999999999999999999864   3      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006115          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       116 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      ++++||+++|++++|+++.++.+++..+++.+++++++++......+..... .......++.++.....         .
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~  155 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADP-GDLPLPAVWLLDAPASV---------S  155 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcc-cccCcceEEEecCcccc---------c
Confidence            9999999999999999999999999999999999999999877665533221 11223444444432110         0


Q ss_pred             eeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh
Q 006115          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (660)
                      ....+..................++++++++|||||||.||+|.++|.++..........+     ++..++++++.+|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  230 (542)
T PRK06155        156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL  230 (542)
T ss_pred             cccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence            0001111000000111122344678999999999999999999999999988776665555     78899999999999


Q ss_pred             hhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       276 ~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      +|..++...+.++..|+++++.+. ++..++..++++++|+++++|+++..|.+......                    
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06155        231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------  290 (542)
T ss_pred             HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence            999999878888999999988876 89999999999999999999999887754311000                    


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                               ...+++|.++.+|  +++.+.+.+++.+++++++.||+||++..+.....  ...
T Consensus       291 -------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~  341 (542)
T PRK06155        291 -------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQR  341 (542)
T ss_pred             -------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCC
Confidence                                     0113788877665  57888899998899999999999999887665432  233


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006115          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       435 ~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~---~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      .+++|.++++++++|++ +++.  +++.|+.|||+++|+   .++.||+++++.+...|.++||+|||+|+++++|.+++
T Consensus       342 ~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i  418 (542)
T PRK06155        342 PGSMGRLAPGFEARVVD-EHDQ--ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF  418 (542)
T ss_pred             CCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence            47899999999999998 5543  455668999999998   68999999999999999999999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++   ..+.+++++..+..        .        +   
T Consensus       419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~--------~--------~---  478 (542)
T PRK06155        419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA--------L--------E---  478 (542)
T ss_pred             EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC--------C--------C---
Confidence            9999999995 8999999999999999999999999987764   46777777765320        0        1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                           ...+.++++ ..|+.|++|..+.+++      .+|+|++||++|++|++++
T Consensus       479 -----~~~~~~~~~-~~l~~~~~P~~i~~~~------~iP~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        479 -----PVALVRHCE-PRLAYFAVPRYVEFVA------ALPKTENGKVQKFVLREQG  522 (542)
T ss_pred             -----HHHHHHHHH-hhCcCccCCcEEEEec------cCCCCcccceeHHHHHhhc
Confidence                 123334443 6799999999999874      4699999999999999876

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-62  Score=540.61  Aligned_cols=507  Identities=23%  Similarity=0.283  Sum_probs=393.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +...++.++|+++++++||++|+++.   ++.    +++||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~   85 (534)
T PRK05852         13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL   85 (534)
T ss_pred             hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence            44578999999999999999999874   321    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|+++++++|.++.+++.++|+.++++++|++............   ......+.+......      .......
T Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~  156 (534)
T PRK05852         86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLSV  156 (534)
T ss_pred             HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------ccccccc
Confidence            9999999999999999999999999999999999998753321111000   001111111110000      0000000


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      .+......  ...........++.++++|||||||.||+|.++|+++...+......+     ++..+|++++..|++|.
T Consensus       157 ~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~  229 (534)
T PRK05852        157 HLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHG  229 (534)
T ss_pred             ccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchh
Confidence            01000000  000111122357889999999999999999999999998888776666     78899999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          279 LDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      +++.. ++.+++.|+++++...   ++..+++.++++++|+++++|+++..|.+.......                   
T Consensus       230 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  290 (534)
T PRK05852        230 HGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS-------------------  290 (534)
T ss_pred             HHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc-------------------
Confidence            99876 5667888988887542   788999999999999999999999988654211000                   


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC----
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----  430 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~----  430 (660)
                                              ....+++|.+.++|+++++.+.+.+.+.++.++++.||+||++..++.....    
T Consensus       291 ------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  346 (534)
T PRK05852        291 ------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ  346 (534)
T ss_pred             ------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccccc
Confidence                                    0011489999999999999999999999999999999999998766543321    


Q ss_pred             CccccCccCCC--ccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006115          431 EMCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (660)
Q Consensus       431 ~~~~~~~~G~~--~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~  508 (660)
                      ......+.|.+  .++++++++| +++.  +++.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       347 ~~~~~~~~g~~g~~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~  423 (534)
T PRK05852        347 TENPVVSTGLVGRSTGAQIRIVG-SDGL--PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGD  423 (534)
T ss_pred             ccCcccccccCCCCCCCeEEEEC-CCCC--CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCc
Confidence            01111233443  6899999998 6654  45567899999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++.||.+|+|+. +|.+|+|.+||++|.++|+|.+|+|++.+++   ..++++|+.++..        ..        +
T Consensus       424 l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~--------~~--------~  486 (534)
T PRK05852        424 LSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESA--------PP--------T  486 (534)
T ss_pred             EEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCC--------CC--------C
Confidence            9999999999995 8999999999999999999999999998765   3678888875432        00        1


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                              .++|.+.++ .+||.|++|+.+.+++      .+|+|++||++|++|+++|..
T Consensus       487 --------~~~i~~~~~-~~l~~~~~P~~i~~v~------~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        487 --------AEELVQFCR-ERLAAFEIPASFQEAS------GLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             --------HHHHHHHHH-HhcccccCCeEEEEhh------hcCCCCCccccHHHHHHHhcc
Confidence                    123444443 6789999999999874      459999999999999998853

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.9e-62  Score=536.35  Aligned_cols=507  Identities=28%  Similarity=0.356  Sum_probs=419.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.++|.++++.+|+++|+.+.   +      +.+||.||+++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999875   4      359999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++++++.++.+++..+++.+++++++++......+.+. .......+.++..++....      ........
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI-LPQLPTVRTVIVEGDGPAA------PLAPEVGE  147 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHH-hhccCCccEEEEecCcccc------cccccccc
Confidence            9999999999999999999999999999999999998876655332 2233444455555443210      01122345


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      +.++...... ........++++++++|||||||.||+|.+||.++...+......+     ++..++++++.+|++|.+
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        148 YEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             HHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            5555544322 2223345678999999999999999999999999998888776666     789999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ++...+.++..|+++++++. ++..+++.++++++|+++++|+++..|.+.....                         
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------------------------  276 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------------------------  276 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------
Confidence            98887779999999998876 8999999999999999999999999886532210                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc-----c
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----C  433 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-----~  433 (660)
                                  ..+        .+++|.+++||+++++.+.+.+.+.+++++++.||+||++.++........     .
T Consensus       277 ------------~~~--------~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        277 ------------FVD--------FSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             ------------ccC--------cchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                        001        138999999999999999999999889999999999999887666544332     2


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      ...++|.|++++.++|++ +++...+.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+++++++|.+++.|
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G  415 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD  415 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence            457899999999999999 7766555544789999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006115          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|.+++|.+||+.|.++++|.+++|++.++.   ..+++++++.++..        .        +.    
T Consensus       416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~~----  474 (521)
T PRK06187        416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT--------L--------DA----  474 (521)
T ss_pred             cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC--------C--------CH----
Confidence            99999997 8999999999999999999999999987644   47888888765420        0        11    


Q ss_pred             HHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                          +.+.+++ +..|+.+.+|..+++++      .+|+|++||++|++|+++|++
T Consensus       475 ----~~l~~~l-~~~l~~~~~p~~i~~v~------~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        475 ----KELRAFL-RGRLAKFKLPKRIAFVD------ELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             ----HHHHHHH-HHhccCCCCceEEEEcc------CCCCCCCCCeeHHHHHHHHhc
Confidence                1223333 36789999999999874      469999999999999999864

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.6e-62  Score=535.73  Aligned_cols=502  Identities=24%  Similarity=0.332  Sum_probs=411.9

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ..+.++.+.|.+.++.+|+++|+.+.    +     +++||.||.+.+.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34588999999999999999999874    3     47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++|+++..+.+.+..+++.++++++++++.......... ........++........      .......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence            999999999999999999999999999999999999987665443221 223344444444332210      0001224


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      +|.++...... ........++++++++|||||||.||+|.++|.++...+..+...+     ++.+++++++.+|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            56666554322 1233445788999999999999999999999999998888776666     78899999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......                      
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------  277 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------  277 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence            99876 5777999999988765 89999999999999999999999998865321100                      


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceecccCCCccc-
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM-  434 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~-  434 (660)
                                     ..        .+++|.+++||+++++++.+.+.+.++. ++++.||+||++++++.+..+.... 
T Consensus       278 ---------------~~--------~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  334 (513)
T PRK07656        278 ---------------ED--------LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT  334 (513)
T ss_pred             ---------------CC--------ccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence                           01        1489999999999999999999998988 8999999999988877766544322 


Q ss_pred             -cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-CCccccCceEEECCCCcEEEE
Q 006115          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       435 -~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-~g~~~TGDl~~~~~~G~l~~~  512 (660)
                       .+++|.|+++++++++| +++.  +++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++.+|.+++.
T Consensus       335 ~~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~  411 (513)
T PRK07656        335 VAGTIGTAIAGVENKIVN-ELGE--EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV  411 (513)
T ss_pred             cCCCccccCCCcEEEEEC-CCCC--CCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence             57899999999999998 5554  455678999999999999999999999888884 899999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.+|+|++ +|.++++.+||+.|.++|+|.+++|++.++.   ..++++++.+.+.        ..        +.   
T Consensus       412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~--------~~---  471 (513)
T PRK07656        412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------EL--------TE---  471 (513)
T ss_pred             ecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CC--------CH---
Confidence            999999997 8999999999999999999999999986644   3678888876422        00        11   


Q ss_pred             HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                           +.+.+++ +..||.+.+|..++++      +.+|+|++||++|++|++
T Consensus       472 -----~~l~~~~-~~~l~~~~~p~~i~~v------~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        472 -----EELIAYC-REHLAKYKVPRSIEFL------DELPKNATGKVLKRALRE  512 (513)
T ss_pred             -----HHHHHHH-HhhcccccCCCEEEEe------cCCCCCCccceeHHHHhc
Confidence                 2233334 3679999999999988      446999999999999875

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-62  Score=555.66  Aligned_cols=477  Identities=21%  Similarity=0.196  Sum_probs=385.3

Q ss_pred             CcHHHHHHHHHHh--CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        42 ~ti~~~l~~~a~~--~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      .++.++|..++++  +||++|+...          ..+||.||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3688999988886  7999999743          259999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654432110         000                     0


Q ss_pred             HHHHHhcCc-cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcc-cccccccCCCCCCcEEEEecChhh
Q 006115          200 WDEFLHLGK-VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~~  277 (660)
                      ..++..... ..+....+..++++++++|||||||.||+|.++|+++.+.+..+. ..+     ++..+|++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            001111000 011112234578999999999999999999999999988776543 233     6788999999999999


Q ss_pred             HHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+++.. ++.++..|+++++.+.  ++..+...++++++|+++++|+++..+++....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            888754 5677999999998874  788889999999999999999999887643110                      


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCcc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                               ...++||.+++||+++++++.+.+.+.+ ++++++.||+||++.++....... .
T Consensus       257 -------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~  310 (705)
T PRK06060        257 -------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W  310 (705)
T ss_pred             -------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence                                     0013899999999999999999999888 589999999999987655443322 2


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      ..+++|+|+++++++|++ +++.  +++.|+.|||||+|+.++.||+++++.+..  .+|||+|||+|+++++|++++.|
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G  385 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC  385 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence            347899999999999998 5554  456678999999999999999999876432  47999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006115          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.   ..++++|++..+..                 .+.+  
T Consensus       386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----------------~~~~--  445 (705)
T PRK06060        386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-----------------IDGS--  445 (705)
T ss_pred             ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-----------------cChH--
Confidence            99999997 7999999999999999999999999987654   37888888765320                 0111  


Q ss_pred             HHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                        ....+.++++ ..||.|++|..|++++      .+|+|++||++|++|++.+.
T Consensus       446 --~~~~i~~~l~-~~L~~~~~P~~i~~v~------~iP~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        446 --VMRDLHRGLL-NRLSAFKVPHRFAVVD------RLPRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             --HHHHHHHHHH-HhCCCCcCCcEEEEee------cCCCCcchhhHHHHHHhhcc
Confidence              1233444554 6899999999999984      46999999999999998764

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=8.3e-62  Score=535.45  Aligned_cols=503  Identities=23%  Similarity=0.272  Sum_probs=399.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      .+++.++|+++|+++||++|+.+.   + ..+.++++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            368999999999999999999875   4 334567899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|+++++++|..+.+++.++++.+++++++++......+.+.........+.++..+....        ......++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccCH
Confidence            9999999999999999999999999999999999987665543332222233444544443211        01122344


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .++............+..++++++++|||||||.||+|++||.++...........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            44433322211222344678999999999999999999999999986543222111     4678899999999999877


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ... ++.++..|+++++.+. ++..+++.++++++|++.++|++++.+.......                         
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  283 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA-------------------------  283 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-------------------------
Confidence            665 5667889999999876 8999999999999999999999998875321000                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCcc
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (660)
                               ..           ...+++.+.++ .++++.....+.+.+++++++.||+||++..+............++
T Consensus       284 ---------~~-----------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        284 ---------ND-----------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             ---------cc-----------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                     00           00267777765 4788888888888889999999999999876655444444455789


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc---CCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEec
Q 006115          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       439 G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g---~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      |.|+++++++++| +++.  +++.|+.|||+++|   ++++.||+++++.+.+.| .+|||+|||+|++|++|.+++.||
T Consensus       343 G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR  419 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR  419 (517)
T ss_pred             ccCCCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeec
Confidence            9999999999999 6554  45567899999998   689999999999999998 689999999999999999999999


Q ss_pred             cCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHH
Q 006115          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (660)
Q Consensus       515 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (660)
                      .+|+|+. +|++|+|.+||+++.+||.|.+|+|++.++.   +.++++|+++.+..        .        +      
T Consensus       420 ~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~--------~--------~------  476 (517)
T PRK08008        420 RCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET--------L--------S------  476 (517)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC--------C--------C------
Confidence            9999996 7999999999999999999999999998754   37888888876420        0        1      


Q ss_pred             HHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          592 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       592 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                        .++|.++++ ..++.|.+|..+.++      +.+|+|++||++|+.|+
T Consensus       477 --~~~l~~~~~-~~l~~~~~P~~~~~v------~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        477 --EEEFFAFCE-QNMAKFKVPSYLEIR------KDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             --HHHHHHHHH-hhcccccCCcEEEEe------ccCCCCCccceehhhcC
Confidence              123334443 678999999999987      45699999999999864

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.6e-62  Score=599.11  Aligned_cols=538  Identities=17%  Similarity=0.132  Sum_probs=403.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCC---CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~---~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      ..++.++|+++|+++||++|+++.   ...   ....+++||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            368999999999999999999864   211   12346899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh---hhhhccccccc---cCccEEEEecCCcHHHHHHHh
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      +|||+++|++++|++|.++.+++.++|+.+++++++++....   ..+........   .....+...+.....      
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  385 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV------  385 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc------
Confidence            999999999999999999999999999999999999876421   11100000000   001111111100000      


Q ss_pred             hCCceeeeHHHHHhcCc--cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEE
Q 006115          192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (660)
                       .........+......  ..........++++++|+|||||||.||||+++|+++++.+.++...+     ++..+|++
T Consensus       386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       386 -GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             -ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence             0000000000000000  001111234678999999999999999999999999999988877666     78899999


Q ss_pred             EEecChhhHHHHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006115          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (660)
Q Consensus       270 l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (660)
                      +...|++|..++..++.+++.|+++++.+.    ++..+++.++++++|+++++|++++.|.....              
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------  525 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------  525 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence            999999999888888999999999998764    67899999999999999999999987753110              


Q ss_pred             HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCce
Q 006115          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT  424 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~  424 (660)
                                                        ...++||.+++||+++++...+.+.+.. +++++|.||+||++..+
T Consensus       526 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 ----------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             ----------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                              0014899999999999999998887765 78999999999998766


Q ss_pred             ecccCCC----------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc---
Q 006115          425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---  491 (660)
Q Consensus       425 ~~~~~~~----------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~---  491 (660)
                      +......          .....++|.|+++++++|+| +++...+++.|+.|||+|+|++++.||+++++.|.+.|.   
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~  650 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW  650 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence            6433211          01235789999999999999 666556777889999999999999999999999998872   


Q ss_pred             --------------------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceE
Q 006115          492 --------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (660)
Q Consensus       492 --------------------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~  545 (660)
                                                ++||+|||+|++++||.|+++||.||+||+ +|++|+|.+||.+|.+||.|.++
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a  729 (1389)
T TIGR03443       651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVREN  729 (1389)
T ss_pred             ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchhee
Confidence                                      479999999999999999999999999997 89999999999999999999999


Q ss_pred             EEEecCCC---CeEEEEEEcChhhH--HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecC
Q 006115          546 WVYGDSLK---SMLVAVVVPCEEDT--KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR  620 (660)
Q Consensus       546 ~v~~~~~~---~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~  620 (660)
                      +|++.+++   ..++|++++..+..  ..+........+-...+...+......+.|+++++ .+||.|++|..++++  
T Consensus       730 ~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~--  806 (1389)
T TIGR03443       730 VTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPL--  806 (1389)
T ss_pred             EEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEc--
Confidence            99875543   47999998763210  00000000000000000001112223456666665 789999999998887  


Q ss_pred             CCCCCCCccccccccchHHHHHHHHHHHHH
Q 006115          621 PFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       621 ~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~  650 (660)
                          +.+|+|++||++|++|+..+..+++.
T Consensus       807 ----~~lP~t~~GKidr~~L~~~~~~~~~~  832 (1389)
T TIGR03443       807 ----KKLPLNPNGKVDKPALPFPDTAQLAA  832 (1389)
T ss_pred             ----ccCCCCCCccccHhhcCCCchhhhhh
Confidence                45699999999999997655554443

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1e-61  Score=539.78  Aligned_cols=522  Identities=21%  Similarity=0.246  Sum_probs=389.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .|+.++|..+++++||++|+.+.   +      .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999999864   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcccccccc-----CccEEEEecCCcHHHHHHHhhCCce
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-----RLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      +++|++++|++|.++.+++.++|+.++++++|+++.....+..... ...     ....++.++.....     ......
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  158 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLH-LLSSEDSNLNLPVIFIHEIDFP-----KRPSSE  158 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHh-hccccccccCceEEEecccccc-----cCCccc
Confidence            9999999999999999999999999999999998876554432211 111     01123333321100     000011


Q ss_pred             eeeHHHHHhcCccCCcc----CCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEe
Q 006115          197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (660)
                      ..++.++..........    .....++++++|+|||||||.||+|+++|.++...........     .+...++++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            23455554433211111    1234578999999999999999999999998755443322222     45677889999


Q ss_pred             cChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       273 ~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      +|++|..++...+.++..|+++++++. ++..+++.|+++++|+++++|+++..|.+......                 
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  296 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------  296 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------
Confidence            999999998777777888888888775 88899999999999999999999998865311000                 


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006115          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                                          .        ..++++.+++||+++++.+.+++++ +|+++++.||+||+++.+..+....
T Consensus       297 --------------------~--------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 --------------------S--------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             --------------------C--------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence                                0        0026788999999999999998876 6999999999999986543321100


Q ss_pred             -------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccC
Q 006115          432 -------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (660)
Q Consensus       432 -------------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TG  498 (660)
                                   ....+..+.++++  +.+++.+.+...+.+.++.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG  425 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG  425 (579)
T ss_pred             ccccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence                         0011233334444  4445522233333333468999999999999999999999999999999999


Q ss_pred             ceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCC
Q 006115          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  575 (660)
Q Consensus       499 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~  575 (660)
                      |+|++|++|++++.||.+|+|+. +|++|+|.+||++|.+||.|.+|+|++.+++   ..++|+|++.++....      
T Consensus       426 Dlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~------  498 (579)
T PLN03102        426 DVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK------  498 (579)
T ss_pred             ceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc------
Confidence            99999999999999999999996 8999999999999999999999999998765   4788998887643110      


Q ss_pred             CCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHh
Q 006115          576 HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYE  653 (660)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~l~~~y~  653 (660)
                       +..+.+      ... -..+++++++ ..||.|++|..++++      +.+|+|++||++|++|++++.+ ..+.-|.
T Consensus       499 -~~~~~~------~~~-~~~~l~~~~~-~~L~~~~~P~~i~~~------~~~P~t~~gKi~r~~L~~~~~~~~~~~~~~  562 (579)
T PLN03102        499 -EDRVDK------LVT-RERDLIEYCR-ENLPHFMCPRKVVFL------QELPKNGNGKILKPKLRDIAKGLVVEDEDN  562 (579)
T ss_pred             -cccccc------ccc-cHHHHHHHHH-hhcccccCCeEEEEc------ccCCCCCcccccHHHHHHHHHHhhhHHHHH
Confidence             000000      000 0134445554 679999999999987      4469999999999999999866 3444444

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-61  Score=533.27  Aligned_cols=506  Identities=25%  Similarity=0.312  Sum_probs=409.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      .+++.++|.++++++||++|+.+.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a   80 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA   80 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999875   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.+++++++++.+....+.+..... . ...+........      .........+
T Consensus        81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~------~~~~~~~~~~  152 (523)
T PRK08316         81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALL-P-VDTLILSLVLGG------REAPGGWLDF  152 (523)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhc-C-ccceeeeecccc------cccccchhhH
Confidence            9999999999999999999999999999999999988766553322111 1 111111100000      0011123344


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .++..... ..........+++++++|||||||.||+|.+||.+++..+......+     ++..+++++..+|++|..+
T Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        153 ADWAEAGS-VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHhcCC-CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            44443322 11233445788999999999999999999999999998877766655     7889999999999999999


Q ss_pred             HHHH-HHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          281 RVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +... ..++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....                          
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  280 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF--------------------------  280 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc--------------------------
Confidence            8764 456889999999865 999999999999999999999999887642110                          


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-ccccC
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~  436 (660)
                                 ...++        +++|.+++||+.++.++.+.+++.+ ++++++.||+||++.+++...... ....+
T Consensus       281 -----------~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (523)
T PRK08316        281 -----------DTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG  341 (523)
T ss_pred             -----------ccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence                       01111        3899999999999999999999987 789999999999998776654432 23347


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006115          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|+++++|.+++.||.+
T Consensus       342 ~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~  418 (523)
T PRK08316        342 SAGRPVLNVETRVVD-DDGN--DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKK  418 (523)
T ss_pred             CcccCCCCcEEEEEc-CCCC--CCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccc
Confidence            899999999999998 5554  4555789999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006115          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+|++ +|.+|+|.+||+.|.++|+|.+++|++.+++.   .++++++++++..        .        .    .   
T Consensus       419 ~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~----~---  474 (523)
T PRK08316        419 DMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT--------V--------T----E---  474 (523)
T ss_pred             cEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCC--------C--------C----H---
Confidence            99996 89999999999999999999999999976553   6888888875420        0        0    1   


Q ss_pred             HHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006115          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~  649 (660)
                       +.+.+++ +..|+.|++|..+++++      .+|+|++||++|++|+++|.+.++
T Consensus       475 -~~l~~~~-~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        475 -DELIAHC-RARLAGFKVPKRVIFVD------ELPRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             -HHHHHHH-HHhcccCCCCcEEEEec------CCCCCCccceeHHHHHHHHHhhcc
Confidence             1233333 35789999999999884      459999999999999999987664

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3.2e-61  Score=532.80  Aligned_cols=499  Identities=21%  Similarity=0.230  Sum_probs=397.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.+.|.++++.+|+++|+++.   +...+.++.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999864   222234578999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcee
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +++|++++|++|..+.+++.++++.++++++++++....    ...............++..+....             
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD-------------  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC-------------
Confidence            999999999999999999999999999999999875421    111111112233344555443211             


Q ss_pred             eeHHHHHhcCccCC-------ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEE
Q 006115          198 YSWDEFLHLGKVNE-------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (660)
Q Consensus       198 ~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (660)
                      ..+..++.......       .......++++++++|||||||.||+|+++|+++...+......+     ++..+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            12333322111000       111234678999999999999999999999999999888776666     678899999


Q ss_pred             EecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006115          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +.+|++|..|+.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+........              
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  306 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------  306 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------
Confidence            9999999988765 6677999999988776 89999999999999999999999988764321110              


Q ss_pred             HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceeccc
Q 006115          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  428 (660)
                                                     ...+++|.+++||+++++.+.+.+.+.+++++++.||+||++.+.+...
T Consensus       307 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       307 -------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             -------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                           0014899999999999999999999888999999999999988766544


Q ss_pred             CCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC
Q 006115          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (660)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G  507 (660)
                      ... .....++|+|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.. ..+|||+|||+|++|++|
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g  431 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEG  431 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCC--CCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCC
Confidence            322 22235789999999999998 5544  455678999999999999999999887642 368999999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      .++++||.+|+|+. +|++|+|.+||++|.+||.|.+++|++.++.   ..+++++++..+.        ..        
T Consensus       432 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------  494 (538)
T TIGR03208       432 YIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGC--------TL--------  494 (538)
T ss_pred             cEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCC--------CC--------
Confidence            99999999999995 8999999999999999999999999997655   4688888876532        00        


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      +.        +.+.+++++..++.|++|..+++++      .+|+|++||++|++|+
T Consensus       495 ~~--------~~l~~~~~~~~l~~~~~P~~i~~v~------~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       495 DF--------AAMVAFLKAQKVALQYIPERLEVVD------ALPATPAGKIQKFRLR  537 (538)
T ss_pred             CH--------HHHHHHHHhcchhhccCCcEEEEec------cCCCCCccccchHhhc
Confidence            11        1233344334789999999999874      4599999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.4e-62  Score=546.73  Aligned_cols=514  Identities=18%  Similarity=0.158  Sum_probs=386.5

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++.++|+++++++||++|+++....+...+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~   96 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF   96 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence            3447899999999999999999987410011233457899999999999999999987 899999999999999999999


Q ss_pred             HHHHhCCCeEeec-CCCCC--hhhHHHHhhcccceEEEEccchhhhhhcccccccc--CccEEEEecCCcHHHHHHHhhC
Q 006115          119 EACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       119 lA~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      |||+++|++++|+ ++..+  .+++.++++.++++++|+++.....+..... ..+  ....++.++....         
T Consensus        97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------  166 (631)
T PRK07769         97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFR-ARPAKERPRVIAVDAVPD---------  166 (631)
T ss_pred             HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHh-hccccccceEEEcccccc---------
Confidence            9999999999999 55554  5789999999999999998876543322111 111  1112222221100         


Q ss_pred             CceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEec
Q 006115          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (660)
                               ..    ..........++++++|+|||||||.||+|++||+++...+......+     ++..++++++++
T Consensus       167 ---------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~  228 (631)
T PRK07769        167 ---------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSWL  228 (631)
T ss_pred             ---------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEeC
Confidence                     00    000111234678999999999999999999999999998877766555     678899999999


Q ss_pred             ChhhHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcC---eEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006115          274 PLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (660)
Q Consensus       274 p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (660)
                      |++|.+|+...+.+++.|+++++++.     ++..+++.+.++++   +++.++|+++..+......     +       
T Consensus       229 Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~-----~-------  296 (631)
T PRK07769        229 PFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL-----P-------  296 (631)
T ss_pred             CCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhcc-----c-------
Confidence            99999999877777888999888752     78889999999886   7899999988766432000     0       


Q ss_pred             HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CC---ceeeecCCCC
Q 006115          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTE  419 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~tE  419 (660)
                                          .......++        ++||.+++||+++++++.+.|.+.+   |+   .+++.||+||
T Consensus       297 --------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE  348 (631)
T PRK07769        297 --------------------KDGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAE  348 (631)
T ss_pred             --------------------hhcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence                                000001112        3899999999999999999998877   33   5999999999


Q ss_pred             CCCceecccCCCc--------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC
Q 006115          420 TCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (660)
Q Consensus       420 ~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~  473 (660)
                      ++..++.......                          ....++|+|+++.+++|+| ++++ .+++.|+.|||+|+||
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~~~ge~GEl~v~gp  426 (631)
T PRK07769        349 ATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SELPDGQIGEIWLHGN  426 (631)
T ss_pred             heeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCCCCCCEEEEEecCC
Confidence            8876554332110                          0124789999999999998 4433 3556778999999999


Q ss_pred             CcccccCCCchhhhhccc------------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHH
Q 006115          474 TLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV  535 (660)
Q Consensus       474 ~~~~gy~~~~~~~~~~f~------------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~  535 (660)
                      +++.|||++++.+.+.|.                  +|||+|||+|+++ +|+|+++||.||+||+ +|++|+|.|||++
T Consensus       427 ~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~  504 (631)
T PRK07769        427 NIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYT  504 (631)
T ss_pred             CccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHH
Confidence            999999999999998884                  3899999999995 9999999999999996 8999999999999


Q ss_pred             Hhc-CcCcce--EEEEecCC-------------------C---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006115          536 YCV-APIIED--IWVYGDSL-------------------K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       536 l~~-~p~V~~--~~v~~~~~-------------------~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+ ||.|.+  |+|++.++                   +   +.++++|++.++..       .        .+..++.
T Consensus       505 l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~-------~--------~~~~~l~  569 (631)
T PRK07769        505 AQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAH-------K--------LDPQPIA  569 (631)
T ss_pred             HHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccc-------c--------ccHHHHH
Confidence            986 899998  89998776                   1   36888888775420       0        0112233


Q ss_pred             HHHHHHHHHHHHHCCCCC-ce-eeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHh
Q 006115          591 NYILSELKNAAERNKLRG-FE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYE  653 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~-~~-~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~l~~~y~  653 (660)
                      +++.         +.|+. |+ .|+.+.+++.    +++|+|++|||+|++|++.|.+ .+..-|.
T Consensus       570 ~~~~---------~~l~~~~~~~p~~~~~v~~----~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~  622 (631)
T PRK07769        570 DDIR---------AAIAVRHGVTVRDVLLVPA----GSIPRTSSGKIARRACRAAYLDGSLRSGYG  622 (631)
T ss_pred             HHHH---------HHHHHHcCCCccEEEEECC----CccccCCCcHHHHHHHHHHHHcCCCccccC
Confidence            3333         33443 45 4778888752    3579999999999999998753 4444443

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-61  Score=533.33  Aligned_cols=504  Identities=25%  Similarity=0.275  Sum_probs=410.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ..-+++.+.+..+++++||++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~   84 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV   84 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34588999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++|+++..+.+.+..+++.+++++++++......+.. .....+....++..++...          ....
T Consensus        85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~  153 (542)
T PRK07786         85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVL  153 (542)
T ss_pred             HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------cccc
Confidence            9999999999999999999999999999999999999876554321 2222234444555443210          1123


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC-CCCcEEEEecChhh
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAH  277 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~  277 (660)
                      ++.++....... ........+++++++|||||||.||+|.++|+++...+......+     ++ ..++++++..|++|
T Consensus       154 ~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~  227 (542)
T PRK07786        154 GYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFH  227 (542)
T ss_pred             CHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHH
Confidence            455555433221 122345567899999999999999999999999998887765554     44 56899999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+|+..++.++..|+++++.+.   ++..+++.++++++|+++++|+++..++.......                    
T Consensus       228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--------------------  287 (542)
T PRK07786        228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP--------------------  287 (542)
T ss_pred             HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------------------
Confidence            9998778888999999998752   89999999999999999999999998865321100                    


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-c
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-M  432 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~  432 (660)
                                                ...++|.+++||+++++++.+.+++.+ +.++++.||+||++.+.+...... .
T Consensus       288 --------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~  341 (542)
T PRK07786        288 --------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAI  341 (542)
T ss_pred             --------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccc
Confidence                                      002799999999999999999999988 789999999999987765443322 2


Q ss_pred             cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEE
Q 006115          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       433 ~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      ...+++|.|++++.++|++ +++.  .++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.
T Consensus       342 ~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~  418 (542)
T PRK07786        342 RKLGSVGKVIPTVAARVVD-ENMN--DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVV  418 (542)
T ss_pred             ccCCCccccCCCceEEEEC-CCCC--CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEE
Confidence            3447899999999999998 6554  455678999999999999999999999999999999999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.+|+|++ +|.+|++.+||++|.+||.|.+|+|++.++.   ..+++++++..+..         .          . 
T Consensus       419 GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~----------~-  477 (542)
T PRK07786        419 DRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA---------A----------L-  477 (542)
T ss_pred             ecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC---------C----------C-
Confidence            999999996 8999999999999999999999999997654   36778887665320         0          0 


Q ss_pred             HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                         ..+++.+.++ ..++.|++|..++++      +.+|+|++||++|++|+++|.+..
T Consensus       478 ---~~~~l~~~l~-~~l~~~~~P~~i~~v------~~iP~t~~GKv~r~~L~~~~~~~~  526 (542)
T PRK07786        478 ---TLEDLAEFLT-DRLARYKHPKALEIV------DALPRNPAGKVLKTELRERYGACV  526 (542)
T ss_pred             ---CHHHHHHHHH-hhccCCCCCCEEEEe------ccCCCCCcccccHHHHHHHHHhhh
Confidence               0123344443 679999999999987      446999999999999999887754

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.9e-61  Score=531.77  Aligned_cols=494  Identities=19%  Similarity=0.180  Sum_probs=394.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++|+++|+++.    +     +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            457999999999999999999763    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++++++..+.+++.++++.+++++++++.....    .+........+....++........           
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  161 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE-----------  161 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc-----------
Confidence            9999999999999999999999999999999999875421    1111111112223333333221000           


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                       ......+... ..........++++++++|||||||.||+|.+||.++...+......+     .++.+|++++.+|++
T Consensus       162 -~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       162 -AELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             -chhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence             0011111111 111122345678999999999999999999999999998887766655     688899999999999


Q ss_pred             hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|+++++|+++..+.+......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9998864  5677899999988765 89999999999999999999999988765322110                   


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                        .        ..+++|.+++||+++++++.+.+.+.+|.++++.||+||++............
T Consensus       296 ------------------~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  349 (527)
T TIGR02275       296 ------------------Y--------DLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI  349 (527)
T ss_pred             ------------------C--------CccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence                              0        01389999999999999999999998999999999999976543322222222


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..+++|.|+ ++.++++++ +++.  +.+.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|++++
T Consensus       350 ~~~~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~  426 (527)
T TIGR02275       350 IFTTQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV  426 (527)
T ss_pred             ccccCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence            346789999 488999998 5554  44567899999999999999999999998888 789999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.++.   ..++++|+++++..                 +   
T Consensus       427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~-----------------~---  485 (527)
T TIGR02275       427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL-----------------K---  485 (527)
T ss_pred             Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC-----------------C---
Confidence            9999999995 8999999999999999999999999998765   36888888765320                 1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                           ..+|.++++...++.|++|..+.+++      .+|+|++||++|++|+
T Consensus       486 -----~~~l~~~l~~~~l~~~~~P~~i~~v~------~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       486 -----AAQLRRFLRERGLAEYKLPDRVEFID------SLPLTAVGKIDKKALR  527 (527)
T ss_pred             -----HHHHHHHHHhCCCccccCCCEEEEec------cCCCCCccceeHHhcC
Confidence                 12344555444699999999999984      4699999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=5.4e-61  Score=532.37  Aligned_cols=506  Identities=21%  Similarity=0.258  Sum_probs=404.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.++|+..++++||++|++..   ++     +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999864   43     47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh-----hhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      +++|++++|++|..+.+++.++++.++++++++++...     ..+.. ........+.++..+.....         ..
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~  164 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP-LQNQLPQLQQIVGVDKLAPA---------TS  164 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHH-HHhhCCCCcEEEEeCCcCCC---------cC
Confidence            99999999999999999999999999999999976321     11111 11223344455555432210         01


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      ..++.++....... ........+++++|+|||||||.||+|.+||.+++.....+...+     ++..++++++.+|++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            12344444332111 122235678999999999999999999999999988877765555     688999999999999


Q ss_pred             hHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |.+|+.. .+.+++.|+++++.+. ++..+++.++++++|+++++|+.+..++.......                    
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~--------------------  298 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP--------------------  298 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--------------------
Confidence            9999765 5667889999998876 89999999999999999998887766654321100                    


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-cc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~  433 (660)
                                               ..++++|.+++||+++++++.+.+.+. |+++++.||+||++.......... ..
T Consensus       299 -------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        299 -------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             -------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                                     011489999999999999999888764 999999999999988766544322 12


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEE
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      ...++|.|++++.++++| +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+++++++|.+++.
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~  429 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARK--TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT  429 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCC--CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence            235789999999999998 6554  44567899999999999999999999998888 6899999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.+|+|+. +|.+|+|.+||++|..+|+|.+++|++.+++   ..+++++++.....         ..      +    
T Consensus       430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------~~------~----  489 (547)
T PRK06087        430 GRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH---------SL------T----  489 (547)
T ss_pred             ecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC---------CC------C----
Confidence            999999995 8999999999999999999999999997655   36888888764210         00      0    


Q ss_pred             HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006115          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~  650 (660)
                          .+++.+++++..++.+++|..|.+++      ++|+|++||++|++|++++.+++.+
T Consensus       490 ----~~~~~~~~~~~~l~~~~~P~~i~~v~------~iP~t~sGK~~r~~l~~~~~~~~~~  540 (547)
T PRK06087        490 ----LEEVVAFFSRKRVAKYKYPEHIVVID------KLPRTASGKIQKFLLRKDIMRRLTQ  540 (547)
T ss_pred             ----HHHHHHHHHhccccccCCCeEEEEec------cCCCCCCCcCcHHHHHHHHHHHhhh
Confidence                12333333346899999999999984      4699999999999999998887654

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=5e-61  Score=532.00  Aligned_cols=517  Identities=22%  Similarity=0.253  Sum_probs=404.8

Q ss_pred             CceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCC
Q 006115           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC  102 (660)
Q Consensus        23 ~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd  102 (660)
                      .+||+......    .+...|+.+.|.++|+++|+++|+...   .+.    +.+||.||.+++.++|..|.+.|+++||
T Consensus        13 ~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~   81 (546)
T PLN02330         13 HIFRSRYPSVP----VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLRKGQ   81 (546)
T ss_pred             eeeccCCCCCC----CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            46666554432    234588999999999999999999753   211    5799999999999999999999999999


Q ss_pred             EEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006115          103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  182 (660)
Q Consensus       103 ~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  182 (660)
                      +|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+....      . .++.++..
T Consensus        82 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~-~~i~~~~~  154 (546)
T PLN02330         82 VVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------L-PVIVLGEE  154 (546)
T ss_pred             EEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------C-cEEEecCC
Confidence            9999999999999999999999999999999999999999999999999999988766553211      1 12232221


Q ss_pred             cHHHHHHHhhCCceeeeHHHHHhcCccC--CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccccc
Q 006115          183 TAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (660)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (660)
                      .          ......|.+++......  ........++++++++|||||||.||+|.++|.++...+.......   .
T Consensus       155 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~  221 (546)
T PLN02330        155 K----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV---G  221 (546)
T ss_pred             C----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---C
Confidence            1          01123456655433211  1112334578999999999999999999999999987665421111   1


Q ss_pred             CCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006115          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       261 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                      ......++.+.++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.....       
T Consensus       222 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------  294 (546)
T PLN02330        222 PEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI-------  294 (546)
T ss_pred             ccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc-------
Confidence            12234578999999999998864 5677889999888876 99999999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCC
Q 006115          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL  417 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~  417 (660)
                                                    ....++..      .++|.++++|+++++++.+++++.+ ++++++.||+
T Consensus       295 ------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~  338 (546)
T PLN02330        295 ------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGL  338 (546)
T ss_pred             ------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccc
Confidence                                          00011110      1589999999999999999999988 8999999999


Q ss_pred             CCCCCceecccCCC----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC
Q 006115          418 TETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  492 (660)
Q Consensus       418 tE~~~~~~~~~~~~----~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~  492 (660)
                      ||++.+........    .....++|.|++++++++++ ++++ .+++.|+.|||+|+|+.++.||+++++.+.+.+ .+
T Consensus       339 tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~  416 (546)
T PLN02330        339 TEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDED  416 (546)
T ss_pred             cccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhccCC
Confidence            99986654332111    12336899999999999998 4433 455677899999999999999999999988887 68


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006115          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      |||+|||+|+++++|.+++.||.+|+|++ +|++|+|.+||.+|.++|.|.+|+|++.++.   ..++++|++.++..  
T Consensus       417 g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~--  493 (546)
T PLN02330        417 GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK--  493 (546)
T ss_pred             CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC--
Confidence            99999999999999999999999999996 7999999999999999999999999997654   46888888775420  


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                              .      +.        +.|.++++ ..|+.|++|+.+.+++      .+|+|++||++|++|++++...
T Consensus       494 --------~------~~--------~~l~~~~~-~~l~~~~~p~~~~~v~------~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        494 --------E------SE--------EDILNFVA-ANVAHYKKVRVVQFVD------SIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             --------C------CH--------HHHHHHHH-HhcccccCceEEEEec------cCCCCCCcceeHHHHHHHHHhh
Confidence                    0      11        22333343 6799999999988874      4599999999999999988543

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-61  Score=532.35  Aligned_cols=502  Identities=23%  Similarity=0.285  Sum_probs=399.5

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++.++|...|+++||++|+.+.   +      +++||.||.+++.++|..|.+.|+++||+|+++++|++++++++
T Consensus         4 ~~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~   74 (528)
T PRK07470          4 RRVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESM   74 (528)
T ss_pred             ccCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence            44578999999999999999999864   2      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++++++..+.+++.++++.++++.++++......... ..........++.+.....            ..
T Consensus        75 lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~  141 (528)
T PRK07470         75 FAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAA-VRAASPDLTHVVAIGGARA------------GL  141 (528)
T ss_pred             HHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHH-HHhhCCcCceEEEeCCCcc------------cc
Confidence            9999999999999999999999999999999999999875443321 1111123334444432210            12


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      ++.++...............++++++|+|||||||.||+|+++|.++...+......+   ..+...+|+.+..+|++|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~  218 (528)
T PRK07470        142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHG  218 (528)
T ss_pred             cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhH
Confidence            4555544332222223345678999999999999999999999999876554422211   1145678999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      +++...+ .+..|+++++++.   ++..+++.++++++|++.++|++++.+.+....                       
T Consensus       219 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------  274 (528)
T PRK07470        219 AGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV-----------------------  274 (528)
T ss_pred             HHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-----------------------
Confidence            9986544 5667777766653   889999999999999999999999887542110                       


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC-----
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-----  430 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-----  430 (660)
                                    +..        ..+++|.+++||+++++...+.+.+.++.++++.||+||+++.+......     
T Consensus       275 --------------~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~  332 (528)
T PRK07470        275 --------------DRY--------DHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAE  332 (528)
T ss_pred             --------------CCC--------CCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccc
Confidence                          000        11489999999999999999999888899999999999998766544321     


Q ss_pred             --CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006115          431 --EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (660)
Q Consensus       431 --~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~  508 (660)
                        .....+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|+
T Consensus       333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~  409 (528)
T PRK07470        333 DGPDARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGF  409 (528)
T ss_pred             ccccceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCe
Confidence              122346889999999999998 6554  45567899999999999999999999999989999999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++.||.+|+|++ +|.+|+|.+||+.|.++|.|.+|+|++.+++.   .++++++..++..        .        +
T Consensus       410 l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------~  472 (528)
T PRK07470        410 LYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP--------V--------D  472 (528)
T ss_pred             EEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCC--------C--------C
Confidence            9999999999996 89999999999999999999999999987553   5777777765320        0        1


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .        +.+.++++ +.||.|.+|..++++      +.+|+|++||++|+.|++++++
T Consensus       473 ~--------~~~~~~l~-~~l~~~~~P~~~~~~------~~iP~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        473 E--------AELLAWLD-GKVARYKLPKRFFFW------DALPKSGYGKITKKMVREELEE  518 (528)
T ss_pred             H--------HHHHHHHH-HhhhcCCCCcEEEEe------ccCCCCCcccccHHHHHHHHHh
Confidence            1        22333343 678999999998887      4469999999999999998864

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.6e-61  Score=549.10  Aligned_cols=489  Identities=20%  Similarity=0.261  Sum_probs=378.9

Q ss_pred             CCcHHHHHHHHHHhCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..|+.+.|.++++++|+ ++|+...   +     ++++||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~l  273 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIF  273 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHH
Confidence            57899999999999998 5777531   1     25799999999999999999987 5999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhc-cccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+....... ........... +.+++....            .
T Consensus       274 A~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~------------~  340 (718)
T PRK08043        274 GASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKDD------------V  340 (718)
T ss_pred             HHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhhh------------c
Confidence            999999999999999999999999999999999998775442110 01111111222 222211000            0


Q ss_pred             eHHHH----HhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecC
Q 006115          199 SWDEF----LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       199 ~~~~~----~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (660)
                      .+...    .... ..........++++++++|||||||.||+|++||.++.+.+......+     +++.+|++++.+|
T Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        341 TTADKLWIFAHLL-MPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             chhHHHHHHHHHh-CCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            01000    0000 000111234678999999999999999999999999998887766555     7889999999999


Q ss_pred             hhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115          275 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       275 ~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      ++|.+|+.. ++.++..|+++++.+.  ++..+.+.+.++++|+++++|+++..+.+..                     
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------  473 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA---------------------  473 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence            999999865 6677999999998864  6678889999999999999999887654310                     


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006115          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                                        +..++        ++||.+++||+++++++.+.+++.+|+++++.||+||++..++...+..
T Consensus       474 ------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~  527 (718)
T PRK08043        474 ------------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA  527 (718)
T ss_pred             ------------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence                              00111        4899999999999999999999989999999999999987766543322


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCC--chh-------hhhc-ccCCccccCceE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN--PDL-------TRES-IIDGWFHTGDIG  501 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~--~~~-------~~~~-f~~g~~~TGDl~  501 (660)
                       ...+++|+|+|++++++++ +++      .++.|||+++|++++.||+++  ++.       +... +.+|||+|||+|
T Consensus       528 -~~~~svG~p~pg~~~~i~d-~~~------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg  599 (718)
T PRK08043        528 -AKPGTVGRILPGMDARLLS-VPG------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV  599 (718)
T ss_pred             -cCCCCCCCcCCCCeeEEec-CCC------CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence             2458999999999999998 332      235699999999999999983  332       2222 257999999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCC
Q 006115          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      ++|+||++++.||.+|+|++ +|++|+|.+||+++.+|+.+.+++|++.+++.   .+++++.... .            
T Consensus       600 ~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~-~------------  665 (718)
T PRK08043        600 RFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSE-L------------  665 (718)
T ss_pred             EEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcc-c------------
Confidence            99999999999999999996 79999999999999999988888888876553   5555543111 0            


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            +.        +.+.+++++..|+.|++|+.+.+++      .+|+|++||++|++|++++.+
T Consensus       666 ------~~--------~~l~~~~~~~~l~~~~vP~~i~~v~------~lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        666 ------TR--------EKLQQYAREHGVPELAVPRDIRYLK------QLPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             ------CH--------HHHHHHHHhcCCCcccCCceEEEec------ccCcCCCCCcCHHHHHHHHhc
Confidence                  11        2344555434599999999999984      459999999999999987754

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=2.1e-59  Score=543.51  Aligned_cols=566  Identities=19%  Similarity=0.297  Sum_probs=450.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +...|+.++|.+.++++|+++|+...   . ..++++++||+|+.+++.++|++|.+.|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34479999999999999999998642   1 1244678999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH-HHHHHHhhCCcee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-EQKEMAVQTGIKP  197 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~  197 (660)
                      +||+++|++++|+++.  .+++.++|+.++++++|++.+....+.+...   ..++.+++++.... .........+...
T Consensus       500 lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            9999999999999754  6789999999999999999887776654322   36788888864211 0000001113346


Q ss_pred             eeHHHHHhcCccCCc-cCCCCCCCCeEEEEe---cCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEec
Q 006115          198 YSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (660)
                      .+|+++...+..... ......++|++.|+|   ||||||.||||++||++++..+..+.....  ......+|++++++
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEec
Confidence            789999887632121 123347889999986   999999999999999999999887644210  01345789999999


Q ss_pred             ChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       274 p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |++|+++....+.+++.|+++...  ++..+++.|++++||+++++|.+|+++.+.+.+.....+++.+++++++++.+.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999977777789999998754  789999999999999999999999999998888888778889999999988777


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccC--CCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~--~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                      ...+.+   ....++++.+.|+++++.+|+++|.+++||.  +++..+..      ++++..+||+||..   +.+..+.
T Consensus       731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCC
Confidence            665554   3456689999999999999999999999973  45533332      56788899999943   3333333


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..   ..|.|+|+++++|.++++.+..    +..|||++++       +++++.|.+. .+||+         +||.|++
T Consensus       799 ~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~I  854 (1452)
T PTZ00297        799 FC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLRL  854 (1452)
T ss_pred             cc---cCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEEE
Confidence            32   2399999999999985554322    2369999964       4788888873 35664         6899999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHH-HHHHHCCCCC--------cHHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK-KWAYSNGHAG--------SFLE  582 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~~--------~~~~  582 (660)
                      +||++|+||+++|++|.|..||+.+.++|.|.+++|+|.+.+. ++|+|+++.+... +|+..++...        ...+
T Consensus       855 idRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~-lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~e  933 (1452)
T PTZ00297        855 LGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTE  933 (1452)
T ss_pred             EeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc-eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHH
Confidence            9999999999999999999999999999999999999987554 9999999999998 9998887631        3444


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 006115          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  656 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~~~  656 (660)
                      ++..  ..+.+.+.++...+.+.+..+++++.+.+++++|+++...+||+.|++|+.+.+.|+++|++||.+.+
T Consensus       934 l~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~~ 1005 (1452)
T PTZ00297        934 LVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVE 1005 (1452)
T ss_pred             HHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhcccc
Confidence            4421  22344444444444456888999999999999999999999999999999999999999999999654

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-60  Score=523.26  Aligned_cols=489  Identities=21%  Similarity=0.285  Sum_probs=395.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +.++.++|.++++++|+++|+.+.    +     +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            467899999999999999999864    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+.+.++++.+++++++++++.......        ....+.++.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence            99999999999999999999999999999999998765432210        0112222211100             01


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      ..+.. ............++++++++|||||||.||+|+++|.++...+......+     ++..+++++...|++|.++
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            11111 10111112234678999999999999999999999999987665544444     6788999999999999998


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++......                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-------------------------  259 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-------------------------  259 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------
Confidence            865 4667889999988776 9999999999999999999999998886431100                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC-CccccC
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG  436 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~  436 (660)
                                  ..++        +++|.+++||+++++.+.+.+.+.+ +.++++.||+||++..++....+ .....+
T Consensus       260 ------------~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  319 (497)
T PRK06145        260 ------------RFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG  319 (497)
T ss_pred             ------------cccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence                        0011        3899999999999999999998888 68899999999999876554332 223347


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006115          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|.|++++++++++ +++.  .++.++.|||+++|+.++.||+++++.+.+.|.++||+|||+|+++.+|.++++||.+
T Consensus       320 ~~G~~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~  396 (497)
T PRK06145        320 STGRALAHVEIRIAD-GAGR--WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK  396 (497)
T ss_pred             CcccCCCCceEEEEC-CCCC--CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence            899999999999998 6554  3456789999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006115          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+|++ +|.+++|.+||+.|.++|+|.+++|++.++.   +.+++++++.+..        ..        .        
T Consensus       397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~--------~--------  451 (497)
T PRK06145        397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA--------TL--------T--------  451 (497)
T ss_pred             ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC--------CC--------C--------
Confidence            99996 8999999999999999999999999997755   3688888876532        00        1        


Q ss_pred             HHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      .+.|.++++ ..|+.|++|..+.++      +.+|+|++||++|++|++++.
T Consensus       452 ~~~l~~~~~-~~l~~~~~p~~i~~v------~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        452 LEALDRHCR-QRLASFKVPRQLKVR------DELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHHHHHHH-HhhhcCCCCCEEEEe------ccCCCCCcccccHHHHHHHhc
Confidence            123344443 678999999998887      446999999999999998753

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2e-60  Score=522.97  Aligned_cols=496  Identities=24%  Similarity=0.317  Sum_probs=399.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      .++|.+.+..++ .+|+++|+...   ++     +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            367999999999 99999998764   33     5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+..... . .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAA-A-AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhh-c-cCCceEEEecCCCc-------------ccH
Confidence            99999999999999999999999999999999999876654432211 1 11122333332111             011


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .+..... ..........++++++++|||||||.||+|.++|+++...+......+     ++..+|++++.+|++|..|
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  211 (504)
T PRK07514        138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG  211 (504)
T ss_pred             HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence            1111111 111122345688999999999999999999999999999887766555     6788999999999999999


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +.. .+.+++.|+++++.+. ++..+++.+  .++|.+.++|.++..++....                           
T Consensus       212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------  262 (504)
T PRK07514        212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------  262 (504)
T ss_pred             HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence            875 5677999999998876 899999998  479999999999988764210                           


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCcc
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (660)
                                ....        ..+++|.+++||+++++++.+.+++.++.++++.||+||++......... .....++
T Consensus       263 ----------~~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~  323 (504)
T PRK07514        263 ----------LTRE--------AAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTV  323 (504)
T ss_pred             ----------CCcc--------cccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCccc
Confidence                      0000        11489999999999999999999998999999999999998765433222 2234789


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCC
Q 006115          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  517 (660)
Q Consensus       439 G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d  517 (660)
                      |.|+++++++++| ++++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+++++++|.+++.||.+|
T Consensus       324 G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~  401 (504)
T PRK07514        324 GFPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKD  401 (504)
T ss_pred             ccCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccc
Confidence            9999999999999 5544 456677899999999999999999999999999 589999999999999999999999999


Q ss_pred             eeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 006115          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (660)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (660)
                      +|++ +|.+|+|.+||+++.++++|.+++|++.+++   ..++++++..++..        .        +.        
T Consensus       402 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~--------  456 (504)
T PRK07514        402 LIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA--------L--------DE--------  456 (504)
T ss_pred             eEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC--------C--------CH--------
Confidence            9996 8999999999999999999999999997654   36888888775320        0        11        


Q ss_pred             HHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          595 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       595 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                      +.+.+.++ +.|+.+++|..+++++      .+|+|++||++|++|+++|++.+
T Consensus       457 ~~l~~~~~-~~l~~~~~p~~i~~v~------~~p~t~~gK~~r~~l~~~~~~~~  503 (504)
T PRK07514        457 AAILAALK-GRLARFKQPKRVFFVD------ELPRNTMGKVQKNLLREQYADLF  503 (504)
T ss_pred             HHHHHHHH-hhcccCCCCcEEEEec------cCCCCCCcceeHHHHHHHHHhhc
Confidence            22333343 6789999999999874      45999999999999998887653

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-60  Score=527.74  Aligned_cols=506  Identities=26%  Similarity=0.349  Sum_probs=402.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++|+++|+++.   +..    +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a   89 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFA   89 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            367999999999999999999875   322    5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh-----hhhccc------------cccccCccEEEEecCCc
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPD------------CRSAQRLRVMVCFTSLT  183 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~------------~~~~~~~~~i~~~~~~~  183 (660)
                      |+++|++++++++.++.+++..+++.++++++|+++....     .+....            ....+....++..+...
T Consensus        90 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (558)
T PRK12583         90 TARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP  169 (558)
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999999764321     110000            00111222333332211


Q ss_pred             HHHHHHHhhCCceeeeHHHHHhcCccC-----CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccc
Q 006115          184 AEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (660)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~  258 (660)
                      .          .....|+++.......     ........++++++++|||||||.||+|.++|+++.+.+......+  
T Consensus       170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--  237 (558)
T PRK12583        170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--  237 (558)
T ss_pred             C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh--
Confidence            1          1122344443322110     1112234578899999999999999999999999988887766665  


Q ss_pred             ccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHH
Q 006115          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (660)
Q Consensus       259 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~  335 (660)
                         ++..+|++++..|++|.+|... .+.++..|+++++...  ++..+++.++++++|+++++|+++..++.....   
T Consensus       238 ---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---  311 (558)
T PRK12583        238 ---GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR---  311 (558)
T ss_pred             ---CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---
Confidence               7888999999999999999876 5667889999887643  899999999999999999999998776532110   


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-Cceeee
Q 006115          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQG  414 (660)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~  414 (660)
                                                        ...++        +++|.+++||+++++++.+.+.+.++ ..+++.
T Consensus       312 ----------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~  349 (558)
T PRK12583        312 ----------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA  349 (558)
T ss_pred             ----------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceecc
Confidence                                              00111        38999999999999999999988885 579999


Q ss_pred             cCCCCCCCceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c
Q 006115          415 YGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (660)
Q Consensus       415 YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~  491 (660)
                      ||+||++.++..+....  .....++|.|++++.+++++ +++  .+++.|+.|||+++|+.++.||++++..+...| .
T Consensus       350 YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~  426 (558)
T PRK12583        350 YGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDE  426 (558)
T ss_pred             ccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCC
Confidence            99999998776554322  22347899999999999999 653  456677899999999999999999999998888 8


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||+.|.++|+|.+|+|++.++.   ..+++++++.++.  
T Consensus       427 ~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--  503 (558)
T PRK12583        427 DGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH--  503 (558)
T ss_pred             CCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCC--
Confidence            999999999999999999999999999996 8999999999999999999999999997654   4688888876532  


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                            ..        +        ..+|+.+++ ..||.|++|..+++++      .+|+|++||++|++|++++.+++
T Consensus       504 ------~~--------~--------~~~i~~~~~-~~L~~~~~P~~i~~v~------~lP~t~sGK~~r~~L~~~~~~~~  554 (558)
T PRK12583        504 ------AA--------S--------EEELREFCK-ARIAHFKVPRYFRFVD------EFPMTVTGKVQKFRMREISIEEL  554 (558)
T ss_pred             ------CC--------C--------HHHHHHHHH-hhcccCcCCcEEEEec------cCCCCCCCCccHHHHHHHHHhhc
Confidence                  00        0        123444443 6899999999999874      46999999999999999876654

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=3e-60  Score=528.21  Aligned_cols=509  Identities=26%  Similarity=0.343  Sum_probs=403.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....+|.++|.+.++++||++|+++.   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34468999999999999999999875   332    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh-----hhhcccc------------ccccCccEEEEecC
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDC------------RSAQRLRVMVCFTS  181 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~i~~~~~  181 (660)
                      |||+++|++++|++|..+.+++..+++.++++++++++....     .+.....            ...+....++..+.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999999875321     1100000            00112223333332


Q ss_pred             CcHHHHHHHhhCCceeeeHHHHHhcCccC-----CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccc
Q 006115          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (660)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~  256 (660)
                      ..          ......+.++.......     ........++++++++|||||||.||+|.++|.++...+..+...+
T Consensus       166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            11          01123444444322110     1112234678899999999999999999999999998888776666


Q ss_pred             ccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH
Q 006115          257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (660)
Q Consensus       257 ~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~  333 (660)
                           ++..+|+++..+|++|.+|+.. ++.++..|+++++...  ++..+++.++++++|+++++|+++..++..... 
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~-  309 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF-  309 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-
Confidence                 7889999999999999999875 5677899999885543  899999999999999999999999876542110 


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-ee
Q 006115          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LV  412 (660)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~-v~  412 (660)
                                                          +..++        ++||.++++|+++++.+.+.+.+.++.. ++
T Consensus       310 ------------------------------------~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~  345 (559)
T PRK08315        310 ------------------------------------ARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT  345 (559)
T ss_pred             ------------------------------------CCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence                                                00111        3899999999999999999998888654 99


Q ss_pred             eecCCCCCCCceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc
Q 006115          413 QGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (660)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f  490 (660)
                      +.||+||++.+++......  .....++|.|+++++++++| ++++ .+++.|+.|||+|+|+.++.||+++++.+...|
T Consensus       346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~  423 (559)
T PRK08315        346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-ETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAI  423 (559)
T ss_pred             EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccC-CcCCCCCceEEEEECchhhhhhcCChhHHhhcC
Confidence            9999999988766544332  22347899999999999999 5523 345677899999999999999999999998888


Q ss_pred             -cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhh
Q 006115          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED  566 (660)
Q Consensus       491 -~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~  566 (660)
                       .++||+|||+++++++|.++++||.+|+|++ +|.+|++.+||++|.++|+|.+++|++.+++   ..++++|++..+.
T Consensus       424 ~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  502 (559)
T PRK08315        424 DADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA  502 (559)
T ss_pred             CCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCC
Confidence             7899999999999999999999999999996 8999999999999999999999999997755   3678888876532


Q ss_pred             HHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          567 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .        .        +        .+.+.+++ +..||.|++|..++++      +.+|+|++||++|.+|++++..
T Consensus       503 ~--------~--------~--------~~~l~~~l-~~~l~~~~~P~~i~~v------~~lP~t~~GK~~r~~L~~~~~~  551 (559)
T PRK08315        503 T--------L--------T--------EEDVRDFC-RGKIAHYKIPRYIRFV------DEFPMTVTGKIQKFKMREMMIE  551 (559)
T ss_pred             C--------C--------C--------HHHHHHHH-HhhcccccCCcEEEEc------ccCCCCCCCceeHHHHHHHHHh
Confidence            0        0        1        11233333 3679999999999987      4569999999999999988766


Q ss_pred             HH
Q 006115          647 EI  648 (660)
Q Consensus       647 ~l  648 (660)
                      .+
T Consensus       552 ~~  553 (559)
T PRK08315        552 EL  553 (559)
T ss_pred             hh
Confidence            44

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-60  Score=523.96  Aligned_cols=495  Identities=23%  Similarity=0.249  Sum_probs=401.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..|+.++|.++++++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999864   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccch-hhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      |+++|++++|++|..+.+.+..+++.++++.+++++.. ...... ..........++.+.....               
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------  145 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPD---------------  145 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccc---------------
Confidence            99999999999999999999999999999999998763 222211 1122233344444443221               


Q ss_pred             HHHHHhcCc--cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhh
Q 006115          200 WDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (660)
                      ..++.....  ..........++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~  220 (524)
T PRK06188        146 GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSH  220 (524)
T ss_pred             hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchh
Confidence            011111100  011111223456699999999999999999999999999888777666     7889999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      .+++. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....                       
T Consensus       221 ~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-----------------------  276 (524)
T PRK06188        221 AGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-----------------------  276 (524)
T ss_pred             hhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-----------------------
Confidence            88864 4667889999999887 8999999999999999999999998886531100                       


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-----  431 (660)
                                    ..+        ++++|.+++||++++++....+.+.++..+++.||+||++..++......     
T Consensus       277 --------------~~~--------l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  334 (524)
T PRK06188        277 --------------TRD--------LSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDD  334 (524)
T ss_pred             --------------CCC--------CcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccc
Confidence                          001        14899999999999999888888888999999999999977665543322     


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      .....++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||++++..+...|.+|||+|||+++++++|.+++
T Consensus       335 ~~~~~~~G~p~~g~~v~i~~-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~  411 (524)
T PRK06188        335 PKRLTSCGRPTPGLRVALLD-EDGR--EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYI  411 (524)
T ss_pred             cccCCccccccCCcEEEEEc-CCCC--CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEE
Confidence            22346899999999999998 5544  45567899999999999999999999999999999999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++   ..++++++++++..          .      .   
T Consensus       412 ~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~---  471 (524)
T PRK06188        412 VDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----------V------D---  471 (524)
T ss_pred             Eeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC----------C------C---
Confidence            9999999996 8999999999999999999999999997654   37888888775420          0      1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           .++|.++++ ..++.|++|..+++++      .+|+|++||++|++|+++|.+
T Consensus       472 -----~~~l~~~~~-~~l~~~~~p~~i~~v~------~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        472 -----AAELQAHVK-ERKGSVHAPKQVDFVD------SLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             -----HHHHHHHHH-HhcccCCCCcEEEEec------CCCCCccccccHHHHHHHHHh
Confidence                 123334443 6788999999999984      469999999999999999854

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=4.2e-60  Score=523.17  Aligned_cols=499  Identities=19%  Similarity=0.199  Sum_probs=397.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++|+  ||++|+++.    +     +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG----E-----RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            3579999999887  999999864    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh----hhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++++.+.....++..+++.+++++++++....    ..+...+....+....++.....             .
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence            999999888777777778899999999999999986531    11111122222333344333221             0


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      ...+.++..... .........++++++++|||||||.||+|++||+++...+......+     ++..++++++.+|++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPA-EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCcc-cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            112333333321 11122345678999999999999999999999999999888766665     788899999999999


Q ss_pred             hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++........                 
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-----------------  296 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR-----------------  296 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence            9888764  5677899999988765 8889999999999999999999999887643211000                 


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                                ...+++|.+++||+++++.+.+.+.+.+|+++++.||+||++............
T Consensus       297 --------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  350 (536)
T PRK10946        297 --------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER  350 (536)
T ss_pred             --------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence                                      001489999999999999999999988999999999999976544332222223


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ...++|.|+ +++.++++| +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|++|++|.+++
T Consensus       351 ~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~  427 (536)
T PRK10946        351 IFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV  427 (536)
T ss_pred             ccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence            347899998 789999998 5553  45577999999999999999999999999988 689999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|++++|.+||+.|.+||+|.+++|++.++.   ..+++++++.+..                  +.. 
T Consensus       428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~~~-  487 (536)
T PRK10946        428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------------------KAV-  487 (536)
T ss_pred             eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------------------CHH-
Confidence            9999999996 8999999999999999999999999998765   3678888876432                  112 


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                             ++.+.+++..++.|++|..+.+++      .+|+|++||++|++|++++.+..
T Consensus       488 -------~l~~~~~~~~l~~~~~P~~~~~~~------~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        488 -------QLRRFLREQGIAEFKLPDRVECVD------SLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             -------HHHHHHHhCCccccccCcEEEEec------cCCCCCCCcccHHHHHHHHHhhc
Confidence                   333444334599999999999984      45999999999999998876643

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.7e-60  Score=532.20  Aligned_cols=501  Identities=18%  Similarity=0.220  Sum_probs=376.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      ..|+.++++++++++|+++|+++.   +.   ..+.++.+||.||.++++++|++|.+. +++||+|+++++|+++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~  108 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAG  108 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHH
Confidence            368999999999999999999875   32   123456899999999999999999986 99999999999999999999


Q ss_pred             HHHHHhCCCeEeec-CCCCC--hhhHHHHhhcccceEEEEccchhhhhhcccccccc--CccEEEEecCCcHHHHHHHhh
Q 006115          118 MEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAVQ  192 (660)
Q Consensus       118 ~lA~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~  192 (660)
                      +|||+++|++++|+ ++.++  .+++.++|+.++++++|+++.....+..... ...  ....++.++....        
T Consensus       109 ~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~--------  179 (612)
T PRK12476        109 FFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLR-NLPRLRRPRVIAIDAIPD--------  179 (612)
T ss_pred             HHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHh-hcccccCceEEEeccccc--------
Confidence            99999999999999 57776  7899999999999999998876554322111 111  1122333322110        


Q ss_pred             CCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCC-CCCCcEEEE
Q 006115          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLS  271 (660)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~  271 (660)
                                   .. ..........++++++|+|||||||.||||+++|+++.+.+......+     + +.+++++++
T Consensus       180 -------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~  240 (612)
T PRK12476        180 -------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVS  240 (612)
T ss_pred             -------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEE
Confidence                         00 001111234678999999999999999999999999987766654444     5 678899999


Q ss_pred             ecChhhHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHhh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006115          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      ++|++|.+|+...+.++..|++++++..     ++..+++.++  ++++++++++|+++..++......           
T Consensus       241 ~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~-----------  309 (612)
T PRK12476        241 WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP-----------  309 (612)
T ss_pred             eCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh-----------
Confidence            9999999998776666555656555532     7889999995  589999999999888775421000           


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CC---ceeeecCCC
Q 006115          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLT  418 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~t  418 (660)
                                            ......++        +++| +++||+++++++.+.+.+.+   |+   .+++.||+|
T Consensus       310 ----------------------~~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~T  358 (612)
T PRK12476        310 ----------------------AEGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIA  358 (612)
T ss_pred             ----------------------hhhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchh
Confidence                                  00001112        3889 99999999999999998877   44   489999999


Q ss_pred             CCCCceecccCCCc--------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc
Q 006115          419 ETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (660)
Q Consensus       419 E~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g  472 (660)
                      |++..++.......                          ...+++|+|+++++++|+| ++++ .+++.|+.|||+++|
T Consensus       359 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g-~~~~~g~~GEl~v~g  436 (612)
T PRK12476        359 EATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTG-AELPDGEVGEIWLHG  436 (612)
T ss_pred             hhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCC-cCCCCCCEEEEEEcC
Confidence            98765443221100                          0124789999999999999 6522 345567899999999


Q ss_pred             CCcccccCCCchhhhhccc-------------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHH
Q 006115          473 KTLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE  533 (660)
Q Consensus       473 ~~~~~gy~~~~~~~~~~f~-------------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE  533 (660)
                      ++++.||+++++.+.+.|.                   ++||+|||+|+++ ||+|+++||++|+|++ +|++|+|.+||
T Consensus       437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE  514 (612)
T PRK12476        437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIE  514 (612)
T ss_pred             CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHH
Confidence            9999999999999988883                   2599999999985 9999999999999997 89999999999


Q ss_pred             HHHh-cCcCcce--EEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCC
Q 006115          534 NVYC-VAPIIED--IWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRG  608 (660)
Q Consensus       534 ~~l~-~~p~V~~--~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  608 (660)
                      ++|. .||.|.+  ++|++.++.  +.+++++++.++...               .+.+++.+++.+.+..        .
T Consensus       515 ~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~l~~~~~~~l~~--------~  571 (612)
T PRK12476        515 ATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSR---------------ADPAPAIDAIRAAVSR--------R  571 (612)
T ss_pred             HHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCccc---------------ccHHHHHHHHHHHHHH--------h
Confidence            9997 4899999  677776654  478888887654200               0112233333333321        2


Q ss_pred             cee-eeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          609 FEH-IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       609 ~~~-p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      |++ |+.+.+++.    +.+|+|++||++|++|+++|..
T Consensus       572 ~~~~p~~v~~v~~----~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        572 HGLAVADVRLVPA----GAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             hCCcceEEEEECC----CCcCcCCchHHHHHHHHHHHHc
Confidence            455 577888752    3469999999999999998754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.9e-60  Score=571.80  Aligned_cols=507  Identities=23%  Similarity=0.237  Sum_probs=402.5

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      +...+++.+.+.++++++||++|++..   ++     +++||+||.++++++|+.|.+ ++++||+|+++++|+++++++
T Consensus       611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~  681 (1146)
T PRK08633        611 KEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALA  681 (1146)
T ss_pred             cCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHH
Confidence            455688999999999999999999753   23     479999999999999999987 489999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcccc-ccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++||+++|++++|++|..+.+++.+++++++++++++++.....+..... ........++..++.....        ..
T Consensus       682 ~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  753 (1146)
T PRK08633        682 NLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------SK  753 (1146)
T ss_pred             HHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------ch
Confidence            99999999999999999999999999999999999999876665532110 0112222333333211100        00


Q ss_pred             eeeHHHHHhcCc-cC----CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEE
Q 006115          197 PYSWDEFLHLGK-VN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (660)
Q Consensus       197 ~~~~~~~~~~~~-~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (660)
                      ...+.+...... +.    ........++++++++|||||||.||+|.+||+++...+......+     ++.++|++++
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~  828 (1146)
T PRK08633        754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILS  828 (1146)
T ss_pred             hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            001111111100 00    0001345689999999999999999999999999999888776666     6788999999


Q ss_pred             ecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006115          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       272 ~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      .+|++|.+|+.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+....                
T Consensus       829 ~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------  892 (1146)
T PRK08633        829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL----------------  892 (1146)
T ss_pred             cCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------
Confidence            999999999876 6778999999988764  889999999999999999999999887642110                


Q ss_pred             HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceeccc
Q 006115          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  428 (660)
                                           +..+        .+++|.+++||+++++++.+.+++.+|+++++.||+||++.+++...
T Consensus       893 ---------------------~~~~--------~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~  943 (1146)
T PRK08633        893 ---------------------HPLM--------FASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL  943 (1146)
T ss_pred             ---------------------Cccc--------CCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEec
Confidence                                 0011        14899999999999999999999999999999999999988766543


Q ss_pred             CCC---------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC----Ccc
Q 006115          429 PDE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWF  495 (660)
Q Consensus       429 ~~~---------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~----g~~  495 (660)
                      .+.         ....+++|+|+|+++++++| ++++ .+++.|+.|||+++|+.++.||+++++.+.+.|.+    |||
T Consensus       944 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633        944 PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred             CcccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence            221         12347899999999999999 5443 45567889999999999999999999999998877    999


Q ss_pred             ccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCc--CcceEEEEecCCCC---eEEEEEEcChhhHHHH
Q 006115          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDIWVYGDSLKS---MLVAVVVPCEEDTKKW  570 (660)
Q Consensus       496 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~  570 (660)
                      +|||+|++|+||.+++.||.||+|++ +|++|+|.+||++|.+||  .+.+|+|++.+++.   .++++++....     
T Consensus      1022 ~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~----- 1095 (1146)
T PRK08633       1022 VTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE----- 1095 (1146)
T ss_pred             ECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc-----
Confidence            99999999999999999999999996 899999999999999999  56689999877653   67777775321     


Q ss_pred             HHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                                    +.        +++.++++++.+|.|++|..+++++      ++|+|++||++|++|+++.++.
T Consensus      1096 --------------~~--------~~l~~~~~~~~l~~~~~P~~i~~~~------~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1096 --------------DV--------EELKRAIKESGLPNLWKPSRYFKVE------ALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             --------------CH--------HHHHHHHHhcCCCcccCCcEEEEec------CcCCCCCCCCcHHHHHHHHHHh
Confidence                          11        1233333346799999999998874      4699999999999999876554

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=5.5e-60  Score=521.11  Aligned_cols=497  Identities=23%  Similarity=0.252  Sum_probs=400.7

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHH
Q 006115           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~  122 (660)
                      ++.++|..+++++|+++|+.+.   +      +++||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4788999999999999999864   3      479999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHH
Q 006115          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|+++..+.+++..+++.+++++++++......+..... .......++.+++....     .........|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP-GCHDLRTLILVGEPAHA-----SEGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhh-cccccceEEEecCcccc-----cCCccccccHHH
Confidence            999999999999999999999999999999998876654433222 12333444444432210     000122335665


Q ss_pred             HHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHH
Q 006115          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  282 (660)
                      +......  ........+++++++|||||||.||+|.+||.+++..+......+     .+..+|++++.+|++|.+|+.
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            5443211  122234568899999999999999999999999998888776655     688899999999999999988


Q ss_pred             HHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCC
Q 006115          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (660)
Q Consensus       283 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (660)
                      ..+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+....                             
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  269 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-----------------------------  269 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence            88889999999998876 899999999999999999999999887542000                             


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCccCC
Q 006115          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                          .             ...+++|.++++|+++++++.+.+++.+ ++.+++.||+||++..............+++|.
T Consensus       270 ----~-------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       270 ----E-------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             ----C-------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence                0             0114899999999999999999999988 788999999999987554433222334578999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc------------CCccccCceEEECCCCc
Q 006115          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV  508 (660)
Q Consensus       441 ~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~------------~g~~~TGDl~~~~~~G~  508 (660)
                      |++++++++++ +++.  .++.++.|||+++|+.++.||+++++.+...|.            ++||+|||+|+++.+|.
T Consensus       333 ~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       333 AIPNAEVLVLR-EDGS--ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ecCCCEEEEEC-CCCC--CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            99999999998 5544  345678999999999999999999988876652            34899999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++.||.+|+|++ +|.+|+|.+||++|.+||.|.+|+|++.+++   +.++++++...+..        .        +
T Consensus       410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~--------~--------~  472 (515)
T TIGR03098       410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE--------L--------D  472 (515)
T ss_pred             EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC--------C--------C
Confidence            9999999999996 7999999999999999999999999997654   46777777544320        0        1


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      .        +.+.++++ ++|+.+++|..+++++      .+|+|++||++|++|++
T Consensus       473 ~--------~~l~~~l~-~~l~~~~~p~~i~~v~------~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 R--------AALLAECR-ARLPNYMVPALIHVRQ------ALPRNANGKIDRKALAA  514 (515)
T ss_pred             H--------HHHHHHHH-hhCccccCCCEEEEec------cCCCCCCCCCcHHHhcc
Confidence            1        22333333 6799999999999984      45999999999999874

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-59  Score=521.55  Aligned_cols=508  Identities=20%  Similarity=0.221  Sum_probs=395.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++|+++|+...    +     +++||.||.+++.++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la   79 (540)
T PRK06164          9 ADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLA   79 (540)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            358999999999999999999853    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh-----hhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      |+++|++++|+++..+.+++.++++.++++++|+++....     .+...........+.++.++......      ...
T Consensus        80 ~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  153 (540)
T PRK06164         80 CARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PAP  153 (540)
T ss_pred             HHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CCC
Confidence            9999999999999999999999999999999999876421     11111111122344444444111000      000


Q ss_pred             eeeeHHHHHhcCccCCc---cCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEe
Q 006115          196 KPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (660)
                      ....+.++.........   ......++++++++|||||||.||+|+++|.++...+..+...+     ++..+++++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~  228 (540)
T PRK06164        154 APGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLAA  228 (540)
T ss_pred             CcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEc
Confidence            00011111111100000   01223568899999999999999999999999999888777766     78899999999


Q ss_pred             cChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       273 ~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      +|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+... .                  
T Consensus       229 ~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~------------------  289 (540)
T PRK06164        229 LPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E------------------  289 (540)
T ss_pred             CCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c------------------
Confidence            999999999888888999999988876 89999999999999999999999998865410 0                  


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEcc-CCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006115          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G-~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                         .        ...++++.+.++| .+....+.+++.+. ++++++.||+||++.+++.....
T Consensus       290 -------------------~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~  341 (540)
T PRK06164        290 -------------------R--------ADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPAT  341 (540)
T ss_pred             -------------------c--------CCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCC
Confidence                               0        0113788876665 55566677777665 89999999999998876655432


Q ss_pred             C--ccccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCC
Q 006115          431 E--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (660)
Q Consensus       431 ~--~~~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~  506 (660)
                      .  .....+.|.++ +++.++++| ++++ .+++.|+.|||||+|++++.||+++++.+...| .+|||+|||+|+++++
T Consensus       342 ~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  419 (540)
T PRK06164        342 DPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGD  419 (540)
T ss_pred             CCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCC
Confidence            2  12224567665 799999998 4444 455678899999999999999999999999998 6899999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      |.+++.||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++.+..  ..+++++++.++..        .        
T Consensus       420 g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~--------~--------  482 (540)
T PRK06164        420 GQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGAS--------P--------  482 (540)
T ss_pred             ceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCC--------C--------
Confidence            999999999999997 7999999999999999999999999986533  47888888765420        0        


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCcccccc---ccchHHHHHHHHHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL---KKKRNKLLIYYQVEID  649 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~G---Kv~R~~l~~~~~~~l~  649 (660)
                      .        .+++.++++ ..||.|++|+.+.+++      .+|+|++|   |++|++|++++++.+.
T Consensus       483 ~--------~~~l~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~g~~~Ki~r~~L~~~~~~~~~  535 (540)
T PRK06164        483 D--------EAGLMAACR-EALAGFKVPARVQVVE------AFPVTESANGAKIQKHRLREMAQARLA  535 (540)
T ss_pred             C--------HHHHHHHHH-hhcccCcCCcEEEEec------CCCCCCCCccccccHHHHHHHHHHhhh
Confidence            1        123344443 6799999999998874      46999999   9999999998776544

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.8e-60  Score=524.42  Aligned_cols=484  Identities=18%  Similarity=0.186  Sum_probs=362.2

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      |-+.+.|+.+++++|+++|++..     +++.++++||+||.++++++|++|.+.  ++||+|+++++|++++++++|||
T Consensus         2 ~~~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~   74 (525)
T PRK05851          2 NELAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA   74 (525)
T ss_pred             chHHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence            34889999999999999999754     334578999999999999999999987  89999999999999999999999


Q ss_pred             HhCCCeEeecCCC--------CChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006115          122 NALSLICVPLYDT--------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       122 ~~~G~~~v~i~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++|++++ +++.        ...+.+..+++.++++++|++......+.....    .    +.+.+            
T Consensus        75 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------  133 (525)
T PRK05851         75 WLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------  133 (525)
T ss_pred             HHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc------------
Confidence            99999865 3332        123455667899999999998765543322110    0    00000            


Q ss_pred             CceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCC-CCcEEEEe
Q 006115          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSF  272 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~  272 (660)
                            +......  ..........++++++|+|||||||.||+|++||.++.+.+..+...+     ++. .+|+++++
T Consensus       134 ------~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~  200 (525)
T PRK05851        134 ------LATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSW  200 (525)
T ss_pred             ------ccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEc
Confidence                  0000000  000111234678999999999999999999999999999888776666     677 89999999


Q ss_pred             cChhhHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006115          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       273 ~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      +|++|.+|+..++.++..|+++++.+.     ++..+++.+.++++|++..+|.++..+.+... ..             
T Consensus       201 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~-~~-------------  266 (525)
T PRK05851        201 LPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYAR-RV-------------  266 (525)
T ss_pred             CCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhc-cc-------------
Confidence            999999999878888999999998762     57789999999999988655544444322110 00             


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh---cCC---ceeeecCCCCCC
Q 006115          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETC  421 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~tE~~  421 (660)
                                            ...++        ++||.+++||+++++++.++|.+.   +|.   .+++.||+||++
T Consensus       267 ----------------------~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~  316 (525)
T PRK05851        267 ----------------------SDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAEST  316 (525)
T ss_pred             ----------------------cCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhc
Confidence                                  00111        389999999999999999988764   354   499999999998


Q ss_pred             CceecccCCC--------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhh
Q 006115          422 GPTTVCFPDE--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR  487 (660)
Q Consensus       422 ~~~~~~~~~~--------------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~  487 (660)
                      ..++......              ....+++|+|++|++++|+| +++. .+++.|+.|||+++|++++.||+++++.+ 
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-  393 (525)
T PRK05851        317 CAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID-  393 (525)
T ss_pred             eEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC-
Confidence            7655432211              12236799999999999998 5543 34566789999999999999999988643 


Q ss_pred             hcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCh
Q 006115          488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCE  564 (660)
Q Consensus       488 ~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~  564 (660)
                         .+|||+|||+|+++ +|.++++||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++.   .+.++|+...
T Consensus       394 ---~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~  468 (525)
T PRK05851        394 ---PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEF  468 (525)
T ss_pred             ---CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEe
Confidence               37899999999997 8999999999999997 89999999999999999999999999875442   4555554331


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      ..         .        +.+++.+.+.+.+..+     +  +++|+.+++++.    +.+|+|++||++|++|++.+
T Consensus       469 ~~---------~--------~~~~~~~~~~~~l~~~-----l--~~~P~~~~~v~~----~~lP~t~~GKi~r~~L~~~~  520 (525)
T PRK05851        469 RG---------P--------DEAGARSEVVQRVASE-----C--GVVPSDVVFVAP----GSLPRTSSGKLRRLAVKRSL  520 (525)
T ss_pred             cC---------c--------chHHHHHHHHHHHHHH-----h--CCCccEEEEECC----CCcCcCcchHHHHHHHHHHH
Confidence            10         0        1122333333333221     1  278888998851    24699999999999999877


Q ss_pred             HH
Q 006115          645 QV  646 (660)
Q Consensus       645 ~~  646 (660)
                      +.
T Consensus       521 ~~  522 (525)
T PRK05851        521 EA  522 (525)
T ss_pred             Hh
Confidence            54

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-59  Score=519.82  Aligned_cols=507  Identities=22%  Similarity=0.253  Sum_probs=396.8

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.++|+++|+++||+++++..   .  .+..+++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            58999999999999999999853   1  123578999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|++|.++.+++.++++.+++++++++......+.+... .......++...+....    ..........+.
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  159 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHM----PQTTLKNAVAYE  159 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEecccccc----cccCccccccHH
Confidence            9999999999999999999999999999999999876655533222 22333444444322100    000001223455


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHH-HHh-hhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      ++...... ........++++++++|||||||.||+|.+||++.+ ... ......+     ++..+|+++...|++|.+
T Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~~  233 (542)
T PRK06018        160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHAN  233 (542)
T ss_pred             HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHHh
Confidence            55544321 222234567889999999999999999999999743 222 2222233     678899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115          280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      ++...+.++..|+++++...  ++..+++.++++++|++.++|+++..+++......                       
T Consensus       234 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------  290 (542)
T PRK06018        234 SWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----------------------  290 (542)
T ss_pred             hhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------
Confidence            88777778899999988653  78899999999999999999999998865422110                       


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC------
Q 006115          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------  431 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~------  431 (660)
                                    .+        .++||.++++|+++++++.+.|++ +++++++.||+||++.+++.+....      
T Consensus       291 --------------~~--------~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  347 (542)
T PRK06018        291 --------------LK--------LPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLP  347 (542)
T ss_pred             --------------CC--------cccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCC
Confidence                          00        138999999999999999999999 8999999999999998765442111      


Q ss_pred             ----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCC
Q 006115          432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (660)
Q Consensus       432 ----~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~  506 (660)
                          .....++|.|.++++++|++ +++...+.+.+..|||+++|+.++.||+++.   ...+ .+|||+|||+++++++
T Consensus       348 ~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~  423 (542)
T PRK06018        348 GDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAY  423 (542)
T ss_pred             chhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCC
Confidence                01125789999999999999 6666666554568999999999999999842   2233 6899999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006115          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |++++.||.+|+|+. +|.++++.+||..+.+||.|.+|+|++.++.   +.+.++|++.++..        .       
T Consensus       424 g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~-------  487 (542)
T PRK06018        424 GYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET--------A-------  487 (542)
T ss_pred             ccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC--------C-------
Confidence            999999999999995 8999999999999999999999999997755   36777777765420        0       


Q ss_pred             hccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       +.        +.+.++++ ..++.|.+|+.+.++      +.+|+|++||++|++|++++.+
T Consensus       488 -~~--------~~l~~~~~-~~l~~~~~P~~i~~v------~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        488 -TR--------EEILKYMD-GKIAKWWMPDDVAFV------DAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             -CH--------HHHHHHHH-hhCccccCCcEEEEe------ccCCCCCcchhhHHHHHHHHhc
Confidence             11        22334443 678999999999997      4469999999999999988765

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-59  Score=517.12  Aligned_cols=485  Identities=20%  Similarity=0.232  Sum_probs=382.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCChhhHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ...++.++|.++|.  +|++++++.    +     +++||.||.+++.++|.+|++. |+++|++|+++++|++++++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            34679999988875  788998764    3     5899999999999999999997 8999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++|+++.++.+++..+++.++++++|+++.....+....    ... .++.++.                .
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~  130 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P  130 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence            999999999999999999999999999999999999987665432211    111 1222221                1


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      .+.+++..............++++++++|||||||.||+|+++|.++......+...+     ++..+|+++..+|++|.
T Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~  205 (529)
T PRK07867        131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS  205 (529)
T ss_pred             cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence            2333333221111222345678999999999999999999999999988888776666     78889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+.+..++.....                        
T Consensus       206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~------------------------  261 (529)
T PRK07867        206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER------------------------  261 (529)
T ss_pred             HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc------------------------
Confidence            99876 4557889999988765 899999999999999999999998876542100                        


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccC
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (660)
                               ..            ...+++|. ++||+.+++.. ..+.+.+|+++++.||+||++..+.....   ...+
T Consensus       262 ---------~~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~  315 (529)
T PRK07867        262 ---------PD------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG  315 (529)
T ss_pred             ---------cc------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence                     00            00136774 56888887765 55666779999999999999876543321   2336


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCC------------CceEEE-ccCCcccccCCCchhhhhcccCCccccCceEEE
Q 006115          437 TAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (660)
Q Consensus       437 ~~G~~~~~~~v~iv~~~~~~~~~~~~g~------------~GEi~v-~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~  503 (660)
                      ++|.|+++  +++++ ++.+ .+++.++            .|||++ +|+.++.||+++++.+...|.+|||+|||++++
T Consensus       316 ~~g~~~~~--~~i~~-~~~~-~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~  391 (529)
T PRK07867        316 ALGPLPPG--VAIVD-PDTG-TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR  391 (529)
T ss_pred             CcCCCCCC--EEEEE-CCCC-CCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence            78999998  66777 3322 2334445            899999 999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      +++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.++..        .    
T Consensus       392 ~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~--------~----  458 (529)
T PRK07867        392 DADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAK--------F----  458 (529)
T ss_pred             eCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCC--------C----
Confidence            999999999999999997 8999999999999999999999999998765   37888888765420        0    


Q ss_pred             HHHhccHHHHHHHHHHHHHHHH-HCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          581 LELCSLVQLQNYILSELKNAAE-RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                          +..++        +++++ +..|+.|++|..+.++      +.+|+|++||++|++|+++...
T Consensus       459 ----~~~~l--------~~~~~~~~~l~~~~~P~~i~~~------~~iP~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        459 ----DPDAF--------AEFLAAQPDLGPKQWPSYVRVC------AELPRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             ----CHHHH--------HHHHHhhccCCcccCCeEEEEe------eccCCCCCcceeHHHHHHhcCC
Confidence                11222        22222 2469999999999987      4469999999999999987643

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-59  Score=522.89  Aligned_cols=511  Identities=23%  Similarity=0.307  Sum_probs=392.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..++.+.|.++++++|+++|+.+.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999998753    3     4799999999999999999985 99999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEec--CCcHHHHHH--------
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM--------  189 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~--------  189 (660)
                      ||+++|++++++++..+.+++.++++.++++++++++............  .....++...  +........        
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999987544333221111  0001111000  000000000        


Q ss_pred             -----HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccC---
Q 006115          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED---  261 (660)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~---  261 (660)
                           .........+|+++................+++++|+|||||||.||+|+++|+++...+..+...+.....   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                 000001123455554433222222234567899999999999999999999999998776655443321100   


Q ss_pred             -CCCC-CcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006115          262 -KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (660)
Q Consensus       262 -~~~~-~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (660)
                       .... .+++++.+|++|.+++.. ++..+..|.+.++...  ++..+++.++++++|+++++|+++..++....     
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----  326 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG-----  326 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence             0223 357789999999999865 4555778887766543  88999999999999999999999988764210     


Q ss_pred             hchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecC
Q 006115          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG  416 (660)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG  416 (660)
                                                      ....++        +++|.+++||+++++++.+.+.+.+++++++.||
T Consensus       327 --------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        327 --------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             --------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                            000111        3899999999999999999999888999999999


Q ss_pred             CCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcc
Q 006115          417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (660)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~  495 (660)
                      +||++.+++..........+++|.|+++++++|+| +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGN--ELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCC--CCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99999877655544333447899999999999999 6554  44567899999999999999999999999888 68999


Q ss_pred             ccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHH
Q 006115          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (660)
Q Consensus       496 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~  572 (660)
                      +|||+|+++++|.+++.||.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.++.   ..+++++++....      
T Consensus       444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------  516 (562)
T PRK12492        444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG------  516 (562)
T ss_pred             ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC------
Confidence            99999999999999999999999997 7999999999999999999999999997654   3677777765321      


Q ss_pred             HCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                         .        +        .+.+.++++ +.|+.|++|..+.+++      .+|+|++||++|++|+++
T Consensus       517 ---~--------~--------~~~i~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        517 ---L--------S--------VEELKAYCK-ENFTGYKVPKHIVLRD------SLPMTPVGKILRRELRDI  561 (562)
T ss_pred             ---C--------C--------HHHHHHHHH-HhcccccCCcEEEEec------cCCCCCCCceeHHHHHhh
Confidence               0        1        123334443 6789999999999874      459999999999999864

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-60  Score=618.61  Aligned_cols=482  Identities=19%  Similarity=0.230  Sum_probs=401.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.++|..+++++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus      3093 ~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~l 3163 (3956)
T PRK12467       3093 SERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALL 3163 (3956)
T ss_pred             ccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHH
Confidence            3478999999999999999999985   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++.++++.+++++++++......+...      ....++.++...                
T Consensus      3164 avl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~---------------- 3221 (3956)
T PRK12467       3164 AVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD---------------- 3221 (3956)
T ss_pred             HHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh----------------
Confidence            9999999999999999999999999999999999988765433111      011122222110                


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                           ........+.....++++++++|||||||.||||+++|+++.+.+......+     +++++|+++.+.|++|..
T Consensus      3222 -----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 3291 (3956)
T PRK12467       3222 -----LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDG 3291 (3956)
T ss_pred             -----hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhH
Confidence                 0011112223345789999999999999999999999999999999887777     889999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +...++.++..|+++++.+.   ++..+++.++++++|++.++|+++..+++....                        
T Consensus      3292 ~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------ 3347 (3956)
T PRK12467       3292 AQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG------------------------ 3347 (3956)
T ss_pred             HHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc------------------------
Confidence            98888999999999999874   789999999999999999999999887542100                        


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCc---
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM---  432 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~---  432 (660)
                                             ...++||.+++|||++++++.+.|.+.+ ++.++|.||+||++..++.......   
T Consensus      3348 -----------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 3404 (3956)
T PRK12467       3348 -----------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVC 3404 (3956)
T ss_pred             -----------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEeccccccc
Confidence                                   0114899999999999999999998776 6889999999999987665433221   


Q ss_pred             -cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCC-------ccccCceEEE
Q 006115          433 -CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQI  503 (660)
Q Consensus       433 -~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g-------~~~TGDl~~~  503 (660)
                       ....++|+|++|++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.| .++       ||+|||+|++
T Consensus      3405 ~~~~~~iG~p~~~~~~~v~d-~~~~--~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~ 3481 (3956)
T PRK12467       3405 EAPYAPIGRPVAGRSIYVLD-GQLN--PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481 (3956)
T ss_pred             CCCCCCCccccCCCEEEEEC-CCCC--CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhee
Confidence             1236799999999999998 5544  56677999999999999999999999999999 443       6999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      ++||.++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++..+  .+.++|++++....               
T Consensus      3482 ~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~--------------- 3545 (3956)
T PRK12467       3482 RADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ--------------- 3545 (3956)
T ss_pred             cCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCC---------------
Confidence            999999999999999998 799999999999999999999999998643  35899999987531               


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                           .    ...+.|+++++ ..||.|++|..|+++      +.+|+|++||++|++|.+..
T Consensus      3546 -----~----~~~~~l~~~l~-~~Lp~y~vP~~~~~l------~~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3546 -----G----DWRETLRDHLA-ASLPDYMVPAQLLVL------AAMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             -----c----ccHHHHHHHHh-ccCChhhCCCeeeee------ccCCCCCCCccchhhcCCCC
Confidence                 0    01233444554 789999999999887      45699999999999998653

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-59  Score=518.28  Aligned_cols=514  Identities=22%  Similarity=0.282  Sum_probs=395.7

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      +...+++.++|..+++++||++|+++.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++
T Consensus        19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~   89 (557)
T PRK07059         19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA   89 (557)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence            344578999999999999999999875   3      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHH--HH-------
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KE-------  188 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~-------  188 (660)
                      ++||+++|++++|++|..+.+++.++++.++++++|+++.....+..... . .....++.........  ..       
T Consensus        90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (557)
T PRK07059         90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLA-K-TAVKHVVVASMGDLLGFKGHIVNFVVR  167 (557)
T ss_pred             HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhc-c-cCCceeEEecccccccccccccccccc
Confidence            99999999999999999999999999999999999998765443322111 1 1122222211000000  00       


Q ss_pred             -HH----hhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccc-ccCC
Q 006115          189 -MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDK  262 (660)
Q Consensus       189 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~-~~~~  262 (660)
                       ..    .........+.+++..............++++++++|||||||.||+|.++|.+++.++......+.. ....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~  247 (557)
T PRK07059        168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK  247 (557)
T ss_pred             cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence             00    00011223455554433222222344578899999999999999999999999998776544332210 0001


Q ss_pred             -CCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006115          263 -MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       263 -~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                       ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|++.++|.++..+.....       
T Consensus       248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------  320 (557)
T PRK07059        248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------  320 (557)
T ss_pred             CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC-------
Confidence             112457788999999988764 5567788888777654  78899999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCC
Q 006115          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~t  418 (660)
                                                    ....++        +++|.++.||+++++.+.+.|.+.+++++++.||+|
T Consensus       321 ------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t  362 (557)
T PRK07059        321 ------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLS  362 (557)
T ss_pred             ------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeeccccc
Confidence                                          001111        388999999999999999999988999999999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcccc
Q 006115          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~T  497 (660)
                      |++.+++.........+.++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|
T Consensus       363 E~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~T  439 (557)
T PRK07059        363 ETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRT  439 (557)
T ss_pred             cccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceec
Confidence            999876655443333457899999999999998 5554  45567899999999999999999999998888 6899999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006115          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+++++++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++.   +.++++++.....        
T Consensus       440 GDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~--------  510 (557)
T PRK07059        440 GDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA--------  510 (557)
T ss_pred             CcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC--------
Confidence            999999999999999999999996 7999999999999999999999999987654   3677777755321        


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                       .        +.        +.+.++++ +.|+.+.+|..+.++      +.+|+|++||++|+.|+++
T Consensus       511 -~--------~~--------~~l~~~~~-~~l~~~~~P~~i~~v------~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        511 -L--------TE--------EDVKAFCK-ERLTNYKRPKFVEFR------TELPKTNVGKILRRELRDG  555 (557)
T ss_pred             -C--------CH--------HHHHHHHH-HhcccccCCcEEEEe------ccCCCCcccceeHHHHHhh
Confidence             0        11        23333443 578999999999987      4569999999999999865

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-59  Score=517.85  Aligned_cols=484  Identities=20%  Similarity=0.204  Sum_probs=377.4

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCChhhHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      .|+.++|..++  +|+++|+++.    +     .++||.||.++++++|.+|.+.|+ ++||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            57888888764  6999999764    3     479999999999999999999999 8999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++++.++++++|+++.....+.+..   .+..+. +..+..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVRV-LDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCceE-EEccch----------------hh
Confidence            9999999999999999999999999999999999887665442211   112222 222211                12


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .+++.... ...+.....++++++++|||||||.||+|.++|.++...+......+     ++..+|+++..+|++|.++
T Consensus       132 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAAG-ALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhcccc-CcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            23322111 11112235679999999999999999999999999988877766666     7889999999999999988


Q ss_pred             HHHH-HHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          281 RVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +... +.++..|+++++.+. ++..+++.++++++|++..+|..+..++.....                          
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--------------------------  259 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER--------------------------  259 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--------------------------
Confidence            8764 456889999988765 899999999999999999999998876532100                          


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCcc
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (660)
                              +  .         ....+++.+ + |+.+++.....+.+.+++++++.||+||++.++.....   ...+++
T Consensus       260 --------~--~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~v  315 (540)
T PRK13388        260 --------P--D---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREPG---TPPGSI  315 (540)
T ss_pred             --------c--c---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCCC---CCCCCC
Confidence                    0  0         000256643 3 56678888888888889999999999999876654321   234789


Q ss_pred             CCCccCeeEE-----------eeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEECCC
Q 006115          439 GPVSVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (660)
Q Consensus       439 G~~~~~~~v~-----------iv~~~~~~~~~~~~g~~GEi~v~-g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~  506 (660)
                      |.|++++++.           ++|  +++....+.++.|||+++ |+.++.||+++++.+.+.|.+|||+|||+|++|++
T Consensus       316 G~p~~g~~i~~~~~~~~~~~~~~d--~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d  393 (540)
T PRK13388        316 GRGAPGVAIYNPETLTECAVARFD--AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD  393 (540)
T ss_pred             CCCCCCcEEEcCCCCccccceecc--CccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence            9999997653           111  112112234568999998 99999999999999999999999999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006115          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |.+++.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.   +.+++++++.++..        .       
T Consensus       394 g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~--------~-------  457 (540)
T PRK13388        394 GWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT--------F-------  457 (540)
T ss_pred             CcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc--------C-------
Confidence            999999999999997 8999999999999999999999999997754   36677777765420        0       


Q ss_pred             hccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                       +.+++.+++.    .   +..|+.|++|..++++      +.+|+|++||++|++|+++.
T Consensus       458 -~~~~l~~~l~----~---~~~l~~~~~P~~~~~v------~~iP~t~~GKv~R~~L~~~~  504 (540)
T PRK13388        458 -DPDAFAAFLA----A---QPDLGTKAWPRYVRIA------ADLPSTATNKVLKRELIAQG  504 (540)
T ss_pred             -CHHHHHHHHH----h---hccCCcccCCcEEEEe------ccCCCCCcceeeHHhHHHhc
Confidence             1112222221    1   2469999999999987      45699999999999999865

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=3.1e-59  Score=519.53  Aligned_cols=518  Identities=23%  Similarity=0.293  Sum_probs=389.9

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++...|...++.+|+++|+.+.    +     +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46889999999999999999864    2     47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccc------cccCccEEEEecCCcHHHHHHHhhCCc
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      +++|++++|+++.++.+++.++|+.++++++|+++............      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999988765433221110      000111233332211000000000112


Q ss_pred             eeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh
Q 006115          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (660)
                      ....|.+++...............+++++++|||||||.||+|.+||.++..........+     ++..+++++..+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            2335666654432111111223345678899999999999999999999876655443333     67789999999999


Q ss_pred             hhHHHHHHHHH-HhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          276 AHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       276 ~~~~g~~~~~~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      +|..++...+. .+..|.++++...++..+++.++++++|+++++|+++..|.+......                    
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  305 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--------------------  305 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--------------------
Confidence            99998765443 466677666655599999999999999999999999998865321100                    


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC----
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----  430 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~----  430 (660)
                                   .           ...++++.++++|+++++.+.+.+.+. +.++++.||+||+++.++.+...    
T Consensus       306 -------------~-----------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        306 -------------I-----------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             -------------c-----------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                         0           001488999999999999999998875 88999999999986544332110    


Q ss_pred             ------CccccCccCCCccCee-EEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEE
Q 006115          431 ------EMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (660)
Q Consensus       431 ------~~~~~~~~G~~~~~~~-v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~  503 (660)
                            ......+.|.+.++++ +++++.+.+...+.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                  0111235677788775 788872233333333336799999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      |++|+++++||.+|+|++ +|++|+|.+||.+|.+||.|.+|+|++.++.   ..+++++++..+...            
T Consensus       441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------  507 (567)
T PLN02479        441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDK------------  507 (567)
T ss_pred             cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccc------------
Confidence            999999999999999996 8999999999999999999999999997654   378888887764310            


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                          ++   .+.+.++|.++++ .+||.|++|+.+.+.       .+|+|++||++|++|++.+..
T Consensus       508 ----~~---~~~~~~~l~~~~~-~~l~~~~~P~~~~~~-------~iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        508 ----SD---EAALAEDIMKFCR-ERLPAYWVPKSVVFG-------PLPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             ----cc---hhhhHHHHHHHHH-hhcccccCCceEEec-------cCCCCCccCeeHHHHHHHHHh
Confidence                00   1123345566664 789999999988752       258999999999999887544

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.9e-59  Score=515.11  Aligned_cols=484  Identities=18%  Similarity=0.207  Sum_probs=389.2

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHH
Q 006115           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~  122 (660)
                      ++.+.|.+.|+.+|+++|+...    +     +++||.||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            4789999999999999998764    3     479999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHH
Q 006115          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|+++.++.+.+.++++..+++.++++........        ... ++.++.                  ...
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------GTQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc--------CCc-eEEchH------------------hhh
Confidence            99999999999999999999999999999999876533221        111 111111                  011


Q ss_pred             HHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHH
Q 006115          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  282 (660)
                      +.... ..........++++++++|||||||.||+|.++|.++...+......+     +...+++++++.|++|..++.
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSG-GPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhc-CCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            11111 111112234678999999999999999999999999998888766655     778899999999999999988


Q ss_pred             HHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       283 ~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      .++.++..|+++++.+.    ++..+++.+.++++|.+.++|.++..++......                         
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~-------------------------  253 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN-------------------------  253 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc-------------------------
Confidence            88889999999998764    7889999999999999999999987764321000                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----cc
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MC  433 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----~~  433 (660)
                                  .        ...++++.++++|+++++.+.+.+.+.+ ++++++.||+||++..++......    ..
T Consensus       254 ------------~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       254 ------------Q--------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             ------------c--------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence                        0        0114899999999999999999998887 789999999999886544332211    22


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--CccccCceEEECCCCcE
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVV  509 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--~--g~~~TGDl~~~~~~G~l  509 (660)
                      ...++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.  +  +||+|||+|++|++ ++
T Consensus       314 ~~~~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l  389 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL  389 (502)
T ss_pred             CccccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence            235799999999999999 5543  455678999999999999999999999888772  2  59999999999966 99


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC--CC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      ++.||.+|+|++ +|++|+|.+||+.+.++|.|++|++++..  +.  ..++++|++......                .
T Consensus       390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~----------------~  452 (502)
T TIGR01734       390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE----------------K  452 (502)
T ss_pred             EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc----------------c
Confidence            999999999996 89999999999999999999999999843  22  378888887764210                1


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      ..    .+.++|++.++ +.|+.|++|+.++++      +++|+|++||++|++|++++.
T Consensus       453 ~~----~~~~~i~~~~~-~~l~~~~~P~~~~~v------~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       453 EF----QLTKAIKKELK-KSLPAYMIPRKFIYR------DQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             ch----hhHHHHHHHHh-hhChhhcCCcEEEEc------cccCCCCCCcccHHHHHHhhc
Confidence            11    22344445554 789999999999987      456999999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5e-60  Score=497.23  Aligned_cols=516  Identities=20%  Similarity=0.222  Sum_probs=414.4

Q ss_pred             CCCCCCCcHHHHHHHHH-Hh-CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh
Q 006115           36 SVDSDLNTAWDIFSMSV-QK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a-~~-~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~  113 (660)
                      ++++.+.++.+.+..+. +. .+|.+++++.   +..+++...+||.|+.+++.++|+.|.+.|+++||+|++++|+.++
T Consensus        57 w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e  133 (626)
T KOG1175|consen   57 WFPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPE  133 (626)
T ss_pred             ccccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChH
Confidence            56666666666654443 33 5899999987   4445555569999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcccccc--------cc----C-ccEEEEec
Q 006115          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS--------AQ----R-LRVMVCFT  180 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~----~-~~~i~~~~  180 (660)
                      ++++++||.++|++.+++-..+++.++...|+.++++++++.+.............        ..    . ...+++..
T Consensus       134 ~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~  213 (626)
T KOG1175|consen  134 AVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSR  213 (626)
T ss_pred             HHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEec
Confidence            99999999999999999999999999999999999999999886443221111100        00    0 00111111


Q ss_pred             CCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHh-HHHHhhhcccccccc
Q 006115          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQF  259 (660)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~-l~~~~~~~~~~~~~~  259 (660)
                      .             .....|..++... ....++...+.+|+.+|+|||||||.||++.+++.. ++..+.....++   
T Consensus       214 ~-------------~~d~~~~~~~~~a-~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~---  276 (626)
T KOG1175|consen  214 R-------------NRDLFWSLELKKA-SPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF---  276 (626)
T ss_pred             c-------------cccccHHHHhhhc-CCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec---
Confidence            0             0123455554444 333347778999999999999999999999988764 555555555555   


Q ss_pred             cCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHH
Q 006115          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (660)
Q Consensus       260 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~  335 (660)
                        +++++|+++++....|+.|... .+.++..|+++++++.   ++..+++.+.++++|++++.|+.++.+.+...... 
T Consensus       277 --d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~-  353 (626)
T KOG1175|consen  277 --DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV-  353 (626)
T ss_pred             --cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccc-
Confidence              8999999999999999999887 5668999999999875   78999999999999999999999997754322111 


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeee
Q 006115          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQG  414 (660)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~  414 (660)
                                                        ....+        ++||.+.++||+++++...++.+.++. +|.+.
T Consensus       354 ----------------------------------~~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~  391 (626)
T KOG1175|consen  354 ----------------------------------TSYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYET  391 (626)
T ss_pred             ----------------------------------ccccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhc
Confidence                                              11111        289999999999999999999999987 79999


Q ss_pred             cCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--C-CcccccCCCchhhhhcc
Q 006115          415 YGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI  490 (660)
Q Consensus       415 YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~-~~~~gy~~~~~~~~~~f  490 (660)
                      ||.||+|+.+..+..+. ...+++.+.|.+|+.+.|+| +++...+... +.|+|+++.  | +++++||+|++.-...+
T Consensus       392 ~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~y  469 (626)
T KOG1175|consen  392 YGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAY  469 (626)
T ss_pred             eeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhh
Confidence            99999999999888877 67779999999999999999 6555444433 889999997  3 67899999998554443


Q ss_pred             ---cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCh
Q 006115          491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (660)
Q Consensus       491 ---~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~  564 (660)
                         ..|||.|||.+++|+||++++.||.||+|++ +|+++++.|||+++..||.|.|++|+|.+++   +.+.|||++++
T Consensus       470 f~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~  548 (626)
T KOG1175|consen  470 FKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKS  548 (626)
T ss_pred             cccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcC
Confidence               3799999999999999999999999999997 7999999999999999999999999998866   48999999998


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +..                 +.+++.++|.+    ++ |..+.++..|+.|.++++      +|+|.+||+.|+.||+..
T Consensus       549 g~~-----------------~~~~L~kel~~----~V-R~~igp~a~P~~I~~v~~------LPkTrSGKimRr~lrki~  600 (626)
T KOG1175|consen  549 GSH-----------------DPEQLTKELVK----HV-RSVIGPYAVPRLIVFVPG------LPKTRSGKIMRRALRKIA  600 (626)
T ss_pred             CCC-----------------ChHHHHHHHHH----HH-HhhcCcccccceeEecCC------CCccccchhHHHHHHHHh
Confidence            631                 33444444444    44 488999999999999855      489999999999999987


Q ss_pred             HHH
Q 006115          645 QVE  647 (660)
Q Consensus       645 ~~~  647 (660)
                      ..+
T Consensus       601 ~g~  603 (626)
T KOG1175|consen  601 SGK  603 (626)
T ss_pred             ccC
Confidence            654

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-59  Score=511.82  Aligned_cols=474  Identities=23%  Similarity=0.272  Sum_probs=378.4

Q ss_pred             HHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeE
Q 006115           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (660)
Q Consensus        49 ~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  128 (660)
                      +.+++.+||++|+...  .++     +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4677889999998752  022     579999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCc
Q 006115          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (660)
Q Consensus       129 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (660)
                      +|+++..+.+.+.++++.++++++|+++.......           ..                     ..++.+.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence            99999999999999999999999999875432100           00                     01111111110


Q ss_pred             -cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-HHH
Q 006115          209 -VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  286 (660)
Q Consensus       209 -~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~  286 (660)
                       ...........+++++++|||||||.||+|.++|+++...+..+....     .+..+|++++.+|++|.+|+.. +..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             011112234568899999999999999999999999988777665544     5778999999999999999876 455


Q ss_pred             HhhcCcEEEEecC-ChHHHHHHhh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCC
Q 006115          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (660)
Q Consensus       287 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|.++..+.+...                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            6888999888765 7888888886  4899999999999987753210                                


Q ss_pred             CcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC--CccccCccCCC
Q 006115          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV  441 (660)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~~  441 (660)
                           .+...        .++||.+++||++++....+.+.+. |+++++.||+||++.........  .....+++|.|
T Consensus       246 -----~~~~~--------~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        246 -----FDAAA--------LRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             -----cCccc--------cccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                 00001        1389999999999999988877764 89999999999998754332211  12234789999


Q ss_pred             ccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeE
Q 006115          442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       442 ~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      +++++++|++ +++.  +++.|+.|||+|+|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+|+
T Consensus       312 ~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~  388 (488)
T PRK09088        312 TPTVQTRVVD-DQGN--DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI  388 (488)
T ss_pred             CCCcEEEEEC-CCCC--CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            9999999998 5544  45567899999999999999999999998888 589999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006115          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|.+|+|.+||++|.++|.|.+++|++.+++   ...++++++.++..          .      +        .+.+
T Consensus       389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------~------~--------~~~l  443 (488)
T PRK09088        389 S-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP----------L------D--------LERI  443 (488)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC----------C------C--------HHHH
Confidence            6 8999999999999999999999999997754   46778888765320          0      0        1234


Q ss_pred             HHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      .++++ ..++.|++|..+.++      +.+|+|++||++|++|++++.+.
T Consensus       444 ~~~~~-~~l~~~~~p~~i~~~------~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        444 RSHLS-TRLAKYKVPKHLRLV------DALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             HHHHH-hhCcCCCCCCEEEEc------ccCCCCCCCceeHHHHHHHHHhc
Confidence            44443 678999999999887      44699999999999999988653

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-59  Score=518.46  Aligned_cols=511  Identities=23%  Similarity=0.294  Sum_probs=391.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      .+++.++|..+++.+|+++|+++.    +     +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus        23 ~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA   93 (563)
T PRK06710         23 IQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYG   93 (563)
T ss_pred             cccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence            468999999999999999999874    3     5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCc-----HHH-HHHHhh--
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT-----AEQ-KEMAVQ--  192 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~-~~~~~~--  192 (660)
                      |+++|++++|++|..+.+++.++++.++++.+++++........... . .....++......     ... ......  
T Consensus        94 ~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (563)
T PRK06710         94 TLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQS-A-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQ  171 (563)
T ss_pred             HHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccch-h-hccceeEEeccccccccccccccchhhccc
Confidence            99999999999999999999999999999999998865443322111 0 1111121111000     000 000000  


Q ss_pred             --------CCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC-
Q 006115          193 --------TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-  263 (660)
Q Consensus       193 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~-  263 (660)
                              .......|..+.... ..........++++++++|||||||.||+|.++|.++...+......+    ... 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~~  246 (563)
T PRK06710        172 SNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNCK  246 (563)
T ss_pred             ccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCCC
Confidence                    000000122211111 011111122457899999999999999999999999876543322211    022 


Q ss_pred             CCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       264 ~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ..++++++++|++|.+|+.. +..+++.|+++++.+. ++..+++.++++++|++.++|+++..+++...          
T Consensus       247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------  316 (563)
T PRK06710        247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL----------  316 (563)
T ss_pred             CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc----------
Confidence            34568899999999998865 4567889999988776 89999999999999999999999988754210          


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCC
Q 006115          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~  421 (660)
                                                 ....++        +++|.+++||+++++++.+++.+.+++++++.||+||++
T Consensus       317 ---------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  361 (563)
T PRK06710        317 ---------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESS  361 (563)
T ss_pred             ---------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCc
Confidence                                       000111        388999999999999999999998899999999999998


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceE
Q 006115          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~  501 (660)
                      .++...........+++|.+++++.+++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++
T Consensus       362 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~  439 (563)
T PRK06710        362 PVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVG  439 (563)
T ss_pred             cccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceE
Confidence            865543332233347899999999999998 4433 45666789999999999999999999999998999999999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006115          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      +++++|.+++.||.+|+|++ +|.+|+|.+||+.|.+||.|.+++|++.++.   ..++++++..++..        .  
T Consensus       440 ~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--  508 (563)
T PRK06710        440 YMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTE--------C--  508 (563)
T ss_pred             EEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCC--------C--
Confidence            99999999999999999997 7999999999999999999999999997654   46888888765420        0  


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            +.        +.+.++++ +.|+.|++|..+.++      +.+|+|++||++|++|++++..
T Consensus       509 ------~~--------~~l~~~~~-~~l~~~~~P~~~~~v------~~iP~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        509 ------SE--------EELNQFAR-KYLAAYKVPKVYEFR------DELPKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             ------CH--------HHHHHHHH-HhcccccCCcEEEEc------ccCCCCccchhhHHHHHHHHhh
Confidence                  11        22333443 679999999988887      4469999999999999987754

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-59  Score=525.79  Aligned_cols=501  Identities=20%  Similarity=0.234  Sum_probs=383.0

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~  116 (660)
                      .+....++.+.|.++++++||++|+++.   +      +++||.||.++++++|.+|.+.|+++||+|+++++|++++++
T Consensus        32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~  102 (600)
T PRK08279         32 TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA  102 (600)
T ss_pred             CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence            4456689999999999999999999875   3      479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++|||+++|++++++++..+.+++.++++.++++++|++++....+.+... .......++..+.....          .
T Consensus       103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~  171 (600)
T PRK08279        103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARA-DLARPPRLWVAGGDTLD----------D  171 (600)
T ss_pred             HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhh-hhcccceEEEecCcccc----------c
Confidence            999999999999999999999999999999999999999876655433221 11222223333221100          0


Q ss_pred             eeeHHHHHhcCccC----CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEe
Q 006115          197 PYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       197 ~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (660)
                      ...+.++.......    ........++++++|+|||||||.||+|.+||+++.+++..+...+     ++.++|++++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~  246 (600)
T PRK08279        172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC  246 (600)
T ss_pred             cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence            11233332211111    1122344678999999999999999999999999999998877666     78899999999


Q ss_pred             cChhhHHHHHHHH-HHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006115          273 LPLAHILDRVIEE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       273 ~p~~~~~g~~~~~-~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      +|++|.+|+...+ .++..|+++++.+. ++..+++.++++++|++.++|++++.+........                
T Consensus       247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~----------------  310 (600)
T PRK08279        247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT----------------  310 (600)
T ss_pred             cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc----------------
Confidence            9999999988654 55788888888776 89999999999999999999999987754211000                


Q ss_pred             HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceecccC
Q 006115          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFP  429 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~  429 (660)
                                                   ....++|.+  +|+.+++++.+.+.+.++. .+++.||+||++..+...  
T Consensus       311 -----------------------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--  357 (600)
T PRK08279        311 -----------------------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV--  357 (600)
T ss_pred             -----------------------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc--
Confidence                                         001367754  4778999999999988875 599999999988644322  


Q ss_pred             CCccccCccCCCcc----CeeE---------EeeecCCCCCCCCCCCCCceEE--EccCCcccccCCCchhhhhcc----
Q 006115          430 DEMCMVGTAGPVSV----YSEL---------RLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI----  490 (660)
Q Consensus       430 ~~~~~~~~~G~~~~----~~~v---------~iv~~~~~~~~~~~~g~~GEi~--v~g~~~~~gy~~~~~~~~~~f----  490 (660)
                        ....+++|.+.+    +..+         .+.+ .++....++.|+.|||+  +.|+.++.|| ++++.+...|    
T Consensus       358 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~  433 (600)
T PRK08279        358 --FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV  433 (600)
T ss_pred             --CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence              112356665544    2222         2222 23333456677899998  7799999999 8888887765    


Q ss_pred             ---cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEcC
Q 006115          491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPC  563 (660)
Q Consensus       491 ---~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~~  563 (660)
                         .++||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    ...+++++..
T Consensus       434 ~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~  512 (600)
T PRK08279        434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLA  512 (600)
T ss_pred             cCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEec
Confidence               2589999999999999999999999999997 8999999999999999999999999987532    2344555544


Q ss_pred             hhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      .+.        ..        +        .+++.++++ .+||.|++|+.+++++      .+|+|++||++|++|+++
T Consensus       513 ~~~--------~~--------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~  561 (600)
T PRK08279        513 DGA--------EF--------D--------LAALAAHLY-ERLPAYAVPLFVRLVP------ELETTGTFKYRKVDLRKE  561 (600)
T ss_pred             CCc--------cC--------C--------HHHHHHHHH-hhCccccCCeEEEeec------CCCCCcchhhhHHHHhhc
Confidence            321        00        1        123444444 6799999999999984      469999999999999988


Q ss_pred             HHHH
Q 006115          644 YQVE  647 (660)
Q Consensus       644 ~~~~  647 (660)
                      +.+.
T Consensus       562 ~~~~  565 (600)
T PRK08279        562 GFDP  565 (600)
T ss_pred             CCCc
Confidence            7543

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=8.3e-59  Score=513.96  Aligned_cols=513  Identities=24%  Similarity=0.282  Sum_probs=393.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.++|.++++.+|+++|+.+.   +      +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   89 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF   89 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4468999999999999999999864   2      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh--hhhhccccccccCccEEEEecCCcHHHHH---HHhhCC
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRLRVMVCFTSLTAEQKE---MAVQTG  194 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~  194 (660)
                      ||+++|++++|++|..+.+++.++++.++++++|+++...  ....+....  .....++..+........   ......
T Consensus        90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (541)
T TIGR03205        90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD  167 (541)
T ss_pred             HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence            9999999999999999999999999999999999986421  111111110  112222222221100000   000011


Q ss_pred             ceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecC
Q 006115          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (660)
                      ....++.++..... .........++++++++|||||||.||+|+++|.++.....................+++++..|
T Consensus       168 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  246 (541)
T TIGR03205       168 PRIVTYADFVKGAA-APAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLP  246 (541)
T ss_pred             cccccHHHHHhcCC-CCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEecc
Confidence            12344555554321 11122345678999999999999999999999999876554221110000112344578999999


Q ss_pred             hhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006115          275 LAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (660)
Q Consensus       275 ~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (660)
                      ++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|+++..+++...                     
T Consensus       247 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------  305 (541)
T TIGR03205       247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS---------------------  305 (541)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc---------------------
Confidence            999988775 5667889999888765 89999999999999999999999988754210                     


Q ss_pred             HHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc
Q 006115          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~  432 (660)
                                      ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++.+++.......
T Consensus       306 ----------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  361 (541)
T TIGR03205       306 ----------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGP  361 (541)
T ss_pred             ----------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCC
Confidence                            000011        38999999999999999999988889999999999999987765543333


Q ss_pred             cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEE
Q 006115          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       433 ~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      ..++++|.|++++++++++.++.+ .+++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||+++++++|++++.
T Consensus       362 ~~~~~~G~~~~~~~~~v~~~d~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~  440 (541)
T TIGR03205       362 DKPGSIGLMLPGIELDVVSLDDPT-KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLV  440 (541)
T ss_pred             CCCCCcceeccCceeEEEecCCCC-ccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEE
Confidence            334789999999999987633333 4556678999999999999999999999999999999999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.+|+|++ +|++|+|.+||+.+.+||.|.+++|++.+++   +.+++++++.++..       ..        +    
T Consensus       441 GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------~~--------~----  500 (541)
T TIGR03205       441 DRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK-------PF--------S----  500 (541)
T ss_pred             ccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC-------cC--------C----
Confidence            999999996 8999999999999999999999999987654   36788888765420       00        0    


Q ss_pred             HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                          .+.+.++++ +.|+.|++|..|.+++      .+|+|++||++|++|+
T Consensus       501 ----~~~l~~~~~-~~l~~~~~P~~i~~~~------~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       501 ----LDELRAFLA-GKLGKHELPVAVEFVD------ELPRTPVGKLSRHELR  541 (541)
T ss_pred             ----HHHHHHHHH-hhcccccCCcEEEEec------cCCCCcccceeHhhcC
Confidence                123334443 6799999999999984      4599999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.7e-59  Score=570.66  Aligned_cols=481  Identities=20%  Similarity=0.234  Sum_probs=394.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++||++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            368999999999999999999864   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++++.+++++++++......+...     .... +...+                    
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~-~~~~~--------------------  581 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDLT-SLCYN--------------------  581 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCce-eeecc--------------------
Confidence            999999999999999999999999999999999988765443211     0110 11111                    


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                       .....  ....+.....++++++++|||||||.||||+++|+++.+.+.+....+     ++.++|+++...|++|..+
T Consensus       582 -~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        582 -APLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             -ccccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence             00000  011111223678999999999999999999999999999998887777     8899999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +..++.++..|+++++.+.    ++..+.+.++++++|++.++|+++..+++.......                     
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------  712 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------  712 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence            8888899999999999763    889999999999999999999999887653211100                     


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-----  431 (660)
                                            ....+++|.+++||+++++++.+.|.+.++++++|.||+||++..++......     
T Consensus       713 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  770 (1296)
T PRK10252        713 ----------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA  770 (1296)
T ss_pred             ----------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence                                  00013899999999999999999999888999999999999988766544322     


Q ss_pred             -ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c------CCccccCceEEE
Q 006115          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQI  503 (660)
Q Consensus       432 -~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~------~g~~~TGDl~~~  503 (660)
                       .....++|.|++++.++|+| +++.  +++.|+.|||+|+|++++.||+++++.|.+.| .      ++||+|||+|++
T Consensus       771 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~  847 (1296)
T PRK10252        771 VRGSSVPIGYPVWNTGLRILD-ARMR--PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW  847 (1296)
T ss_pred             cCCCCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence             12236799999999999998 5554  55667899999999999999999999999988 2      249999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEec---------CCCCeEEEEEEcChhhHHHHHHHC
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD---------SLKSMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~---------~~~~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ++||.++++||.|++||+ +|++|++.+||++|.+||+|.+|+|+..         .....++++|+...+..       
T Consensus       848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~-------  919 (1296)
T PRK10252        848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP-------  919 (1296)
T ss_pred             cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC-------
Confidence            999999999999999997 7999999999999999999999987643         11237999998765320       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                       .        +        .++|+++++ ..||.|++|..++.+      +.+|+|++||++|++|.+
T Consensus       920 -~--------~--------~~~l~~~l~-~~Lp~~~~P~~~~~~------~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        920 -L--------D--------TSALQAQLR-ERLPPHMVPVVLLQL------DQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             -C--------C--------HHHHHHHHH-hhCchhcCCcEEEEe------cCCCCCCCcChhHHhcCC
Confidence             0        1        122334443 689999999999887      456999999999999975

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-58  Score=513.71  Aligned_cols=514  Identities=20%  Similarity=0.246  Sum_probs=393.5

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      +....++.++|+++++.+||++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++
T Consensus        29 ~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~   99 (567)
T PRK06178         29 PHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIV   99 (567)
T ss_pred             CcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHH
Confidence            344468999999999999999999874   3      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHH--HHHh----
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK--EMAV----  191 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~----  191 (660)
                      ++||+++|++++|++|..+.+.+.++++.++++++++++.....+.+... .. ....++..........  ....    
T Consensus       100 ~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~  177 (567)
T PRK06178        100 FFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRA-ET-SLRHVIVTSLADVLPAEPTLPLPDSL  177 (567)
T ss_pred             HHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhc-cC-CcceEEEecccccccccccccccccc
Confidence            99999999999999999999999999999999999999887665533221 11 2233333221110000  0000    


Q ss_pred             -hCCceeeeHHHHHhcCc--cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcE
Q 006115          192 -QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       192 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (660)
                       ........+.++.....  ..........++++++++|||||||.||+|.+||.++...+.......    ..+..+++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~  253 (567)
T PRK06178        178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSV  253 (567)
T ss_pred             ccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcE
Confidence             00000011222222111  111122345688999999999999999999999999887665443221    15778999


Q ss_pred             EEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006115          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++.++|++|.+|+.. ++.+++.|+++++.+. ++..++..++++++|.+.++|..+..+.....               
T Consensus       254 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~---------------  318 (567)
T PRK06178        254 FLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR---------------  318 (567)
T ss_pred             EEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC---------------
Confidence            999999999999864 6777999999999886 89999999999999999999998877653210               


Q ss_pred             HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEE--EccCCCCHHHHHHHHHhcCCceee-ecCCCCCCCc
Q 006115          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGP  423 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~--~~G~~l~~~~~~~~~~~~~~~v~~-~YG~tE~~~~  423 (660)
                                            ....++        ++++.+.  +.++.+++++.+.+++.+|..++. .||+||++..
T Consensus       319 ----------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~  368 (567)
T PRK06178        319 ----------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTC  368 (567)
T ss_pred             ----------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCccccccccccccccc
Confidence                                  000111        2566554  446899999999999988877664 7999998866


Q ss_pred             eecccC---CC---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCcccc
Q 006115          424 TTVCFP---DE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT  497 (660)
Q Consensus       424 ~~~~~~---~~---~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~T  497 (660)
                      +.....   ..   ...+.++|.|++|++++++| ++.+ .+++.|+.|||+++|++++.||+++++.+...|.+|||+|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~T  446 (567)
T PRK06178        369 DTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICD-FETG-ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHT  446 (567)
T ss_pred             ceeccccccCccccccCCcccccccCCcEEEEEc-CCCC-CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceee
Confidence            443321   11   12346789999999999998 4332 4455678999999999999999999999998899999999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006115          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+++++++|+++++||.+|+|++ +|.+|+|.+||+++.++|+|.+++|++.++.   +.++++++++++..       
T Consensus       447 GDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~-------  518 (567)
T PRK06178        447 GDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGAD-------  518 (567)
T ss_pred             cceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCc-------
Confidence            999999999999999999999997 8999999999999999999999999987654   46888888775320       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       .        +        .+.|.++++ +.++.|++|. +.++      +++|+|++||++|++|++++++
T Consensus       519 -~--------~--------~~~l~~~~~-~~l~~~~~p~-i~~v------~~iP~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        519 -L--------T--------AAALQAWCR-ENMAVYKVPE-IRIV------DALPMTATGKVRKQDLQALAEE  565 (567)
T ss_pred             -C--------C--------HHHHHHHHH-hcCcccCCce-EEEe------ccCCCCCccceeHHHHHHHHHh
Confidence             0        1        123344443 6799999996 6665      4569999999999999988865

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1e-58  Score=509.57  Aligned_cols=498  Identities=22%  Similarity=0.213  Sum_probs=399.3

Q ss_pred             CCcHHHHHHHH-HHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~-a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      .+...+++..+ ++.+||++|++..   +      ..+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            46677888887 6779999998753   2      579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+.+.++++.+++++++++......+.+.. ...+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL-GKSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHH-hcCCCccEEEEeCCCCc-----------cccc
Confidence            99999999999999999999999999999999999987665443221 22334445555443211           1123


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCcEEEEecChhhH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      +.++...... ........++++++++|||||||.||+|+++|+++...+.. ....+     ++..+|+++..+|++|.
T Consensus       142 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  215 (508)
T TIGR02262       142 LAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA  215 (508)
T ss_pred             HHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence            4444332211 11223445789999999999999999999999999887755 23333     67889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      +++.. ++.++..|+++++.+.  ++..++..+++++||+++++|.++..++......                      
T Consensus       216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~----------------------  273 (508)
T TIGR02262       216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP----------------------  273 (508)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccc----------------------
Confidence            99865 5567889999988774  7999999999999999999999887764321000                      


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcccc
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (660)
                                             ...+.++|.++++|+++++++.+.|.+.+++++++.||+||++.++..+..+.. ..
T Consensus       274 -----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~  329 (508)
T TIGR02262       274 -----------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RY  329 (508)
T ss_pred             -----------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CC
Confidence                                   001148999999999999999999999999999999999999986655433322 33


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc
Q 006115          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (660)
Q Consensus       436 ~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~  515 (660)
                      +++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.++||+|||+++++++|.++++||.
T Consensus       330 ~~~G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~  406 (508)
T TIGR02262       330 GTSGKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT  406 (508)
T ss_pred             CCcCCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence            6899999999999998 5554  455678999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006115          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      +|+|++ +|.+++|.+||+.|.++|+|.++++++.++.   ..+.+++++.++..                 .    .+.
T Consensus       407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~----~~~  464 (508)
T TIGR02262       407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD-----------------I----DTA  464 (508)
T ss_pred             cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc-----------------c----ccc
Confidence            999997 7999999999999999999999999996543   36778888765420                 0    011


Q ss_pred             HHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      +.+.|.++++ ..|+.+++|..+.+++      .+|+|++||++|++|+++
T Consensus       465 ~~~~i~~~~~-~~l~~~~~p~~i~~~~------~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       465 LETELKEHVK-DRLAPYKYPRWIVFVD------DLPKTATGKIQRFKLREG  508 (508)
T ss_pred             cHHHHHHHHH-HhcccCCCCceEEEec------CCCCCCCCcEehhhccCC
Confidence            2334555554 6799999999888874      459999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=8.6e-60  Score=611.18  Aligned_cols=494  Identities=21%  Similarity=0.208  Sum_probs=402.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++||++|+++.   +      +++||+||.++++++|++|.+.|+++|++|++++++++++++++||
T Consensus      1573 ~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~la 1643 (3956)
T PRK12467       1573 ARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLA 1643 (3956)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHH
Confidence            468999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++++.+++++++++......+...     ... .++.++...                 
T Consensus      1644 vlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~----------------- 1700 (3956)
T PRK12467       1644 ILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED----------------- 1700 (3956)
T ss_pred             hhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc-----------------
Confidence            999999999999999999999999999999999987654433110     111 122222111                 


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                       .+.... ....+.....+++++|++|||||||.||||+++|+++++.+.+....+     ++..+|+++.+.|++|..+
T Consensus      1701 -~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 1773 (3956)
T PRK12467       1701 -DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVS 1773 (3956)
T ss_pred             -chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHH
Confidence             011111 111222345688999999999999999999999999999998877766     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +..++.++..|+++++.+.    ++..+++.|+++++|++.++|+++..|...... .                      
T Consensus      1774 ~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~---------------------- 1830 (3956)
T PRK12467       1774 VWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-V---------------------- 1830 (3956)
T ss_pred             HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-c----------------------
Confidence            8888899999999999864    789999999999999999999999988653100 0                      


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC----C
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----E  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~----~  431 (660)
                                             ...++||.+++|||++++++.+.|.+.+ +..++|.||+||++..++.....    .
T Consensus      1831 -----------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~ 1887 (3956)
T PRK12467       1831 -----------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887 (3956)
T ss_pred             -----------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccc
Confidence                                   0014899999999999999999888776 57899999999999876654322    1


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceEEE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--------~g~~~TGDl~~~  503 (660)
                      .....++|+|++++.++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.        ++||+|||+|++
T Consensus      1888 ~~~~~~iG~p~~~~~~~vld-~~~~--~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1964 (3956)
T PRK12467       1888 GRDSVPIGQPIANLSTYILD-ASLN--PVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964 (3956)
T ss_pred             cCCCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEE
Confidence            12236899999999999998 5544  556678999999999999999999999999882        249999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      ++||.++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+.  ...++|+++...+...             
T Consensus      1965 ~~dG~l~~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~------------- 2030 (3956)
T PRK12467       1965 RADGVIEYLGRIDHQVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLV------------- 2030 (3956)
T ss_pred             CCCCCEEEecccCceEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccc-------------
Confidence            999999999999999998 799999999999999999999999998753  2489999987654210             


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         ...+......+.|+++++ ..||.|++|..++++      +++|+|++||++|++|.+.+..
T Consensus      2031 ---~~~~~~~~~~~~l~~~l~-~~Lp~ymvP~~~~~l------~~lP~t~~GKidr~~L~~~~~~ 2085 (3956)
T PRK12467       2031 ---DDDEAQVALRAILKNHLK-ASLPEYMVPAHLVFL------ARMPLTPNGKLDRKALPAPDAS 2085 (3956)
T ss_pred             ---cccccccccHHHHHHHHH-hhCchhhCchhhhhh------hcCCCCCCCCcchhhCCCCccc
Confidence               000111122344555654 789999999999987      4569999999999999765433

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=3.3e-58  Score=511.52  Aligned_cols=510  Identities=23%  Similarity=0.309  Sum_probs=392.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..++.++|.++++.+|+++|+++.    +     +++||.||.+++.++|.+|+ +.|+++||+|+++++|+++++++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            357899999999999999999864    3     57999999999999999997 6799999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCc-----HHH-H----H-
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT-----AEQ-K----E-  188 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~-~----~-  188 (660)
                      ||+++|++++|++|.++.+++.++++.++++++++++.....+...... . ....++......     ... .    . 
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD-T-PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC-C-CccEEEEechhhhcccccchhhhhhhhh
Confidence            9999999999999999999999999999999999988765544332211 1 122222221000     000 0    0 


Q ss_pred             -H---HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCC
Q 006115          189 -M---AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (660)
Q Consensus       189 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (660)
                       .   ..........+.+................++++++++|||||||.||+|.++|.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence             0   00000112234444433322222233456789999999999999999999999999887766544431110 123


Q ss_pred             C-CcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006115          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       265 ~-~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                      . .+++++..|++|.+++.. .+.++..|++++++..  ++..+++.++++++|++.++|.++..+.+...         
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------  322 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG---------  322 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence            3 367788899999999865 4555667777766553  88999999999999999999999988764210         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCC
Q 006115          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~  420 (660)
                                                  .+..++        ++||.+++||+++++.+.+.+++.+++++++.||+||+
T Consensus       323 ----------------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        323 ----------------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             ----------------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                        111122        38999999999999999999999889999999999999


Q ss_pred             CCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCc
Q 006115          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  499 (660)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGD  499 (660)
                      +..++.+........+++|.|++++++++++ +++.  +++.++.|||+++|+.++.||+++++.+...| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGT--VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            8876655433333447899999999999998 5554  45566899999999999999999999998888 689999999


Q ss_pred             eEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCC
Q 006115          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  576 (660)
Q Consensus       500 l~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  576 (660)
                      +|+++++|.+++.||.+|+|++ +|.+|+|.+||+.|..||+|.+|+|++.++.   ..++++++.....         .
T Consensus       444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~  513 (560)
T PRK08751        444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA---------L  513 (560)
T ss_pred             eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC---------C
Confidence            9999999999999999999997 7999999999999999999999999997654   3566666654311         0


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                              +.        +.+++.++ ..++.|++|..+.++      +.+|+|++||++|++|++.
T Consensus       514 --------~~--------~~l~~~~~-~~l~~~~~P~~v~~v------~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        514 --------TA--------EDVKAHAR-ANLTGYKQPRIIEFR------KELPKTNVGKILRRELRDA  557 (560)
T ss_pred             --------CH--------HHHHHHHH-HhhhhccCCeEEEEh------hhCCCCccccccHHHHHHh
Confidence                    11        12333333 578899999999987      4469999999999999876

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-58  Score=508.78  Aligned_cols=478  Identities=22%  Similarity=0.236  Sum_probs=378.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.+.|..+++++||++|+...   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la  104 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFA  104 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            477999999999999999999753   2      3799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....                
T Consensus       105 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~----------------  161 (516)
T PRK13383        105 VGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA----------------  161 (516)
T ss_pred             HHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh----------------
Confidence            9999999999999999999999999999999999887655432210       11222221100                


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                       ..  .    .....+...++.++++|||||||.||+|.++|.... ........+.  ..++..+++++..+|++|.+|
T Consensus       162 -~~--~----~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~~~~--~~~~~~~d~~~~~~pl~h~~g  231 (516)
T PRK13383        162 -GA--E----ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWVTILD--RTRLRTGSRISVAMPMFHGLG  231 (516)
T ss_pred             -hh--h----cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHHhHHh--hhccCCCCeEEEecCCcchhh
Confidence             00  0    000111234567899999999999999999997432 2111111111  116778999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Q 006115          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      +...+.++..|+++++... ++..+++.++++++|.+.++|+++..+........                         
T Consensus       232 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------  286 (516)
T PRK13383        232 LGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-------------------------  286 (516)
T ss_pred             HHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-------------------------
Confidence            9877888999999987765 89999999999999999999999988764321100                         


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccC
Q 006115          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  439 (660)
                                ..        ...+++|.+++||+++++++.+.|.+.++.++++.||+||++..+...........+++|
T Consensus       287 ----------~~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  348 (516)
T PRK13383        287 ----------AR--------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVG  348 (516)
T ss_pred             ----------cc--------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCccc
Confidence                      00        001489999999999999999999999999999999999998766554433233457899


Q ss_pred             CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCee
Q 006115          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       440 ~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      .|+++++++|++ +++.  +++.|+.|||+++|+.++.||++++.   ..+.+|||+|||+|++|++|++++.||.+|+|
T Consensus       349 ~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i  422 (516)
T PRK13383        349 KPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMI  422 (516)
T ss_pred             CCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEeccccceE
Confidence            999999999998 5554  55567899999999999999998753   33468999999999999999999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006115          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      ++ +|.+|+|.+||+.|.+||.|.++++++.++.   +.+.++|+++++..        .        +        .+.
T Consensus       423 ~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------~~~  477 (516)
T PRK13383        423 IS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG--------V--------D--------AAQ  477 (516)
T ss_pred             EE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------C--------HHH
Confidence            96 8999999999999999999999999997644   46788888765320        0        0        123


Q ss_pred             HHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      |+++++ ++++.|++|..+.+++      .+|+|++||++|++|.
T Consensus       478 l~~~~~-~~l~~~~~p~~i~~v~------~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        478 LRDYLK-DRVSRFEQPRDINIVS------SIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHHHHH-HhcccCCCCcEEEEeC------CCCCCCCCcCcHHHhC
Confidence            344443 6788999999999884      4699999999999873

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-58  Score=510.95  Aligned_cols=515  Identities=22%  Similarity=0.283  Sum_probs=394.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      +.++.++|+++++++|+++|++..    +     +++||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            357999999999999999999863    3     479999999999999999984 799999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHH--HHHH--------
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE--QKEM--------  189 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~--------  189 (660)
                      ||+++|++++|++|.++.+.+.++++.++++++++++.....+..... . .....++........  ....        
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVF-K-TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhh-h-cCcceEEEecccccccccccccccchhhh
Confidence            999999999999999999999999999999999998764433322111 0 111122211100000  0000        


Q ss_pred             -----HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCC
Q 006115          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (660)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (660)
                           .........++.+................++++++++|||||||.||+|.++|.++...+......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                 000000111222222222111112233567899999999999999999999999998876543322211  0134


Q ss_pred             CCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       265 ~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      .++.++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|+++..+......         
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---------  319 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF---------  319 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence            4678889999999998765 5566788888777643  788999999999999999999999988642100         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCC
Q 006115          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~  421 (660)
                                                  ...++        +++|.+++||+++++.+.+.|++.+|+++++.||+||++
T Consensus       320 ----------------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        320 ----------------------------QELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             ----------------------------ccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                        00111        389999999999999999999998899999999999999


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceE
Q 006115          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~  501 (660)
                      ..++.+..+.....+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            877766554444457899999999999998 5543  4566789999999999999999999999988889999999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006115          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      +++++|.+++.||.+|+|++ +|.+++|.+||++|.+||.|.+++|++.++.   ..++++++..+..         .  
T Consensus       441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~---------~--  508 (560)
T PRK08974        441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS---------L--  508 (560)
T ss_pred             EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC---------C--
Confidence            99999999999999999997 7999999999999999999999999987654   2566666544321         0  


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006115          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~  649 (660)
                            ..        +.+.++++ +.|+.|.+|..+.++      +.+|+|++||++|+.|+++..++.+
T Consensus       509 ------~~--------~~l~~~l~-~~l~~~~~P~~~~~~------~~lP~t~~GK~~r~~l~~~~~~~~~  558 (560)
T PRK08974        509 ------TE--------EELITHCR-RHLTGYKVPKLVEFR------DELPKSNVGKILRRELRDEARAKVD  558 (560)
T ss_pred             ------CH--------HHHHHHHH-hhcccccCCcEEEEh------hhCCCCCCCcEeHHHHHHHHHhhhc
Confidence                  11        12333333 678899999999987      4469999999999999998876554

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3.9e-58  Score=504.97  Aligned_cols=483  Identities=19%  Similarity=0.202  Sum_probs=391.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      +++.++|+++|+.+|+++++...    +     +++||.||.+.+.++|.+|.+.|+++||+|+++++|+.+++++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            56889999999999999998754    2     47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++..+.+.+..+++.++++++++++......        ... .+                     ..++
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~---------------------~~~~  122 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PV---------------------ITLD  122 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cE---------------------EehH
Confidence            99999999999999999999999999999999987641100        000 01                     1111


Q ss_pred             HHHhcC--ccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          202 EFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       202 ~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      ++....  ...........++++++++|||||||.||+|.++|.++...+......+     .+..+++++...|++|..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~  197 (503)
T PRK04813        123 ELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDL  197 (503)
T ss_pred             HhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhH
Confidence            111110  0111112345678899999999999999999999999998887766555     788899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      ++...+.++..|+++++++.    ++..+++.++++++|++.++|+++..+.......                      
T Consensus       198 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~----------------------  255 (503)
T PRK04813        198 SVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN----------------------  255 (503)
T ss_pred             hHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC----------------------
Confidence            88778888999999998874    7899999999999999999999998764321100                      


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---  431 (660)
                                             ....+++|.++++|+++++.+.+.+.+.+ ++++++.||+||++..++......   
T Consensus       256 -----------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~  312 (503)
T PRK04813        256 -----------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEML  312 (503)
T ss_pred             -----------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEeccccc
Confidence                                   00114899999999999999999999988 789999999999987554433211   


Q ss_pred             -ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--CC--ccccCceEEECCC
Q 006115          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILPN  506 (660)
Q Consensus       432 -~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--~g--~~~TGDl~~~~~~  506 (660)
                       .....++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.  +|  ||+|||+|++ .+
T Consensus       313 ~~~~~~~~g~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~  388 (503)
T PRK04813        313 DQYKRLPIGYAKPDSPLLIID-EEGT--KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-ED  388 (503)
T ss_pred             ccCCCCcccccCCCCEEEEEC-CCCC--CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eC
Confidence             12335799999999999998 5554  445678999999999999999999999988872  44  9999999999 89


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006115          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |++++.||.+|+|++ +|++++|.+||+.+.++|+|.+++|++.++.   +.+++++++.++..                
T Consensus       389 g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------  451 (503)
T PRK04813        389 GLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDF----------------  451 (503)
T ss_pred             CeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccc----------------
Confidence            999999999999996 8999999999999999999999999986543   47888888776320                


Q ss_pred             hccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                          +....+.++++++++ .+++.|.+|+.+.+++      .+|+|++||++|++|++++.
T Consensus       452 ----~~~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        452 ----EREFELTKAIKKELK-ERLMEYMIPRKFIYRD------SLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             ----cccchhHHHHHHHHH-hhCccccCCeEEEEec------cCCCCCCCCCcHHHHHHHhc
Confidence                001123344555554 6799999999999874      46999999999999998875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-59  Score=616.30  Aligned_cols=485  Identities=20%  Similarity=0.241  Sum_probs=399.2

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++.++|.++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++|++|+++++|++++++++
T Consensus      2000 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~ 2070 (5163)
T PRK12316       2000 PRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVAL 2070 (5163)
T ss_pred             CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34468999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|++|.++.+++.++++.+++++++++......+...     .... .+.++..                
T Consensus      2071 lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~---------------- 2128 (5163)
T PRK12316       2071 LAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD---------------- 2128 (5163)
T ss_pred             HHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch----------------
Confidence            99999999999999999999999999999999999988765433110     0111 1111110                


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                        ..+...  ....+.....++++++|+|||||||.||||+++|+++.+.+......+     +++++|+++.+.|++|.
T Consensus      2129 --~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 2199 (5163)
T PRK12316       2129 --AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFD 2199 (5163)
T ss_pred             --hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHH
Confidence              000000  111122345789999999999999999999999999999998887777     78999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .++..++.++..|+++++.+.   ++..+++.++++++|+++++|+++..|.......                      
T Consensus      2200 ~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------- 2257 (5163)
T PRK12316       2200 GAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD---------------------- 2257 (5163)
T ss_pred             HHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc----------------------
Confidence            888888999999999977653   7899999999999999999999999886532110                      


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCcc-
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC-  433 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~-  433 (660)
                                              ....+||.+++|||++++++.+.|.+.+ +..++|.||+||++..++........ 
T Consensus      2258 ------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 2313 (5163)
T PRK12316       2258 ------------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDP 2313 (5163)
T ss_pred             ------------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccc
Confidence                                    0013899999999999999999988766 68899999999998876554322211 


Q ss_pred             ---ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceEE
Q 006115          434 ---MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQ  502 (660)
Q Consensus       434 ---~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--------~g~~~TGDl~~  502 (660)
                         ...++|+|+++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.        ++||+|||+|+
T Consensus      2314 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~ 2390 (5163)
T PRK12316       2314 CGAAYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLAR 2390 (5163)
T ss_pred             cCCCcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEE
Confidence               125799999999999998 5554  556778999999999999999999999999982        25999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006115          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      +++||.++++||+||+||+ +|++|+|.|||.+|.+||+|.+|+|++.++.  +.++|+|++..+..             
T Consensus      2391 ~~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~------------- 2456 (5163)
T PRK12316       2391 YRADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAE------------- 2456 (5163)
T ss_pred             EcCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCc-------------
Confidence            9999999999999999998 7999999999999999999999999986543  48999999876420             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                                 ...+.|+++++ ..||.|++|..++++      +.+|+|++||++|++|.+..
T Consensus      2457 -----------~~~~~l~~~l~-~~Lp~~~vP~~~~~l------~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2457 -----------DLLAELRAWLA-ARLPAYMVPAHWVVL------ERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             -----------cCHHHHHHHHH-hhCchhcCcceEeee------cccCCCCCCccCHhhcCCCc
Confidence                       01223444443 789999999999987      45699999999999997653

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.4e-59  Score=615.01  Aligned_cols=501  Identities=21%  Similarity=0.258  Sum_probs=411.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.++|.++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++|++|+++++|++++++++|
T Consensus      4549 ~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 4619 (5163)
T PRK12316       4549 ATRCVHQLVAERARMTPDAVAVVFD---E------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLL 4619 (5163)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4578999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...     ... .++.++...                
T Consensus      4620 avl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 4677 (5163)
T PRK12316       4620 AVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP-----DGL-ASLALDRDE---------------- 4677 (5163)
T ss_pred             HHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc-----cCc-ceEeecchh----------------
Confidence            9999999999999999999999999999999999987655433110     011 111111100                


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                        ++  .......+.....++++++++|||||||.||||+++|+++++.+......+     +++++|+++++.|++|..
T Consensus      4678 --~~--~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 4748 (5163)
T PRK12316       4678 --DW--EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERY-----ELTPDDRVLQFMSFSFDG 4748 (5163)
T ss_pred             --hc--ccCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhc-----CCCcCCeEEEecCcchhh
Confidence              00  000111223345689999999999999999999999999999998887776     789999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +...++.++..|+++++++.   ++..+++.++++++|+++++|++++.|.+......                      
T Consensus      4749 ~~~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~---------------------- 4806 (5163)
T PRK12316       4749 SHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG---------------------- 4806 (5163)
T ss_pred             HHHHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc----------------------
Confidence            98888999999999999874   78999999999999999999999998865321100                      


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                              ..++||.+++|||++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus      4807 ------------------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 4862 (5163)
T PRK12316       4807 ------------------------EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDAC 4862 (5163)
T ss_pred             ------------------------CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEccccccc
Confidence                                    114899999999999999997776655 789999999999998776554322    


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceEEE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--------~g~~~TGDl~~~  503 (660)
                      .....++|+|+++++++|+| +++.  +++.|+.|||+|+|+.+++||+++++.|.+.|.        .+||+|||+|++
T Consensus      4863 ~~~~~~iG~p~~~~~~~i~d-~~~~--~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 4939 (5163)
T PRK12316       4863 GAAYMPIGTPLGNRSGYVLD-GQLN--PLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARY 4939 (5163)
T ss_pred             CCCCCcccccccCCEEEEEC-CCCC--cCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEE
Confidence            12346899999999999998 5544  556778999999999999999999999999983        259999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      +++|.++++||.|++||+ +|++|+|.+||++|.+||.|.+|+|++.++.  ..++|+|++......             
T Consensus      4940 ~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~------------- 5005 (5163)
T PRK12316       4940 RADGVIDYLGRVDHQVKI-RGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALA------------- 5005 (5163)
T ss_pred             CCCCcEEEeccccceEee-ccEeecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCccccc-------------
Confidence            999999999999999998 7999999999999999999999999986543  478999988754210             


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 006115          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE  653 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~  653 (660)
                         ...+....+.+.|+++++ ..||.|++|..++++      +.+|+|++||++|++|.+.+...++..|.
T Consensus      5006 ---~~~~~~~~~~~~l~~~l~-~~lp~y~vP~~~~~~------~~lP~t~~GKvdR~~L~~~~~~~~~~~~~ 5067 (5163)
T PRK12316       5006 ---DADEAQAELRDELKAALR-ERLPEYMVPAHLVFL------ARMPLTPNGKLDRKALPQPDASLLQQAYV 5067 (5163)
T ss_pred             ---cccccchhhHHHHHHHHh-ccCchhhCCcceeec------ccCCCCCCcccChhhcCCccccccccccC
Confidence               111223345566667765 899999999999887      45699999999999999887666555554

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=9.1e-59  Score=499.18  Aligned_cols=425  Identities=20%  Similarity=0.231  Sum_probs=344.8

Q ss_pred             EeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEc
Q 006115           77 KTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ  155 (660)
Q Consensus        77 ~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~  155 (660)
                      +.|.||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             cchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCC
Q 006115          156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDP  235 (660)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p  235 (660)
                      +......                ....                .         .   ......++++++++|||||||.|
T Consensus       100 ~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~P  135 (452)
T PRK07445        100 DQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQI  135 (452)
T ss_pred             Ccccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCCC
Confidence            6532100                0000                0         0   00123568999999999999999


Q ss_pred             ceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCe
Q 006115          236 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (660)
Q Consensus       236 K~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (660)
                      |+|++||++++..+......+     ++.+ ++.++++|++|.+|+...+.++..|+++++.+. ...........+++|
T Consensus       136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t  209 (452)
T PRK07445        136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF  209 (452)
T ss_pred             cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence            999999999988877765554     4444 467889999999999878888999999998864 233333444578899


Q ss_pred             EEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCC
Q 006115          315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP  394 (660)
Q Consensus       315 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~  394 (660)
                      +++++|+++..+++...                                        ..+        ++||.+++||++
T Consensus       210 ~~~~vP~~l~~l~~~~~----------------------------------------~~l--------~~l~~i~~gG~~  241 (452)
T PRK07445        210 FLSLVPTQLQRLLQLRP----------------------------------------QWL--------AQFRTILLGGAP  241 (452)
T ss_pred             EEEehHHHHHHHHhhCh----------------------------------------hhh--------hcceEEEECCcc
Confidence            99999999998764100                                        001        389999999999


Q ss_pred             CCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC
Q 006115          395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (660)
Q Consensus       395 l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~  473 (660)
                      +++++.+.+++ +++++++.||+||++..++...+.. .....++|+|+++++++|++           ++.|||+|+|+
T Consensus       242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~  309 (452)
T PRK07445        242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQ  309 (452)
T ss_pred             CCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCC
Confidence            99999988876 5899999999999986554433322 22346899999999999872           35799999999


Q ss_pred             CcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC
Q 006115          474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK  553 (660)
Q Consensus       474 ~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~  553 (660)
                      .++.||+++...     .+|||+|||+|++|+||++++.||.||+|+. +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus       310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~  383 (452)
T PRK07445        310 SLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDP  383 (452)
T ss_pred             ccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCc
Confidence            999999975421     4799999999999999999999999999996 8999999999999999999999999998765


Q ss_pred             ---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccc
Q 006115          554 ---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT  630 (660)
Q Consensus       554 ---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t  630 (660)
                         +.++|+++..++..                 +        .+++.++++ ..|+.|++|+.+++++      .+|+|
T Consensus       384 ~~g~~~~a~vv~~~~~~-----------------~--------~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~t  431 (452)
T PRK07445        384 HWGEVVTAIYVPKDPSI-----------------S--------LEELKTAIK-DQLSPFKQPKHWIPVP------QLPRN  431 (452)
T ss_pred             CCCcEEEEEEEeCCCCC-----------------C--------HHHHHHHHH-HhCCcccCCeEEEEec------CCCCC
Confidence               36888888765320                 1        123334443 6799999999999884      45999


Q ss_pred             cccccchHHHHHHHHHHHH
Q 006115          631 ATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       631 ~~GKv~R~~l~~~~~~~l~  649 (660)
                      ++||++|++|++++.++|+
T Consensus       432 ~~GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        432 PQGKINRQQLQQIAVQRLG  450 (452)
T ss_pred             CCcccCHHHHHHHHHHhhC
Confidence            9999999999999988875

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-58  Score=505.49  Aligned_cols=484  Identities=18%  Similarity=0.185  Sum_probs=372.8

Q ss_pred             HHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEe
Q 006115           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (660)
Q Consensus        50 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  129 (660)
                      .+|+++|+++|+.+.   +..    +++||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467789999999864   321    5899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCcc
Q 006115          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (660)
Q Consensus       130 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (660)
                      |+++.++++++.++++.++++++++++........ ...   .....+.+....           .....+++...... 
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VGA---DLPLRLSFGGEI-----------DGFGSFEAALAGAG-  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hhh---ccceEEEecCcc-----------cccccHHHHhcccC-
Confidence            99999999999999999999999998754322111 110   111111111100           01112333222110 


Q ss_pred             CCccCCCCCCCCeEEEEecCCCCCCCceeee--ccHhHHHHhhh----cccccccccCCCCCCcEEEEecChhhHHHHHH
Q 006115          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSG----VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (660)
Q Consensus       210 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~--th~~l~~~~~~----~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~  283 (660)
                       .   .....++.++|+|||||||.||+|.+  +|.++......    ....+     .+..+++++..+|++|.+++..
T Consensus       142 -~---~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        142 -P---RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             -C---CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence             0   01122357999999999999999995  45554432211    11122     6788999999999999998866


Q ss_pred             HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCC
Q 006115          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (660)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (660)
                      ....+..|+++++.+. ++..+++.++++++|++.++|+++..+........                            
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------  264 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR----------------------------  264 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------
Confidence            5556678999988775 89999999999999999999999988764211100                            


Q ss_pred             CCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCc
Q 006115          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (660)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  442 (660)
                             ...++        +++|.++++|+++++++.+.+++.++.++++.||+||+++++...........+++|+|+
T Consensus       265 -------~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  329 (501)
T PRK13390        265 -------TRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV  329 (501)
T ss_pred             -------ccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence                   00011        388999999999999999999998899999999999998765443322223347899999


Q ss_pred             cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc---CCccccCceEEECCCCcEEEEeccCCee
Q 006115          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       443 ~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~---~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      ++ .+++++ +++.  +++.|+.|||+|+|+.++.||+++++.+...|.   ++|++|||+|++|++|.+++.||.+|+|
T Consensus       330 ~g-~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i  405 (501)
T PRK13390        330 LG-DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMI  405 (501)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccce
Confidence            99 689988 5554  456789999999999999999999999988873   6899999999999999999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006115          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      ++ +|.+|+|.+||++|.+||.|.+|+|++.+++   +.+++++++..+..                 ...    ...++
T Consensus       406 ~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~-----------------~~~----~~~~~  463 (501)
T PRK13390        406 IS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR-----------------GSD----ELARE  463 (501)
T ss_pred             eE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCC-----------------cch----hhHHH
Confidence            96 8999999999999999999999999998765   37888888765320                 001    11234


Q ss_pred             HHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      |.++++ ..|+.|++|..+++++      .+|+|++||++|++|+
T Consensus       464 l~~~~~-~~l~~~~~P~~~~~~~------~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        464 LIDYTR-SRIAHYKAPRSVEFVD------ELPRTPTGKLVKGLLR  501 (501)
T ss_pred             HHHHHH-HhcccCCCCcEEEEec------cCCCCCccceehhhcC
Confidence            555554 6799999999999984      4699999999999874

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-58  Score=500.87  Aligned_cols=454  Identities=26%  Similarity=0.282  Sum_probs=368.7

Q ss_pred             HHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeec
Q 006115           52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL  131 (660)
Q Consensus        52 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i  131 (660)
                      +++.++++|++..    +     +++||.||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            3457889998764    3     58999999999999999996     46999999999999999999999999999999


Q ss_pred             CCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCC
Q 006115          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  211 (660)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (660)
                      ++..+.+++..+++.+++++++++.....          ..+........               ..++           
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~-----------  119 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSW-----------  119 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------cccc-----------
Confidence            99999999999999999999999764210          00000000000               0000           


Q ss_pred             ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhc
Q 006115          212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRR  290 (660)
Q Consensus       212 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~  290 (660)
                      .......++++++++|||||||.||+|.++|+++...+..+...+     ++..++++++.+|++|..|+.. ++.+++.
T Consensus       120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  194 (471)
T PRK07787        120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI  194 (471)
T ss_pred             ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence            011123578999999999999999999999999999887766655     6788999999999999999876 6677999


Q ss_pred             CcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 006115          291 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (660)
Q Consensus       291 G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (660)
                      |+++++.+. ++..+++.++ +++|+++++|+++..+.+.....                                    
T Consensus       195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~------------------------------------  237 (471)
T PRK07787        195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA------------------------------------  237 (471)
T ss_pred             CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc------------------------------------
Confidence            999988875 8999999999 99999999999998876421000                                    


Q ss_pred             HHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEe
Q 006115          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (660)
Q Consensus       370 ~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  449 (660)
                                ...+++|.+++||+++++++.+.+.+.++.++++.||+||++...+..... ...++++|.|+++++++|
T Consensus       238 ----------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i  306 (471)
T PRK07787        238 ----------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADG-ERRPGWVGLPLAGVETRL  306 (471)
T ss_pred             ----------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCC-cccCCcccccCCCcEEEE
Confidence                      001389999999999999999999998899999999999998765443332 233478999999999999


Q ss_pred             eecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEecc-CCeeEcCCCeee
Q 006115          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYV  527 (660)
Q Consensus       450 v~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~-~d~i~~~~G~~v  527 (660)
                      ++ +++...+.+.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||.+++.||. +|+++. +|.+|
T Consensus       307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v  384 (471)
T PRK07787        307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI  384 (471)
T ss_pred             EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence            99 66554443333479999999999999999999999998 5899999999999999999999996 889995 89999


Q ss_pred             cchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHC
Q 006115          528 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  604 (660)
Q Consensus       528 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  604 (660)
                      +|.+||+.|..+|.|.+++|++.++.   ..+++++++....                  +.        +.+.+++ ++
T Consensus       385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~--------~~l~~~l-~~  437 (471)
T PRK07787        385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------AA--------DELIDFV-AQ  437 (471)
T ss_pred             CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------CH--------HHHHHHH-Hh
Confidence            99999999999999999999998755   3788888873321                  11        1233333 36


Q ss_pred             CCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          605 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       605 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      .|+.|++|..++++      +.+|+|++||++|++|+++
T Consensus       438 ~l~~~~~P~~i~~~------~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        438 QLSVHKRPREVRFV------DALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             hcccccCCcEEEEe------ccCCCCCCccccHHHhccC
Confidence            78999999999987      4569999999999999753

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=9.3e-59  Score=606.98  Aligned_cols=489  Identities=18%  Similarity=0.159  Sum_probs=399.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.++|.++++++||++|+++.   ++      ++||+||.++++++|++|.+.|+++|++|+|++++++++++++|
T Consensus      3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691       3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred             cccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3468999999999999999999986   43      69999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccc-cCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |++++|++++|++|.++.+++.++++.+++++++++............... .....++..+.                 
T Consensus      3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3851 (4334)
T PRK05691       3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------------- 3851 (4334)
T ss_pred             HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----------------
Confidence            999999999999999999999999999999999999875443211111000 00011111111                 


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                          ..........+.....+++.||++|||||||.||||+++|+++++.+.+....+     +++++|+++...++.+.
T Consensus      3852 ----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691       3852 ----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred             ----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence                111111111222345689999999999999999999999999999998887777     89999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+...++.++..|+++++++.    ++..+.+.++++++|++.++|+++..++.....                      
T Consensus      3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---------------------- 3980 (4334)
T PRK05691       3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---------------------- 3980 (4334)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----------------------
Confidence            999889999999999999874    788999999999999999999999887542100                      


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCc-
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-  432 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~-  432 (660)
                                                ..++||.+++|||++++++.+.|.+.+ ++.++|.||+||++..++....... 
T Consensus      3981 --------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691       3981 --------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred             --------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence                                      013899999999999999999887765 7899999999999987765443221 


Q ss_pred             --cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceEE
Q 006115          433 --CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQ  502 (660)
Q Consensus       433 --~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~--------~g~~~TGDl~~  502 (660)
                        ....++|+|++++.+.|+| +.+.  +++.|..|||+|+|+.+++||+++++.|.+.|.        ++||+|||+|+
T Consensus      4035 ~~~~~~~iG~p~~~~~~~v~d-~~~~--~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4035 TRGSYLPIGSPTDNNRLYLLD-EALE--LVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             ccCCcCCCCCccCCCEEEEEC-CCCC--CCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCccee
Confidence              1224699999999999998 5444  555678999999999999999999999999982        36999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC--CCCeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006115          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LKSMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      +++||.++++||.|++||+ +|++|.+.|||++|.++|+|.+|+|+...  ..+.++|+++......             
T Consensus      4112 ~~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~------------- 4177 (4334)
T PRK05691       4112 RRSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL------------- 4177 (4334)
T ss_pred             ecCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc-------------
Confidence            9999999999999999998 79999999999999999999999987543  2357999998765420             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                          ...+..    +.|+..+ ++.||.|++|..++++      +.+|+|++|||+|++|.+.
T Consensus      4178 ----~~~~~~----~~l~~~l-~~~Lp~ymvP~~~~~~------~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4178 ----AQGALL----ERIKQRL-RAELPDYMVPLHWLWL------DRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             ----cchHHH----HHHHHHH-HhhCChhhcCcceeec------ccCCCCCCCcccHhhcCCC
Confidence                112222    3344444 3789999999999887      4569999999999999764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.8e-57  Score=545.29  Aligned_cols=496  Identities=18%  Similarity=0.173  Sum_probs=383.8

Q ss_pred             CCcHHHHHHHHHHhCC-CCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~p-d~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..++.+.+.++++++| ++.++.+.   ++     +++||+||.++++++|+.|++ |+++||+|+++++|+++++++++
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~l  700 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFF  700 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHH
Confidence            4678888888888886 45665432   22     579999999999999999975 99999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhh-ccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      ||+++|++++|++|..+.+++.+++++++++++++++....... ............++.+++....        .....
T Consensus       701 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~  772 (1140)
T PRK06814        701 ALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ--------IGLAD  772 (1140)
T ss_pred             HHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc--------CChHH
Confidence            99999999999999999999999999999999999876543221 0001111222234443321100        00000


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      .+.+...... .........++|+++++|||||||.||+|.+||+++.+.+......+     ++..+|++++.+|++|.
T Consensus       773 ~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~  846 (1140)
T PRK06814        773 KIKGLLAGRF-PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFHS  846 (1140)
T ss_pred             HHHHHhhccC-CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHHH
Confidence            0111111110 11111134689999999999999999999999999998888776666     78899999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      +++.. .+.++..|+++++.+.  +...+.+.++++++|+++++|+++..+.+...                        
T Consensus       847 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~------------------------  902 (1140)
T PRK06814        847 FGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH------------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc------------------------
Confidence            99854 6778999999998864  66778899999999999999999887754210                        


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcccc
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (660)
                                     ..+        .+++|.+++||+++++++.+.+.+.+++++++.||+||++..+....... ...
T Consensus       903 ---------------~~~--------~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~  958 (1140)
T PRK06814        903 ---------------PYD--------FRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NKA  958 (1140)
T ss_pred             ---------------ccc--------ccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CCC
Confidence                           001        14899999999999999999999989999999999999998766544322 334


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhh-hcccCCccccCceEEECCCCcEEEEec
Q 006115          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       436 ~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~-~~f~~g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      +++|+|++++++++++.+ +      .++.|||+++|+.++.||+++++... ..+.+|||+|||+|++|+||++++.||
T Consensus       959 ~~vG~p~~g~~~~~~~~~-~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR 1031 (1140)
T PRK06814        959 GTVGRLLPGIEYRLEPVP-G------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGR 1031 (1140)
T ss_pred             CcCCccCCCCeEEEeecC-C------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEec
Confidence            789999999999998732 1      24679999999999999998764332 223689999999999999999999999


Q ss_pred             cCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHH
Q 006115          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (660)
Q Consensus       515 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (660)
                      .||+|++ +|++|+|.+||+++.+||.|.+|+|++.+++.   .+++++...+ .                  +      
T Consensus      1032 ~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~-~------------------~------ 1085 (1140)
T PRK06814       1032 AKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD-A------------------T------ 1085 (1140)
T ss_pred             ccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC-c------------------C------
Confidence            9999996 89999999999999999999999999977553   5555543221 1                  1      


Q ss_pred             HHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          592 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       592 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                        .+++.+++++..++.|++|+.+.+++      .+|+|++||++|++|++++.+.+
T Consensus      1086 --~~~l~~~~~~~~l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1086 --RAAFLAHAKAAGASELMVPAEIITID------EIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             --HHHHHHHHHHcCCCcccCCcEEEEec------CcCCCCCCCCcHHHHHHHHHHhh
Confidence              12334444445799999999999874      46999999999999998877654

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.1e-57  Score=499.38  Aligned_cols=507  Identities=25%  Similarity=0.285  Sum_probs=380.5

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      +++.+.|+..++.+|+++|+.+.   +      ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            67889999999999999999764   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++..+.+++..+++.++++.++++......+..... ..+.. ..+.++.....   ..........++.
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDVDDPE---YPGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEecCccc---cccCCCcccccHH
Confidence            9999999999999999999999999999999999877654432211 11111 12222211100   0000111233456


Q ss_pred             HHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHH
Q 006115          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  281 (660)
                      ++............+...+++++++|||||||.||+|+++|+++...+......+     .+..++++++.+|++|..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            6654432211111223456789999999999999999999998776655543333     57788899999999999988


Q ss_pred             HHHHHH-hhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Q 006115          282 VIEEYF-FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~~~~-l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.. +..|.++++...++..+++.++++++|++.++|+++..|++.......                         
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------  293 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA-------------------------  293 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc-------------------------
Confidence            765444 444444444334999999999999999999999999988653111000                         


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC---------
Q 006115          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  431 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---------  431 (660)
                                          ...+++.++++|+.+++.+.+.+++ +++++++.||+||+++.+..+....         
T Consensus       294 --------------------~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        294 --------------------GIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             --------------------CCccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccc
Confidence                                0014556788999999999998876 4899999999999876554432111         


Q ss_pred             -ccccCccCCCcc-CeeEEeeecCCCCC-CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006115          432 -MCMVGTAGPVSV-YSELRLEEVPEMGY-SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (660)
Q Consensus       432 -~~~~~~~G~~~~-~~~v~iv~~~~~~~-~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~  508 (660)
                       .....+.|.+.+ +..++++| ++++. .+.+.++.|||+++|+.++.||+++++.+...|.+|||+|||+|++|++|.
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d-~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~  431 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLD-PDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGY  431 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEc-CCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCcc
Confidence             011234565554 34577777 44332 222223479999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      ++++||.+|+|++ +|.+|+|.+||+.|.+||.|.+|+|++.++.   ..+++++++.++..        .        +
T Consensus       432 l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~--------~--------~  494 (545)
T PRK08162        432 IKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGAS--------A--------T  494 (545)
T ss_pred             EEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCC--------C--------C
Confidence            9999999999996 8999999999999999999999999987644   36888888775420        0        1


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                              .+++.++++ +.|+.|.+|..+++.       .+|+|++||++|+.|++++.+.
T Consensus       495 --------~~~l~~~~~-~~l~~~~~P~~~~~~-------~iP~t~~gK~~r~~l~~~~~~l  540 (545)
T PRK08162        495 --------EEEIIAHCR-EHLAGFKVPKAVVFG-------ELPKTSTGKIQKFVLREQAKSL  540 (545)
T ss_pred             --------HHHHHHHHH-HhcccccCCcEEEec-------ccCCCCCcCCcHHHHHHHHhhh
Confidence                    123334443 678999999988653       3589999999999999886553

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-57  Score=494.16  Aligned_cols=449  Identities=24%  Similarity=0.291  Sum_probs=369.5

Q ss_pred             CcHHHHH-HHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           42 NTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l-~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +++.+.+ ..+|+++||++|+...    +     +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la   72 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA   72 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            3444544 5668899999999753    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.++++++++++.... +..        +...                      .+
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~  121 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HL  121 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------cc
Confidence            9999999999999999999999999999999998776422 100        0000                      00


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .     . ..........++++++++|||||||.||+|.+||++++..+......+     +...+++++..+|++|.+|
T Consensus       122 ~-----~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g  190 (458)
T PRK09029        122 Q-----L-VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSG  190 (458)
T ss_pred             c-----c-ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhh
Confidence            0     0 001112234678999999999999999999999999999988776666     7888999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Q 006115          281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      +...+.++..|+++++.+.  ..+...+  .++|.+..+|+++..+......                            
T Consensus       191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------  238 (458)
T PRK09029        191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------  238 (458)
T ss_pred             hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence            8777778999999998763  5566666  4799999999998877542110                            


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCC
Q 006115          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                                           ..++|.+++||+++++.+.+.+.+ +|.++++.||+||++...+.....   ...++|.
T Consensus       239 ---------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G~  293 (458)
T PRK09029        239 ---------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRAD---GLAGVGS  293 (458)
T ss_pred             ---------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCCC---CCCCCCC
Confidence                                 037999999999999999998876 499999999999998765543322   1256999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeE
Q 006115          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       441 ~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      |++++++++++              |||+++|+.++.||+++++.+.....+|||+|||+|++| +|.+++.||.+|+|+
T Consensus       294 ~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~  358 (458)
T PRK09029        294 PLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFF  358 (458)
T ss_pred             CCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEeccccccee
Confidence            99999999887              899999999999999998887665678999999999999 999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006115          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|.+|+|.+||++|++||.|.+|+|++.++.   +.++++|++....                  +        .+.|
T Consensus       359 ~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~--------~~~l  411 (458)
T PRK09029        359 S-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA------------------A--------VVNL  411 (458)
T ss_pred             e-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc------------------C--------HHHH
Confidence            6 8999999999999999999999999998765   3688888766321                  1        1234


Q ss_pred             HHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      +++++ .+||.|++|..+.+++.      +|+|.+||++|+.|+++++..
T Consensus       412 ~~~~~-~~l~~~~~P~~~~~~~~------~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        412 AEWLQ-DKLARFQQPVAYYLLPP------ELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             HHHHH-hhchhccCCeEEEEecc------cccCcCCCcCHHHHHHHHHhc
Confidence            44443 78999999999998854      479999999999999888754

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-56  Score=493.54  Aligned_cols=495  Identities=20%  Similarity=0.184  Sum_probs=384.7

Q ss_pred             HHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeE
Q 006115           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (660)
Q Consensus        49 ~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  128 (660)
                      ..+|+++||++|+++.   ++.    +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4567889999999864   221    579999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCc
Q 006115          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (660)
Q Consensus       129 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (660)
                      +++++.++.+.+.++++.++++.++++........+.. .........+.......         ......+.+......
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  146 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALL-KQCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP  146 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHH-hcCCCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence            99999999999999999999999999987665443221 12222333333332110         011223343332211


Q ss_pred             cCCccCCCCCCCCeEEEEecCCCCCCCceeeec--cHhHHHHh---hhcccccccccCCCCCCcEEEEecChhhHHHHHH
Q 006115          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT--HETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (660)
Q Consensus       209 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~t--h~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~  283 (660)
                          .......++.++++|||||||.||+|.++  |.++....   ......+     .+..+++++..+|++|..++..
T Consensus       147 ----~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        147 ----ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             ----CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence                11112345678999999999999999954  65543322   2222233     5678899999999999999887


Q ss_pred             HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCC
Q 006115          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (660)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (660)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......                            
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------  269 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------  269 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence            7778899999998876 99999999999999999999999988754211100                            


Q ss_pred             CCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCc
Q 006115          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (660)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  442 (660)
                             +..        ..+++|.+++||+++++++.+.+++.+|..+++.||+||++.++...........+++|.|+
T Consensus       270 -------~~~--------~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        270 -------DKY--------DLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             -------ccC--------CccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                   000        11489999999999999999999998899999999999999876544333233447899999


Q ss_pred             cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c-CCccccCceEEECCCCcEEEEeccCCeeE
Q 006115          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       443 ~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~-~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      ++ .+++++ +++.  +++.|+.|||+++|+ ++.||+++++.+...| . ++||+|||+|+++++|.+++.||.+|+++
T Consensus       335 ~g-~~~i~d-~~~~--~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~  409 (511)
T PRK13391        335 FG-DLHILD-DDGA--ELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII  409 (511)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence            99 688888 5543  445678999999999 8889999999998888 3 39999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006115          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|.++++.+||++|.+||.|.+|+|++.++..   .+++++++..+..                 ...+    +.++|
T Consensus       410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~----~~~~l  467 (511)
T PRK13391        410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD-----------------PGPA----LAAEL  467 (511)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCC-----------------cccc----hHHHH
Confidence            6 89999999999999999999999999876553   6778887765320                 0111    22345


Q ss_pred             HHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .++++ ..||.|++|..|.+++      ++|+|++||++|+.|++.|..
T Consensus       468 ~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        468 IAFCR-QRLSRQKCPRSIDFED------ELPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HHHHH-hhcccCcCCcEEEEee------cCCCCCccceeHHHHHHHhhc
Confidence            55554 7899999999999874      459999999999999998753

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-57  Score=505.33  Aligned_cols=503  Identities=21%  Similarity=0.257  Sum_probs=380.0

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChh
Q 006115           33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (660)
Q Consensus        33 ~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~  112 (660)
                      .+|....+++++.++|...++++|+..++      +.+++.++.+||.||..++.++|.+|.+.|+++||+|+++++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~   85 (579)
T PRK09192         12 SLPRRYADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG   85 (579)
T ss_pred             cccccccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch
Confidence            45566678899999999999988865443      333344578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCeEeecCCCCC-------hhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHH
Q 006115          113 QWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE  185 (660)
Q Consensus       113 ~~~~~~lA~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  185 (660)
                      +++++++||+++|++++|+++..+       .+++.++++.++++++++++.....+..... .   ...+.        
T Consensus        86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~-~---~~~~~--------  153 (579)
T PRK09192         86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATH-G---NPLLH--------  153 (579)
T ss_pred             hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhc-c---ccccc--------
Confidence            999999999999999999987543       5789999999999999999876554432211 0   00000        


Q ss_pred             HHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccc-ccccccCCCC
Q 006115          186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMT  264 (660)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~  264 (660)
                                 ..++.++.... ..........++++++++|||||||.||+|+++|++++..+..... .+     ++.
T Consensus       154 -----------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~  216 (579)
T PRK09192        154 -----------VLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVR  216 (579)
T ss_pred             -----------eeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCC
Confidence                       11223222221 1111223356789999999999999999999999999988877655 44     788


Q ss_pred             CCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006115          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       265 ~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                      .+|+++.++|++|.+|+.. ++.++..|+++++.+.     ++..+++.+.++++++++.+|..+..+.......     
T Consensus       217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~-----  291 (579)
T PRK09192        217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK-----  291 (579)
T ss_pred             CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-----
Confidence            8999999999999999875 4556888998877652     6889999999999998777655555443211000     


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------Ccee
Q 006115          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLV  412 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~------~~v~  412 (660)
                                                   .....++        +++|.+++||+++++.+.+.+.+.+.      ..++
T Consensus       292 -----------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~  334 (579)
T PRK09192        292 -----------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM  334 (579)
T ss_pred             -----------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence                                         0011122        38999999999999999999888763      3489


Q ss_pred             eecCCCCCCCceecccCCCc---------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCCC
Q 006115          413 QGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (660)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~  465 (660)
                      +.||+||++..++.......                           ....++|.++|+++++|++ +++.  .++.++.
T Consensus       335 ~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~--~~~~g~~  411 (579)
T PRK09192        335 PSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGM--PLPERVV  411 (579)
T ss_pred             cccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCC--CCCCCCE
Confidence            99999999876654332110                           1124789999999999998 5544  4456689


Q ss_pred             ceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcc-
Q 006115          466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE-  543 (660)
Q Consensus       466 GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~-  543 (660)
                      |||+++|+.++.||+++ ..+.+.+ .+|||+|||+|++ ++|+++++||.+|+|++ +|++|+|.+||+.|.+||+|. 
T Consensus       412 Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~  488 (579)
T PRK09192        412 GHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRS  488 (579)
T ss_pred             EEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccC
Confidence            99999999999999999 5555555 7899999999999 89999999999999997 899999999999999999998 


Q ss_pred             -eEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecC
Q 006115          544 -DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR  620 (660)
Q Consensus       544 -~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~  620 (660)
                       +|+|++.+++  ..++++++.....                    ....+.+.+.+.+.+.    +.+.+|..+.++. 
T Consensus       489 ~~~~v~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~-  543 (579)
T PRK09192        489 GDAAAFSIAQENGEKIVLLVQCRISD--------------------EERRGQLIHALAALVR----SEFGVEAAVELVP-  543 (579)
T ss_pred             CcEEEEEeccCCCeeEEEEEEecCCC--------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeC-
Confidence             8999987654  3677777765421                    1111223333333221    2356676677763 


Q ss_pred             CCCCCCCccccccccchHHHHHHHHH
Q 006115          621 PFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       621 ~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         .+.+|+|++||++|++|+++|..
T Consensus       544 ---~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        544 ---PHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             ---CCCcCCCCCcchhHHHHHHHHHc
Confidence               14579999999999999999865

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-56  Score=494.59  Aligned_cols=503  Identities=20%  Similarity=0.210  Sum_probs=389.9

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHH
Q 006115           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~  122 (660)
                      |+.++|.++|+++||++|+.+.    +     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            6999999999999999999874    3     589999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHH
Q 006115          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|+++.++.+++.++++.+++++++++......+.+. .......+.++.++......      ......++.+
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEV-LPRLPKLRTLVVVEDGSGND------LLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHH-hccCCCccEEEEecCCcccc------cCCccccHHH
Confidence            9999999999999999999999999999999998766655443 22334555566555432110      0012345666


Q ss_pred             HHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccc----ccCCC------CCCcEEEEe
Q 006115          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLSF  272 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~  272 (660)
                      +........  ......++.++++|||||||.||+|+++|.++..........+..    ....+      ..+++++..
T Consensus       148 ~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPER--DFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCcC--CCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            655432211  111233455799999999999999999999987665443221100    00011      567899999


Q ss_pred             cChhhHHHHHHHHHHhhcCcEEEEec--C-ChHHHHHHhhhhcCeEEEechHHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 006115          273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       273 ~p~~~~~g~~~~~~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +|++|..++...+.+++.|+++++.+  . ++..+++.++++++|.++++|..+.. +...+. ..              
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~--------------  290 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR--------------  290 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc--------------
Confidence            99999999988888999999999998  4 89999999999999999999876643 322111 00              


Q ss_pred             HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecc
Q 006115          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~  427 (660)
                                                   ....++++|.+++||+++++++.+++.+.+ +.++++.||+||++......
T Consensus       291 -----------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  341 (533)
T PRK07798        291 -----------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT  341 (533)
T ss_pred             -----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence                                         001124899999999999999999999888 78999999999997655543


Q ss_pred             cCCCccccCccC--CCccCeeEEeeecCCCCCCCCCCCCC--ceEEEccCCcccccCCCchhhhhccc--C--CccccCc
Q 006115          428 FPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPC--GEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGD  499 (660)
Q Consensus       428 ~~~~~~~~~~~G--~~~~~~~v~iv~~~~~~~~~~~~g~~--GEi~v~g~~~~~gy~~~~~~~~~~f~--~--g~~~TGD  499 (660)
                      .....   ...|  .+.++..+++++ +++...+  .|+.  |+++ +++.++.||+++++.+...|.  +  +||+|||
T Consensus       342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~--~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD  414 (533)
T PRK07798        342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVE--PGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGD  414 (533)
T ss_pred             CCCCC---ccCCCCccCCCceEEEEC-CCCCCCC--CCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCc
Confidence            22211   2233  778899999998 6666443  4444  6665 566789999999999988883  2  5999999


Q ss_pred             eEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCC
Q 006115          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  576 (660)
Q Consensus       500 l~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  576 (660)
                      ++++|++|.+++.||.+|+|+. +|.+|+|.+||++|.++|.|.+|+|++.++.   +.+++++++.++..         
T Consensus       415 ~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------  484 (533)
T PRK07798        415 RARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR---------  484 (533)
T ss_pred             EEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCC---------
Confidence            9999999999999999999995 8999999999999999999999999997654   36788887765320         


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       .      +        .++|.++++ ..|+.|.+|..++++      +.+|+|++||++|+.|+++.++
T Consensus       485 -~------~--------~~~l~~~l~-~~l~~~~~P~~i~~~------~~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        485 -P------D--------LAELRAHCR-SSLAGYKVPRAIWFV------DEVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             -C------C--------HHHHHHHHh-hhcccCCCCeEEEEc------ccCCCCCcchhhHHHHhhhhcc
Confidence             0      1        123334443 679999999999887      4469999999999999998764

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.7e-57  Score=593.30  Aligned_cols=481  Identities=20%  Similarity=0.215  Sum_probs=396.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.++|.++++++||++|+.+.   +      .++||+||.++++++|++|.+.|+++|++|++++++++++++++|
T Consensus      1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691       1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3468999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      |++++|++++|++|.++.+++.++++.++++++|++......+...     ... ..+..+...                
T Consensus      1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691       1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH---------------- 1257 (4334)
T ss_pred             HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc----------------
Confidence            9999999999999999999999999999999999988765433111     000 111111110                


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      ..     ......+.....++++++++|||||||.||||+++|+++.+.+.+....+     ++.++++++...|+.|..
T Consensus      1258 ~~-----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 1327 (4334)
T PRK05691       1258 LD-----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDV 1327 (4334)
T ss_pred             cc-----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence            00     00011122234678999999999999999999999999999988877766     789999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      ++..++.++..|+++++.+.    ++..+++.++++++|++.++|+++..+......                       
T Consensus      1328 s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 1384 (4334)
T PRK05691       1328 SVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----------------------- 1384 (4334)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc-----------------------
Confidence            98888999999999999853    789999999999999999999999987542100                       


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccC-CCcc
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMC  433 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~  433 (660)
                                              ...++||.+++|||++++++.+.|.+.+ ++.++|.||+||++..++.... ....
T Consensus      1385 ------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 1440 (4334)
T PRK05691       1385 ------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDG 1440 (4334)
T ss_pred             ------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccC
Confidence                                    0014899999999999999999998877 7899999999999877654322 1222


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEECC
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP  505 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~--------g~~~TGDl~~~~~  505 (660)
                      ...++|+|++++.++|+| +++.  +++.|+.|||+|+|+++++||+++++.+.+.|..        +||+|||+|++++
T Consensus      1441 ~~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~ 1517 (4334)
T PRK05691       1441 ERSPIGRPLGNVLCRVLD-AELN--LLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA 1517 (4334)
T ss_pred             CCCcccceeCCCEEEEEC-CCCC--CCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC
Confidence            346899999999999998 5554  4566789999999999999999999999998832        4999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      ||.++++||.|++||+ +|++|+|.+||.+|.+||+|.+|+|+...+.  ..++++++...+..                
T Consensus      1518 dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~---------------- 1580 (4334)
T PRK05691       1518 DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE---------------- 1580 (4334)
T ss_pred             CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC----------------
Confidence            9999999999999998 7999999999999999999999999975533  47889888765320                


Q ss_pred             hccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                       ..       .++|+++++ ..||.|++|..++++      +.+|+|++||++|++|.+.
T Consensus      1581 -~~-------~~~l~~~l~-~~Lp~y~vP~~~~~~------~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1581 -AE-------AERLKAALA-AELPEYMVPAQLIRL------DQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             -CC-------HHHHHHHHH-HhCccccCCcEEEEc------cccCCCCCCCcChhhcCcc
Confidence             00       123444443 789999999999987      4569999999999999653

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.2e-57  Score=495.13  Aligned_cols=458  Identities=18%  Similarity=0.137  Sum_probs=333.0

Q ss_pred             eCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh------hhhhccccccccCccEEEEecC
Q 006115          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  181 (660)
Q Consensus       108 ~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~i~~~~~  181 (660)
                      ++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++...      ..+.. .... .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSK-VVEA-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhh-hhhc-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      11111 1000 11122222111


Q ss_pred             CcHHHHHHHhhCCceeeeHHHHHhcCcc------CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccc
Q 006115          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (660)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~  255 (660)
                      .....    ........+|.++......      .........++++++|+|||||||.||+|++||++++..+......
T Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPVA----VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             CcccC----CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            10000    0000012345555422110      0111112356899999999999999999999999988766544433


Q ss_pred             cccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH
Q 006115          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (660)
Q Consensus       256 ~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~  333 (660)
                      +     ++..+|++++.+|++|.+++..++.++..|+++++.+.  ++..+++.|+++++|++.++|+++..|++.....
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~  229 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA  229 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence            4     67889999999999999887767778999999998863  7889999999999999999999999886421000


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCce
Q 006115          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  411 (660)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~--~~~v  411 (660)
                                                         ....++        ++||.+++||+++++++.+++++.+  ++++
T Consensus       230 -----------------------------------~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        230 -----------------------------------MEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             -----------------------------------cccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                               000111        3899999999999999998887733  4789


Q ss_pred             eeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCc--ccccCCCchhhhhc
Q 006115          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  489 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~--~~gy~~~~~~~~~~  489 (660)
                      ++.||+||++..+...........+++|.|.++++++|+| +++..++.+.++.|||+++||.+  +.||++++ .+ ..
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence            9999999987544332222222347899999999999999 66665554434689999999976  57999765 33 33


Q ss_pred             ccCC----------ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhc-CcCcceEEEEecCCC----C
Q 006115          490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDIWVYGDSLK----S  554 (660)
Q Consensus       490 f~~g----------~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~p~V~~~~v~~~~~~----~  554 (660)
                      +.+|          ||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+ ||.|.+|+|++.+++    .
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~  422 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE  422 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence            4344          6899999999999999999999999996 8999999999999986 999999999998764    3


Q ss_pred             eEEEEE---EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCcccc
Q 006115          555 MLVAVV---VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA  631 (660)
Q Consensus       555 ~~~a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~  631 (660)
                      .++|+|   +++++..       .        .+.+++++    .+++.++ .+|+.+..|..+.++      +.+|+|+
T Consensus       423 ~~~a~v~~~v~~~~~~-------~--------~~~~~l~~----~~~~~l~-~~l~~~~~~~~i~~v------~~lP~t~  476 (499)
T PLN03051        423 LLVIFLVLGEEKKGFD-------Q--------ARPEALQK----KFQEAIQ-TNLNPLFKVSRVKIV------PELPRNA  476 (499)
T ss_pred             EEEEEEEcceeccccc-------c--------cchHHHHH----HHHHHHH-hhcCCccCCceEEEc------CCCCCCC
Confidence            578888   6654310       0        01233333    3334433 568886667678776      4569999


Q ss_pred             ccccchHHHHHHHHHHHH
Q 006115          632 TLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       632 ~GKv~R~~l~~~~~~~l~  649 (660)
                      +||++|++|++.+.+.+.
T Consensus       477 ~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        477 SNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             CccHHHHHHHHHHHHhhc
Confidence            999999999988877664

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-56  Score=489.88  Aligned_cols=482  Identities=21%  Similarity=0.236  Sum_probs=379.7

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEE
Q 006115           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  154 (660)
                      +.+||.||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+.+.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcccccccc-CccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCC
Q 006115          155 QDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG  233 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG  233 (660)
                      ++.....+.... .... ..+.++......           .....|.+......    .......++.++++|||||||
T Consensus        90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG  153 (502)
T PRK08276         90 SAALADTAAELA-AELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG  153 (502)
T ss_pred             ccchhhHHHHHh-hhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence            987665543221 1112 334444432111           11223444433221    111235567899999999999


Q ss_pred             CCceeeeccHhHHHHhh--hcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhh
Q 006115          234 DPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLME  310 (660)
Q Consensus       234 ~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~  310 (660)
                      .||+|.++|.++.....  ....... .......+++++++.|++|.+++...+.++..|+++++.+. ++..+++.+++
T Consensus       154 ~PK~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  232 (502)
T PRK08276        154 RPKGIKRPLPGLDPDEAPGMMLALLG-FGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIER  232 (502)
T ss_pred             CCceEEEccCCcchhhhhHHhhhhhh-hcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHH
Confidence            99999999877554322  1101110 01123577899999999999998887788999999988876 89999999999


Q ss_pred             hcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEE
Q 006115          311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS  390 (660)
Q Consensus       311 ~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~  390 (660)
                      +++|++.++|+++..+++.....                                   ...+++        +++|.+++
T Consensus       233 ~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~  269 (502)
T PRK08276        233 YRVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIH  269 (502)
T ss_pred             hCCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEe
Confidence            99999999999998886431100                                   001112        38999999


Q ss_pred             ccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEE
Q 006115          391 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  470 (660)
Q Consensus       391 ~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v  470 (660)
                      +|++++.++.+++.+.++.++++.||+||++.+++..........+++|.|+ +..+++++ +++.  +++.|+.|||++
T Consensus       270 ~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v  345 (502)
T PRK08276        270 AAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYF  345 (502)
T ss_pred             cCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEE
Confidence            9999999999999998899999999999999866655443334447899999 78999998 5543  455678999999


Q ss_pred             ccCCcccccCCCchhhhhccc-CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEe
Q 006115          471 RGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG  549 (660)
Q Consensus       471 ~g~~~~~gy~~~~~~~~~~f~-~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~  549 (660)
                      +|+.++.||+++++.+...+. +|||+|||+++++++|.+++.||.+|+|++ +|.+|++.+||.+|.+||+|.+|+|++
T Consensus       346 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~  424 (502)
T PRK08276        346 EMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFG  424 (502)
T ss_pred             ECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence            999999999999999999984 599999999999999999999999999996 899999999999999999999999999


Q ss_pred             cCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCC
Q 006115          550 DSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER  626 (660)
Q Consensus       550 ~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~  626 (660)
                      ..++   +.+++++++.++..                 ...+..    +.+.+.+ +..|+.++.|..++++++      
T Consensus       425 ~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~----~~i~~~~-~~~l~~~~~p~~i~~~~~------  476 (502)
T PRK08276        425 VPDEEMGERVKAVVQPADGAD-----------------AGDALA----AELIAWL-RGRLAHYKCPRSIDFEDE------  476 (502)
T ss_pred             CCCcccCceEEEEEEECCCCC-----------------CChhhH----HHHHHHH-HhhccCCCCCcEEEEecC------
Confidence            7765   37899999876430                 112222    2344444 368999999999998744      


Q ss_pred             CccccccccchHHHHHHHHHHHH
Q 006115          627 DLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       627 ~P~t~~GKv~R~~l~~~~~~~l~  649 (660)
                      +|+|++||++|++|++.|...-+
T Consensus       477 lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        477 LPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CCCCcccchhHHHHHHHHHhhhh
Confidence            59999999999999999865443

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-56  Score=498.76  Aligned_cols=515  Identities=17%  Similarity=0.195  Sum_probs=371.3

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           43 TAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ++.++|++++..+||++|+++.   +.   ..+..+++||.||.+++.++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6889999999999999999875   31   1122468999999999999999999999 689999999999999999999


Q ss_pred             HHHhCCCeEeecCC---CCChhhHHHHhhcccceEEEEccchhhhhhcccccc-ccCccEEEEecCCcHHHHHHHhhCCc
Q 006115          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       120 A~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      ||+++|++++|+++   ..+.+++.++|+.++++++++++.....+....... ......++..+..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987665443211100 0011112211110             


Q ss_pred             eeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccc-cccccCCCCCCcEEEEecC
Q 006115          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~~~~~~~d~~l~~~p  274 (660)
                            ++..   ..........++++++++|||||||.||+|.++|+++++.+...... +.........++++++++|
T Consensus       145 ------~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  215 (578)
T PRK05850        145 ------DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP  215 (578)
T ss_pred             ------cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence                  0000   00011123467899999999999999999999999998877654332 1111111456889999999


Q ss_pred             hhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHH-HHHHHHHHHhhchHHHHHHHH
Q 006115          275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKI-HEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       275 ~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l-~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      ++|.+|+.. .+.+++.|+++++.+.     ++..++..+.+++++++ .+|..+..+ .......              
T Consensus       216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--------------  280 (578)
T PRK05850        216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--------------  280 (578)
T ss_pred             CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence            999999875 6778999999998863     68999999999999865 556544333 2211000              


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCCCCC
Q 006115          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETC  421 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~  421 (660)
                                          .....++        +++|.+++||+++++.+.++|.+.++      ..+++.||+||++
T Consensus       281 --------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  332 (578)
T PRK05850        281 --------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT  332 (578)
T ss_pred             --------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence                                0000111        38999999999999999999888762      3689999999987


Q ss_pred             CceecccCCCc------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 006115          422 GPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (660)
Q Consensus       422 ~~~~~~~~~~~------------------------~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~  477 (660)
                      ..+........                        ....++|.|. +.++++++ ++++ .+++.|+.|||+|+|+.++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~  409 (578)
T PRK05850        333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA  409 (578)
T ss_pred             hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence            65443221100                        0011334443 57899998 5433 44667899999999999999


Q ss_pred             ccCCCchhhhhccc------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceE
Q 006115          478 GYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (660)
Q Consensus       478 gy~~~~~~~~~~f~------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~  545 (660)
                      ||+++++.+.+.|.            +|||+|||+|+++ +|++++.||.+|+|++ +|++|+|.+||++|.+||.+ +|
T Consensus       410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~  486 (578)
T PRK05850        410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RV  486 (578)
T ss_pred             cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cE
Confidence            99999999998883            4799999999998 9999999999999997 89999999999999999995 47


Q ss_pred             EEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCC
Q 006115          546 WVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD  623 (660)
Q Consensus       546 ~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~  623 (660)
                      +|++.++.  +.++++|+++....        ...      ........+.+.+...+.. .  ....|..+.+++    
T Consensus       487 ~v~~v~~~~~~~~~a~v~~~~~~~--------~~~------~~~~~~~~l~~~v~~~l~~-~--~~~~~~~~~~~~----  545 (578)
T PRK05850        487 AAISVPDDGTEKLVAIIELKKRGD--------SDE------EAMDRLRTVKREVTSAISK-S--HGLSVADLVLVA----  545 (578)
T ss_pred             EEEEecCCCceEEEEEEEeccccC--------cch------hhhhhHHHHHHHHHHHHHH-H--hCCCceEEEEeC----
Confidence            77776654  47888988775421        000      0001234445555443321 1  122455666663    


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 006115          624 MERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  656 (660)
Q Consensus       624 ~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~~~  656 (660)
                      .+.+|+|++||++|+++++.|.+.   .|.++.
T Consensus       546 ~~~iP~t~~GKi~R~~l~~~~~~~---~~~~~~  575 (578)
T PRK05850        546 PGSIPITTSGKIRRAACVEQYRQD---EFTRLD  575 (578)
T ss_pred             CCCcCCCCCchHHHHHHHHHHHcC---Cccccc
Confidence            256799999999999999998653   355443

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.1e-56  Score=487.17  Aligned_cols=481  Identities=21%  Similarity=0.228  Sum_probs=374.6

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEE
Q 006115           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  154 (660)
                      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhccccccccCccEEEEecCCcHHHHHH--H---hhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecC
Q 006115          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--A---VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  229 (660)
                      +......+.+...    ....++............  .   ........+|+++.....    .......+++++++|||
T Consensus        90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALP----AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhh----cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            8876654432221    111111111100000000  0   000112334555443221    11233578999999999


Q ss_pred             CCCCCCceeeeccHhHHHH---hhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHH
Q 006115          230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (660)
Q Consensus       230 GTTG~pK~v~~th~~l~~~---~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~  305 (660)
                      ||||.||+|.++|......   .......+     ++..++++++..|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            9999999999877654333   22223333     67889999999999998887777777888999888776 899999


Q ss_pred             HHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcE
Q 006115          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (660)
Q Consensus       306 ~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  385 (660)
                      +.++++++|++.++|+++..++.......                                   ...+        .+++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------~~~~--------~~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEVR-----------------------------------AKYD--------VSSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhhc-----------------------------------ccCC--------CCce
Confidence            99999999999999999988764211100                                   0001        1489


Q ss_pred             eEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCC
Q 006115          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (660)
Q Consensus       386 r~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~  465 (660)
                      |.+++||+++++++.+.+.+.+++.+++.||+||++.+++.........++++|.|++++++++++ +++.  +++.|+.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGR--PLPQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCC--CCCCCCc
Confidence            999999999999999999998999999999999999876655443334457899999999999999 6553  4556789


Q ss_pred             ceEEEccCCccc-ccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcce
Q 006115          466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  544 (660)
Q Consensus       466 GEi~v~g~~~~~-gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~  544 (660)
                      |||+++|+.++. +|+++++.+...+.+|||+|||+++++++|.+++.||.+|+|++ +|.+|+|.+||+.|.++|+|.+
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~  429 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD  429 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence            999999998875 89999998888888999999999999999999999999999996 8999999999999999999999


Q ss_pred             EEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCC
Q 006115          545 IWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRP  621 (660)
Q Consensus       545 ~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~  621 (660)
                      |++++.++.   ..+++++++.+...        .        .    .    ++|.+.+ +..|+.|++|..+.++   
T Consensus       430 ~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~----~----~~l~~~l-~~~l~~~~~P~~i~~~---  481 (509)
T PRK12406        430 CAVFGIPDAEFGEALMAVVEPQPGAT--------L--------D----E----ADIRAQL-KARLAGYKVPKHIEIM---  481 (509)
T ss_pred             EEEEeeeccccCceeEEEEEECCCCC--------C--------C----H----HHHHHHH-HHhcccCCCCcEEEEe---
Confidence            999987654   36788888765320        0        1    1    2233333 3678899999999887   


Q ss_pred             CCCCCCccccccccchHHHHHHHHH
Q 006115          622 FDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       622 ~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         +.+|+|++||++|++|++.+.+
T Consensus       482 ---~~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        482 ---AELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             ---ccCCCCCccchhHHHHHHHHHh
Confidence               4469999999999999887654

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-56  Score=517.82  Aligned_cols=491  Identities=15%  Similarity=0.118  Sum_probs=361.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++.++|.++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45578999999999999999999874    3     47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++|++|.   .++.++++.++++++|+++.....+...       ...+++++.......  .........
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~--~~~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDL--DLPDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccc--cCCcchhhh
Confidence            9999999999999985   6789999999999999987766544221       123444432110000  000000001


Q ss_pred             eHHHHHhcCccCC--ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       199 ~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      .+.++.......+  ....+..++++++|+|| ||||.||++.++|.++..........+     ++..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            1111100000000  00112236899999999 578888888888876655444333333     678899999999999


Q ss_pred             hHHHHHHHHHH-hhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          277 HILDRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~~~~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |.+++...+.+ +..|+++++.+. ++..+++.|+++++|+++++|+++..|++....                      
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~----------------------  714 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF----------------------  714 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence            99999875544 555666666554 899999999999999999999999888642100                      


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCcc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                     ...        ..++||.++  |+.+++++.+.+.+.++ +++++.||+||++...... .  ..
T Consensus       715 ---------------~~~--------~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~  766 (994)
T PRK07868        715 ---------------VLH--------GNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA  766 (994)
T ss_pred             ---------------ccC--------CCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence                           000        013789776  33499999999999885 8899999999987654322 1  12


Q ss_pred             ccCccCCCccCe-eEEeeec----------CCCCCCCCCCCCCceEEEccCCcccccCCCchhh--hhcc--cCCccccC
Q 006115          434 MVGTAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT--RESI--IDGWFHTG  498 (660)
Q Consensus       434 ~~~~~G~~~~~~-~v~iv~~----------~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~--~~~f--~~g~~~TG  498 (660)
                      ..+++|+|++++ +++|+..          +++....++.|+.|||+++++..    + +++.+  +..|  .+|||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            347899999998 6776521          12211235567899999999753    3 33332  2234  37999999


Q ss_pred             ceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC--eEEEEEEcChhhHHHHHHHCCC
Q 006115          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGH  576 (660)
Q Consensus       499 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~  576 (660)
                      |+|++|+||+|+++||.||+||+ +|.+|+|.|||++|.+||.|.+|+|++.+++.  .++|+|+++++..        .
T Consensus       842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~--------~  912 (994)
T PRK07868        842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAA--------I  912 (994)
T ss_pred             ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCc--------C
Confidence            99999999999999999999996 78899999999999999999999999987653  7889998876420        0


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                              +        .++|+++++ + +|.|++|+.|++++      .+|+|++||++|++|++.-
T Consensus       913 --------~--------~~~L~~~l~-~-l~~y~vP~~i~~v~------~lP~T~sGKi~r~~L~~~~  956 (994)
T PRK07868        913 --------T--------AADLTEALA-S-LPVGLGPDIVHVVP------EIPLSATYRPTVSALRAAG  956 (994)
T ss_pred             --------C--------HHHHHHHHH-h-CCCCcCCeEEEEeC------CCCCCccccEehHHHHhcC
Confidence                    1        124555554 3 89999999999984      4599999999999998663

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.3e-56  Score=476.92  Aligned_cols=433  Identities=25%  Similarity=0.314  Sum_probs=354.5

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (660)
Q Consensus        78 Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~  157 (660)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+.+..+++.++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCce
Q 006115          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (660)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~  237 (660)
                      .....             + .                  ...+..+................+++++++|||||||.||+
T Consensus        81 ~~~~~-------------~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD-------------F-Q------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc-------------e-e------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110             0 0                  00111111111111111233467889999999999999999


Q ss_pred             eeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecCChHHHHHHhhhhcCeEEE
Q 006115          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (660)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~  317 (660)
                      |.++|+++...+......+     ++.++|+++..+|++|..++...+.++..|+++++.+. ...+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence            9999999999888877766     78899999999999999998878888999999998864 34999999999999999


Q ss_pred             echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCH
Q 006115          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (660)
Q Consensus       318 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~  397 (660)
                      ++|+++..+++....                                                 .+++|.++++|+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999887642100                                                 0289999999999999


Q ss_pred             HHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 006115          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (660)
Q Consensus       398 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~  477 (660)
                      ++.+.++. +++++++.||+||++..++...........++|.|++++++++.. ++.       ++.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence            99998876 599999999999998866554433322223589999999999854 222       157999999999999


Q ss_pred             ccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---C
Q 006115          478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---S  554 (660)
Q Consensus       478 gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~  554 (660)
                      ||+++++.+...+.+|||+|||+++++.+|.+++.||.+|+|++ +|.+|++.+||++|.++|.|.+++|++.++.   .
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  383 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ  383 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence            99998888877778899999999999999999999999999996 8999999999999999999999999987654   3


Q ss_pred             eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccc
Q 006115          555 MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLK  634 (660)
Q Consensus       555 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GK  634 (660)
                      .+++++++..+.                  +..        .+.+++ +..|+.|++|..+.++      +.+|+|++||
T Consensus       384 ~~~~~v~~~~~~------------------~~~--------~l~~~l-~~~l~~~~~p~~i~~~------~~iP~t~~GK  430 (436)
T TIGR01923       384 VPVAYIVSESDI------------------SQA--------KLIAYL-TEKLAKYKVPIAFEKL------DELPYNASGK  430 (436)
T ss_pred             eeEEEEEECCCC------------------CHH--------HHHHHH-HHhhhCCCCCeEEEEe------cCCCCCCCCc
Confidence            677887776532                  112        222333 3578899999999987      4569999999


Q ss_pred             cchHHH
Q 006115          635 KKRNKL  640 (660)
Q Consensus       635 v~R~~l  640 (660)
                      ++|++|
T Consensus       431 ~~r~~L  436 (436)
T TIGR01923       431 ILRNQL  436 (436)
T ss_pred             eecccC
Confidence            999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.5e-55  Score=483.48  Aligned_cols=493  Identities=17%  Similarity=0.175  Sum_probs=370.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .++.+.|..+|+.+|+.+++...   ++    .+.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~   74 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL   74 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            46889999999999999988654   33    268999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhH-------HHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCC
Q 006115          122 NALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      +++|++++++++..+.+++       ..+++.++++.+++++........ ...                        ..
T Consensus        75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~~  129 (545)
T PRK07768         75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE------------------------KG  129 (545)
T ss_pred             HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc------------------------cC
Confidence            9999999999988776554       446777899999998765432211 000                        01


Q ss_pred             ceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCC-cEEEEec
Q 006115          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSFL  273 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~~  273 (660)
                      .....++++.....   .......++++++++|||||||.||+|+++|+++...+......+     ++..+ |++++++
T Consensus       130 ~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~  201 (545)
T PRK07768        130 IRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWL  201 (545)
T ss_pred             CceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeC
Confidence            11234444443221   122344679999999999999999999999999999887766655     56665 8999999


Q ss_pred             ChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006115          274 PLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       274 p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      |++|..++.. +..++..|++++++..     ++..+...+++++++++.++|..+..+...+.....            
T Consensus       202 p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~------------  269 (545)
T PRK07768        202 PLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK------------  269 (545)
T ss_pred             CCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc------------
Confidence            9999999875 4567899999988753     678889999999999998888887766543211100            


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh---cCC---ceeeecCCCCCC
Q 006115          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETC  421 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~tE~~  421 (660)
                                        .   ...++        +++|.++++|+++++.+.+.+.+.   +|.   .+++.||+||++
T Consensus       270 ------------------~---~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~  320 (545)
T PRK07768        270 ------------------P---GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEAT  320 (545)
T ss_pred             ------------------c---cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence                              0   00111        389999999999999999998774   555   499999999998


Q ss_pred             CceecccCCC-------------------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcc
Q 006115          422 GPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF  476 (660)
Q Consensus       422 ~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~  476 (660)
                      ..++....+.                         ....+++|.|++++++++++ +++.  +++.++.|||+++|+.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~--~~~~g~~Gel~v~~~~~~  397 (545)
T PRK07768        321 LAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ--VLPPRGVGVIELRGESVT  397 (545)
T ss_pred             eEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC--CCCCCCEEEEEEccCccc
Confidence            7654432211                         11235799999999999998 6654  445678999999999999


Q ss_pred             cccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC--CC-
Q 006115          477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK-  553 (660)
Q Consensus       477 ~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~-  553 (660)
                      .||++++......+.+|||+|||+++++++|.++++||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++..  +. 
T Consensus       398 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~  476 (545)
T PRK07768        398 PGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGH  476 (545)
T ss_pred             ccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCC
Confidence            999987655555457899999999999999999999999999997 79999999999999999999998776532  22 


Q ss_pred             --CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCcccc
Q 006115          554 --SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA  631 (660)
Q Consensus       554 --~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~  631 (660)
                        ..+++++......                   .......+.+.+++.+. ..+  ..+|..+.+++.    +.+|+|+
T Consensus       477 ~~~~~~~~v~~~~~~-------------------~~~~~~~l~~~~~~~l~-~~~--~~~p~~v~~v~~----~~lP~t~  530 (545)
T PRK07768        477 SREGFAVAVESNAFE-------------------DPAEVRRIRHQVAHEVV-AEV--GVRPRNVVVLGP----GSIPKTP  530 (545)
T ss_pred             CceEEEEEEEecccc-------------------cHHHHHHHHHHHHHHHH-HHh--CCCccEEEEeCC----CcCCCCC
Confidence              2344444333221                   11111223333333222 111  145777877742    3579999


Q ss_pred             ccccchHHHHHHHH
Q 006115          632 TLKKKRNKLLIYYQ  645 (660)
Q Consensus       632 ~GKv~R~~l~~~~~  645 (660)
                      +||++|+.++++|.
T Consensus       531 ~GKi~r~~l~~~~~  544 (545)
T PRK07768        531 SGKLRRANAAELVT  544 (545)
T ss_pred             chhHHHHHHHHhcC
Confidence            99999999999874

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-53  Score=450.60  Aligned_cols=396  Identities=15%  Similarity=0.110  Sum_probs=330.5

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEE
Q 006115           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~  154 (660)
                      +++||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++.++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            58999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCC
Q 006115          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  234 (660)
                      ++.....                  .                  .              .....++++++++|||||||.
T Consensus        86 ~~~~~~~------------------~------------------~--------------~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFTK------------------L------------------E--------------AVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCccccc------------------c------------------c--------------CCCCCCCCceEEEECCCCCCC
Confidence            7631100                  0                  0              012346789999999999999


Q ss_pred             CceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhc
Q 006115          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (660)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~  312 (660)
                      ||+|.+||+++.+.+..+...+     ....+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999998888776655     6778899999999999999865 6778999999988876 8999999999999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEcc
Q 006115          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (660)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G  392 (660)
                      +|+++++|+++..+.+....                                                 ..+++.++++|
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999887642110                                                 02678899999


Q ss_pred             CCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc
Q 006115          393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (660)
Q Consensus       393 ~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g  472 (660)
                      +++++++.+.+++. +.++++.||+||++.+.....   ....+++|+|++++++++.+ +        .++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence            99999999999876 678999999999986543221   22347899999999999875 2        23579999986


Q ss_pred             CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC
Q 006115          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  552 (660)
Q Consensus       473 ~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~  552 (660)
                      .                  ++||+|||+|+++++|++++.||.+|+|++ +|++|+|.+||+++.++|+|.+|+|++.++
T Consensus       289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            2                  579999999999999999999999999997 899999999999999999999999998775


Q ss_pred             C---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCcc
Q 006115          553 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV  629 (660)
Q Consensus       553 ~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~  629 (660)
                      +   ..++++++.....                  +.        +.++++++ ..|+.|++|..+.++      +.+|+
T Consensus       350 ~~~~~~~~~~v~~~~~~------------------~~--------~~l~~~l~-~~l~~~~~P~~i~~v------~~iP~  396 (414)
T PRK08308        350 PVAGERVKAKVISHEEI------------------DP--------VQLREWCI-QHLAPYQVPHEIESV------TEIPK  396 (414)
T ss_pred             CCCCceEEEEEEeCCCC------------------CH--------HHHHHHHH-HhCccccCCcEEEEe------ccCCC
Confidence            5   3677777765321                  11        12333333 678999999999987      45699


Q ss_pred             ccccccchHHH
Q 006115          630 TATLKKKRNKL  640 (660)
Q Consensus       630 t~~GKv~R~~l  640 (660)
                      |++||++|+.|
T Consensus       397 t~~GKi~r~~~  407 (414)
T PRK08308        397 NANGKVSRKLL  407 (414)
T ss_pred             CCCcCeehhhh
Confidence            99999999954

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.5e-53  Score=456.97  Aligned_cols=404  Identities=31%  Similarity=0.480  Sum_probs=314.2

Q ss_pred             HHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCe
Q 006115           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (660)
Q Consensus        48 l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  127 (660)
                      |+++|+++||++|+++.   ++     +++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            67899999999999871   22     79999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCChhhHHHHhhcccceEEEE----ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHH
Q 006115          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (660)
Q Consensus       128 ~v~i~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (660)
                      ++|++|.++.+++.++|+.++++++|+    +......+.... ........++.++.....             ....+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIF-KQEDPSSSIIILDRDDLP-------------KKEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHH-TTSTTTEEEEEESHSSCT-------------TCHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhh-cccccccccccccccccc-------------ccccc
Confidence            999999999999999999999999997    222211121111 111233445555532210             00001


Q ss_pred             HhcCccCCccCCC-CCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHH-
Q 006115          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (660)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-  281 (660)
                      .......... .. ..++++++++|||||||.||+|.++|+++++.+..+.  +... .+++  |++++++|++|.+|+ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            1000000000 00 0578999999999999999999999999999988764  1110 1233  699999999999999 


Q ss_pred             HHHHHHhhcCcEEEEecC-C---hHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      ..++.+++.|+++++++. .   +..+++.++++++|+++++|+++..+++..... ...                    
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~--------------------  271 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI--------------------  271 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence            568889999999999986 2   477899999999999999999999987621111 000                    


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceeccc-CCCcccc
Q 006115          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV  435 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~-~~~~~~~  435 (660)
                                  ...++        ++||.++++|+++++++.+.+++.++. ++++.||+||++.+++... .......
T Consensus       272 ------------~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  272 ------------SKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             ------------TTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             ------------ccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                        00011        379999999999999999999999987 9999999999999987664 2333445


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCCcEEEEec
Q 006115          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       436 ~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~-g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      +++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.+.+.|.+ |||+|||+|++|++|+++++||
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~-~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR  409 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTG-EPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR  409 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTS-SBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccc-cccc-ccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence            7899999999999999 5533 34467789999999999999999999999999965 8999999999999999999999


Q ss_pred             cCCeeEcC
Q 006115          515 KKNLIKIS  522 (660)
Q Consensus       515 ~~d~i~~~  522 (660)
                      .||+||+|
T Consensus       410 ~~~~i~~~  417 (417)
T PF00501_consen  410 SDDMIKVR  417 (417)
T ss_dssp             GSCEEEET
T ss_pred             eCCEEEeC
Confidence            99999963

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-50  Score=406.55  Aligned_cols=501  Identities=19%  Similarity=0.159  Sum_probs=379.9

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....|+.++|..+++++|+++|+++.   +.    .+++||+|+.+.++++|++|+..|++.||.|+++|+|.+|+++++
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW  146 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW  146 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence            34578999999999999999999987   43    268999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |+++++|++...||++...+.|.|.|..++++++|++.+....+.+.........-.++..+....         .....
T Consensus       147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~  217 (649)
T KOG1179|consen  147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIE  217 (649)
T ss_pred             HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHH
Confidence            999999999999999999999999999999999999999887776652221111122222221111         01111


Q ss_pred             eHHHHHhcCccCC---ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh
Q 006115          199 SWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       199 ~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (660)
                      ++...++.....+   .........++++++|||||||.||..++||......+..+...+     +++++|+++.++|+
T Consensus       218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL  292 (649)
T KOG1179|consen  218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL  292 (649)
T ss_pred             HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence            2222222222222   123345778899999999999999999999999888887666666     89999999999999


Q ss_pred             hhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          276 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      +|..|.+. +..++..|+|+++-.. ++..|++-..+|++|+..-...+.+-|++......++.                
T Consensus       293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~----------------  356 (649)
T KOG1179|consen  293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQ----------------  356 (649)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcC----------------
Confidence            99998876 5677999999999886 99999999999999999988888877765322111111                


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCceecccCCCc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEM  432 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~~~~~~~~~~  432 (660)
                                                   ..+|..+  |..+.++.++.|.+.||.+ |...||+||+........... 
T Consensus       357 -----------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~v-  404 (649)
T KOG1179|consen  357 -----------------------------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRV-  404 (649)
T ss_pred             -----------------------------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCcc-
Confidence                                         3677766  5669999999999999865 999999999887665442211 


Q ss_pred             cccCccCC------CccCeeEEeeecCCCCC--------CCCCCCCCceEEEc----cC-CcccccCCCchhhhhc----
Q 006115          433 CMVGTAGP------VSVYSELRLEEVPEMGY--------SPLDDPPCGEVCVR----GK-TLFSGYYKNPDLTRES----  489 (660)
Q Consensus       433 ~~~~~~G~------~~~~~~v~iv~~~~~~~--------~~~~~g~~GEi~v~----g~-~~~~gy~~~~~~~~~~----  489 (660)
                         +.+|+      -+--.++.-+|...+..        .+++.||.|.+.-+    .| .-|.||.++.+.+.+.    
T Consensus       405 ---GA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  405 ---GACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             ---ccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence               22222      12223333333122211        35667888866432    22 2289999977666544    


Q ss_pred             -cc--CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEc
Q 006115          490 -II--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVP  562 (660)
Q Consensus       490 -f~--~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~  562 (660)
                       |.  |-||.|||+-.+|+.|++||..|..|+... .|++|+..|||++|..+..+.||.|+|+.-+    ..-.|.|+.
T Consensus       482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~  560 (649)
T KOG1179|consen  482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL  560 (649)
T ss_pred             hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence             42  459999999999999999999999999998 7999999999999999999999999996544    256666665


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++..                    .....+.+++     +..||+|.+|..+.+.++      +++|.+-|.++..|.+
T Consensus       561 ~p~~~--------------------~d~~~l~~~l-----~~~LP~YA~P~FlRl~~~------i~~TgTFKl~K~~L~~  609 (649)
T KOG1179|consen  561 DPTTE--------------------KDLEKLYQHL-----RENLPSYARPRFLRLQDE------IEKTGTFKLQKTELQK  609 (649)
T ss_pred             cCccc--------------------chHHHHHHHH-----HhhCccccchHHHHHHhh------hhcccchhhHHHHHHH
Confidence            55431                    1122333333     478999999998888754      5899999999999887


Q ss_pred             H
Q 006115          643 Y  643 (660)
Q Consensus       643 ~  643 (660)
                      .
T Consensus       610 e  610 (649)
T KOG1179|consen  610 E  610 (649)
T ss_pred             c
Confidence            5

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=7.9e-50  Score=426.93  Aligned_cols=389  Identities=25%  Similarity=0.323  Sum_probs=324.8

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (660)
Q Consensus        78 Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~  156 (660)
                      ||.||.+.++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCc
Q 006115          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (660)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK  236 (660)
                      .....+.....       .+.......                 ...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76654432211       111111100                 000000000011111145789999999999999999


Q ss_pred             eeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhc
Q 006115          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (660)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~  312 (660)
                      +|.+||++++..+..+...+     .+.++|++++..|++|.+++...+.++..|+++++++.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999998887766     78899999999999999998888999999999998876    2689999999999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEcc
Q 006115          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (660)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G  392 (660)
                      +|.++++|.+++.+.+...                                                ...++||.++++|
T Consensus       212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence            9999999999999876422                                                0114899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCc--c--ccCccCCCccCeeEEeeecCCCCCCCCCCCCCce
Q 006115          393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM--C--MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (660)
Q Consensus       393 ~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~--~--~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GE  467 (660)
                      +++++++.+.+.+.++ +.+++.||+||++.++........  .  ...++|.|+++++++|++ +++  ..++.|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceE
Confidence            9999999999999997 899999999999987753332221  1  157899999999999999 553  4455678999


Q ss_pred             EEEccCCcccccCCCchhhhhcccC-------C--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhc
Q 006115          468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (660)
Q Consensus       468 i~v~g~~~~~gy~~~~~~~~~~f~~-------g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  538 (660)
                      |+++|+.++.||+++++.+.+.|..       |  ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||++|..
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~  399 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR  399 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence            9999999999999999999888732       2  9999999999999999999999999996 8999999999999999


Q ss_pred             CcCcceEEE
Q 006115          539 APIIEDIWV  547 (660)
Q Consensus       539 ~p~V~~~~v  547 (660)
                      ||.|.+|+|
T Consensus       400 ~~~v~~~~v  408 (408)
T TIGR01733       400 HPGVREAVV  408 (408)
T ss_pred             CcchhhhcC
Confidence            999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-42  Score=364.68  Aligned_cols=316  Identities=24%  Similarity=0.291  Sum_probs=255.6

Q ss_pred             CCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEE
Q 006115          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY  296 (660)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~  296 (660)
                      ..++++++++|||||||.||+|+++|.++...+......+       ...++++..+|++|..|+...+.++..|+++++
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~  104 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE  104 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence            4578999999999999999999999999988877654332       345688999999999998888888999999887


Q ss_pred             ec----CChHHHHHHhhhhc--CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 006115          297 YH----GDLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  370 (660)
Q Consensus       297 ~~----~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (660)
                      +.    .++..+++.+++++  .++...+|..+..++.....                                      
T Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~--------------------------------------  146 (358)
T PRK07824        105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA--------------------------------------  146 (358)
T ss_pred             cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--------------------------------------
Confidence            33    28999999999998  56666778776654321000                                      


Q ss_pred             HHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEee
Q 006115          371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  450 (660)
Q Consensus       371 ~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv  450 (660)
                      .        ...+++|.+++||+++++++.+.+.+ +++++++.||+||++..+.           ..|.|++++++++.
T Consensus       147 ~--------~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i~  206 (358)
T PRK07824        147 T--------AALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRVE  206 (358)
T ss_pred             c--------CCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC-----------cCceeCCCCEEEec
Confidence            0        00138999999999999999998876 5999999999999876432           35889999999984


Q ss_pred             ecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecc
Q 006115          451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL  529 (660)
Q Consensus       451 ~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~  529 (660)
                      +              |||+++|+.++.||+++++..  .| .+|||+|||+|++ .+|.+++.||.+|+|++ +|++|+|
T Consensus       207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p  268 (358)
T PRK07824        207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLP  268 (358)
T ss_pred             C--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECH
Confidence            4              999999999999999987643  34 6789999999999 89999999999999997 8999999


Q ss_pred             hhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCC
Q 006115          530 EYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  606 (660)
Q Consensus       530 ~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  606 (660)
                      .+||..|.+||+|.+|+|++.++.   ..++++++...+.                    ..    ..++|+++++ +.|
T Consensus       269 ~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~--------------------~~----~~~~i~~~~~-~~l  323 (358)
T PRK07824        269 QVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP--------------------AP----TLEALRAHVA-RTL  323 (358)
T ss_pred             HHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC--------------------Cc----CHHHHHHHHH-hhC
Confidence            999999999999999999997654   3688888765432                    00    1123444443 689


Q ss_pred             CCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          607 RGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       607 ~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +.|++|..|+++      +.+|+|++||++|++|+++|.+
T Consensus       324 ~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        324 DRTAAPRELHVV------DELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             ccccCCCEEEEe------cCCCCCCCccccHHHHHHHhhc
Confidence            999999999987      4569999999999999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3e-37  Score=348.81  Aligned_cols=410  Identities=22%  Similarity=0.230  Sum_probs=333.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...++.+.|...+.+.|+++|+.+.   +      .++||.++..+++++|+.|.+.|+++++.|++++++++++++.++
T Consensus       225 ~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l  295 (642)
T COG1020         225 LRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALL  295 (642)
T ss_pred             ccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHH
Confidence            3478999999999999999888763   2      579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      |++++|+.++|++|.++.+++..+++.++++.++++..........     +.    +..+...                
T Consensus       296 ~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~----------------  350 (642)
T COG1020         296 AVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL----------------  350 (642)
T ss_pred             HHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc----------------
Confidence            9999999999999999999999999999999999984322211000     00    1111000                


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                          .......+ ......+++.+|++|||||||.||||..+|+++.+.+.+....+     .+...|+++...++.+..
T Consensus       351 ----~~~~~~~~-~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~  420 (642)
T COG1020         351 ----SEIPDTDP-IPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDA  420 (642)
T ss_pred             ----ccCCccCc-ccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccch
Confidence                00000001 12234568999999999999999999999999999887776666     788999999999998777


Q ss_pred             HHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .....+.++..|+++++.+.    ++..+...+.++++|++..+|..+..++..........                  
T Consensus       421 ~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~------------------  482 (642)
T COG1020         421 SVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLIS------------------  482 (642)
T ss_pred             hHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccC------------------
Confidence            77788999999999999875    89999999999999999999999988865311000000                  


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCceeeecCCCCCCCceecccCCCcc
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                               ..+.+|.+++||+.++..+...+....  ...+.+.||+||+.............
T Consensus       483 -------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~  537 (642)
T COG1020         483 -------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAEL  537 (642)
T ss_pred             -------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEccccc
Confidence                                     002589999999999999998877655  46899999999977765544432221


Q ss_pred             c-cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCCcEEE
Q 006115          434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~-~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~-g~~~TGDl~~~~~~G~l~~  511 (660)
                      . ..++|.|+++..+.+++ ....  .++.+..||+++.|.+++.||+++++.+...|.. .+|+|||++++..+|.+.+
T Consensus       538 ~~~~piG~p~~n~~~~ild-~~~~--~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~  614 (642)
T COG1020         538 ESRVPIGRPVANTQLYILD-QGLR--PLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEY  614 (642)
T ss_pred             CCCCCcceeeCCCeEEEEC-CCCC--cCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEE
Confidence            1 36899999999999998 4444  5555678999999999999999999999999965 4999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCc
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAP  540 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p  540 (660)
                      +||.|+++|+ .|.+|.+.+||..+.++|
T Consensus       615 lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         615 LGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             eccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            9999999998 699999999999998875

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=7.6e-36  Score=318.07  Aligned_cols=516  Identities=15%  Similarity=0.138  Sum_probs=363.4

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCChhhHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      .+|.|+|+++++++||.+|+...   ++.+..-.++||.+|.+++.+++.+|+.. .+++||+|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            78999999999999999999987   88888888999999999999999999977 699999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCCh------hhHHHHhhcccceEEEEccchhhhhhccccccccCcc---EEEEecCCcHHHHHHHh
Q 006115          121 CNALSLICVPLYDTLGP------GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR---VMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~  191 (660)
                      |+.+|++++|+.|....      ..+..+++.+++..|+++.+....+.+.......+..   .++.+++...       
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-------  919 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-------  919 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence            99999999999875432      4678899999999999999876655443322111111   1112222111       


Q ss_pred             hCCceeeeHHHHHhcCcc--CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEE
Q 006115          192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (660)
                             +|..-..+-..  ...+.....+..+|++.|.--++|+--++.++|.++++.+..+++.+     .+.+..-+
T Consensus       920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl  987 (1363)
T KOG3628|consen  920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL  987 (1363)
T ss_pred             -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence                   11111111111  12223344678899999999999999999999999999999999988     67777777


Q ss_pred             EEecChhhHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006115          270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (660)
Q Consensus       270 l~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (660)
                      +.+.+.+.+.|+. +++..+|+|.+.+++++     ++..|+..++++++.-++.+-..+..+.+.+...-+...     
T Consensus       988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~----- 1062 (1363)
T KOG3628|consen  988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS----- 1062 (1363)
T ss_pred             EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh-----
Confidence            7777777767765 58899999999888875     899999999999999999988888877654332221111     


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CC---ceeeecCC
Q 006115          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGL  417 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~  417 (660)
                                               ....+.        ++ ..++..-++....+...|.+.+   |.   .+...|+.
T Consensus      1063 -------------------------~~gnn~--------s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1063 -------------------------KRGNNT--------SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred             -------------------------hhhccc--------cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence                                     000000        12 3444445555556666665554   21   13333333


Q ss_pred             CCCCCceecccC--------------------------CCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc
Q 006115          418 TETCGPTTVCFP--------------------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (660)
Q Consensus       418 tE~~~~~~~~~~--------------------------~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~  471 (660)
                      .=--.++.....                          +........|...+++++.|++ |++. .++.+|+.||||++
T Consensus      1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~ 1186 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVN 1186 (1363)
T ss_pred             cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEec
Confidence            211111111000                          0011223568888999999999 6654 78888999999999


Q ss_pred             cCCcccccCCCch-hhhhcc----------cCCccccCceEEECC------C----CcEEEEeccCCeeEcCCCeeecch
Q 006115          472 GKTLFSGYYKNPD-LTRESI----------IDGWFHTGDIGQILP------N----GVVKIIDRKKNLIKISQGEYVALE  530 (660)
Q Consensus       472 g~~~~~gy~~~~~-~~~~~f----------~~g~~~TGDl~~~~~------~----G~l~~~GR~~d~i~~~~G~~v~~~  530 (660)
                      |.+.+.+|+.-.+ .....|          ..+|.||||+|++..      +    .-||++|-+++.+.+ +|.+.+|.
T Consensus      1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~ 1265 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPS 1265 (1363)
T ss_pred             cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcc
Confidence            9998887775321 111122          135999999999842      2    359999999999998 79999999


Q ss_pred             hHHHHH-hcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCC-C
Q 006115          531 YLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR-G  608 (660)
Q Consensus       531 ~iE~~l-~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~  608 (660)
                      +||..+ +.||.|.+|+|+...  ..+|.+++...+.            ++.+          +...|..    ..|. +
T Consensus      1266 DIE~TV~~vH~~I~~cavF~~~--glvVvviE~~gq~------------~~~~----------LvPlIv~----~vL~eH 1317 (1363)
T KOG3628|consen 1266 DIETTVERVHPSIGGCAVFQAT--GLVVVVIECHGQQ------------ELAD----------LVPLIVN----VVLEEH 1317 (1363)
T ss_pred             hHHHHHHHhcccccceeeEeeC--CeEEEEEEecCch------------hHhh----------hhHHHHH----HHHhhc
Confidence            999999 689999999999853  4666666666522            1111          1111211    1222 3


Q ss_pred             ceeeeEEEEecCCCCCCCCccccccccchHHHHHHH-HHHHHHHHh
Q 006115          609 FEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY-QVEIDQLYE  653 (660)
Q Consensus       609 ~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~-~~~l~~~y~  653 (660)
                      +.+...+.||+ +   ..+|+++.|..+|..+++.| ..+|+.+|.
T Consensus      1318 ~iI~dvV~fV~-~---G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1318 YIILDVVAFVD-K---GVFPRNSRGEKQRAHILDSWLAGKLDPIYV 1359 (1363)
T ss_pred             ceEEEEEEEec-C---CccccCCchhhHHHHHHHHHHhcccceeee
Confidence            44556666665 3   88999999999999999998 457777663

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=2.3e-35  Score=307.25  Aligned_cols=287  Identities=18%  Similarity=0.134  Sum_probs=220.4

Q ss_pred             CCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC--CCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEE
Q 006115          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (660)
Q Consensus       220 ~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~  296 (660)
                      +..++++|||||||.||+|.+||+++.+.+..+...+     ++  ...+++++.+|++|.+|+.+ ++.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            5578999999999999999999999998887766555     44  34468999999999999765 5677889999988


Q ss_pred             ecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Q 006115          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (660)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (660)
                      ... ++..+++.++.+  |+++++|++++.+.+..    .                                        
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~----------------------------------------  203 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y----------------------------------------  203 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c----------------------------------------
Confidence            765 777888877654  89999999998875420    0                                        


Q ss_pred             HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCC
Q 006115          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE  454 (660)
Q Consensus       376 ~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~  454 (660)
                           ..++++. ++||+++++++.+.+++. + ..+++.||+||++++++....      ...|.++|+.++.+ +  +
T Consensus       204 -----~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~-~--~  267 (386)
T TIGR02372       204 -----RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFA-D--T  267 (386)
T ss_pred             -----CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccC-C--C
Confidence                 0136775 678999999999999875 5 469999999999876543221      34567777765532 1  1


Q ss_pred             CCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHH
Q 006115          455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (660)
Q Consensus       455 ~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~  534 (660)
                      +.          +   .|+                  ..|++|||++++|.+|++++.||.||+|++ +|++|+|.+||+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~  315 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD  315 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence            10          0   011                  125889999999999999999999999996 899999999999


Q ss_pred             HHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeE
Q 006115          535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKG  614 (660)
Q Consensus       535 ~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~  614 (660)
                      +|.+||.|.+|+|+..  ...+.|+|+++++.                  +.    +.+.+.|.++++ .+|+.|++|..
T Consensus       316 ~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~------------------~~----~~~~~~l~~~~~-~~L~~~~~P~~  370 (386)
T TIGR02372       316 ILERNPRVRAAAVRLD--GRRLKAFIVVAEDA------------------DE----AELEIELRATAA-RHLPAPARPDR  370 (386)
T ss_pred             HHHcCCCceEEEEEcC--CceEEEEEEECCCC------------------Ch----HHHHHHHHHHHH-HhCCCCCCCcE
Confidence            9999999999999743  45788888877532                  11    122345555554 67999999999


Q ss_pred             EEEecCCCCCCCCccccccccc
Q 006115          615 VILDPRPFDMERDLVTATLKKK  636 (660)
Q Consensus       615 i~~~~~~~~~~~~P~t~~GKv~  636 (660)
                      +.++      +.+|+|++||++
T Consensus       371 i~~~------~~lP~t~~GKi~  386 (386)
T TIGR02372       371 FRFG------TELPRTGAGKLA  386 (386)
T ss_pred             EEEc------ccCCCCCCCCcC
Confidence            9987      445999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=6.9e-33  Score=296.23  Aligned_cols=331  Identities=18%  Similarity=0.156  Sum_probs=230.5

Q ss_pred             CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH-HHHHHHHhhcCcEEEE
Q 006115          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY  296 (660)
Q Consensus       218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~l~~G~~~v~  296 (660)
                      ..++++++++||||||.||++.+||.++..........+..  .++.++|++++..++.+..+ +...+.+...|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678899999999999999999999987664443222211  16778899988766554333 2234456778999887


Q ss_pred             ecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Q 006115          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (660)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (660)
                      ++. ++..+++.|++++||+++++|+++..|++.+.......                                      
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~--------------------------------------  192 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP--------------------------------------  192 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence            765 78999999999999999999999999876433210000                                      


Q ss_pred             HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCC--ceecccCCCccccCccCCCc--cCeeEEeee
Q 006115          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG--PTTVCFPDEMCMVGTAGPVS--VYSELRLEE  451 (660)
Q Consensus       376 ~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~--~~~~~~~~~~~~~~~~G~~~--~~~~v~iv~  451 (660)
                           ...++|.++++||++++++.+.+++.||+++++.||+||+++  +...+..      ...|.++  ++..++|+|
T Consensus       193 -----~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd  261 (422)
T TIGR02155       193 -----AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIID  261 (422)
T ss_pred             -----ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc------cCCCceEecCeeEEEEEC
Confidence                 003899999999999999999999999999999999999853  2221211      1122233  356778888


Q ss_pred             cCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-C-----cEEEEeccCCeeEcCCCe
Q 006115          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGE  525 (660)
Q Consensus       452 ~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~-G-----~l~~~GR~~d~i~~~~G~  525 (660)
                       ++++ .+++.|+.|||++++.            +...|..+||+|||+++++++ |     .+++.||.+|+|++ +|.
T Consensus       262 -~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~  326 (422)
T TIGR02155       262 -PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGV  326 (422)
T ss_pred             -CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCE
Confidence             4433 4556788999999973            233455789999999999765 4     46899999999997 799


Q ss_pred             eecchhHHHHHhcCcCcc-eEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHH
Q 006115          526 YVALEYLENVYCVAPIIE-DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE  602 (660)
Q Consensus       526 ~v~~~~iE~~l~~~p~V~-~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  602 (660)
                      +|+|.+||.+|.+||+|. ++.+......  +.+.+.|+...+...        .       ...+-...+.++|.+.++
T Consensus       327 ~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~~~~~~~~~~~i~~~~~  391 (422)
T TIGR02155       327 NVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYT--------L-------RLHEQASLLAGEIQHTIK  391 (422)
T ss_pred             EECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCccc--------c-------cchHHHHHHHHHHHHHHH
Confidence            999999999999999998 5555443322  366666666543200        0       001112233445555554


Q ss_pred             HCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006115          603 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  638 (660)
Q Consensus       603 ~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  638 (660)
                       ..+..+.   .|.++.    +++||+|+ ||++|.
T Consensus       392 -~~~~~~~---~v~~~~----~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       392 -QEVGVSM---DVHLVE----PGSLPRSE-GKARRV  418 (422)
T ss_pred             -hccCcEE---EEEEEC----CCCccCCC-CCceEE
Confidence             5555542   344442    36789988 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=2.2e-29  Score=278.63  Aligned_cols=505  Identities=19%  Similarity=0.137  Sum_probs=327.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +.++...+...+...|.+++..+.+. ....+...+.||.+....++.+++.|...|..+|+.|++++..+.++++..++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~  113 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA  113 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence            46777888999999999998887654 33445567899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCC----hhh---HHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006115          121 CNALSLICVPLYDTLG----PGA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~----~~~---l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++.|..+++++|.++    ++.   +.+.+......++.-.+..     ..........                    
T Consensus       114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~-----~~~~~~~~~~--------------------  168 (1032)
T KOG1178|consen  114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNII-----DILLNSLFPK--------------------  168 (1032)
T ss_pred             hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhH-----HHHhhccccc--------------------
Confidence            9999999999999998    332   2222222211111110000     0000000000                    


Q ss_pred             CceeeeH-HHHHhcCccCC-ccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEE
Q 006115          194 GIKPYSW-DEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (660)
Q Consensus       194 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (660)
                       ..+... +.+........ .......+|..+++.||||+||.||+|..+|..++++..+....+     .++..+++-.
T Consensus       169 -~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~  242 (1032)
T KOG1178|consen  169 -LSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTF  242 (1032)
T ss_pred             -cchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhh
Confidence             000011 11111111111 122345677899999999999999999999999999998877766     6666776522


Q ss_pred             ecChhhHHHHH-HHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006115          272 FLPLAHILDRV-IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       272 ~~p~~~~~g~~-~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ....+...... .....+..|..+..+..    ++..+...+++++++..+.+|++.++++...........        
T Consensus       243 ~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~--------  314 (1032)
T KOG1178|consen  243 KTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLE--------  314 (1032)
T ss_pred             hheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhh--------
Confidence            22221111222 23334555665555543    589999999999999999999999888765332100000        


Q ss_pred             HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcee
Q 006115          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTT  425 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~  425 (660)
                           ....++     .             +. ...+.|+....+|++....+...+...+ -.-...-|++++..+..+
T Consensus       315 -----~~~~~~-----d-------------l~-~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s  370 (1032)
T KOG1178|consen  315 -----HAFSLS-----D-------------LL-TKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVS  370 (1032)
T ss_pred             -----hhhhcc-----c-------------cc-ccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCcccee
Confidence                 000000     0             00 0014899999999999999988665544 222333488888777665


Q ss_pred             cccCCCc-------------cccCccCCCccCeeEEeeecCCCCC--CCCCCCCCceEEEccCCcccccCCCchhhhhcc
Q 006115          426 VCFPDEM-------------CMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (660)
Q Consensus       426 ~~~~~~~-------------~~~~~~G~~~~~~~v~iv~~~~~~~--~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f  490 (660)
                      ...-...             .....+|.+..   +.... ..++.  ..++.++.|.-...+..+..| +..++.....+
T Consensus       371 ~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~---~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~  445 (1032)
T KOG1178|consen  371 YDDFSPSKVLLTNENVYSVPKFDSIIGSLTV---LESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNF  445 (1032)
T ss_pred             HHhhCcccceecceeEEeccchhhccCCCcc---eeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcc
Confidence            4322110             00011121111   11111 11111  111122233333334444455 23333322222


Q ss_pred             ------cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 006115          491 ------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  561 (660)
Q Consensus       491 ------~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~  561 (660)
                            .+.+|+|||+|+..++|-+.++||.|++||+ +|.++...+|+.++..||.|.++++....++   +.+++|++
T Consensus       446 ~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv  524 (1032)
T KOG1178|consen  446 LTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVV  524 (1032)
T ss_pred             cccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEe
Confidence                  2458999999999899999999999999997 6999999999999999999999999886644   37999999


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      .....                   ....    ...|+.+++ ..|+.|++|..++.+      +++|+|++||||+++|.
T Consensus       525 ~~~~~-------------------~~~~----~~~i~~~l~-~~La~y~vPs~~V~l------~~vPl~~~GKvDkkaL~  574 (1032)
T KOG1178|consen  525 ERGGS-------------------KSVL----IRDIRNYLK-KELASYMLPSLVVPL------AKVPLNPNGKVDKKALL  574 (1032)
T ss_pred             ccCCC-------------------Cchh----HHHHHHhhc-ccccceecceEEEEh------hhCCcCCCCCcChhhhh
Confidence            98764                   1111    455666665 889999999978776      66799999999999999


Q ss_pred             HHHH
Q 006115          642 IYYQ  645 (660)
Q Consensus       642 ~~~~  645 (660)
                      +.+.
T Consensus       575 ~~~s  578 (1032)
T KOG1178|consen  575 EYNS  578 (1032)
T ss_pred             hhhh
Confidence            8443

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.95  E-value=7.8e-26  Score=241.91  Aligned_cols=258  Identities=17%  Similarity=0.135  Sum_probs=186.5

Q ss_pred             CCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEE
Q 006115          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVG  295 (660)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v  295 (660)
                      .+.++++.+.+||||||.||+|.+||.++..........+..  .++.++|+++...++.+..+... .+.+...|++++
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi  160 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII  160 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence            346688899999999999999999999988766554433221  26788999999988877655543 455577788765


Q ss_pred             EecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Q 006115          296 YYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (660)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (660)
                      ... .....++.|+++++|.+.++|+.+..|++.+.+.....                                      
T Consensus       161 ~~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~--------------------------------------  201 (445)
T TIGR03335       161 PEG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP--------------------------------------  201 (445)
T ss_pred             cCC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence            433 44567899999999999999998887765433211000                                      


Q ss_pred             HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCC
Q 006115          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM  455 (660)
Q Consensus       376 ~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~  455 (660)
                           ...++|.+++|||++++++.+.+.+.||+++++.||+||++.. ..+...     .....+.+.+.++|+| +++
T Consensus       202 -----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~~-----~g~h~~~d~~~vEIvD-p~~  269 (445)
T TIGR03335       202 -----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQAV-----AGLHVPEDLVHLDVYD-PRH  269 (445)
T ss_pred             -----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecCC-----CCccccCCceEEEEEc-CCC
Confidence                 0038999999999999999999999999999999999998632 222110     1122333567889998 654


Q ss_pred             CCCCCCCCCCceEEEccCCcc---cccCCCchhhhhcccCCccccCceEEECC-C----C----cEEEEeccCCeeEcCC
Q 006115          456 GYSPLDDPPCGEVCVRGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIKISQ  523 (660)
Q Consensus       456 ~~~~~~~g~~GEi~v~g~~~~---~gy~~~~~~~~~~f~~g~~~TGDl~~~~~-~----G----~l~~~GR~~d~i~~~~  523 (660)
                      + .+++.|+.|||++++-...   .+.    ...       -|+|||++.+.. +    |    ++...||.||++++ +
T Consensus       270 ~-~~vp~Ge~GELvvT~L~~~~~r~~~----Pli-------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~  336 (445)
T TIGR03335       270 Q-RFLPDGECGRIVLTTLLKPGERCGS----LLI-------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-S  336 (445)
T ss_pred             C-CCCcCCCceEEEEEecCCCCccCCc----eEE-------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-C
Confidence            4 4567889999999984321   000    001       189999998732 2    2    24457999999999 7


Q ss_pred             CeeecchhHHHHHhcCc
Q 006115          524 GEYVALEYLENVYCVAP  540 (660)
Q Consensus       524 G~~v~~~~iE~~l~~~p  540 (660)
                      |.+|+|.+||++|.+++
T Consensus       337 g~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       337 GVPFNRVDVERAVFQRE  353 (445)
T ss_pred             CEEeCHHHHHHHHhccC
Confidence            99999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=2.5e-24  Score=207.71  Aligned_cols=223  Identities=15%  Similarity=0.041  Sum_probs=163.0

Q ss_pred             HHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCChhhHHHHHHHHHhCCC
Q 006115           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (660)
Q Consensus        48 l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  126 (660)
                      |.++++++|+++|+++.   ++.+++.+++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999864   3322123679999999999999999998 7999999999999999999999999999999


Q ss_pred             eEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHhc
Q 006115          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  206 (660)
Q Consensus       127 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (660)
                      +++|++             .+++++++++++......      ..  +.++.+........ ..........+|......
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~------~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA------GS--GEVVALSLDPLGRR-VAGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc------cC--CceEEEeccccccC-CCCCCCCcccchhhhhhc
Confidence            999995             678999999987766532      11  12222211000000 000001122356555543


Q ss_pred             CccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-HH
Q 006115          207 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE  285 (660)
Q Consensus       207 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~  285 (660)
                      ......+.....++|++.++||||+         +|.+++...    ..+     +++++|+++ .+|++|..|+.. ++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            2122211213466899999999986         566655554    233     788999999 999999999875 67


Q ss_pred             HHhhcCcEEEEecC-ChHHHHHHhhhhcCe
Q 006115          286 YFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (660)
Q Consensus       286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (660)
                      .+++.|+++++.+. ++..+++.|++++||
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            78999999999876 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.92  E-value=4.3e-23  Score=208.95  Aligned_cols=285  Identities=22%  Similarity=0.204  Sum_probs=211.7

Q ss_pred             CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh-hHHHHHHHHHHhhcCcEE
Q 006115          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASV  294 (660)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~-~~~g~~~~~~~l~~G~~~  294 (660)
                      ..+.++...|-.||||||+|+.+.+|+..+......+...+...  +...+|++....-+. +..|+.....+-..|+++
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v  163 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV  163 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence            34556677788899999999999999999888888877766433  677888886665422 122233344455577777


Q ss_pred             EEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 006115          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (660)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (660)
                      +-... +....+.+++++++|++.++|+.+..|++.+.+.....                               .+   
T Consensus       164 ip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~-------------------------------~~---  209 (438)
T COG1541         164 IPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP-------------------------------DK---  209 (438)
T ss_pred             EccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh-------------------------------hh---
Confidence            66655 89999999999999999999999999988766542000                               00   


Q ss_pred             HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCce-ecccCCCccccCccCCCccCeeEEeeec
Q 006115          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (660)
Q Consensus       374 ~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~-~~~~~~~~~~~~~~G~~~~~~~v~iv~~  452 (660)
                               .+|+.+++|+|+++++..+.+.+.||+.+++.||+||..+.. ..|....     .....-+...+.++| 
T Consensus       210 ---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~d-  274 (438)
T COG1541         210 ---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-----GLHIWEDHFIFEIVD-  274 (438)
T ss_pred             ---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-----CCCcchhhceeeeec-
Confidence                     389999999999999999999999999999999999997774 3333211     223345677888998 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC----Cc-----EEEEeccCCeeEcCC
Q 006115          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKISQ  523 (660)
Q Consensus       453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~----G~-----l~~~GR~~d~i~~~~  523 (660)
                      |+++ ..+++|+.|||+++.-.  +.          .++==-|+|||+..+.++    |+     -.+.||.||++++ .
T Consensus       275 P~t~-e~l~dge~GelV~T~L~--~~----------~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~  340 (438)
T COG1541         275 PETG-EQLPDGERGELVITTLT--KE----------GMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-R  340 (438)
T ss_pred             CCcC-ccCCCCCeeEEEEEecc--cc----------CcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-C
Confidence            6655 56667899999998732  10          000002899999999763    32     5789999999998 5


Q ss_pred             CeeecchhHHHHHhcCcCcc---eEEEEecCCCCeEEEEEEcChh
Q 006115          524 GEYVALEYLENVYCVAPIIE---DIWVYGDSLKSMLVAVVVPCEE  565 (660)
Q Consensus       524 G~~v~~~~iE~~l~~~p~V~---~~~v~~~~~~~~~~a~v~~~~~  565 (660)
                      |.+|+|..||..|.+++.+.   +.++......+.+.+-|+..++
T Consensus       341 G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         341 GVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             CEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            99999999999999999999   4444442233577778887753

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.89  E-value=2.9e-21  Score=207.43  Aligned_cols=535  Identities=14%  Similarity=0.109  Sum_probs=347.6

Q ss_pred             eeccccCCCCCCCC----CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHH-HHHHcCCC
Q 006115           25 YRNLLASNGFPSVD----SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAE   99 (660)
Q Consensus        25 ~r~~~~~~~~~~~~----~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~-~L~~~gv~   99 (660)
                      .|-..++.+.|.-+    ..+..+..+++++-.+++..+|.+..   |.++. ..++||..+..++.++|+ .|-+.|+.
T Consensus        73 p~i~~~~~~~~~ntsss~~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~  148 (1363)
T KOG3628|consen   73 PRIARFPINDPRNTSSSMMALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLK  148 (1363)
T ss_pred             ccccccccCCCCCCchhhhhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCC
Confidence            34444555555222    33556777777777889999999998   77766 899999999999999999 55577999


Q ss_pred             CCCEEEEEeCCh--hhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcccc-ccccCccEE
Q 006115          100 PGCRVGIYGANC--PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVM  176 (660)
Q Consensus       100 ~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~i  176 (660)
                      ++|+|.+++..+  +++++..++|...|.+++|+.+..+.+++..+++....+++++.......+..... ....+.  +
T Consensus       149 ~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~--v  226 (1363)
T KOG3628|consen  149 PGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKA--V  226 (1363)
T ss_pred             CCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHH--H
Confidence            999999999887  89999999999999999999999999999999999999999998877665533221 000000  0


Q ss_pred             EEecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccc
Q 006115          177 VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (660)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~  256 (660)
                                         .++...++......+....+..... .++|-||++++|.--|++++|. ++.....+....
T Consensus       227 -------------------~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~  285 (1363)
T KOG3628|consen  227 -------------------AWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIP  285 (1363)
T ss_pred             -------------------HhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhcc
Confidence                               0000111110000111122222333 8999999999999999999998 555444432221


Q ss_pred             ---------------ccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEE
Q 006115          257 ---------------DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLL  316 (660)
Q Consensus       257 ---------------~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l  316 (660)
                                     ...-.+....++++....+....|+++ .+.++++|.+.+.++.    .+..+...+.+++.+++
T Consensus       286 nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~  365 (1363)
T KOG3628|consen  286 NTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWS  365 (1363)
T ss_pred             CcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEE
Confidence                           111123456788888888888888876 6788999999888775    88999999999999999


Q ss_pred             EechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCC
Q 006115          317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS  396 (660)
Q Consensus       317 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~  396 (660)
                      ......+.+......+.....                                  +.+.+-.....++||.+++....++
T Consensus       366 ltd~~~Lkq~~~ny~~~p~a~----------------------------------~s~~k~~t~d~sslk~C~Vtc~~vd  411 (1363)
T KOG3628|consen  366 LTDYAGLKQPVYNYQEDPKAT----------------------------------LSFKKYKTPDLSSLKGCMVTCTAVD  411 (1363)
T ss_pred             eecccccCcccccccCCcccc----------------------------------cchhhccCCCccceeeeEEeeeecc
Confidence            987666665543332211100                                  1111112223469999999999999


Q ss_pred             HHHHHHHHHhc----CCc------------------eeeecCCCCCCCceecccCC-------C----------------
Q 006115          397 TEVEEFLRVTC----CAF------------------LVQGYGLTETCGPTTVCFPD-------E----------------  431 (660)
Q Consensus       397 ~~~~~~~~~~~----~~~------------------v~~~YG~tE~~~~~~~~~~~-------~----------------  431 (660)
                      .+......+.+    |..                  ....=++.|.+......+..       +                
T Consensus       412 ~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~  491 (1363)
T KOG3628|consen  412 TEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVD  491 (1363)
T ss_pred             hHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEc
Confidence            88765544332    211                  11222334444433222210       0                


Q ss_pred             ------ccccCccCCCccC-eeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------------
Q 006115          432 ------MCMVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------  491 (660)
Q Consensus       432 ------~~~~~~~G~~~~~-~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-------------  491 (660)
                            .....++|..++| +.+.+++  ++....|-.+++|||||.++++..+||.-+..|...|.             
T Consensus       492 ~e~~is~~s~kd~~~i~~g~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n  569 (1363)
T KOG3628|consen  492 TEDDISSLSVKDVLCIMPGDATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSN  569 (1363)
T ss_pred             chhhhhhcCccccceecccceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCcc
Confidence                  0112356666665 3444444  55666777889999999999999999988888877772             


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecc----------hhHHHHHhcCcCcceEEEEecCCCCeEEEEEE
Q 006115          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL----------EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV  561 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~----------~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~  561 (660)
                      .-|.|||-+|++. +|.+||+|-++|++.--.|..++.          +-++.+++..+.|.++.+|-   .+.++.+++
T Consensus       570 ~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~  645 (1363)
T KOG3628|consen  570 VPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVL  645 (1363)
T ss_pred             chhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEE
Confidence            1289999999996 666777776666654323554432          33566668888999999987   334444444


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      -++....         +      +.-++...+.+.+...   +++..|.    +.+++    -+++|||+.|-+.-...+
T Consensus       646 esP~a~e---------~------~~~q~~~~v~q~l~~i---Hqv~vyC----ilivP----~~tLPrt~~~Gi~~~~~k  699 (1363)
T KOG3628|consen  646 ESPDATE---------E------NSFQWMSRVFQALDSI---HQVGVYC----ILIVP----ANTLPRTPLGGIHNNECK  699 (1363)
T ss_pred             eCcchhh---------h------hhhhHHHHHHHHHHHH---hcccceE----EEEec----cccCCCccccccccHHHH
Confidence            4444311         0      1111222333333332   3454543    44443    378999999999999999


Q ss_pred             HHHHH-HHHHHH
Q 006115          642 IYYQV-EIDQLY  652 (660)
Q Consensus       642 ~~~~~-~l~~~y  652 (660)
                      ++|.+ .|...|
T Consensus       700 ~~F~~G~L~~~~  711 (1363)
T KOG3628|consen  700 QAFLEGSLPPSY  711 (1363)
T ss_pred             HHHHcCCCCcce
Confidence            99864 444333

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=4.1e-18  Score=173.80  Aligned_cols=116  Identities=15%  Similarity=0.038  Sum_probs=95.9

Q ss_pred             cccCCccccCceEEE-CCCCcEEEEeccCCeeEcCCC---eeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 006115          489 SIIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  561 (660)
Q Consensus       489 ~f~~g~~~TGDl~~~-~~~G~l~~~GR~~d~i~~~~G---~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~  561 (660)
                      .+.+|||+|||+|++ |++|+|++.||.+      +|   ++|+|. ||++|.+||+|.||+|++.+++   +.++|+|+
T Consensus       205 ~~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv  277 (365)
T PRK09188        205 LPSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVE  277 (365)
T ss_pred             cccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEE
Confidence            347899999999998 7999999999997      57   799999 9999999999999999998766   37899998


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      +....                  +.        ++|.++++ ..||. ++|+.+.+++      .+|+|++||++|++|+
T Consensus       278 ~~~~~------------------~~--------~el~~~l~-~~L~~-kvP~~v~~v~------~lP~t~~GKi~R~~Lr  323 (365)
T PRK09188        278 AELPA------------------DE--------KSLRARLA-GAKPP-KPPEHIQPVA------ALPRDADGTVRDDILR  323 (365)
T ss_pred             ECCCC------------------CH--------HHHHHHHH-hhchh-cCCcEEEEEC------CCCCCCCCCccHHHHH
Confidence            76321                  11        23444443 78999 9999999984      4599999999999999


Q ss_pred             HHHH
Q 006115          642 IYYQ  645 (660)
Q Consensus       642 ~~~~  645 (660)
                      +...
T Consensus       324 ~~~~  327 (365)
T PRK09188        324 LIAM  327 (365)
T ss_pred             HHhh
Confidence            8763

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.74  E-value=2.4e-15  Score=157.32  Aligned_cols=258  Identities=16%  Similarity=0.154  Sum_probs=164.3

Q ss_pred             EEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEec-ChhhHHHHHHHHHHhhc-CcEEEEec--
Q 006115          223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL-PLAHILDRVIEEYFFRR-GASVGYYH--  298 (660)
Q Consensus       223 a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~-p~~~~~g~~~~~~~l~~-G~~~v~~~--  298 (660)
                      ..+..||||||.|-.+..+................  +.++..++++.... .-.+.+..      +.. ...+..++  
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~--~~g~~~g~r~a~~~~~~~~ly~~------~~~~~~~~~~~~l~  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL--PDGLFAKHRIAFFLRADNNLYQS------VNNRWISLDFFDLL  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC--ccccccCCcEEEEEccChhHHHH------HHhccceeeecCCC
Confidence            45677999999999999998876544433322221  12444555444432 11122211      111 11122232  


Q ss_pred             CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 006115          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (660)
Q Consensus       299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (660)
                      .+.+.+++.|++++|+++.++|+.+..|++...+...  .                                        
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~----------------------------------------  211 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T----------------------------------------  211 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C----------------------------------------
Confidence            2789999999999999999999999999876543210  0                                        


Q ss_pred             HHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEE--eeecCCCC
Q 006115          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR--LEEVPEMG  456 (660)
Q Consensus       379 ~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~--iv~~~~~~  456 (660)
                          .+++.++++||.++++..+.+++.||++|++.||+|| |.++..|..+.      ...-...+-++  ++| +++ 
T Consensus       212 ----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~------lHl~ed~~~vE~~ivD-~~~-  278 (430)
T TIGR02304       212 ----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT------LHLNEDLVHIEKQYLD-EHK-  278 (430)
T ss_pred             ----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC------EEEccccEEEEeeEEC-CCC-
Confidence                2789999999999999999999999999999999999 55555443322      22112223333  666 332 


Q ss_pred             CCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC----Cc----E-EEEeccCCeeEc--CCCe
Q 006115          457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQGE  525 (660)
Q Consensus       457 ~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~----G~----l-~~~GR~~d~i~~--~~G~  525 (660)
                              .++.+|++-      .+..-.--      -|+|||++.+..+    |.    + .+.||.+|++++  .+|.
T Consensus       279 --------~~~~ViT~L------~n~~~PlI------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~  338 (430)
T TIGR02304       279 --------RFVPIITDF------TRTTQPIV------RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGD  338 (430)
T ss_pred             --------ceEEEEecC------CCccceEE------eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCC
Confidence                    134455542      21110000      1899999888543    32    3 488999999984  3555


Q ss_pred             ee--cchhHHHHH-hcCcCcceEEEEecCCCCeEEEEEEcCh
Q 006115          526 YV--ALEYLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (660)
Q Consensus       526 ~v--~~~~iE~~l-~~~p~V~~~~v~~~~~~~~~~a~v~~~~  564 (660)
                      .+  +|..++.++ ...++|.+..++... .+.+...++...
T Consensus       339 ~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~  379 (430)
T TIGR02304       339 EQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL  379 (430)
T ss_pred             eEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence            54  888898885 567899999888765 444444555443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.84  E-value=3.5e-07  Score=93.97  Aligned_cols=233  Identities=18%  Similarity=0.208  Sum_probs=135.8

Q ss_pred             CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCC-CCcEEEEecChhh---HHHH--HHHHHHhhcC
Q 006115          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFLPLAH---ILDR--VIEEYFFRRG  291 (660)
Q Consensus       218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~p~~~---~~g~--~~~~~~l~~G  291 (660)
                      ..+++..++-||||||.|--+.+.+..+......+...+..+. +.. ..-.++...|-..   .++.  ...+..+..+
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~-~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFL-GPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhc-ccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            3456677888999999987777777666655544443332211 111 1223333334322   1111  1122233344


Q ss_pred             cEEEEecC---ChHHHHHHhh----hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCC
Q 006115          292 ASVGYYHG---DLNALRDDLM----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  364 (660)
Q Consensus       292 ~~~v~~~~---~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (660)
                      .. .+...   +...++..+.    +.++..+++.|.++-.++..+++......                          
T Consensus       166 ~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~--------------------------  218 (365)
T PF04443_consen  166 SR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR--------------------------  218 (365)
T ss_pred             ce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc--------------------------
Confidence            44 34432   5666665553    67789999999877766655443321111                          


Q ss_pred             cchhHHHHHHHHHHHHhCCcEeEEEEcc------CCCCHH-HHHHHHHhcCC----ceeeecCCCCCCCceecccCCCcc
Q 006115          365 ASPLADLLAFRKVKARLGGRLRLVISGG------APLSTE-VEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~slr~v~~~G------~~l~~~-~~~~~~~~~~~----~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                               +       .+..+.+-.||      +.++++ +.+.+.+.||+    .+++.||+||.......+....  
T Consensus       219 ---------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--  280 (365)
T PF04443_consen  219 ---------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--  280 (365)
T ss_pred             ---------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--
Confidence                     0       01333444444      457654 66778888887    6999999999887655543322  


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-------
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-------  506 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~-------  506 (660)
                            .++|.. +.+.| ++ +..+++.|+.|-|-+-++... .|            -+..-|.|+|.+..+       
T Consensus       281 ------~~~p~w-V~iRD-p~-tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~  338 (365)
T PF04443_consen  281 ------FHVPPW-VIIRD-PE-TLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRK  338 (365)
T ss_pred             ------ccCCCe-EEEEC-CC-CCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCcc
Confidence                  122323 66667 44 457788889999988776432 22            233669999988654       


Q ss_pred             -CcEEEEeccCCe
Q 006115          507 -GVVKIIDRKKNL  518 (660)
Q Consensus       507 -G~l~~~GR~~d~  518 (660)
                       .++.++||.+.-
T Consensus       339 g~~f~vlGR~~~a  351 (365)
T PF04443_consen  339 GKYFEVLGRADGA  351 (365)
T ss_pred             CCEEEEEeCCCCC
Confidence             269999998744

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.77  E-value=9.6e-09  Score=79.81  Aligned_cols=68  Identities=24%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             hHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCC
Q 006115          531 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR  607 (660)
Q Consensus       531 ~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  607 (660)
                      |||++|.+||+|.+|+|++.+++   ..++|++++ ..                             +.|+++++ .+||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~-----------------------------~~i~~~~~-~~l~   49 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DE-----------------------------EEIRDHLR-DKLP   49 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HH-----------------------------HHHHHHHH-HHS-
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-ee-----------------------------cccccchh-hhCC
Confidence            69999999999999999998755   489999988 21                             23334443 5699


Q ss_pred             CceeeeEEEEe--cCCCCCCCCccccccc
Q 006115          608 GFEHIKGVILD--PRPFDMERDLVTATLK  634 (660)
Q Consensus       608 ~~~~p~~i~~~--~~~~~~~~~P~t~~GK  634 (660)
                      .|++|+.+.++  ++     .+|+|++||
T Consensus        50 ~~~~P~~~~~v~~~~-----~lP~t~~GK   73 (73)
T PF13193_consen   50 PYMVPRRIRFVRLDE-----ELPRTPSGK   73 (73)
T ss_dssp             GGGS-SEEEEEEESS-----SEEBETTSS
T ss_pred             CcceeeEEEEccccC-----cCCCCCCCC
Confidence            99999544444  33     269999998

...

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.40  E-value=4.1e-06  Score=91.18  Aligned_cols=160  Identities=19%  Similarity=0.203  Sum_probs=92.8

Q ss_pred             CcEeEEEEccCCCCHHHHHHHHHhcC-C-ceeeecCCCCCCCceecccCCCccccCccCCCcc-CeeEEeeecCCCC---
Q 006115          383 GRLRLVISGGAPLSTEVEEFLRVTCC-A-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV-YSELRLEEVPEMG---  456 (660)
Q Consensus       383 ~slr~v~~~G~~l~~~~~~~~~~~~~-~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~-~~~v~iv~~~~~~---  456 (660)
                      ++|+.|.+.+..-.......+++.++ + .+...|++||+.+..-.. .+.     ..+.+.+ ..-.+.+++++..   
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~-----~~~~l~~~~~ffEFip~~~~~~~~  340 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PED-----PGYVLAPDSGFFEFIPVDEDEQNP  340 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC-------EEE-TTSSEEEEEE-STT----
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCC-----CceEeecCCeEEEEEeccCCcccc
Confidence            58998887777666777888888885 3 355699999964322221 111     1111111 1133444432221   


Q ss_pred             ---CC-----CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC--CC--cEEEEeccCCeeEcCCC
Q 006115          457 ---YS-----PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQG  524 (660)
Q Consensus       457 ---~~-----~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~--~G--~l~~~GR~~d~i~~~~G  524 (660)
                         ..     .+..|+.-||.|+..   .|.|+             |+.||..++..  ++  .+.|+||.+.++.+ .|
T Consensus       341 ~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g  403 (528)
T PF03321_consen  341 SEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG  403 (528)
T ss_dssp             ---SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred             cCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence               11     122355668888873   34443             89999999853  34  79999999999998 79


Q ss_pred             eeecchhHHHHHhcC-----cCcceEEEEec---CCCCeEEEEEEcChh
Q 006115          525 EYVALEYLENVYCVA-----PIIEDIWVYGD---SLKSMLVAVVVPCEE  565 (660)
Q Consensus       525 ~~v~~~~iE~~l~~~-----p~V~~~~v~~~---~~~~~~~a~v~~~~~  565 (660)
                      ++++-.+|++++.+.     -.+.+..+...   ..+...+.++++...
T Consensus       404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  404 EKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             eecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            999999999999653     34567777655   234567777777764

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.82  E-value=0.0019  Score=70.86  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=78.6

Q ss_pred             EeEEEEccCCCCHHHHHHHHHhc-CC-ceeeecCCCCCCCceecccCCCccccCccCCC--ccCeeEEeeecCCCCC---
Q 006115          385 LRLVISGGAPLSTEVEEFLRVTC-CA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--SVYSELRLEEVPEMGY---  457 (660)
Q Consensus       385 lr~v~~~G~~l~~~~~~~~~~~~-~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~--~~~~~v~iv~~~~~~~---  457 (660)
                      +.++..||..   .....++..+ +. .+...|++||+-+..-..+...   +.+.+..  ..+.-.+.+++++.+.   
T Consensus       307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~---p~~~~~~l~~~~~ffEFiP~~~~~~~~~  380 (597)
T PLN02249        307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCK---PSEVSYTIMPNMAYFEFLPHNHDGDGAL  380 (597)
T ss_pred             EEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCC---CCCcceEecCCcEEEEeeecccCCcccC
Confidence            5666666644   6666777666 33 3667999999654332211100   1111111  1234444444322111   


Q ss_pred             ---C-----CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCCe
Q 006115          458 ---S-----PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE  525 (660)
Q Consensus       458 ---~-----~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~  525 (660)
                         .     .+..|+.-||+|+.   ..|.|+             |+.||..++..    --++.|+||.+.++.+ .|+
T Consensus       381 ~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GE  443 (597)
T PLN02249        381 DETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESD  443 (597)
T ss_pred             CCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcceec-ccc
Confidence               1     12234556777776   334333             89999999853    2368999999999997 799


Q ss_pred             eecchhHHHHHhc
Q 006115          526 YVALEYLENVYCV  538 (660)
Q Consensus       526 ~v~~~~iE~~l~~  538 (660)
                      ++.-.+++.++.+
T Consensus       444 Kl~e~~v~~Av~~  456 (597)
T PLN02249        444 KTDEADLQKAVEN  456 (597)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.80  E-value=0.0018  Score=70.46  Aligned_cols=137  Identities=14%  Similarity=0.077  Sum_probs=83.3

Q ss_pred             CcEeEEEEccCCCCHHHHHHHHHhc-CCceee-ecCCCCCCCceecccCCCccccCccCCCccCe-eEEeeecCCCCCC-
Q 006115          383 GRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEMGYS-  458 (660)
Q Consensus       383 ~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~iv~~~~~~~~-  458 (660)
                      ++++.|.+.-..-.......++..+ |+++.. .||+||+-+..=..+.....  ......+|++ -.+.+++++++.. 
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~~~~~  370 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKNNGEV  370 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCCcccc
Confidence            7888888876666777777787666 566554 99999955432222111000  1111222222 2233332222100 


Q ss_pred             --------------------------CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEC----CCCc
Q 006115          459 --------------------------PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGV  508 (660)
Q Consensus       459 --------------------------~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~----~~G~  508 (660)
                                                .+..|+.-||+|+.   +.|.|+             ||.||+.++.    ..-.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n~~P~  434 (606)
T PLN02247        371 IHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFYNNAPQ  434 (606)
T ss_pred             cccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCce
Confidence                                      12234556888876   233332             8999998874    3457


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhc
Q 006115          509 VKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  538 (660)
                      +.|++|.+.+..+ .|+|..-.++-.++.+
T Consensus       435 ~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        435 FRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             EEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence            9999999999998 7999999998888854

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.59  E-value=0.0057  Score=66.48  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=94.5

Q ss_pred             hCCcEeEEEEccCCCCHHHHHHHHHhc-CCce-eeecCCCCCCCceecccCCCccccCccC-CCccCe-eEEeeecCCC-
Q 006115          381 LGGRLRLVISGGAPLSTEVEEFLRVTC-CAFL-VQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM-  455 (660)
Q Consensus       381 ~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v-~~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~v~iv~~~~~-  455 (660)
                      +=++++.|.+....-.......++..+ |+++ ...|++||+-+..=..+..   .+..+. ..+|++ -.+.++++++ 
T Consensus       302 LWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~---~p~~~sy~L~p~~~yFEFip~~~~~  378 (612)
T PLN02620        302 LWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLC---KPSEVSYTLIPTMAYFEFLPVHRNN  378 (612)
T ss_pred             hCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCC---CcccceeeecCCcEEEEEeeccCcc
Confidence            337889888877666677777777666 5664 4599999965433222211   111111 222222 2223321111 


Q ss_pred             C----------------C--C---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEC----CCCcEE
Q 006115          456 G----------------Y--S---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGVVK  510 (660)
Q Consensus       456 ~----------------~--~---~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~----~~G~l~  510 (660)
                      +                .  .   .+..|+.-||+|+.   +.|.|+             |+.||..++.    ..-.+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~~~  442 (612)
T PLN02620        379 GVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFS  442 (612)
T ss_pred             cccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCceEE
Confidence            0                0  0   12234556888876   233332             8999998874    334699


Q ss_pred             EEeccCCeeEcCCCeeecchhHHHHHhcCc--------CcceEEEEec--CCCCeEEEEEEcC
Q 006115          511 IIDRKKNLIKISQGEYVALEYLENVYCVAP--------IIEDIWVYGD--SLKSMLVAVVVPC  563 (660)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--------~V~~~~v~~~--~~~~~~~a~v~~~  563 (660)
                      |++|.+-+..+ .|+|..-.++-.++.+.-        .+.|......  ..+...+.+++++
T Consensus       443 Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El~  504 (612)
T PLN02620        443 FICRKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWELC  504 (612)
T ss_pred             EEeecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEEe
Confidence            99999999998 799999998887774322        1223332222  3355777888763

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.63  E-value=0.0098  Score=48.64  Aligned_cols=88  Identities=20%  Similarity=0.048  Sum_probs=51.0

Q ss_pred             CeeecchhHHHHHhcCcCcc-eEEEEec--CCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 006115          524 GEYVALEYLENVYCVAPIIE-DIWVYGD--SLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  600 (660)
Q Consensus       524 G~~v~~~~iE~~l~~~p~V~-~~~v~~~--~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  600 (660)
                      |.+|+|.+||++|.++|++. +..++-.  ...+.+...|...++.          ..+..   ...++.+.+.+.|++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~----------~~~~~---~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF----------SDDAE---DLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC----------CTTHH---HHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc----------CcchH---HHHHHHHHHHHHHHhh
Confidence            78999999999999999998 5444432  3335777778887753          10010   1245566666666665


Q ss_pred             HHHCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006115          601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  637 (660)
Q Consensus       601 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R  637 (660)
                      +.   +    .| .+.+++    ..++|++ .||..|
T Consensus        68 lg---v----~~-~V~lv~----~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   68 LG---V----RP-EVELVP----PGTLPRS-EGKAKR   91 (96)
T ss_dssp             HS---S-----E-EEEEE-----TT-S----SSSS-S
T ss_pred             cC---c----eE-EEEEEC----CCCccCC-CCcceE
Confidence            42   2    13 466664    3789998 678776

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=92.83  E-value=0.52  Score=49.31  Aligned_cols=88  Identities=9%  Similarity=-0.008  Sum_probs=74.0

Q ss_pred             EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChh--hHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEE
Q 006115           76 WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF  153 (660)
Q Consensus        76 ~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi  153 (660)
                      -+|+.|....+..+|..|...|..+||+|.....-++  .-...-+|+.++|+.++|+.+. .-+....++++.++.++.
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~  187 (438)
T COG1541         109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA  187 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence            5899999999999999999999999999988877332  2267889999999999999883 356677889999999999


Q ss_pred             Eccchhhhhhc
Q 006115          154 VQDKKVKELLS  164 (660)
Q Consensus       154 ~~~~~~~~~~~  164 (660)
                      +.+...-.+.+
T Consensus       188 ~tps~~l~lae  198 (438)
T COG1541         188 ATPSYLLYLAE  198 (438)
T ss_pred             EChHHHHHHHH
Confidence            99987765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	660
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-21
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-20
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-18
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-18
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		6e-18
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		9e-16
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-15
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-14
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-13
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-13
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		8e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		4e-11
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-09
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		3e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		4e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		3e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-04
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		8e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 149/569 (26%), Positives = 228/569 (40%), Gaps = 124/569 (21%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT-YKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V       V +T Y EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D  +    E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H+       +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
            T  AGVP V+  + + ++     L+ LRR                              
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLRR------------------------------ 297
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---- 428
                         LV+ G A   + +  F R+     + QGYGLTET       F    
Sbjct: 298 --------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSH 341
Query: 429 ------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYY 480
                  +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY
Sbjct: 342 LESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 481 KNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
            N + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++   LEN     
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGH 457
Query: 540 PIIEDIWVYG---DSLKSMLVAVVVPCEE 565
           P +++  V        +   +AVVVP  E
Sbjct: 458 PKVKEAAVVAIPHPKWQERPLAVVVPRGE 486

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 138/333 (41%), Gaps = 60/333 (18%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK  
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            +  S G  +    +EN     P + +  V G+
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 72/334 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR 
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K++I IS GE V    +E+V    P + ++ V G
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 255
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L+ G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 256 ----LICGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 290
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 291 LFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ 
Sbjct: 351 IT-PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 466
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 467 AGVAGLPDDDAGELPAAVVV 486

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 255
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L+ G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 256 ----LICGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 290
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 291 LFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ 
Sbjct: 351 IT-PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 466
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 467 AGVAGLPDDDAGELPAAVVV 486

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 472 AGVAGLPDDDAGELPAAVVV 491

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 271
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 272 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            +                  KY L+                              +R+V 
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 390 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 443
           SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V  
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
            +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG 
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           I  +  + I+DR K LIK  +G  VA   LE +    P I D+ V
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V+G  +F GY++ P+ T+    D G+F TGD+G+I   G V I+ R 
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K+L+ I+ G  V  + +E+     P + +  V G
Sbjct: 399 KDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 574
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 608
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 574
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 608
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 574
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 608
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 436 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D  V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 71/298 (23%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 259 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 286
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 287 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 346
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 347 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 488
Query: 559 VVV 561
           VVV
Sbjct: 489 VVV 491

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 176/478 (36%), Gaps = 84/478 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 316
            +  ++T  DV L  LPL H+    +     + G ASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376
           A                  E  P+   I D                 +A+P A L + R 
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 435
           V              G      +E F      A     +G +ET G +T   + D     
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 436 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
               P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 494 WFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           W HTGD+G+   +G +    R  +K LIK + GE V    +E      P I D  V G
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V  
Sbjct: 343 LHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVP 402
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
           +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI  
Sbjct: 403 FFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVV 560
              +G   I+DR K+LIK  +G  V    LE++    P I D  V G  D     L A V
Sbjct: 461 YDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAV 519
Query: 561 VPCEE 565
           V  EE
Sbjct: 520 VVLEE 524

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 187/510 (36%), Gaps = 100/510 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 378 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 432
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 492
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 493 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
             F        TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D 
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 546 WVYGD-------SLKSMLVAVVVPCEEDTK 568
            V  D       S+ + LV       ED K
Sbjct: 890 VVVADRHESGDASINAYLVNRTQLSAEDVK 919

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 384 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 441
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 172/477 (36%), Gaps = 78/477 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV---------P 81
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA---VQTG 194
             +N  L  AE+  +  + +    +++   + A  +     F S +  +       V+ G
Sbjct: 82  ALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-----FQSGSGARIIFLGDLVRDG 136
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    L
Sbjct: 137 -EPYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----L 183
Query: 255 FLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
           F   Q   +    +V L   PL H+               VG++   + AL  D      
Sbjct: 184 FXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD------ 222
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373
                          G    +EE RP+     DAL   +   +   +            A
Sbjct: 223 ---------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAA 262
Query: 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                +     LR V   GA     V E +        V  YG TE         P    
Sbjct: 263 AHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK--- 319
Query: 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIID 492
             GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + D
Sbjct: 320 -TGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GW+ T D+    P G V+I+ R  + I IS GE +    +E V   AP + ++ V G
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G+ E     T     E  +V T G P+S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 443 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 357
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 478 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GY+  P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 385 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 439
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 558
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P         + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 559 VV 560
           +V
Sbjct: 472 IV 473

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T G P+  
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
             E+    V +   +PL     G +  RG   F GYYK+P     +   +G++ +GD+  
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 421 IDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 412 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 462
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 516 KNLIKISQGEYVALEYLENV 535
            N +KI +G  V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +I   +Y+SG++G PKG V TH   A      +L+       +  +DV  S   L     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                 FF  G   G            LM  +PT             + I   L E RP 
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTA------------DAIFARLVEHRPT 276
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  LY                   A++L    + AR    +R+  S G  L  E+ 
Sbjct: 277 VFYGVPTLY-------------------ANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGY 457
           E         ++ G G TE      +   +    V  GT G PV  Y E+ L +  E G+
Sbjct: 318 ERFTAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGH 371
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           + + D   G++ ++G +    Y+ N + +R + +  W  +GD    LPNG      R  +
Sbjct: 372 A-VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDD 430
Query: 518 LIKISQGEYVA 528
           ++K+S G+YV+
Sbjct: 431 MLKVS-GQYVS 440

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 469
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 470 VRGKTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
             +A   LE +      + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
           E+      P+ +   G +C+ G +L SGY+ +     E    GW  TGD+G +L +G + 
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 511 IIDRKKNLIKI 521
           +  R K+LI I
Sbjct: 455 VTGRIKDLIII 465

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRK 515
           + TGD+ +   +GV++ + R 
Sbjct: 448 YRTGDLARRRADGVLEYVGRA 468

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	660
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-70
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-66
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-65
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	5e-64
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-61
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-60
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-59
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	5e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	9e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-57
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	8e-56
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-54
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-52
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-52
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-45
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-32
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-28
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-28
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-06
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  235 bits (601), Expect = 7e-70
 Identities = 106/507 (20%), Positives = 169/507 (33%), Gaps = 100/507 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                               N             +    +         R  I+GGAP+ 
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297

Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
             + +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +      
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
                          GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + 
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407

Query: 511 IIDRKKNLIKISQGEYVALEYLENVYC 537
           I DR K++I IS G        ENVY 
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYP 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  227 bits (582), Expect = 3e-67
 Identities = 95/502 (18%), Positives = 147/502 (29%), Gaps = 103/502 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
                                       LA   A      +L   LR V   GA +   V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
            E   +       V  YG TE      +  P      GT      +SE+R+  V   G  
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341

Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
                    GE+ V    + F GY   P  T E + DGW+ T D+    P G V+I+ R 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401

Query: 516 KNLIKISQGEYVALEYLENVYC 537
            ++I IS G        EN++ 
Sbjct: 402 DDMI-ISGG--------ENIHP 414

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  223 bits (572), Expect = 7e-66
 Identities = 91/497 (18%), Positives = 161/497 (32%), Gaps = 96/497 (19%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    +          ++      
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
           ++                                      L+ ++ GGA LS  + E  L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
           +      +   +G+TETC       P+       T G  S   ++++             
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
                GE+ ++G  + +GY    D    +  +G+F+TGDI +I   G V I DR+K+LI 
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401

Query: 521 ISQGEYVALEYLENVYC 537
           IS G        EN+Y 
Sbjct: 402 ISGG--------ENIYP 410

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  221 bits (566), Expect = 7e-65
 Identities = 93/502 (18%), Positives = 164/502 (32%), Gaps = 109/502 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
                                   A L             LR V     P +  +E F  
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291

Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
               A     +G +ET G +T     +     +AG    +  + +       +P  E+G 
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
                    E+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399

Query: 516 KNLIKISQGEYVALEYLENVYC 537
           K LI  + G        ENVY 
Sbjct: 400 KELI-KTGG--------ENVYP 412

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  219 bits (560), Expect = 5e-64
 Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           T+     DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  213 bits (545), Expect = 2e-61
 Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
           VP                  P      + L                         +    
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296

Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
                 L++  +G  P++  + E  L++             Q +G+TE C   T   P  
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           +    T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E 
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407

Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
                    +F TGD+G I   G +   DR K +IK  
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  211 bits (539), Expect = 1e-60
 Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP   
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F  L K +L        +       DL            
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DIG         I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  205 bits (525), Expect = 4e-59
 Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 537
           +F TGD+    P+G V+I+ RK  +LI  S G          +  
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  207 bits (528), Expect = 5e-59
 Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP   
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F    K  L        +       DL            
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            + E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DI     +    I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  202 bits (517), Expect = 9e-58
 Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             GT G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  204 bits (521), Expect = 1e-57
 Identities = 89/517 (17%), Positives = 162/517 (31%), Gaps = 128/517 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
            E     T        ++ T G P+    E+ +       +P  E+G           + 
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386

Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
            RG   F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 564
            E +EN+    P +               A+V +  E
Sbjct: 446 AEEIENLLLRHPAVIY------------AALVSMEDE 470

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  197 bits (504), Expect = 8e-56
 Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP        
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                     P    +  ++ K               SP  D       K  L   LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
            SGGAPL  E+ +        A L QGYG+TE      +C            G  G V  
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
            +E+++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 500 IGQILPNGVVKIIDRKKNLIK 520
           IG I  +  + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  193 bits (493), Expect = 3e-54
 Identities = 80/552 (14%), Positives = 164/552 (29%), Gaps = 137/552 (24%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
                                       + W+      +    +  L             
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
            +L+  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366

Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
           S   E+++      EVP  E+          G +  RG   F GYY++P+   +    D 
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK 553
           ++++GD+ Q  P+G ++++ R K+ I    GE +A E +E +  + P +           
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMH--------- 466

Query: 554 SMLVAVV-VPCE 564
               A+V +  E
Sbjct: 467 ---AALVAIVDE 475

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  188 bits (479), Expect = 3e-52
 Identities = 110/553 (19%), Positives = 184/553 (33%), Gaps = 143/553 (25%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
           +                              + WM+          L+ L        ++
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL--------QV 302

Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
                    GGA  S E       V  C  L Q +G+ E          D    +V T G
Sbjct: 303 L------QVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354

Query: 440 -PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D 492
            P+S Y E R+      +V   G +       G +  RG     GYYK  +    S   D
Sbjct: 355 KPMSPYDESRVWDDHDRDVKP-GET-------GHLLTRGPYTIRGYYKAEEHNAASFTED 406

Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL 552
           G++ TGDI ++  +G + +  R K+ I    GE VA E +EN     P + D        
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHD-------- 457

Query: 553 KSMLVAVV-VPCE 564
                A+V +P +
Sbjct: 458 ----AAMVSMPDQ 466

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  192 bits (491), Expect = 5e-52
 Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
                           P    I  A+ K               S   +       K  L 
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344

Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
             +R+V SG APL  E+ +        A L QGYG+TE      +             G 
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403

Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
            G V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           W HTGDIG I  +  + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  169 bits (430), Expect = 1e-45
 Identities = 123/499 (24%), Positives = 181/499 (36%), Gaps = 123/499 (24%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLR--VTCC 408
              W+ +                     RL   LR ++ GG+     +   F R  V   
Sbjct: 278 ---WLAL------------ADYLESTGHRLKT-LRRLVVGGSAAPRSLIARFERMGVE-- 319

Query: 409 AFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             + QGYGLTET       F           +++ +    G       LR+ +  E    
Sbjct: 320 --VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPV 376

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
           P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K+
Sbjct: 377 PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKD 436

Query: 518 LIKISQGEYVA-LEYLENV 535
           LIK S GE+++ ++ LEN 
Sbjct: 437 LIK-SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  120 bits (302), Expect = 1e-28
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
             NPD T  +I   ++  GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  117 bits (294), Expect = 6e-28
 Identities = 85/512 (16%), Positives = 144/512 (28%), Gaps = 139/512 (27%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR 342
                   V                  P +L G P V                P   L+R
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVL-------------TSPVSFLQR 270

Query: 343 --RIFDALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGA 393
             R    +       +   N  +         +L A R     + G     +  ++SG  
Sbjct: 271 PARWMHLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSE 321

Query: 394 PLSTE-VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMC 433
            +    ++ F       F         +   Y L E             P TV F  E  
Sbjct: 322 RVQAATIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESL 377

Query: 434 MVGTAGPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             G A P +      L                +       D   GE+ V G  + +GY++
Sbjct: 378 SAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQ 436

Query: 482 NPDLTRESII------------DGWFHTGDIG 501
            PD +  +                W  TGD G
Sbjct: 437 KPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  116 bits (293), Expect = 2e-27
 Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
               P D    GE+ V+  ++  GY+  P+ TR +             +  TGD+G  L 
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447

Query: 506 NGVVKIIDRKKNLIKI 521
              + +  R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.5 bits (195), Expect = 2e-15
 Identities = 92/586 (15%), Positives = 162/586 (27%), Gaps = 167/586 (28%)

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
                +  + + L+       +P       E     K+L   Y   +  DL RE +    
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKIS---------QGEYVALEYL-ENVYC 537
                I + + +G+           D+   +I+ S         +  +  L     + + 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVP----CEEDTKKWAYS-------------------- 573
              ++  IW        M+V   +      E+  K+   S                    
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 574 ------NGHAGSFLELCSLVQLQNYILS----ELKNAAERNKLRGFEHIKGVILDPRPFD 623
                 N       +      L  Y  S     LKN     ++  F  +    LD R F 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FLDFR-F- 502

Query: 624 MERDL------------VTATLKKKRNKLLIY--YQVEIDQLYEKL 655
           +E+ +            +  TL     +L  Y  Y  + D  YE+L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTL----QQLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 83/559 (14%), Positives = 154/559 (27%), Gaps = 195/559 (34%)

Query: 141 NFILDHAEIDFVFVQD--------KKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            F+ +    D   VQD        +++  ++ S D   +  LR+     S   E  +  V
Sbjct: 28  AFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 192 QTGIKP-YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           +  ++  Y +     L  ++ ++    QP ++ T MY                       
Sbjct: 84  EEVLRINYKF-----L--MSPIKTEQRQP-SMMTRMYIE--------------------- 114

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
                     D++  D+             +V  +Y   R             LR  L+E
Sbjct: 115 --------QRDRLYNDN-------------QVFAKYNVSRLQPY-------LKLRQALLE 146

Query: 311 LKPTLLAGVPRVFEKIH--EGIKK---ALEELR--PLRRRIFDALYKYKLAWMNMGYKQR 363
           L+P        V   I    G  K   AL+      ++ ++   ++     W+N+     
Sbjct: 147 LRPA-----KNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-----WLNLKNCNS 194

Query: 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCC------AFLVQGYG 416
             + L  L      +       R   S    L    ++  LR            LV    
Sbjct: 195 PETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249

Query: 417 LTETCGPTTV-CFPDEMC--MVGT-------AGPVSVYSELRLEEVPEMGYSPLDDPPCG 466
           L           F +  C  ++ T           +  + + L+       +P       
Sbjct: 250 LLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTP------D 301

Query: 467 EVCVRGKTLFSGY--YKNPDLTRESIIDGWFHTGDIGQILPNGVVKI-------IDRKKN 517
           E     K+L   Y   +  DL RE +         I + + +G+           D+   
Sbjct: 302 E----VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV-PCEEDTKKWAYSNGH 576
           +I+ S      L  LE      P            + M   + V P              
Sbjct: 358 IIESS------LNVLE------P---------AEYRKMFDRLSVFP--PSAH-------- 386

Query: 577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKK 636
                     +     +LS +     ++             D     +   L   +L +K
Sbjct: 387 ----------IPTI--LLSLIWFDVIKS-------------DVM--VVVNKLHKYSLVEK 419

Query: 637 RNKLLIYYQVEIDQLYEKL 655
           + K        I  +Y +L
Sbjct: 420 QPKESTIS---IPSIYLEL 435

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 50/383 (13%), Positives = 104/383 (27%), Gaps = 135/383 (35%)

Query: 71  FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 127
           F  + W   K     E VL+++  L             + +N    + +++    L  L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238

Query: 128 CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 183
               Y + L       +L +       VQ+ K     +  C      ++++   F  +T 
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279

Query: 184 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 220
               A    +++       + DE   L  K  +     LP +     P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 221 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 248
            + T       + D                            P    +    ++      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 249 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 290
             S V + +++               +++  +YL            H    +++ Y   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457

Query: 291 GASVGYYHGDLNALRDD----------LMELKPT-LLAGVPRVF-------EKI-HEG-- 329
                +   DL     D          L  ++    +     VF       +KI H+   
Sbjct: 458 ----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 330 ------IKKALEELRPLRRRIFD 346
                 I   L++L+  +  I D
Sbjct: 514 WNASGSILNTLQQLKFYKPYICD 536

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 486 TRESIIDGWFHTG 498
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 494 WFHTGDIG 501
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 63.7 bits (156), Expect = 8e-11
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
           P            +D+          GE+ V G  +  GY  NP+ T E+          
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382

Query: 496 HTGDIGQILPNGV----------VKI 511
           HTGDIG +  + +          +K 
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
             GE+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861

Query: 517 NLIKI 521
           + +KI
Sbjct: 862 DQVKI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
            P        L             GE+ + G  + +GY   PD      I+G   + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 500 IGQILPNGV----------VKI 511
           I ++  +            VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.0 bits (131), Expect = 1e-07
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
           +   + E   +       GE+   G  L  GY  +   TR S ++  +         TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402

Query: 500 IGQILPNGV----------VKI 511
             +    G           VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 51.7 bits (125), Expect = 5e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F   
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

Query: 497 -----TGDIGQILPNGV----------VKI 511
                TGD  + L +G           VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	660
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.28
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.13
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.79
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.63
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.55
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	90.05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	89.52
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	89.32

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.2e-75  Score=643.49  Aligned_cols=504  Identities=19%  Similarity=0.174  Sum_probs=411.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..|+.++|.++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864    2     6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++|++|.++.+++.++++.++++++|+++....    ..........+.++.++..+...             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999876321    11111111223344444433211             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                        .+.++.... ..........++++++++|||||||.||+|+++|+++++.+......+     ++.++|++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              011111111 111122345789999999999999999999999999999988877666     788999999999999


Q ss_pred             hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......                   
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  294 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------  294 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence            9999874  6788999999999876 89999999999999999999999999876432110                   


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                                ...++||.+++||+++++++.+.+++.+|+++++.||+||++..+.........
T Consensus       295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  348 (539)
T 1mdb_A          295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI  348 (539)
T ss_dssp             --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence                                      011489999999999999999999998999999999999965433322221123


Q ss_pred             ccCccCCCccC-eeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115          434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~~~-~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..+++|+|+++ .+++|+| +++.  +++.|+.|||+|+|++++.||+++++.|.+.| .+|||+|||+|++|+||+|++
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  425 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV  425 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence            34789999975 5899998 5554  55667899999999999999999999999999 699999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++....         .        +   
T Consensus       426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~---  484 (539)
T 1mdb_A          426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K---  484 (539)
T ss_dssp             EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C---
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C---
Confidence            9999999996 8999999999999999999999999997655   3788998876421         0        1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~  654 (660)
                           .++|++++++..||.|++|+.|+++      +.+|+|++||++|++|++++.++|+++|++
T Consensus       485 -----~~~l~~~l~~~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          485 -----AAELKAFLRERGLAAYKIPDRVEFV------ESFPQTGVGKVSKKALREAISEKLLAGFKK  539 (539)
T ss_dssp             -----HHHHHHHHHHTTCCGGGSCSEEEEC------SSCCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHhCCCCcccCCCEEEEe------ccCCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence                 1234444443459999999999987      456999999999999999999999999974

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=5.5e-75  Score=640.17  Aligned_cols=522  Identities=25%  Similarity=0.312  Sum_probs=422.5

Q ss_pred             CCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCC
Q 006115           19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA   98 (660)
Q Consensus        19 ~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv   98 (660)
                      |.+..+|++...+..+|    ...++.++|.++++++||++|+++.   ++.    +++||+||.++++++|++|++.|+
T Consensus         3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv   71 (536)
T 3ni2_A            3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI   71 (536)
T ss_dssp             --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence            34455777666554444    2478999999999999999999864   221    689999999999999999999999


Q ss_pred             CCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEE
Q 006115           99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC  178 (660)
Q Consensus        99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~  178 (660)
                      ++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.......  .. .++.
T Consensus        72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~  148 (536)
T 3ni2_A           72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC  148 (536)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence            99999999999999999999999999999999999999999999999999999999988766554332211  12 2344


Q ss_pred             ecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccc
Q 006115          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (660)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~  258 (660)
                      ++...           .....+.++...... ..+.....++++++|+|||||||.||+|++||+++++.+.........
T Consensus       149 ~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~  216 (536)
T 3ni2_A          149 VDSAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP  216 (536)
T ss_dssp             SSCCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC
T ss_pred             ecCCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc
Confidence            43321           123456666554322 223345678999999999999999999999999999887665432110


Q ss_pred             ccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006115          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (660)
Q Consensus       259 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (660)
                       ...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..      
T Consensus       217 -~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------  289 (536)
T 3ni2_A          217 -NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------  289 (536)
T ss_dssp             -SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS------
T ss_pred             -cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc------
Confidence             115788999999999999999865 6778999999999876 9999999999999999999999999886421      


Q ss_pred             hchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeec
Q 006115          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY  415 (660)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~Y  415 (660)
                                                     ..+..+        .++||.+++||+++++++.+.+++.+ ++++++.|
T Consensus       290 -------------------------------~~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y  330 (536)
T 3ni2_A          290 -------------------------------DLDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY  330 (536)
T ss_dssp             -------------------------------CGGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred             -------------------------------ccccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence                                           111111        24899999999999999999999988 89999999


Q ss_pred             CCCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-
Q 006115          416 GLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  490 (660)
Q Consensus       416 G~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-  490 (660)
                      |+||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| 
T Consensus       331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~  408 (536)
T 3ni2_A          331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID  408 (536)
T ss_dssp             ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence            9999998765542    11233458899999999999999 5433 455678999999999999999999999999999 


Q ss_pred             cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhH
Q 006115          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  567 (660)
Q Consensus       491 ~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~  567 (660)
                      .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..++. 
T Consensus       409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~-  486 (536)
T 3ni2_A          409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS-  486 (536)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-
T ss_pred             CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC-
Confidence            7999999999999999999999999999997 8999999999999999999999999986644   3788999887642 


Q ss_pred             HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                             ..        +        .++|+++++ ++||.|++|+.++++      +.+|+|++||++|++|++++.+
T Consensus       487 -------~~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          487 -------QA--------T--------EDEIKQYIS-KQVIFYKRIKRVFFI------EAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             -------CC--------C--------HHHHHHHHH-TTSCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHTC---
T ss_pred             -------CC--------C--------HHHHHHHHH-HhccCCccccEEEEE------ecCCCCCCCCeeHHHHHHHhcc
Confidence                   00        1        123444443 789999999999987      4569999999999999988753

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5e-75  Score=642.41  Aligned_cols=516  Identities=21%  Similarity=0.231  Sum_probs=392.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccC--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006115           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (660)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~--~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~  109 (660)
                      .++|..+....++.++|+++|+++||++|+++.   ++  ..+.++++||+||.++++++|++|.+.|+++||+|+++++
T Consensus         9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            345555556789999999999999999999987   42  2334578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHH
Q 006115          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       110 n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |++++++++|||+++|++++|++|.++.+++.++|+.++++++|++......+......  .....++..+..       
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------  156 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE-------  156 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence            99999999999999999999999999999999999999999999998876655433221  124445554421       


Q ss_pred             HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEE
Q 006115          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (660)
                             ..++.++...............++++++|+|||||||.||+|+++|+++.+.+..+...+     ++.++|++
T Consensus       157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  224 (549)
T 3g7s_A          157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI  224 (549)
T ss_dssp             -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred             -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence                   234555555443222222222348999999999999999999999999999998887777     78999999


Q ss_pred             EEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006115          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       270 l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      ++++|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++........            
T Consensus       225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------  292 (549)
T 3g7s_A          225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------  292 (549)
T ss_dssp             ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred             EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence            999999999998887888999999999876 9999999999999999999999999987653321000            


Q ss_pred             HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----cC---CceeeecCCCCCC
Q 006115          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC  421 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE~~  421 (660)
                                             .        ..+++|.+++||+++++++.+.+.+.    ++   +++++.||+||++
T Consensus       293 -----------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  341 (549)
T 3g7s_A          293 -----------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC  341 (549)
T ss_dssp             -----------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred             -----------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence                                   0        11489999999999999999999887    66   8999999999999


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc---cCC--ccc
Q 006115          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH  496 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f---~~g--~~~  496 (660)
                      .+++...........++|.|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.|   .+|  ||+
T Consensus       342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~  419 (549)
T 3g7s_A          342 PMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LEDG-RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR  419 (549)
T ss_dssp             SEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSSC-CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred             hhhhcCCccccCcCCCccccCCCCEEEEEe-CCCC-cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence            887776655545568999999999999999 4433 456677899999999999999999999999998   678  999


Q ss_pred             cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006115          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (660)
                      |||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++...     
T Consensus       420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----  493 (549)
T 3g7s_A          420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG-----  493 (549)
T ss_dssp             EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT-----
T ss_pred             cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC-----
Confidence            9999999999999999999999997 8999999999999999999999999998765   368899998765200     


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       ..        +        .++|+++++ ++||.|++|+.|++++      .+|+|++||++|++|++++.+
T Consensus       494 -~~--------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~  542 (549)
T 3g7s_A          494 -KV--------D--------EEDIIEWVR-ERISGYKRVREVEFVE------ELPRTASGKLLRRLLREKEAE  542 (549)
T ss_dssp             -SC--------C--------HHHHHHHHH-TTCC-----CCCCEEE------ECC------------------
T ss_pred             -cC--------C--------HHHHHHHHH-HhccCcccceEEEEec------cCCCCCCcCEeHHHHHHHhhc
Confidence             00        1        123444443 7899999999999884      459999999999999998865

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1e-73  Score=633.98  Aligned_cols=510  Identities=17%  Similarity=0.152  Sum_probs=400.4

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      +..++.+.++|+++|+++||++|+++.   +. .+..+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus        52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~  127 (580)
T 3etc_A           52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC  127 (580)
T ss_dssp             CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred             cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            456777889999999999999999986   43 23457999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh--hhhhccccccccCc-cEEEEecCCcHHHHHHHhhCC
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      +|||+++|++++|+++.++.+++.++|+.++++++|++.+..  ..+.... ...+.. ..++.++...          .
T Consensus       128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~  196 (580)
T 3etc_A          128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------L  196 (580)
T ss_dssp             HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------C
T ss_pred             HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------c
Confidence            999999999999999999999999999999999999987654  3222211 122222 3344443221          1


Q ss_pred             ceeeeHHHHHhcCccCCccC---CCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEE
Q 006115          195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (660)
                      ..+.++.+.+..........   ....++++++|+|||||||.||+|.++|.+++..+......+     ++..++++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  271 (580)
T 3etc_A          197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT  271 (580)
T ss_dssp             TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred             cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence            23456666665443221111   246789999999999999999999999999888776655444     7889999999


Q ss_pred             ecChhhHHHHHH-HHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006115          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       272 ~~p~~~~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      ..|+.|..++.. ++.++..|+++++.+.   ++..+++.++++++|+++++|++++.|.+..                 
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----------------  334 (580)
T 3etc_A          272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----------------  334 (580)
T ss_dssp             CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred             eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence            999999888775 6677899999988742   8999999999999999999999999886420                 


Q ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecc
Q 006115          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  427 (660)
                                           ...        ...++||.+++||+++++++.++|.+.+|+++++.||+||++..++..
T Consensus       335 ---------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  385 (580)
T 3etc_A          335 ---------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF  385 (580)
T ss_dssp             ---------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred             ---------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence                                 001        112489999999999999999999998999999999999998776655


Q ss_pred             cCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhhcccCCccccCceEE
Q 006115          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQ  502 (660)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g-----~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~  502 (660)
                      +.. ....+++|+|+++++++|+| +++.  +++.|+.|||+|+|     +.++.||+++++.+.+.|.+|||+|||+|+
T Consensus       386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~  461 (580)
T 3etc_A          386 PWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW  461 (580)
T ss_dssp             TTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred             CCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence            443 33458999999999999999 6654  55667899999997     789999999999999999999999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006115          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      +|+||+++++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++   ..++|+|++.++..            
T Consensus       462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~------------  528 (580)
T 3etc_A          462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT------------  528 (580)
T ss_dssp             ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC------------
T ss_pred             ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC------------
Confidence            9999999999999999997 6999999999999999999999999997765   37889999887531            


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           ..+++    .++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|++++++
T Consensus       529 -----~~~~~----~~~l~~~l~-~~l~~~~~P~~i~~v~------~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          529 -----PSDSL----KNELQDHVK-NVTAPYKYPRIIEFVP------ELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             -----CCHHH----HHHHHHHHH-HHSCGGGCCSEEEEEC------C--------------------
T ss_pred             -----CCHHH----HHHHHHHHH-hhCCCccCCeEEEEeC------CCCCCCCcCCcHHHHHhHhhc
Confidence                 12222    344455554 6799999999999984      469999999999999998865

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.4e-74  Score=634.24  Aligned_cols=503  Identities=24%  Similarity=0.291  Sum_probs=384.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++||++|+++.   +.  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864   21  2347899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++|+.++++++|++......+... ....+....++.++....          .....+
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI-RGELKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH-GGGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHH-HhhCCCccEEEEecCCCC----------cccccH
Confidence            999999999999999999999999999999999998766544332 222344555655543211          012355


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhc--ccccccccCCCCCCcEEEEecChhhH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      .++......    .....++++++|+|||||||.||+|++||++++..+...  ...+     +++++|++++++|++|.
T Consensus       161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (541)
T 1v25_A          161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV  231 (541)
T ss_dssp             HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred             HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence            555433211    134567899999999999999999999999998776542  2223     67899999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +++...+.++..|+++++.+.  ++..+++.++++++|+++++|+++..|++......                      
T Consensus       232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  289 (541)
T 1v25_A          232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------  289 (541)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred             hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence            998777888999999999874  89999999999999999999999999876533211                      


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-----  431 (660)
                                             ...++||.+++||+++++++.+.+ +.+|+++++.||+||++.+++......     
T Consensus       290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  345 (541)
T 1v25_A          290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL  345 (541)
T ss_dssp             -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence                                   011489999999999999999999 567999999999999998776654331     


Q ss_pred             -----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECC
Q 006115          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (660)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~  505 (660)
                           .....++|+|+++++++|+| +++...+.+.++.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~  424 (541)
T 1v25_A          346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE  424 (541)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred             CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence                 12347899999999999999 77665554445789999999999999999999999999 499999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      ||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++....         .      
T Consensus       425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~------  488 (541)
T 1v25_A          425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P------  488 (541)
T ss_dssp             TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------
T ss_pred             CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C------
Confidence            9999999999999996 8999999999999999999999999997765   3788888876211         0      


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                        +.        +++.+++++..||.|++|+.++++      +.+|+|++||++|++|+++|.++
T Consensus       489 --~~--------~~l~~~~~~~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          489 --TP--------EELNEHLLKAGFAKWQLPDAYVFA------EEIPRTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             ----------------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred             --CH--------HHHHHHHHhccCccccCCcEEEEe------CCCCCCCccCeeHHHHHHHHHHh
Confidence              11        223334432389999999999987      44699999999999999987654

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=6.1e-74  Score=628.69  Aligned_cols=498  Identities=23%  Similarity=0.305  Sum_probs=405.6

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +...|+.++|.++|+++||++|+++.   +.    .+++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            45689999999999999999999875   32    258999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+..... .......++.....               .
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDWIGA---------------D  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHH-SSSCCTTCCEEEEH---------------H
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHh-ccCCccEEEEccCc---------------c
Confidence            9999999999999999999999999999999999999876654432211 11111111111100               1


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      .+.+..... ....+.....++++++|+|||||||.||+|++||+++.+.+..+...+     ++..+|++++++|++|.
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  223 (517)
T 3r44_A          150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV  223 (517)
T ss_dssp             HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred             cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence            223333322 122233456789999999999999999999999999999998877776     78999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      +++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+.....                        
T Consensus       224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  279 (517)
T 3r44_A          224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------  279 (517)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred             HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence            999876666569999998876 9999999999999999999999999886532211                        


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccC
Q 006115          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~  436 (660)
                                           ....++||.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus       280 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  337 (517)
T 3r44_A          280 ---------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG  337 (517)
T ss_dssp             ---------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred             ---------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence                                 1122589999999999999999999887 999999999999998766554332 34458


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006115          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|+|++++++++++ +++..  ++.| .|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+++++||.|
T Consensus       338 ~~G~~~~~~~~~i~d-~~~~~--~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d  413 (517)
T 3r44_A          338 SAGRATMFTDVAVRG-DDGVI--REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK  413 (517)
T ss_dssp             CCBEECTTEEEEEEC-TTSCE--ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred             CCCcCCCCeEEEEEC-CCCCC--CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence            899999999999998 55543  3334 7999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006115          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+||+ +|++|+|.+||++|.+||+|.+|+|++.+++.   .++++|......         .        +.       
T Consensus       414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~~-------  468 (517)
T 3r44_A          414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------SE-------  468 (517)
T ss_dssp             GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------CH-------
T ss_pred             CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------CH-------
Confidence            99996 89999999999999999999999999876553   566666433221         0        11       


Q ss_pred             HHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                       ++|+++++ ..||.|++|+.|+++      +.+|+|++||++|++|+++|.+++
T Consensus       469 -~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          469 -QQIVEYCG-TRLARYKLPKKVIFA------EAIPRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             -HHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred             -HHHHHHHH-HhCCCCCCCCEEEEE------CCCCCCCCcCccHHHHHHHHHhhc
Confidence             23334443 679999999999997      456999999999999999987654

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=5e-74  Score=634.56  Aligned_cols=523  Identities=24%  Similarity=0.266  Sum_probs=334.6

Q ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh
Q 006115           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        34 ~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~  113 (660)
                      .|..+....|+.++|.++++++||++|++...  ++.+  .+++||+||.++++++|++|++.|+++||+|+++++|+++
T Consensus        12 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e   87 (550)
T 3rix_A           12 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ   87 (550)
T ss_dssp             CCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT
T ss_pred             CCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc
Confidence            34555566899999999999999999986220  2211  1689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006115          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++++|||+++|++++|++|.++.+++.++++.++++++|++......+.... ...+....++.++....         
T Consensus        88 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------  157 (550)
T 3rix_A           88 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD---------  157 (550)
T ss_dssp             THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------
T ss_pred             HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc---------
Confidence            99999999999999999999999999999999999999999998776554332 23345566666554321         


Q ss_pred             CceeeeHHHHHhcCccC------CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCc
Q 006115          194 GIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (660)
                      .....++.++.......      ..+.....++++++|+|||||||.||+|+++|++++..+......+.  ..++.+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~~~~~  235 (550)
T 3rix_A          158 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDT  235 (550)
T ss_dssp             BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTC
T ss_pred             ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc--cccCCCCc
Confidence            11233455555432211      11122234678999999999999999999999999988776654321  12678899


Q ss_pred             EEEEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006115          268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++++++|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++..                
T Consensus       236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------  299 (550)
T 3rix_A          236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------  299 (550)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC----------------
T ss_pred             EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc----------------
Confidence            99999999999999888888999999999876 9999999999999999999999999886521                


Q ss_pred             HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCcee
Q 006115          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTT  425 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~~~  425 (660)
                                           ..+..++        ++||.+++||+++++++.+.+.+.++.. +++.||+||+++.++
T Consensus       300 ---------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  350 (550)
T 3rix_A          300 ---------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL  350 (550)
T ss_dssp             ---------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEE
T ss_pred             ---------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcccccee
Confidence                                 1111112        4899999999999999999999999875 999999999998877


Q ss_pred             cccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEC
Q 006115          426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL  504 (660)
Q Consensus       426 ~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~  504 (660)
                      ....... ..+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|
T Consensus       351 ~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~  427 (550)
T 3rix_A          351 ITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD  427 (550)
T ss_dssp             ECCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             cCCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence            6655443 448899999999999999 4433 456678999999999999999999999999999 89999999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      +||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|++.++...             
T Consensus       428 ~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~-------------  493 (550)
T 3rix_A          428 EDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM-------------  493 (550)
T ss_dssp             TTCCEEEC------------------------------------------------------------------------
T ss_pred             CCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC-------------
Confidence            99999999999999997 8999999999999999999999999997755   367888887764310             


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 006115          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY  652 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y  652 (660)
                         +        .++|.+++ +..|+.|+.|. .++++      +.+|+|++||++|++|++++.+....-+
T Consensus       494 ---~--------~~~l~~~~-~~~l~~~~~~~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~~~~~~  547 (550)
T 3rix_A          494 ---T--------EKEIVDYV-ASQVTTAKKLRGGVVFV------DEVPKGLTGKLDARKIREILIKAKKGGK  547 (550)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             ---C--------HHHHHHHH-HHhcccccccCCceEEE------eecCCCCCcceeHHHHHHHHHhhccccc
Confidence               1        12233333 36787776554 57776      4569999999999999999987655433

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=6.2e-73  Score=619.37  Aligned_cols=489  Identities=21%  Similarity=0.249  Sum_probs=396.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ++|+.++|.++|+++||++|+.+.   +..    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            478999999999999999999864   211    6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEE--ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |+++|++++|++|.++.+++.++++.++++++|+  +......+....    ...+ ++                     
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~---------------------  127 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II---------------------  127 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence            9999999999999999999999999999999999  665443331111    1111 11                     


Q ss_pred             eHHHHHhcCc----cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC--CCCcEEEEe
Q 006115          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (660)
Q Consensus       199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~  272 (660)
                      .+.++.....    ..........++++++|+|||||||.||+|+++|+++.+.+..+...+     ++  ..++++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence            1222221110    111112345689999999999999999999999999999887766555     56  789999999


Q ss_pred             cChhhHHHHH-HHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006115          273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       273 ~p~~~~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      +|++|.+|+. .++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++......                
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------  266 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------  266 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence            9999999985 46778999999999876 89999999999999999999999999875321000                


Q ss_pred             HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006115          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                         ...        ..++||.+++||+++++++.+.+++.+++.+++.||+||++. +....  
T Consensus       267 -------------------~~~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--  316 (504)
T 1t5h_X          267 -------------------SSL--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--  316 (504)
T ss_dssp             -------------------CCC--------CCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred             -------------------ccc--------cCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence                               000        114899999999999999999999999999999999999933 22222  


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEECCCCcE
Q 006115          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~-g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l  509 (660)
                       ....+++|.|.+++++++++.+.+...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||++
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l  395 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV  395 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred             -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence             1234789999999999999933322356667899999999 99999999999999999999999999999999999999


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006115          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (660)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.        ..        + 
T Consensus       396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~-  457 (504)
T 1t5h_X          396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S-  457 (504)
T ss_dssp             EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C-
T ss_pred             EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C-
Confidence            999999999996 8999999999999999999999999998765   3799999987642        00        1 


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          587 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                             .++|.+++++.+||.|++|+.+++++      .+|+|++||++|++|+++|+
T Consensus       458 -------~~~l~~~~~~~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          458 -------ADALDTFCRSSELADFKRPKRYFILD------QLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             -------HHHHHHHHHTSSCCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHC
T ss_pred             -------HHHHHHHHhhccCcccccceEEEEhh------hCCCCCCCCEeHHHHHHHhc
Confidence                   12344555423899999999999984      46999999999999998874

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=4.4e-73  Score=625.96  Aligned_cols=510  Identities=24%  Similarity=0.278  Sum_probs=411.0

Q ss_pred             CCcHHH-HHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~-~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..++.+ +|.++++++ |++|+++.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   95 (548)
T 2d1s_A           24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI   95 (548)
T ss_dssp             CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence            368999 898999989 99999863   211    589999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++.++|+.++++++|++......+.... ...+....++.++....         ......
T Consensus        96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~  165 (548)
T 2d1s_A           96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQC  165 (548)
T ss_dssp             HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCB
T ss_pred             HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------cccccc
Confidence            99999999999999999999999999999999999988765543321 11222334555443210         001234


Q ss_pred             HHHHHhcCccCCccCCCC------CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEec
Q 006115          200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (660)
                      +.++.........+....      .++++++++|||||||.||+|++||+++.+.+......+.  ..++.++|++++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~  243 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV  243 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence            566554331110111111      2389999999999999999999999999988877655411  11678899999999


Q ss_pred             ChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115          274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       274 p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      |++|.+|+.. ++.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+..                     
T Consensus       244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------  301 (548)
T 2d1s_A          244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE---------------------  301 (548)
T ss_dssp             CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS---------------------
T ss_pred             cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc---------------------
Confidence            9999999876 45556 9999999876 9999999999999999999999999886421                     


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC
Q 006115          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                      ..+..+        .++||.+++||+++++++.+.+++.+ ++++++.||+||++..++.....
T Consensus       302 ----------------~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  357 (548)
T 2d1s_A          302 ----------------LLNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG  357 (548)
T ss_dssp             ----------------CGGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred             ----------------cccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence                            011111        14899999999999999999999988 68899999999999877664433


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcE
Q 006115          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  509 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l  509 (660)
                       ....+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++
T Consensus       358 -~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l  434 (548)
T 2d1s_A          358 -DDKPGASGKVVPLFKAKVID-LDTK-KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF  434 (548)
T ss_dssp             -CCCTTCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred             -cCCCCCCCccCCCceEEEEe-CCcC-ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence             23458899999999999998 4333 455678899999999999999999999999999 7999999999999999999


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006115          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (660)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.        ..        + 
T Consensus       435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~-  496 (548)
T 2d1s_A          435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T-  496 (548)
T ss_dssp             EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C-
T ss_pred             EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C-
Confidence            999999999997 8999999999999999999999999997755   3788999887642        00        1 


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006115          587 VQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~  651 (660)
                             .++|.++++ ..|+.|++|+ .|+++      +.+|+|++||++|++|+++|.+.|++|
T Consensus       497 -------~~~l~~~~~-~~l~~~~~p~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          497 -------EKEVMDYVA-SQVSNAKRLRGGVRFV------DEVPKGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             -------HHHHHHHHH-TTSCGGGSCTTCEEEC------SSCCBCTTSCBCHHHHHHHHHSCC---
T ss_pred             -------HHHHHHHHH-HhccccccccccEEEc------cCCCCCCcchhHHHHHHHHHhhhhhcC
Confidence                   123444443 7899999999 89887      456999999999999999999888765

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.6e-74  Score=631.49  Aligned_cols=500  Identities=15%  Similarity=0.150  Sum_probs=334.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..|+.++|.++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            378999999999999999999864    2     6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...............++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876531    111111222234445555543211            


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      ...+.++...............++++++|+|||||||.||+|+++|+++.+.+......+     ++.++|++++++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            123444444332222233456789999999999999999999999999999998887777     889999999999999


Q ss_pred             hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......                   
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  303 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------------------  303 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence            9999875  6778999999999876 99999999999999999999999999876432111                   


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                        .++        ++||.+++||+++++++.+.+.+.+++++++.||+||++..++........
T Consensus       304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                              111        489999999999999999999999999999999999988655544333334


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ...++|.|+ ++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  434 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV  434 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence            447899996 899999999 5554  45667899999999999999999999999999 799999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..+...                 .   
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~---  493 (544)
T 3o83_A          435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K---  493 (544)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C---
Confidence            9999999996 8999999999999999999999999997755   36788888765220                 1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           ...+++++++..||.|++|+.++++      +.+|+|++||++|++|++++..
T Consensus       494 -----~~~l~~~~~~~~l~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          494 -----AVVLRRHLMELGIAQYKLPDQIKLI------ESLPLTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             ----------------------------------------------------------
T ss_pred             -----HHHHHHHHHhCCCCcccCCcEEEEe------ccCCCCCCCCCcHHHHHHHHhh
Confidence                 1223334433379999999999987      4569999999999999998864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.2e-73  Score=622.12  Aligned_cols=491  Identities=23%  Similarity=0.297  Sum_probs=399.8

Q ss_pred             HHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCC
Q 006115           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (660)
Q Consensus        46 ~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  125 (660)
                      ++|.++++++||++++.+.   +..+   +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            5788999999999999864   2111   589999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHh
Q 006115          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (660)
Q Consensus       126 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (660)
                      ++++|++|.++.+++.++++.++++++|++......+...... ..  ..+..+.....             ..+.....
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAK-VG--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHH-HT--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhh-cC--ceEEEecCCcc-------------cccchhhh
Confidence            9999999999999999999999999999998765443222111 11  12333322111             01111111


Q ss_pred             cCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-H
Q 006115          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (660)
Q Consensus       206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~  284 (660)
                      .. ..........++++++|+|||||||.||+|+++|+++.+.+..+...+     ++.++|++++.+|++|.+|+.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 122233356789999999999999999999999999999998887777     7899999999999999998765 5


Q ss_pred             HHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCC
Q 006115          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (660)
Q Consensus       285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      +.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            677899999998876 9999999998  89999999999998864210                                


Q ss_pred             CcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCcc
Q 006115          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (660)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  443 (660)
                           ...        ...+++|.+++||+++++++.+.+.+.+++++++.||+||++..++... ......+++|+|++
T Consensus       262 -----~~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~  327 (503)
T 4fuq_A          262 -----LTK--------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP  327 (503)
T ss_dssp             -----CST--------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred             -----ccc--------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence                 000        0124899999999999999999999999999999999999987755333 23344588999999


Q ss_pred             CeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcC
Q 006115          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (660)
Q Consensus       444 ~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~  522 (660)
                      +++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||.++++||.||+||+ 
T Consensus       328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  404 (503)
T 4fuq_A          328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-  404 (503)
T ss_dssp             TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred             CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence            99999999 4443 456678999999999999999999999999999 5999999999999999999999999999997 


Q ss_pred             CCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 006115          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (660)
Q Consensus       523 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  599 (660)
                      +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.        ..        +.        +++.+
T Consensus       405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~--------~~--------~~l~~  460 (503)
T 4fuq_A          405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TI--------DE--------AQVLH  460 (503)
T ss_dssp             TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------CH--------HHHHH
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CC--------CH--------HHHHH
Confidence            7999999999999999999999999987654   3688999887643        00        11        23334


Q ss_pred             HHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       600 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      ++ +..||.|++|+.|++++      .+|+|++||++|++|+++|++
T Consensus       461 ~l-~~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          461 GL-DGQLAKFKMPKKVIFVD------DLPRNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             HH-BTTBCGGGCCSEEEEES------CCCBCTTSCBCHHHHHHHTTT
T ss_pred             HH-HhhcccCCCCCEEEEEC------CCCCCcccceeHHHHHHHHHH
Confidence            44 47899999999999984      469999999999999998854

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1e-72  Score=634.66  Aligned_cols=522  Identities=16%  Similarity=0.190  Sum_probs=418.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ..+++.++|+++++++||++|+++.   +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999985   4334455899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhh---------hhccccccc--cCccEEEEecCCcHHHHH
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPDCRSA--QRLRVMVCFTSLTAEQKE  188 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~--~~~~~i~~~~~~~~~~~~  188 (660)
                      ||+++|++++|+++.++.+++.++|++++++++|+++.....         +..... ..  ..+..++.++......  
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vi~~~~~~~~~--  227 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI--  227 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHT-STTCCSCCEEEEECSSCCCC--
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHh-cCCcCCCCEEEEEeCCCCcc--
Confidence            999999999999999999999999999999999998764321         111111 11  1344566554321000  


Q ss_pred             HHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCc
Q 006115          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDD  267 (660)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d  267 (660)
                        .........|.++..... .........++++++|+|||||||.||||+++|++++..+.. +...+     ++.++|
T Consensus       228 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d  299 (652)
T 1pg4_A          228 --DWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGD  299 (652)
T ss_dssp             --CCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTC
T ss_pred             --cccCCCceeHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCC
Confidence              000012346777765432 122333456899999999999999999999999998876643 33344     788999


Q ss_pred             EEEEecChhhHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115          268 VYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       268 ~~l~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ++++..|++|.+|+. .++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+...+         
T Consensus       300 ~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------  370 (652)
T 1pg4_A          300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------  370 (652)
T ss_dssp             EEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG---------
T ss_pred             EEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc---------
Confidence            999999999999985 47788999999999863     789999999999999999999999988642110         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCC
Q 006115          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  418 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~t  418 (660)
                                                .....        .+++||.+++||+++++++.+++.+.+|   +++++.||+|
T Consensus       371 --------------------------~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T  416 (652)
T 1pg4_A          371 --------------------------AIEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT  416 (652)
T ss_dssp             --------------------------GTTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred             --------------------------ccccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence                                      00011        1259999999999999999999999887   8999999999


Q ss_pred             CCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 006115          419 ETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID  492 (660)
Q Consensus       419 E~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f---~~  492 (660)
                      |+++.++....+. ....+++|+|++|++++|+| +++.  +++.|+.|||+|+|  |+++.|||++++.+...|   .+
T Consensus       417 E~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~  493 (652)
T 1pg4_A          417 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK  493 (652)
T ss_dssp             GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSST
T ss_pred             ccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCC
Confidence            9998766554332 34458999999999999999 6654  44556899999999  789999999999888776   38


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006115          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      |||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++   +.++|+|+++++..  
T Consensus       494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~--  570 (652)
T 1pg4_A          494 NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--  570 (652)
T ss_dssp             TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--
T ss_pred             CEEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC--
Confidence            99999999999999999999999999997 7999999999999999999999999997654   37999999886530  


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006115          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~  649 (660)
                                     ..+++    .++|+++++ ..||.|++|+.|+++      +.+|+|++||++|++|++.+.++++
T Consensus       571 ---------------~~~~~----~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~T~sGKi~R~~L~~~~~~~~~  624 (652)
T 1pg4_A          571 ---------------PSPEL----YAEVRNWVR-KEIGPLATPDVLHWT------DSLPKTRSGKIMRRILRKIAAGDTS  624 (652)
T ss_dssp             ---------------CCHHH----HHHHHHHHH-HHTCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHHHHHTC--
T ss_pred             ---------------CCHHH----HHHHHHHHH-HhCCCCcCCeEEEEc------CCCCCCCCccchHHHHHHHHhCCCC
Confidence                           11222    344555554 679999999999997      4469999999999999999987654


Q ss_pred             H
Q 006115          650 Q  650 (660)
Q Consensus       650 ~  650 (660)
                      .
T Consensus       625 ~  625 (652)
T 1pg4_A          625 N  625 (652)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=4e-72  Score=620.46  Aligned_cols=522  Identities=19%  Similarity=0.196  Sum_probs=418.6

Q ss_pred             eeccccCCCCCCCCCCCCcHHHHHHHHHHh-----CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CC
Q 006115           25 YRNLLASNGFPSVDSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GA   98 (660)
Q Consensus        25 ~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~-----~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv   98 (660)
                      +++....++.-..+...+++.++|++++++     +||++|+++.   ++ .+..+++||+||.++++++|++|.+. |+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv   96 (570)
T 3c5e_A           21 FQSMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGL   96 (570)
T ss_dssp             ------CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eeecccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCC
Confidence            344433343333455677889999999998     9999999975   42 22347899999999999999999998 99


Q ss_pred             CCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEE
Q 006115           99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC  178 (660)
Q Consensus        99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~  178 (660)
                      ++||+|+++++|++++++++|||+++|++++|++|.++.+++.++|+.++++++|+++.....+.... ...+.++.++.
T Consensus        97 ~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~  175 (570)
T 3c5e_A           97 QRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLL  175 (570)
T ss_dssp             CTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999987765543322 22344555555


Q ss_pred             ecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH--Hhhhccccc
Q 006115          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFL  256 (660)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~--~~~~~~~~~  256 (660)
                      ++....          .....+.++...... ........++++++|+|||||||.||+|+++|+ ++.  ..... ..+
T Consensus       176 ~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~  242 (570)
T 3c5e_A          176 VSEKSC----------DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT  242 (570)
T ss_dssp             ESSSCC----------TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred             ecccCc----------cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence            553210          113356666544322 122234568999999999999999999999999 444  33333 334


Q ss_pred             ccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEec---CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHH
Q 006115          257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK  332 (660)
Q Consensus       257 ~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~  332 (660)
                           ++..+|++++.+|++|.+++.. ++.++..|+++++.+   .++..+++.++++++|+++++|+++..|.+..  
T Consensus       243 -----~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--  315 (570)
T 3c5e_A          243 -----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--  315 (570)
T ss_dssp             -----SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC--
T ss_pred             -----CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc--
Confidence                 7889999999999999999874 677899999999986   28999999999999999999999999886420  


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCcee
Q 006115          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLV  412 (660)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~  412 (660)
                                                          ...        ...++||.+++||+++++++.+.+.+.+|++++
T Consensus       316 ------------------------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~  351 (570)
T 3c5e_A          316 ------------------------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIR  351 (570)
T ss_dssp             ------------------------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCE
T ss_pred             ------------------------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchh
Confidence                                                000        012489999999999999999999998899999


Q ss_pred             eecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhhh
Q 006115          413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTR  487 (660)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~-----g~~~~~gy~~~~~~~~  487 (660)
                      +.||+||++..++..... ....+++|+|+++++++|+| +++.  +++.|+.|||+|+     |++++.||+++++.+.
T Consensus       352 ~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~  427 (570)
T 3c5e_A          352 ESYGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA  427 (570)
T ss_dssp             EEEEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHH
T ss_pred             hccchhhcccceecCccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhh
Confidence            999999999766554332 23458899999999999999 6654  4566789999999     9999999999999999


Q ss_pred             hcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCh
Q 006115          488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (660)
Q Consensus       488 ~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~  564 (660)
                      +.|.+|||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.+
T Consensus       428 ~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~  506 (570)
T 3c5e_A          428 ANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS  506 (570)
T ss_dssp             HTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECG
T ss_pred             hhhcCCccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECC
Confidence            9999999999999999999999999999999996 8999999999999999999999999997654   37889999876


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +...                ..   .+.+.++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|++.+
T Consensus       507 ~~~~----------------~~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~  560 (570)
T 3c5e_A          507 QFLS----------------HD---PEQLTKELQQHVK-SVTAPYKYPRKIEFVL------NLPKTVTGKIQRAKLRDKE  560 (570)
T ss_dssp             GGTT----------------SC---HHHHHHHHHHHHH-HHSCGGGSCSEEEEES------CCCBCTTCCBCHHHHHHHH
T ss_pred             cccC----------------cc---hHHHHHHHHHHHH-hhCccccCCcEEEEec------cCCCCCCcCCcHHHHHHHH
Confidence            5300                00   1123345555554 6799999999999984      4699999999999999887


Q ss_pred             HH
Q 006115          645 QV  646 (660)
Q Consensus       645 ~~  646 (660)
                      ..
T Consensus       561 ~~  562 (570)
T 3c5e_A          561 WK  562 (570)
T ss_dssp             TC
T ss_pred             Hh
Confidence            43

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.2e-72  Score=634.16  Aligned_cols=533  Identities=18%  Similarity=0.199  Sum_probs=415.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCChhhHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~l~~~n~~~~~~~  117 (660)
                      ...+++.++|+++++++||++|+++.   +...+..+++||+||.++++++|++|+ +.|+++||+|+++++|+++++++
T Consensus        79 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a  155 (663)
T 1ry2_A           79 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT  155 (663)
T ss_dssp             CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred             CCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Confidence            34588999999999999999999985   433445589999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhh--------hhccccccccCccEEEEecCCcHHHHHH
Q 006115          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      +|||+++|++++|+++.++.+++.++|++++++++|+++.....        .........+.++.+++++......   
T Consensus       156 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  232 (663)
T 1ry2_A          156 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---  232 (663)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---
T ss_pred             HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---
Confidence            99999999999999999999999999999999999998765321        1111111223455666655321000   


Q ss_pred             HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCcE
Q 006115          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~  268 (660)
                      .........+|.++..... ...+.....++++++|+|||||||.||||+++|.+++..+.. ....+     ++.++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  306 (663)
T 1ry2_A          233 VAFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDV  306 (663)
T ss_dssp             CCCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCE
T ss_pred             cccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcE
Confidence            0000112346777765432 222334557899999999999999999999999998876643 33334     7889999


Q ss_pred             EEEecChhhHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006115          269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       269 ~l~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      +++..|++|..|.. .++.++..|+++++++.     ++..+++.|+++++|+++++|++++.|.+...           
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----------  375 (663)
T 1ry2_A          307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD-----------  375 (663)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-----------
T ss_pred             EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-----------
Confidence            99999999999985 46788999999999863     78999999999999999999999988753210           


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 006115          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE  419 (660)
                                              ...+..+        +++||.+++||+++++++.+++.+.+|   +++++.||+||
T Consensus       376 ------------------------~~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  423 (663)
T 1ry2_A          376 ------------------------SYIENHS--------LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE  423 (663)
T ss_dssp             ------------------------TSSSSCC--------CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred             ------------------------cccccCC--------cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence                                    0001111        248999999999999999999999887   89999999999


Q ss_pred             CCCceecccC-C-CccccCccCCCccCeeEEeeecC-CCCCCCCCC-CCCceEEEcc--CCcccccCCCchhhhhcc---
Q 006115          420 TCGPTTVCFP-D-EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---  490 (660)
Q Consensus       420 ~~~~~~~~~~-~-~~~~~~~~G~~~~~~~v~iv~~~-~~~~~~~~~-g~~GEi~v~g--~~~~~gy~~~~~~~~~~f---  490 (660)
                      +++.++.... + ....++++|.|++|++++|+| + ++.  +++. |+.|||+|+|  |+++.|||++++.+.+.|   
T Consensus       424 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~  500 (663)
T 1ry2_A          424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP  500 (663)
T ss_dssp             TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred             ccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC
Confidence            9987665543 2 234458999999999999999 5 443  3333 6789999999  589999999999988877   


Q ss_pred             cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhH
Q 006115          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  567 (660)
Q Consensus       491 ~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~  567 (660)
                      .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++   +.++|+|+++++..
T Consensus       501 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~  579 (663)
T 1ry2_A          501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS  579 (663)
T ss_dssp             STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred             CCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc
Confidence            3899999999999999999999999999997 7999999999999999999999999998764   47999999887531


Q ss_pred             HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      ..     ..        .++ ..+.+.++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|++++..+
T Consensus       580 ~~-----~~--------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          580 WS-----TA--------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVD------DLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             ----------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECS------CCCBCTTSCBCHHHHHHSCC--
T ss_pred             cc-----cc--------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcC------CCCCCCccCchHHHHHHHHcCC
Confidence            00     00        000 00023345555554 6799999999999974      4699999999999999998776


Q ss_pred             HHHH
Q 006115          648 IDQL  651 (660)
Q Consensus       648 l~~~  651 (660)
                      ++.+
T Consensus       639 ~~~~  642 (663)
T 1ry2_A          639 SDQL  642 (663)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            5443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=8.2e-73  Score=619.48  Aligned_cols=492  Identities=23%  Similarity=0.278  Sum_probs=325.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...|+.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999874    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+.... ........++.+++...              .
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSG--------------P  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCS--------------S
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCc--------------C
Confidence            99999999999999999999999999999999999988766533332 23345556666554211              1


Q ss_pred             HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (660)
                      +.++...............++++++|+|||||||.||+|+++|+++.+.+......+     ++.++|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            222222111222334456789999999999999999999999999999998887776     889999999999999999


Q ss_pred             HHHHHHHHhh-cCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115          280 DRVIEEYFFR-RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       280 g~~~~~~~l~-~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      |+...+.++. .|+++++...++..+++.++++++|+++++|+++..+++..                            
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----------------------------  266 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA----------------------------  266 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence            9987766544 45555444449999999999999999999999999987532                            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCc
Q 006115          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  437 (660)
                                 ...++        +++|.++.+|++   +..+.+.+.+ ++++++.||+||++++++.......  ..+
T Consensus       267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~  322 (509)
T 3ivr_A          267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS  322 (509)
T ss_dssp             -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred             -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence                       00011        489999999987   7788888888 9999999999999987766554322  245


Q ss_pred             cCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc--
Q 006115          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--  515 (660)
Q Consensus       438 ~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~--  515 (660)
                      +|+|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.  
T Consensus       323 ~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~  399 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE  399 (509)
T ss_dssp             CCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred             ccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence            99999999999999 6654  556678999999999999999999999999999999999999999999999999999  


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006115          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      +|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++.   .++|+|++.++...                +       
T Consensus       400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~-------  455 (509)
T 3ivr_A          400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------A-------  455 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------C-------
Confidence            999996 89999999999999999999999999987553   68888887764310                0       


Q ss_pred             HHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                       .++|++++ +..||.|++|+.|+++      +.+|+|++||++|++|++++++.
T Consensus       456 -~~~l~~~l-~~~L~~~~~P~~i~~v------~~lP~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          456 -ADALAEFV-ASLIARYKKPKHVVFV------EALPKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             -------------------------------------------------------
T ss_pred             -HHHHHHHH-HhhCcccCCCcEEEEe------cCCCCCCCCCccHHHHHHHHhhc
Confidence             12333444 3789999999999987      44699999999999999998753

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.4e-71  Score=609.79  Aligned_cols=487  Identities=18%  Similarity=0.209  Sum_probs=405.8

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCChhhHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +++.++|+++|+++||++|+++.    +     +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999864    3     6899999999999999999975 889999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++.++++.++++++|++..........                            ......+
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecH
Confidence            999999999999999999999999999999999976532211000                            0112345


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .++...............++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++++|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            55554433222333445789999999999999999999999999999998877766     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +...+.++..|+++++.+.    ++..+++.++++++|+++++|+++..++....                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8888889999999999864    78999999999999999999999988754210                         


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                  ...        ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                        000        1124899999999999999999999988 899999999999998776544322    


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEECCCC
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG  507 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f--~~g--~~~TGDl~~~~~~G  507 (660)
                      .....++|.|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+.+.|  .+|  ||+|||+|++ +||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG  389 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG  389 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence            12335799999999999999 6654  55677899999999999999999999999998  344  8999999999 599


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      +++++||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++   ..++|+|++.++..          .      
T Consensus       390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------  452 (511)
T 3e7w_A          390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------  452 (511)
T ss_dssp             EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------
T ss_pred             eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------
Confidence            99999999999997 8999999999999999999999999987644   37889998876430          0      


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      ..    ..+.+.|+++++ +.||.|++|+.++++      +.+|+|++||++|++|++++.++
T Consensus       453 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~v------~~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          453 KE----FQLTSAIKKELA-ASLPAYMIPRKFIYQ------DHIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             SH----HHHHHHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             ch----hhHHHHHHHHHH-hhCchhhCCeeEEEe------ccCCCCCCcCccHHHHHhHHhhh
Confidence            11    123344555554 679999999999987      45699999999999999998753

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=6.9e-72  Score=612.57  Aligned_cols=488  Identities=18%  Similarity=0.196  Sum_probs=399.9

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      +|+.+.|+++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999875   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|++|.++.+++.++++.++++++|++.......        ... .++..+                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence            99999999999999999999999999999999986432110        000 111100                  111


Q ss_pred             HHHh-cCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       202 ~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      .+.. .......+.....++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++++|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            1111 111122233456789999999999999999999999999999998877776     7899999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +..++.+++.|+++++.+.    ++..+++.++++++|+++++|+++..++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            8888889999999999874    89999999999999999999999988753210                         


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                  ...        ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                        000        1124899999999999999999999988 899999999999998776554332    


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc----CCccccCceEEECCCC
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG  507 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~----~g~~~TGDl~~~~~~G  507 (660)
                      .....++|.|+++++++++| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|.    +|||+|||+|++ +||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG  390 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG  390 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred             ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence            12346799999999999999 6554  455678999999999999999999999999983    569999999999 799


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      ++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++..          .      
T Consensus       391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------  453 (512)
T 3fce_A          391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------  453 (512)
T ss_dssp             EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------
T ss_pred             EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------
Confidence            99999999999997 8999999999999999999999999986644   36888988876420          0      


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      ..    ..+.+.|+++++ ..||.|++|+.++++      +.+|+|++||++|++|++.++++
T Consensus       454 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~~------~~lP~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          454 KE----FKLTSAIKKELN-ERLPNYMIPRKFMYQ------SSIPMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             SH----HHHHHHHHHHHH-TTSCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHC-
T ss_pred             ch----hhhHHHHHHHHH-hhCchhcCCeEEEEe------cccCCCCCcChHHHHHHhhhhhc
Confidence            11    123345566664 889999999999987      45699999999999999998753

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.7e-71  Score=608.44  Aligned_cols=503  Identities=21%  Similarity=0.218  Sum_probs=397.0

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~  116 (660)
                      +|..++++.++|.++++ +||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus        19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~   88 (529)
T 2v7b_A           19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV   88 (529)
T ss_dssp             ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred             CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence            44567789999999999 9999999864    2     589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCc-cEEEEecCCcHHHHHHHhhCCc
Q 006115          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      ++|||+++|++++|+++.++.+++.++|+.++++++|++......+..... ..... ..++..+....        ...
T Consensus        89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~  159 (529)
T 2v7b_A           89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPR  159 (529)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred             HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------ccc
Confidence            999999999999999999999999999999999999999876654432211 11122 33444333211        000


Q ss_pred             eeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhH-HHHhhhcccccccccCCCCCCcEEEEecC
Q 006115          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (660)
                      ....+.++..... .........++++++++|||||||.||+|++||+++ .+........+     ++.++|++++++|
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p  233 (529)
T 2v7b_A          160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK  233 (529)
T ss_dssp             CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred             cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence            1124556554321 122233457899999999999999999999999999 66665554444     7889999999999


Q ss_pred             hhhHHHHHH-HHHHhhcCcEEEEec-C-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115          275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       275 ~~~~~g~~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      ++|.+|+.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..++....                    
T Consensus       234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  293 (529)
T 2v7b_A          234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN--------------------  293 (529)
T ss_dssp             TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT--------------------
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc--------------------
Confidence            999999875 567899999999873 3 89999999999999999999999988754200                    


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006115          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                                   .....            ..++|.+++||+++++++.+.+++.+|+++++.||+||++.+++......
T Consensus       294 -------------~~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~  348 (529)
T 2v7b_A          294 -------------LPARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA  348 (529)
T ss_dssp             -------------CCCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred             -------------ccccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence                         00000            03899999999999999999999989999999999999977665554433


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~  511 (660)
                       ...+++|.|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+...|.+|||+|||+|+++++|++++
T Consensus       349 -~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~  424 (529)
T 2v7b_A          349 -VEYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY  424 (529)
T ss_dssp             -CCTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred             -CccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence             3447899999999999999 6654  45567899999999999999999999999999999999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      .||.||+||+ +|++|+|.+||++|.+||+|.+|+|++....  ..++|+|++..+..                 .....
T Consensus       425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~  486 (529)
T 2v7b_A          425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEIL  486 (529)
T ss_dssp             EEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred             eCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchhH
Confidence            9999999997 8999999999999999999999999997322  36889998876420                 01112


Q ss_pred             HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                          .++|+++++ ..||.|++|+.+++++      .+|+|++||++|++|++
T Consensus       487 ----~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          487 ----AEELKAFVK-DRLAPHKYPRDIVFVD------DLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             ----HHHHHHHHH-TTSCTTTSCSEEEEES------CCCBCTTSCBCHHHHHC
T ss_pred             ----HHHHHHHHH-hhcchhhCCeEEEEec------cCCCCCccchhHHhHhh
Confidence                234555554 7999999999999984      45999999999999986

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=5.7e-72  Score=620.48  Aligned_cols=478  Identities=20%  Similarity=0.194  Sum_probs=316.6

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      ....++.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            45679999999999999999999874    2     58999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+.        ....++..+...               
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~---------------  199 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA---------------  199 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc---------------
Confidence            999999999999999999999999999999999999986544321        111121111100               


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                             .............++++++|+|||||||.||+|++||+++.+.+.. ...+     ++.++|++++++|++|.
T Consensus       200 -------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~  266 (570)
T 4gr5_A          200 -------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSWD  266 (570)
T ss_dssp             -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTSS
T ss_pred             -------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccHH
Confidence                   0001112233457899999999999999999999999999877655 2333     68899999999999987


Q ss_pred             HHHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .+...++.+++.|+++++.+.   ++..+++.++++++|+++++|+++..|++....                       
T Consensus       267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------  323 (570)
T 4gr5_A          267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----------------------  323 (570)
T ss_dssp             THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence            776677888999999999863   899999999999999999999999988653110                       


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---
Q 006115          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---  431 (660)
                                       .        .++||.+++||+++++.+.+.+.+.+ ++++++.||+||++++++......   
T Consensus       324 -----------------~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~  378 (570)
T 4gr5_A          324 -----------------A--------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL  378 (570)
T ss_dssp             -----------------G--------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred             -----------------h--------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence                             0        14899999999999999988888777 899999999999988776544322   


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC--------CccccCceEE
Q 006115          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ  502 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~--------g~~~TGDl~~  502 (660)
                      .....++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+.+.| .+        |||+|||+|+
T Consensus       379 ~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~  455 (570)
T 4gr5_A          379 SGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR  455 (570)
T ss_dssp             TSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred             CCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence            22335699999999999999 6554  55667899999999999999999999999998 33        6999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006115          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      +|+||+|+++||+||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++   +.++|+|+.......           
T Consensus       456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~-----------  523 (570)
T 4gr5_A          456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP-----------  523 (570)
T ss_dssp             ECTTSCEEEEEC--------------------------------------------------------------------
T ss_pred             ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-----------
Confidence            9999999999999999997 8999999999999999999999999997654   378888887653200           


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                                  ...++|+++++ +.||.|++|+.++++      +.+|+|++||++|++|++.
T Consensus       524 ------------~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          524 ------------PDAAELRRHVA-EALPAYMVPVECVPV------DELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ------------cCHHHHHHHHH-hhCccccCCcEEEEc------ccCCCCCCcCcchHhhhcc
Confidence                        01123444443 789999999999987      4569999999999999864

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=2.4e-71  Score=618.42  Aligned_cols=473  Identities=19%  Similarity=0.146  Sum_probs=385.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..|+.++|+++|+++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        26 ~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la   96 (620)
T 4dg8_A           26 HPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA   96 (620)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++++.+++++++++........        ....+                      ..
T Consensus        97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~----------------------~~  146 (620)
T 4dg8_A           97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV----------------------PV  146 (620)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE----------------------EG
T ss_pred             HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee----------------------ee
Confidence            9999999999999999999999999999999997665432110        00000                      00


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      ....  ............++++++|+|||||||.||||+++|+++.+.+.. ...+     ++.+++++++..|++|..+
T Consensus       147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~  218 (620)
T 4dg8_A          147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA  218 (620)
T ss_dssp             GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred             ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence            0000  001111223346899999999999999999999999999887765 3334     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      +..++.++..|+++++.+.   ++..+++.++++++|+++++|+++..+.+...                          
T Consensus       219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------------------  272 (620)
T 4dg8_A          219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP--------------------------  272 (620)
T ss_dssp             HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred             HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence            9888999999999999753   89999999999999999999999998864200                          


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---cc
Q 006115          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MC  433 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---~~  433 (660)
                                    .+        .++||.+++|||+++++..+.+.+.+ +++++|.||+||++.+++......   ..
T Consensus       273 --------------~~--------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  330 (620)
T 4dg8_A          273 --------------DC--------LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE  330 (620)
T ss_dssp             --------------GG--------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred             --------------hh--------CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence                          00        14899999999999998887776655 899999999999998776543322   23


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEECC
Q 006115          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP  505 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~--------g~~~TGDl~~~~~  505 (660)
                      ...++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+        +||+|||+|++++
T Consensus       331 ~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~  408 (620)
T 4dg8_A          331 DDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE  408 (620)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT
T ss_pred             CCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC
Confidence            346899999999999999 5554 33556789999999999999999999999999943        7999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC--eEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      ||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++..  .++++++...+.             +.  
T Consensus       409 dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~~--  472 (620)
T 4dg8_A          409 QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------SP--  472 (620)
T ss_dssp             TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------CC--
T ss_pred             CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------HH--
Confidence            9999999999999998 79999999999999999999999999876553  455555543221             00  


Q ss_pred             hccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                             +    .+     +..||.|++|+.++++      +.+|+|++||++|++|++++.+.+
T Consensus       473 -------~----~l-----~~~Lp~y~~P~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~  515 (620)
T 4dg8_A          473 -------Q----AL-----LRQLPTWQRPHACVRV------EALPLTAHGKLDRAALLRRLEEPL  515 (620)
T ss_dssp             -------H----HH-----HHHSCGGGSCSEEEEC------SSCCCC----CCHHHHHHHTCSCC
T ss_pred             -------H----HH-----HHhChhhcCCcEEEEE------CcCCCCcccCHhHHHHhhcccccc
Confidence                   1    11     2469999999999987      556999999999999998875433

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=7.8e-71  Score=616.78  Aligned_cols=501  Identities=18%  Similarity=0.184  Sum_probs=412.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++|+  ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        26 ~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA   94 (617)
T 3rg2_A           26 DLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA   94 (617)
T ss_dssp             CCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            4789999999988  999999864   2      6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++|++|.++.+++.++++.+++++++++.....    ...............+...+....            
T Consensus        95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (617)
T 3rg2_A           95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------  162 (617)
T ss_dssp             HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred             HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence            9999999999999999999999999999999999876541    111111112234444444443221            


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                       ..+.+..... .......+..++++++++|||||||.||+|+++|+++++.+......+     ++.+++++++++|++
T Consensus       163 -~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~  235 (617)
T 3rg2_A          163 -HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA  235 (617)
T ss_dssp             -TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             -cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence             1233333322 122233455789999999999999999999999999999998887777     789999999999999


Q ss_pred             hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  ++.++..|+++++.+. ++..++..++++++|++.++|+++..+++........                 
T Consensus       236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------------  298 (617)
T 3rg2_A          236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR-----------------  298 (617)
T ss_dssp             SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT-----------------
T ss_pred             hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc-----------------
Confidence            9999875  6788999999999876 8999999999999999999999999887643221000                 


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                                ...++||.+++||+++++++.+.+.+.+++++++.||+||++..++........
T Consensus       299 --------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  352 (617)
T 3rg2_A          299 --------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK  352 (617)
T ss_dssp             --------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred             --------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence                                      011489999999999999999999998999999999999998665544333333


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ...++|.|+ ++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.| .++||+|||+|++++||.|++
T Consensus       353 ~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~  429 (617)
T 3rg2_A          353 IIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV  429 (617)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEE
Confidence            346789887 788999999 6554  55667899999999999999999999999999 799999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   ..++|+++..+..                  +.. 
T Consensus       430 ~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~~-  489 (617)
T 3rg2_A          430 QGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RAV-  489 (617)
T ss_dssp             EEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHH-
T ss_pred             EeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CHH-
Confidence            9999999997 7999999999999999999999999986644   3788888877532                  112 


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~  650 (660)
                             .+++++++..||.|++|+.++++      +.+|+|++||++|++|++.+......
T Consensus       490 -------~l~~~l~~~~lp~~~vP~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          490 -------QVRRFLREQGIAEFKLPDRVECV------DSLPLTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             -------HHHHHHHTTTCCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhCCCccccCCcEEEEe------cccCCCCCCCCcHHHHHHHHhccccc
Confidence                   23344433479999999999997      55699999999999999998765443

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=5.6e-71  Score=606.95  Aligned_cols=492  Identities=16%  Similarity=0.138  Sum_probs=394.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      +.++.+.|+++|+++||++|+.+.    +     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999874    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++++.++++++|++++....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876432211        11 1                     1122


Q ss_pred             HHHHhcC--ccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                      .++....  ...........++++++|+|||||||.||+|++||+++++.+.......   ..++..++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            2221111  0111223345789999999999999999999999999998877654431   1267889999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .++...+.++..|+++++.+.    ++..+++.+.++++|++.++|+++..+.....                       
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------  257 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD-----------------------  257 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence            888778888999999998864    88999999999999999999999987653210                       


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--  431 (660)
                                    ...        ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......  
T Consensus       258 --------------~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          258 --------------FCQ--------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             --------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             --------------ccc--------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                          000        0114899999999999999999998888 899999999999998776544322  


Q ss_pred             --ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc----cCCccccCceEEECC
Q 006115          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP  505 (660)
Q Consensus       432 --~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f----~~g~~~TGDl~~~~~  505 (660)
                        .....++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|    .+|||+|||+|++|+
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~  392 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE  392 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence              12336799999999999999 6554  45567899999999999999999999999988    357999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      +|++++.||.||+|++ +|++|+|.+||++|.+||.|.+|+|++..+.    +.++|+|+++++....            
T Consensus       393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~------------  459 (521)
T 3l8c_A          393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER------------  459 (521)
T ss_dssp             SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG------------
T ss_pred             CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc------------
Confidence            9999999999999997 7999999999999999999999999986533    3688999988753100            


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                         .+.  ...+.+.|+++++ .+||.|++|+.|+++      +.+|+|++||++|++|+++++++
T Consensus       460 ---~~~--~~~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          460 ---FDR--ELELTKAIKASVK-DHMMSYMMPSKFLYR------DSLPLTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             ---CSS--HHHHHHHHHHHSG-GGSCGGGSCSEEEEC------SSCCBCTTSSBCHHHHHHHTC--
T ss_pred             ---ccc--chhhHHHHHHHHH-hhCccccCCeEEEEe------cccCCCCCcCccHHHHhhhhhcC
Confidence               000  1123455666664 789999999999987      45699999999999999998654

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2e-70  Score=605.89  Aligned_cols=474  Identities=20%  Similarity=0.229  Sum_probs=389.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++||++|+++.    +     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999864    2     6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++++.++++++|++......+....     ....+..++...                 
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------------  166 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT-----------------  166 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence            9999999999999999999999999999999999987654432211     111222222110                 


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                        + ... .......+..++++++|+|||||||.||||++||+++.+.+......+     ++.++|+++++.|++|..+
T Consensus       167 --~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  237 (563)
T 1amu_A          167 --I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS  237 (563)
T ss_dssp             --T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred             --h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence              0 000 111112345678999999999999999999999999998887776666     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +..++.+++.|+++++.+.    ++..+++.++++++|+++++|+++..+...                           
T Consensus       238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------  290 (563)
T 1amu_A          238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---------------------------  290 (563)
T ss_dssp             HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred             HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence            8878889999999998864    889999999999999999999998765310                           


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--ccc
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM  434 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--~~~  434 (660)
                                              ..+++|.+++||+++++++.+.+.+  .+++++.||+||++..++......  ...
T Consensus       291 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  344 (563)
T 1amu_A          291 ------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH  344 (563)
T ss_dssp             ------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred             ------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence                                    0148999999999999999999876  478999999999998766544322  223


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECCCC
Q 006115          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (660)
Q Consensus       435 ~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-------~g~~~TGDl~~~~~~G  507 (660)
                      ..++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.|.+.|.       ++||+|||+|++|+||
T Consensus       345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG  421 (563)
T 1amu_A          345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  421 (563)
T ss_dssp             SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence            46899999999999999 6554  455678999999999999999999999999984       2599999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      +|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   ..++|+|++....                  
T Consensus       422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------  482 (563)
T 1amu_A          422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------  482 (563)
T ss_dssp             CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------
T ss_pred             eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------
Confidence            99999999999997 8999999999999999999999999987654   3688888876421                  


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +.        ++|+++++ ..||.|++|+.|+++      +.+|+|++||++|++|++.+
T Consensus       483 ~~--------~~l~~~l~-~~L~~y~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          483 PL--------EQLRQFSS-EELPTYMIPSYFIQL------DKMPLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             CH--------HHHHHHHH-HHSCGGGSCSEEEEC------SSCCBCTTSSBCGGGSCCCC
T ss_pred             CH--------HHHHHHHH-hhCchhhCCcEEEEe------cccCCCCCcChhHHhcCCcc
Confidence            11        22334443 679999999999997      45699999999999998754

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=5.8e-71  Score=649.54  Aligned_cols=541  Identities=24%  Similarity=0.313  Sum_probs=345.7

Q ss_pred             CCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH
Q 006115           15 KDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR   94 (660)
Q Consensus        15 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~   94 (660)
                      ....+....+|++...+..+|    ...|+.++|.++++++||++|+++.   +..    +++||+||.++++++|++|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~  106 (979)
T 3tsy_A           38 QSNNNNSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFH  106 (979)
T ss_dssp             -------CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH
Confidence            344455566777765543333    4579999999999999999999864   221    68999999999999999999


Q ss_pred             HcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCcc
Q 006115           95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR  174 (660)
Q Consensus        95 ~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  174 (660)
                      +.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+......  .. .
T Consensus       107 ~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~  183 (979)
T 3tsy_A          107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-V  183 (979)
T ss_dssp             HTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-C
T ss_pred             HcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-c
Confidence            99999999999999999999999999999999999999999999999999999999999998766544332211  11 1


Q ss_pred             EEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCcc--CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhc
Q 006115          175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV  252 (660)
Q Consensus       175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~  252 (660)
                      .++.++....      .........+.++......  ...+.....++++++|+|||||||.||+|+++|+++++.+...
T Consensus       184 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  257 (979)
T 3tsy_A          184 VIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ  257 (979)
T ss_dssp             EEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHH
T ss_pred             eEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHH
Confidence            3344433210      0011223455555443322  1223345678999999999999999999999999999887665


Q ss_pred             ccccccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHH
Q 006115          253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (660)
Q Consensus       253 ~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~  330 (660)
                      ..... ....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++..
T Consensus       258 ~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  336 (979)
T 3tsy_A          258 VDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS  336 (979)
T ss_dssp             HCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG
T ss_pred             HHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc
Confidence            43211 0125788999999999999999865 5777999999999876 9999999999999999999999999886531


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CC
Q 006115          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CA  409 (660)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~  409 (660)
                      .                                     ....+        .++||.+++||+++++++.+++.+.+ ++
T Consensus       337 ~-------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~  371 (979)
T 3tsy_A          337 E-------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVNAKFPNA  371 (979)
T ss_dssp             G-------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHHHHCTTC
T ss_pred             c-------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHHHHCCCC
Confidence            1                                     11111        24899999999999999999999988 89


Q ss_pred             ceeeecCCCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchh
Q 006115          410 FLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL  485 (660)
Q Consensus       410 ~v~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~  485 (660)
                      ++++.||+||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.
T Consensus       372 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~  449 (979)
T 3tsy_A          372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAA  449 (979)
T ss_dssp             EEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred             eEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhh
Confidence            9999999999998765542    11223457899999999999999 5433 4566778999999999999999999999


Q ss_pred             hhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 006115          486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  561 (660)
Q Consensus       486 ~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~  561 (660)
                      +.+.| .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+
T Consensus       450 t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv  528 (979)
T 3tsy_A          450 TAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV  528 (979)
T ss_dssp             HHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------
T ss_pred             hhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEE
Confidence            99999 7999999999999999999999999999997 7999999999999999999999999997654   37888888


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      ..++...                +        .++|++++ +..||.|++|+.++++      +.+|+|++||++|++|+
T Consensus       529 ~~~~~~~----------------~--------~~~l~~~l-~~~l~~~~~p~~i~~v------~~lP~t~~GKi~r~~L~  577 (979)
T 3tsy_A          529 KSKDSEL----------------S--------EDDVKQFV-SKQVVFYKRINKVFFT------ESIPKAPSGKILRKDLR  577 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECCCCCC----------------C--------HHHHHHHH-HHhcccccCCeEEEEe------CCcCcCCCCCeeHHHHH
Confidence            7654210                0        12333444 3789999999998887      45699999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 006115          642 IYYQVEIDQLYEKL  655 (660)
Q Consensus       642 ~~~~~~l~~~y~~~  655 (660)
                      +++.+.+...|...
T Consensus       578 ~~~~~~~~~~~~~~  591 (979)
T 3tsy_A          578 AKLANGLGSGMASV  591 (979)
T ss_dssp             -----------CCH
T ss_pred             HHHHhhcCCccccc
Confidence            99999888887643

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6e-71  Score=603.75  Aligned_cols=492  Identities=22%  Similarity=0.214  Sum_probs=373.2

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      +||.++|.++|+++||++|+++.   +      +++||+||.++++++|++|++.   +||+|+++++|++++++++|||
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~   68 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC   68 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence            36778999999999999999864   3      5899999999999999999986   8999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcee-eeH
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSW  200 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~  200 (660)
                      +++|++++|+++.++.+++.++|+.++++++|++............  ......+.........   ......... ...
T Consensus        69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  143 (501)
T 3ipl_A           69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSN  143 (501)
T ss_dssp             HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred             HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccch
Confidence            9999999999999999999999999999999999876543322111  1111111110000000   000000000 000


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                      ..................++++++|+|||||||.||+|.+||+++.+.+......+     ++.++|++++++|++|.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  218 (501)
T 3ipl_A          144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG  218 (501)
T ss_dssp             ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred             hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence            11111111111123345789999999999999999999999999999998877776     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Q 006115          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      +..++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++....                           
T Consensus       219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------  271 (501)
T 3ipl_A          219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------  271 (501)
T ss_dssp             HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred             HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence            9888889999999999886 999999999999999999999999988653100                           


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccCcc
Q 006115          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTA  438 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~  438 (660)
                            .               ..+||.+++||+++++++.+.+.+ +++++++.||+||+++.++...... .....++
T Consensus       272 ------~---------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  329 (501)
T 3ipl_A          272 ------E---------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV  329 (501)
T ss_dssp             ------S---------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred             ------C---------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence                  0               027999999999999999999887 5999999999999987655443322 2345789


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCe
Q 006115          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (660)
Q Consensus       439 G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~  518 (660)
                      |.|+++++++++| ++       .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|++|+++++||.||+
T Consensus       330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~  400 (501)
T 3ipl_A          330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL  400 (501)
T ss_dssp             BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred             CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence            9999999999999 43       345799999999999999999999887 88999999999999999999999999999


Q ss_pred             eEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 006115          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (660)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (660)
                      ||+ +|++|+|.+||++|.+||+|.+|+|++.+++.   .++++++...+.                  +.        +
T Consensus       401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~  453 (501)
T 3ipl_A          401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------A  453 (501)
T ss_dssp             EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------H
T ss_pred             EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------H
Confidence            996 89999999999999999999999999976553   677888765432                  11        2


Q ss_pred             HHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       596 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      +|+++++ .+||.|++|+.|+++      +.+|+|++||++|++|++.+.++
T Consensus       454 ~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          454 QLIAYLS-KHLAKYKVPKHFEKV------DTLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HHHHHHH-HHSCGGGSCSEEEEC------SSCC-------------------
T ss_pred             HHHHHHH-hhCccccCCCEEEEe------cccCCCCCCCEeHHHHhhccccc
Confidence            2333443 579999999999997      45699999999999999988654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.4e-70  Score=599.88  Aligned_cols=478  Identities=25%  Similarity=0.291  Sum_probs=372.3

Q ss_pred             CCCCCcHHHHHHHHHHhCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115           38 DSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~  116 (660)
                      ...+.++.+.|.++++++|+ ++|+++.    +     +++||+||.++++++|.+|.     .|++|+++++|++++++
T Consensus        18 ~~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~   83 (505)
T 3nyq_A           18 GSHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGV   83 (505)
T ss_dssp             ------CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHH
T ss_pred             CcccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHH
Confidence            34578899999999998887 9999874    3     68999999999999998875     38899999999999999


Q ss_pred             HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++|||+++|++++|++|.++.+++.++|+.++++++|++.....      ......+..+ ..+..              
T Consensus        84 ~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~--------------  142 (505)
T 3nyq_A           84 AVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR--------------  142 (505)
T ss_dssp             HHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT--------------
T ss_pred             HHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc--------------
Confidence            99999999999999999999999999999999999999875211      0111111111 11100              


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                                 .....+.....++++++|+|||||||.||+|+++|+++.+.+..+...+     ++.++|++++.+|++
T Consensus       143 -----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  206 (505)
T 3nyq_A          143 -----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLF  206 (505)
T ss_dssp             -----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTT
T ss_pred             -----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHH
Confidence                       0111223345788999999999999999999999999999998887777     788999999999999


Q ss_pred             hHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+.....                   
T Consensus       207 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  266 (505)
T 3nyq_A          207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------  266 (505)
T ss_dssp             SHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-------------------
T ss_pred             HHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-------------------
Confidence            9999875 6788999999998876 899999999 88999999999999998764321110                   


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                     ....+        +++|.+++||+++++++.+++.+.+++++++.||+||++..++...... ..
T Consensus       267 ---------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~  322 (505)
T 3nyq_A          267 ---------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR  322 (505)
T ss_dssp             ---------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CC
T ss_pred             ---------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CC
Confidence                           00112        2899999999999999999999989999999999999987766554433 34


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEE
Q 006115          435 VGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       435 ~~~~G~~~~~~~v~iv~~~~~~~~~~-~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      .+++|+|+++++++|+| +++...+. +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||+++++
T Consensus       323 ~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~  401 (505)
T 3nyq_A          323 AGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV  401 (505)
T ss_dssp             TTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence            47899999999999999 66665543 447899999999999999999999999999 6999999999999999999999


Q ss_pred             ecc-CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115          513 DRK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       513 GR~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      ||. ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.+...       ..        .   
T Consensus       402 GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~--------~---  462 (505)
T 3nyq_A          402 GRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP--------A---  462 (505)
T ss_dssp             EESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC--------C---
T ss_pred             CCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC--------C---
Confidence            998 599996 8999999999999999999999999987654   37999999875320       00        1   


Q ss_pred             HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                           .++|+++++ +.||.|++|+.|+++      +.+|+|++||++|++|++
T Consensus       463 -----~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          463 -----LGTLADHVA-ARLAPHKRPRVVRYL------DAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             -----HHHHHHHHH-HHTCGGGSCSEEEEC------SCCCC-------------
T ss_pred             -----HHHHHHHHH-hhCCCCcCccEEEEE------CCCCCCCCcCeeHHhhcc
Confidence                 123334443 679999999999987      456999999999999986

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=4.8e-69  Score=596.91  Aligned_cols=518  Identities=17%  Similarity=0.145  Sum_probs=318.9

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccC----CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~  114 (660)
                      ....|+.++|+++|+++||++|+++.   ++    .....+++||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            44578999999999999999999875   32    12234789999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCC
Q 006115          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       115 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      ++++|||+++|++++|++|.++.+++.++|+.++++++|+++.......      ......++.....            
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~------------  154 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ------------  154 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH------------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch------------
Confidence            9999999999999999999999999999999999999999876554321      1111122221111            


Q ss_pred             ceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccc---cccCCCCCCcEEEE
Q 006115          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS  271 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~  271 (660)
                          .+.+...... .........++++++|+|||||||.||+|++||+++.+.+..+...+.   .....+...+++++
T Consensus       155 ----~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (562)
T 3ite_A          155 ----SFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC  229 (562)
T ss_dssp             ----HHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred             ----hhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence                1222222211 111223456788999999999999999999999999988776544321   11124778899999


Q ss_pred             ecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006115          272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (660)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (660)
                      ..|+.|..++..++.++..|+++++.+.  .+..+.+.++++++|+++++|+++..+...                    
T Consensus       230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--------------------  289 (562)
T 3ite_A          230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--------------------  289 (562)
T ss_dssp             CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred             ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence            9999998888878888999999988764  467889999999999999999987664210                    


Q ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccC
Q 006115          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  429 (660)
                                       +    .        ..++||.+++||+++++++.+.+++.+++++++.||+||++..++....
T Consensus       290 -----------------~----~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  340 (562)
T 3ite_A          290 -----------------P----E--------DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI  340 (562)
T ss_dssp             -----------------G----G--------GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred             -----------------c----c--------ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence                             0    0        1148999999999999999999998889999999999999987776655


Q ss_pred             CCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCC--ccccCceEEECCCC
Q 006115          430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNG  507 (660)
Q Consensus       430 ~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g--~~~TGDl~~~~~~G  507 (660)
                      .......++|.|++++++++++ ++++ .+++.|+.|||+|+|++++.|||++++.+...+.+|  ||+|||+|++|+||
T Consensus       341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG  418 (562)
T 3ite_A          341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS  418 (562)
T ss_dssp             CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred             cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence            4444457899999999999998 5443 456678899999999999999999999988777777  99999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcC-cCcceEEEEecCCCC----eEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS----MLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~v~~~~~~~----~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      +|+++||.||+||+ +|++|+|.+||++|.+| |.+.+++|++.+++.    .+++++........         .++..
T Consensus       419 ~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~  488 (562)
T 3ite_A          419 SILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR---------GELRW  488 (562)
T ss_dssp             CEEEEEEC------------------------------------------------------------------------
T ss_pred             eEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc---------ccccc
Confidence            99999999999996 89999999999999998 888899888766542    34444433322100         00000


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHH-HHHHHHhh
Q 006115          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQV-EIDQLYEK  654 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t-~~GKv~R~~l~~~~~~-~l~~~y~~  654 (660)
                       .  .+-...+.++|+++++ .+||.|++|+.|++++      .+|+| ++||++|++|++++++ ...+++..
T Consensus       489 -~--~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~------~lP~t~~~GKi~r~~L~~~~~~~~~~~~~~~  552 (562)
T 3ite_A          489 -I--NENYKEINNSLRQACE-QTLPAYMVPDFIIPIS------FIPLRDTSAKTDAKALEHMFHTLSLGELFGE  552 (562)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             -c--ccchhhHHHHHHHHHH-hhCCcccCCcEEEEec------cCCCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence             0  0111223456666665 7899999999999874      46998 8999999999999975 34455543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=5.4e-68  Score=592.73  Aligned_cols=503  Identities=17%  Similarity=0.194  Sum_probs=393.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      ...|+.++|.++|+++||++|+++.   ++  +..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   83 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL   83 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence            4578999999999999999999886   42  234789999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCC---ChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          120 ACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ||+++|++++|++|..   +.+++.++++.+++++++++......+.............+..+                 
T Consensus        84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  146 (590)
T 3kxw_A           84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI-----------------  146 (590)
T ss_dssp             HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE-----------------
T ss_pred             HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee-----------------
Confidence            9999999999999987   45789999999999999999887765543221111111111111                 


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                        ..+.+.... ..........++++++|+|||||||.||+|++||+++++.+......+     ++.++|++++++|++
T Consensus       147 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          147 --ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH  218 (590)
T ss_dssp             --EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             --echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence              111111100 112223456789999999999999999999999999999999887777     889999999999999


Q ss_pred             hHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006115          277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      |.+|+.. ++.+++.|+++++.+.     ++..+++.++++++|++.++|.++..+++.+...                 
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------  281 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE-----------------  281 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG-----------------
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh-----------------
Confidence            9999986 7788999999999864     7899999999999999999999998886532111                 


Q ss_pred             HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCCCCCCce
Q 006115          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT  424 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~~~~  424 (660)
                                       .....+        .++||.+++||+++++++.+.+.+.++      .++++.||+||+++++
T Consensus       282 -----------------~~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          282 -----------------KKEGLD--------LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             -----------------GGTTCC--------CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             -----------------hccCCC--------chhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence                             011111        249999999999999999999988873      4799999999999887


Q ss_pred             ecccCC--------------------------CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccc
Q 006115          425 TVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG  478 (660)
Q Consensus       425 ~~~~~~--------------------------~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~g  478 (660)
                      +.....                          ......++|.|+++  ++|+| +++ ..+++.|+.|||+|+||+++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~G  412 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKG  412 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccc
Confidence            754321                          11233678999988  78888 543 3566678899999999999999


Q ss_pred             cCCCchhhhhcccC-------C--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH-hcCcCcc--eEE
Q 006115          479 YYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIW  546 (660)
Q Consensus       479 y~~~~~~~~~~f~~-------g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~~  546 (660)
                      |+++++.|.+.|.+       |  ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..+|.|.  +|+
T Consensus       413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~  490 (590)
T 3kxw_A          413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCA  490 (590)
T ss_dssp             BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEE
T ss_pred             ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEE
Confidence            99999999999943       5  99999999999 9999999999999997 89999999999999 8899998  799


Q ss_pred             EEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeee-EEEEecCCCC
Q 006115          547 VYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFD  623 (660)
Q Consensus       547 v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~  623 (660)
                      |++.+++  ..++++++..++..          .+    .+.+++.+++.+.+..        .|++|. .+.+++    
T Consensus       491 v~~~~~~~~~~~~~~v~~~~~~~----------~~----~~~~~l~~~l~~~l~~--------~~~~p~~~i~~v~----  544 (590)
T 3kxw_A          491 AFVIQEEHEYKLTVMCEVKNRFM----------DD----VAQDNLFNEIFELVYE--------NHQLEVHTIVLIP----  544 (590)
T ss_dssp             EEEEEETTEEEEEEEEEESCTTC----------CH----HHHHHHHHHHHHHHHH--------HHSCCCCEEEEEE----
T ss_pred             EEEecCCCCceEEEEEEeccccc----------cc----hhHHHHHHHHHHHHHH--------HcCCceeEEEEEC----
Confidence            8886544  47788888765420          00    0122333444433322        144443 455553    


Q ss_pred             CCCCccccccccchHHHHHHHHH
Q 006115          624 MERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       624 ~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      ++.+|+|++||++|++|+++|.+
T Consensus       545 ~~~lP~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          545 LKAMPHTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred             CCccCcCCCcHHHHHHHHHHHHc
Confidence            25679999999999999999865

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=5.5e-66  Score=622.00  Aligned_cols=477  Identities=20%  Similarity=0.229  Sum_probs=395.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++++++||++|+++.   +      +++||+||.++++++|++|.+.|+++|++|+|+++|++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            378999999999999999999875   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++.++|+.+++++++++......+..     ++.....+.+++..                 
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------------  591 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQT-----------------  591 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGG-----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEecccc-----------------
Confidence            99999999999999999999999999999999999875443211     11122233333211                 


Q ss_pred             HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (660)
                       .. ..  ....+.....+++++|++|||||||.||||+++|+++.+.. .....+     +++++|+++...|+.|..+
T Consensus       592 -~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~  661 (1304)
T 2vsq_A          592 -RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF  661 (1304)
T ss_dssp             -GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred             -cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence             00 00  11112234578999999999999999999999999998763 333444     7889999999999999888


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      ...++.++..|+++++.+.    ++..+.+.++++++|+++++|+++..+.+....                        
T Consensus       662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------  717 (1304)
T 2vsq_A          662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------  717 (1304)
T ss_dssp             HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred             HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence            8788899999999999874    889999999999999999999999988642100                        


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---c
Q 006115          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  432 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---~  432 (660)
                                      .+        ++||.+++|||++++++.+.+.+.+ ++.++|.||+||++++++......   .
T Consensus       718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  773 (1304)
T 2vsq_A          718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS  773 (1304)
T ss_dssp             ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred             ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence                            01        2899999999999999999888777 478999999999998776654322   2


Q ss_pred             cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECC
Q 006115          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP  505 (660)
Q Consensus       433 ~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-------~g~~~TGDl~~~~~  505 (660)
                      ....++|+|+++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.       ++||+|||+|++++
T Consensus       774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~  850 (1304)
T 2vsq_A          774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP  850 (1304)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred             CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence            2336799999999999999 6554  556678999999999999999999999999992       34999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      ||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   ..++|+++.....                
T Consensus       851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~----------------  913 (1304)
T 2vsq_A          851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL----------------  913 (1304)
T ss_dssp             TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------------
T ss_pred             CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------------
Confidence            9999999999999998 7999999999999999999999999986644   4799999876532                


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                        +.        ++|+++++ ..||.|++|+.++++      +.+|+|++||++|++|.+.
T Consensus       914 --~~--------~~l~~~l~-~~Lp~ymvP~~~~~l------~~lP~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          914 --SA--------EDVKAHLK-KQLPAYMVPQTFTFL------DELPLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             --CH--------HHHHHHHH-HHSCGGGSCSEEEEE------SCCCCCSSCSSCCSCCCCC
T ss_pred             --CH--------HHHHHHHH-HhChHhhhccEEEEe------cccCCCCCcccCHhhcCCc
Confidence              11        22333443 679999999999998      4469999999999988643

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=4.1e-56  Score=484.21  Aligned_cols=400  Identities=16%  Similarity=0.190  Sum_probs=312.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ..++.++|.++|+++||++|+++....++..+.++++||+||.++++++|++|++.|+ +||+|+++++|++++++++||
T Consensus        23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA  101 (480)
T 3t5a_A           23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG  101 (480)
T ss_dssp             -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence            5789999999999999999999871111334455899999999999999999999996 999999999999999999999


Q ss_pred             HHhCCCeEeecCC---CCChhhHHHHhhcccceEEEEccchhhhhhcccccccc-CccEEEEecCCcHHHHHHHhhCCce
Q 006115          121 CNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++|+++   .++.+++.++|+.++++++|++......+......... ....++..+...             
T Consensus       102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  168 (480)
T 3t5a_A          102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-------------  168 (480)
T ss_dssp             HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-------------
T ss_pred             HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-------------
Confidence            9999999999999   78899999999999999999999877655443221100 011222222110             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCC------CcEEE
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVYL  270 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~l  270 (660)
                              . ............++++++|+|||||||.||+|++||+++++.+......+     .+..      +++++
T Consensus       169 --------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l  234 (480)
T 3t5a_A          169 --------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV  234 (480)
T ss_dssp             --------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred             --------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence                    0 00112233445788999999999999999999999999999888876666     4555      89999


Q ss_pred             EecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006115          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      +++|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +.++|+++..++.....            
T Consensus       235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------  301 (480)
T 3t5a_A          235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------  301 (480)
T ss_dssp             ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred             EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence            9999999999765 6788999999999863     899999999999999 88899988877543110            


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCC
Q 006115          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLT  418 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~t  418 (660)
                                           .+.....        .+++||.+++||+++++++.+.+.+.++      +.+++.||+|
T Consensus       302 ---------------------~~~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T  352 (480)
T 3t5a_A          302 ---------------------DDDMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA  352 (480)
T ss_dssp             ---------------------TGGGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred             ---------------------ccccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence                                 0001111        1259999999999999999999998873      4799999999


Q ss_pred             CCCCceecccCCC------------------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCC
Q 006115          419 ETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT  474 (660)
Q Consensus       419 E~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~  474 (660)
                      |++..++......                        .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+|++
T Consensus       353 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~~  429 (480)
T 3t5a_A          353 EATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGDN  429 (480)
T ss_dssp             TTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEESTT
T ss_pred             ccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCCc
Confidence            9998877654432                        123468999999 9999999 5533 45567789999999999


Q ss_pred             cccccCCCchhhhhcc------------cCCccccCceEEECCCCcEEEEec
Q 006115          475 LFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       475 ~~~gy~~~~~~~~~~f------------~~g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      ++.||+++++.|.+.|            .+|||+|||+|+++ ||+|+++||
T Consensus       430 v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          430 VANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             SCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             cccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            9999999999999998            35699999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1.6e-49  Score=412.90  Aligned_cols=314  Identities=17%  Similarity=0.124  Sum_probs=256.6

Q ss_pred             CCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEec
Q 006115          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (660)
Q Consensus       219 ~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~  298 (660)
                      .|++++|+|||||||.||+|++||+++.+.+..+...+     +++++|++++++|++|.+|+..++.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            47899999999999999999999999999998887777     8899999999999999999988888999999998887


Q ss_pred             CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 006115          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (660)
Q Consensus       299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (660)
                      . ....+..++++++|+++++|+++..|++...                                      ...++    
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            4 2344678999999999999999998865311                                      00112    


Q ss_pred             HHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCC
Q 006115          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  458 (660)
Q Consensus       379 ~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~  458 (660)
                          ++||.+++||+++++++.+++++ +++++++.||+||++..++....+.... +++|.+.|++++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                38999999999999999999987 5999999999999998877766554333 7889999999887654       


Q ss_pred             CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH--
Q 006115          459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY--  536 (660)
Q Consensus       459 ~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l--  536 (660)
                            .|||+++|+..               .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||++|  
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence                  59999998632               27899999999999888 6677999999996 89999999999877  


Q ss_pred             -hcCcCcceEEEE-ecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCcee
Q 006115          537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH  611 (660)
Q Consensus       537 -~~~p~V~~~~v~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  611 (660)
                       .+||.|.+|+|+ +.+++   +.++|+|+.....                     .    ..++|+++++ .+||.|++
T Consensus       272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---------------------~----~~~~l~~~l~-~~L~~~~~  325 (358)
T 4gs5_A          272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---------------------A----LTERLTAEIR-SRVSTYEN  325 (358)
T ss_dssp             HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---------------------H----HHHHHHHHHH-HHSCGGGS
T ss_pred             hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC---------------------c----CHHHHHHHHH-hhCCCCCC
Confidence             468999998876 44433   3688888766532                     1    1233444554 67999999


Q ss_pred             eeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115          612 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       612 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l  648 (660)
                      |+.|++++      .+|+|++|||+|++|++++.+..
T Consensus       326 P~~i~~v~------~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          326 PKHIYFAK------AFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             CSCEEEES------SCCBCTTSCBCHHHHHHHTC---
T ss_pred             ceEEEEEC------CcCCCCCCChhHHHHHHHhhhhc
Confidence            99999984      45999999999999999876543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1.2e-43  Score=380.56  Aligned_cols=334  Identities=17%  Similarity=0.168  Sum_probs=248.7

Q ss_pred             CCCC-CCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHH-HHHHHhhcCcE
Q 006115          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (660)
Q Consensus       216 ~~~~-~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~  293 (660)
                      ...+ +++++++|||||||.||+|++||+++.+.+..+...+..  .++.++|++++..|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 899999999999999999999999998776665332221  1678999999999987655544 56777999999


Q ss_pred             EEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 006115          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (660)
Q Consensus       294 ~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (660)
                      +++.+. ++..+++.|+++++|+++++|+++..|++.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            988865 89999999999999999999999999876543321000                                   


Q ss_pred             HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeec
Q 006115          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (660)
Q Consensus       373 ~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~  452 (660)
                              ..++||.+++||+++++++.+.+++.+|+++++.||+||+++.++......   ....|.+.++++++|+| 
T Consensus       204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~g~~~~~~~~~v~i~d-  271 (436)
T 3qov_A          204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---QNGMHFWEDCYLVEIID-  271 (436)
T ss_dssp             --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---CSSEEECTTTEEEEEEC-
T ss_pred             --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---CCeeEEccCceEEEEEE-
Confidence                    014899999999999999999999999999999999999965422222211   12356677899999999 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC------c---EEEEeccCCeeEcCC
Q 006115          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQ  523 (660)
Q Consensus       453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G------~---l~~~GR~~d~i~~~~  523 (660)
                      ++++ .+++.|+.|||+|+|.            +...|.++||+|||+|+++++|      .   +++.||.||+|++ +
T Consensus       272 ~~~g-~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~  337 (436)
T 3qov_A          272 PETG-EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K  337 (436)
T ss_dssp             TTTC-SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred             CCCC-CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence            4443 4566788999999983            2334568999999999999998      5   6999999999997 7


Q ss_pred             CeeecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 006115          524 GEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  600 (660)
Q Consensus       524 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  600 (660)
                      |++|+|.+||++|.+||+|.+++|++.++   .+.++|+|+++ +..         .++..   +.+++.+.+.+.|.++
T Consensus       338 G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~---------~~~~~---~~~~l~~~l~~~l~~~  404 (436)
T 3qov_A          338 GVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS---------TDNYI---ELEKIRRDIIRQLKDE  404 (436)
T ss_dssp             TEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC---------CCCHH---HHHHHHHHHHHHHHHH
T ss_pred             CEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc---------ccchh---hHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998664   34899999988 430         00000   0123444444444332


Q ss_pred             HHHCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006115          601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  638 (660)
Q Consensus       601 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  638 (660)
                      +        .+|..+.+++    ++.+|+|+ ||++|.
T Consensus       405 ~--------~~p~~i~~v~----~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          405 I--------LVTPKVKLVK----KGSLPQSE-GKAVRV  429 (436)
T ss_dssp             H--------SSCCEEEEEC----TTCCC--------CE
T ss_pred             c--------CCceEEEEeC----CCcccCcC-CcceEE
Confidence            2        4566788774    24679999 999985

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2.1e-43  Score=379.39  Aligned_cols=337  Identities=17%  Similarity=0.141  Sum_probs=255.3

Q ss_pred             CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh-hhHHHHHHHHHHhhcCcEE
Q 006115          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (660)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~  294 (660)
                      ...++++++++|||||||.||+|++||+++...+..+...+..  .++.++|++++.+|+ .|..++...+.++..|+++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~  165 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV  165 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence            4567899999999999999999999999988766554332211  168899999999998 5777776778888999999


Q ss_pred             EEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 006115          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (660)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (660)
                      ++.+. ++..+++.|+++++|+++++|+++..|++.........                                    
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  209 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------  209 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88776 99999999999999999999999999876533211000                                    


Q ss_pred             HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006115          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (660)
Q Consensus       374 ~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~iv~~  452 (660)
                             ..++||.+++||+++++++.+.+++.+|+++++.||+||+++. +........   ...+.+.+++.++|+| 
T Consensus       210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  278 (443)
T 2y4o_A          210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-  278 (443)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred             -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence                   0148999999999999999999999899999999999998543 222211111   1245567899999998 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-CcE-----EEEeccCCeeEcCCCee
Q 006115          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY  526 (660)
Q Consensus       453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~-G~l-----~~~GR~~d~i~~~~G~~  526 (660)
                      ++++ .+++.|+.|||+|+|.            +.+.|.++||+|||+|+++++ |++     ++.||.||+|++ +|++
T Consensus       279 ~~~g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~  344 (443)
T 2y4o_A          279 PVTG-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN  344 (443)
T ss_dssp             TTTC-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred             CCCC-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence            5433 4566788999999983            233456899999999999999 986     899999999997 7999


Q ss_pred             ecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcCh--hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 006115          527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  601 (660)
Q Consensus       527 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  601 (660)
                      |+|.+||++|.+||+|.+++|++.++   .+.++++|++.+  +..          .+.   .+.+++.+.+.+      
T Consensus       345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~~---~~~~~l~~~l~~------  405 (443)
T 2y4o_A          345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VTD---GERAALARELQH------  405 (443)
T ss_dssp             ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CCH---HHHHHHHHHHHH------
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------chh---hHHHHHHHHHHH------
Confidence            99999999999999999999887532   347889998876  310          000   011223333332      


Q ss_pred             HHCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115          602 ERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       602 ~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                         .|+.| .+|..+.+++    ++++|+|++||++|+..+
T Consensus       406 ---~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~  439 (443)
T 2y4o_A          406 ---RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDR  439 (443)
T ss_dssp             ---HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEEC
T ss_pred             ---HHHHHhCCceEEEEeC----CCcccCccCCcceEEEec
Confidence               33344 4677777773    256799999999997543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=9.4e-43  Score=373.62  Aligned_cols=334  Identities=18%  Similarity=0.175  Sum_probs=254.7

Q ss_pred             CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh-hhHHHHHHHHHHhhcCcEE
Q 006115          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (660)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~  294 (660)
                      ...++++++++|||||||.||+|++||+++...+..+...+..  .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~  163 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV  163 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence            4567899999999999999999999999988776544332111  167899999999998 6777777778889999999


Q ss_pred             EEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 006115          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (660)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (660)
                      ++.+. ++..+++.|+++++|+++++|+++..|++.........                                    
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  207 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------  207 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88776 99999999999999999999999999876533211000                                    


Q ss_pred             HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006115          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (660)
Q Consensus       374 ~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~iv~~  452 (660)
                             ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. ++.......   ...+.+.+++.++|+| 
T Consensus       208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  276 (437)
T 2y27_A          208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID-  276 (437)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred             -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence                   0148999999999999999999998889999999999998443 332221111   1255667899999998 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC-CCcE-----EEEeccCCeeEcCCCee
Q 006115          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY  526 (660)
Q Consensus       453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~-~G~l-----~~~GR~~d~i~~~~G~~  526 (660)
                      ++++ .+++.|+.|||+|+|.            +.+.|.++||+|||+|++++ +|++     ++.||.||+|++ +|++
T Consensus       277 ~~~g-~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~  342 (437)
T 2y27_A          277 PETG-EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN  342 (437)
T ss_dssp             TTTC-CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred             CCCC-CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence            5433 4566788999999983            33445689999999999998 6985     899999999997 8999


Q ss_pred             ecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHH
Q 006115          527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  603 (660)
Q Consensus       527 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  603 (660)
                      |+|.+||++|.+||+|.+++|++.++   .+.++|+|++.++..          .+.   .+.+++.+.+.+        
T Consensus       343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~----------~~~---~~~~~l~~~l~~--------  401 (437)
T 2y27_A          343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA----------PDT---AAIQVAKQALAY--------  401 (437)
T ss_dssp             ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT----------TCH---HHHHHHHHHHHH--------
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc----------chh---hhHHHHHHHHHH--------
Confidence            99999999999999999998887432   357899998876430          000   011223333332        


Q ss_pred             CCCCCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006115          604 NKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  639 (660)
Q Consensus       604 ~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~  639 (660)
                       .|+.| .+|..+.+++    ++++|+|+ ||++|+.
T Consensus       402 -~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          402 -DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV  432 (437)
T ss_dssp             -HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred             -HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence             34455 4677777763    25679999 9999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=2.3e-27  Score=248.05  Aligned_cols=237  Identities=17%  Similarity=0.151  Sum_probs=172.7

Q ss_pred             CCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh-hhHHHHHHHHHHhhcCcEEE
Q 006115          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (660)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v  295 (660)
                      ..++++++++|||||||.||+|.++|+++...+..+...+..  .++..+|++++.+|+ +|..|+...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            467889999999999999999999999999988754433222  167899999999999 99999888777788999444


Q ss_pred             EecCChH-----------------------HHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006115          296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (660)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (660)
                      ....++.                       .+++.++++++|+++++|+++..|++.....                   
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-------------------  226 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-------------------  226 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-------------------
Confidence            3333666                       7888999999999999999999987542111                   


Q ss_pred             HHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH-Hhc-CCceeeecCCCCCCCceecccCC
Q 006115          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                        ..++        ++||.+++||+++++++.+.++ +.| ++++++.||+||+++++..++. 
T Consensus       227 ------------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          227 ------------------LQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             ------------------HHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             ------------------cccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                              1112        2899999999999999999999 898 8999999999999876643321 


Q ss_pred             CccccCccCCC------ccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEC
Q 006115          431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL  504 (660)
Q Consensus       431 ~~~~~~~~G~~------~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~  504 (660)
                           .++|.+      +++++++|+| ++++ .+++.|+.|||+|++...            ..+ --.|+|||++.+.
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g-~~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~  339 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SITA-QTVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIRL  339 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTTC-SBCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCCC-cCCCCCCceEEEEEEcCc------------ccc-cccccCCceEEEe
Confidence                 247888      9999999999 5333 466678999999998321            111 1137889988874


Q ss_pred             CC--C-------cEEEEeccCCeeEc
Q 006115          505 PN--G-------VVKIIDRKKNLIKI  521 (660)
Q Consensus       505 ~~--G-------~l~~~GR~~d~i~~  521 (660)
                      +.  |       .+..++|.++..++
T Consensus       340 ~~~~g~~~d~~~~v~~~~~~~~~~~i  365 (369)
T 3hgu_A          340 PGVSGFAGDRLADIEPLKISEGRKVI  365 (369)
T ss_dssp             CCSTTCSSCEEEEEEECC--------
T ss_pred             cCCCCCcCcccccceeccccCCCcee
Confidence            32  2       24556666666665

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.28  E-value=6.5e-12  Score=105.38  Aligned_cols=98  Identities=11%  Similarity=-0.006  Sum_probs=64.0

Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      .|.||||++ +|.+|+|.+||++|.+||+|.++++++.+++   +.+.++|+..++..                 .+.+.
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~-----------------~~~~~   62 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT-----------------DDYGR   62 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc-----------------cccch
Confidence            489999997 7999999999999999999999999886544   36788888776430                 12222


Q ss_pred             HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006115          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  637 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R  637 (660)
                      .+.+.+.|.+.++..    +.++..+.+++    .+++|+| +||++|
T Consensus        63 ~~~l~~~i~~~l~~~----~gv~~~v~~v~----~~~lPrt-sGKi~R  101 (109)
T 3lax_A           63 LQALTREITRQLKDE----ILVTPRVKLVP----KGALPKS-EGKAVR  101 (109)
T ss_dssp             HHHHHHHHHHHHHHH----HSSCCEEEEEC----TTCSCCC----CCC
T ss_pred             hhhhHHHHHHHHHHH----hCCccceEEEc----CCeecCC-CCCcch
Confidence            233333443333211    11233466663    3678998 799988

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.79  E-value=4.6e-08  Score=104.91  Aligned_cols=131  Identities=18%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-Ccc-CeeEEeeecCCCC-C--
Q 006115          385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSV-YSELRLEEVPEMG-Y--  457 (660)
Q Consensus       385 lr~v~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~-~~~v~iv~~~~~~-~--  457 (660)
                      +.+++.||.   ......++..+ +.++. ..|++||+. +.....+..  .+...+. .++ ..-.+.++.++.. .  
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~~~~~~~~L~~~~~ffEFip~~~~~~~~~  375 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLC--KPEDVSYTFMPNMSYFEFIPMDGGDKNDV  375 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCCC--CcccCceeecCCcEEEEEEeccccCCCcE
Confidence            555566663   44555666555 67777 899999953 222111111  1011221 122 2334445422211 1  


Q ss_pred             ---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCCeeecch
Q 006115          458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE  530 (660)
Q Consensus       458 ---~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~  530 (660)
                         ..+..|+.+||+|+..+   |.|+             |++||+.+++.    ..++.|+||.+++|.+ .|+++++.
T Consensus       376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~  438 (581)
T 4eql_A          376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE  438 (581)
T ss_dssp             EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred             eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence               12335678999998853   4333             89999999875    4579999999999997 79999999


Q ss_pred             hHHHHHhc
Q 006115          531 YLENVYCV  538 (660)
Q Consensus       531 ~iE~~l~~  538 (660)
                      +||++|.+
T Consensus       439 ~v~~al~~  446 (581)
T 4eql_A          439 DLFKAVSQ  446 (581)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999964

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.63  E-value=7.2e-08  Score=103.48  Aligned_cols=155  Identities=13%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-Ccc-CeeEEeeecCCC-----
Q 006115          385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSV-YSELRLEEVPEM-----  455 (660)
Q Consensus       385 lr~v~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~-~~~v~iv~~~~~-----  455 (660)
                      +.+++.||.   ......++..+ +.+++ ..|++||+-. .....+..  .+...+. .+| ..-.+.++.++.     
T Consensus       307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~~~~~~  380 (609)
T 4b2g_A          307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYF-GLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHSSIPLS  380 (609)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEE-EECSCTTS--CGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred             EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceee-eeecCCCC--CcccCceeecCCcEEEEEEeccccccccc
Confidence            445555552   44445566555 67777 8999999632 22221111  1111111 112 133344442221     


Q ss_pred             -C--C-----CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCC
Q 006115          456 -G--Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ  523 (660)
Q Consensus       456 -~--~-----~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~  523 (660)
                       .  .     ..+..|+.+||+|+..   .|+|+             |++||+++++.    ..++.|+||.+++|++ .
T Consensus       381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~  443 (609)
T 4b2g_A          381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D  443 (609)
T ss_dssp             SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence             0  0     1233567899999874   35554             99999999973    4689999999999997 7


Q ss_pred             CeeecchhHHHHHhc------Cc--CcceEEEEecC--CCCeEEEEEEc
Q 006115          524 GEYVALEYLENVYCV------AP--IIEDIWVYGDS--LKSMLVAVVVP  562 (660)
Q Consensus       524 G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~--~~~~~~a~v~~  562 (660)
                      |+++++.+||++|.+      ..  .|.|..++...  .+...+.+.++
T Consensus       444 Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl  492 (609)
T 4b2g_A          444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL  492 (609)
T ss_dssp             SCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEE
Confidence            999999999999962      12  35565554322  22344545554

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.55  E-value=2.1e-06  Score=91.88  Aligned_cols=159  Identities=19%  Similarity=0.142  Sum_probs=92.0

Q ss_pred             CcEeEE--EEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccC-eeEEeeecCCCC
Q 006115          383 GRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEMG  456 (660)
Q Consensus       383 ~slr~v--~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~iv~~~~~~  456 (660)
                      ++++.|  +.+|. + ......++..+ +.++. ..|++||+-. .....+.  ..++..+. .+|+ .-.+.++.++.+
T Consensus       302 Pnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~--~~~~~~~~~L~p~~~ffEFiP~~~~~  376 (581)
T 4epl_A          302 PNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTPR--LSPEEATFAVIPNLGYFEFLPVSETG  376 (581)
T ss_dssp             TTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCTT--SCTTTCCEEECTTSCEEEEEEC----
T ss_pred             CCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCCC--CCccccceeecCCcEEEEEEeccccc
Confidence            567533  33442 2 33445666555 67777 8999999632 2222111  11111121 1222 223334322211


Q ss_pred             C--------CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCC
Q 006115          457 Y--------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQG  524 (660)
Q Consensus       457 ~--------~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G  524 (660)
                      .        ..+..|+.+||+|+...   |.|+             |++||..++..    ..++.|+||.++++.+ .|
T Consensus       377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~G  439 (581)
T 4epl_A          377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NI  439 (581)
T ss_dssp             ---CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SS
T ss_pred             CCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-ee
Confidence            1        12335678999998753   4443             89999999864    2479999999999997 79


Q ss_pred             eeecchhHHHHHhc------Cc--CcceEEEEecCC--CCeEEEEEEcC
Q 006115          525 EYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC  563 (660)
Q Consensus       525 ~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~--~~~~~a~v~~~  563 (660)
                      +++++.+||+++.+      ..  .|.|..++....  +...+.+.++.
T Consensus       440 e~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~  488 (581)
T 4epl_A          440 DKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS  488 (581)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred             eECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence            99999999999953      22  466666655322  23455555654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=90.05  E-value=1.9  Score=44.73  Aligned_cols=121  Identities=8%  Similarity=-0.057  Sum_probs=88.4

Q ss_pred             CCCcee-eeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCh--hhHHHHHHHHHhCCCeEeec
Q 006115           57 GNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL  131 (660)
Q Consensus        57 d~~a~~-~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~i  131 (660)
                      +.++++ +.   .|.+|..+  .+|...+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.+++.
T Consensus        86 ~~~a~i~~T---SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~  162 (436)
T 3qov_A           86 RDGVRIHSS---SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPA  162 (436)
T ss_dssp             HHEEEEEEC---SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECC
T ss_pred             CCeEEEEEC---CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeC
Confidence            445543 33   56666543  689999999888888888888999999999888754  33445678889999998877


Q ss_pred             CCCCChhhHHHHhhcccceEEEEccchhhhhhccccc-----cccCccEEEEecC
Q 006115          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS  181 (660)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~  181 (660)
                      ++. .++.+...|++.++.+++........+......     .+..++.++.-..
T Consensus       163 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  216 (436)
T 3qov_A          163 AAG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE  216 (436)
T ss_dssp             CSC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred             CCC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence            654 678888999999999999988877665443211     1356666666554

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=89.52  E-value=2  Score=44.53  Aligned_cols=105  Identities=14%  Similarity=0.079  Sum_probs=80.3

Q ss_pred             CCCCcee-eeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCh--hhHHHHHHHHHhCCCeEee
Q 006115           56 PGNRMLG-WRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (660)
Q Consensus        56 pd~~a~~-~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~  130 (660)
                      ++.++++ +.   .|.+|..  ..+|...+...+..++..+...|+.++|++...++.+  ......+++++..|+.+++
T Consensus        89 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           89 QDRISRIHAS---SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             GGGCCEEEEC---CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             hhHeEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            4555544 34   5666654  3679999988888888888888999999999888863  3334567888999999887


Q ss_pred             cCCCCChhhHHHHhhcccceEEEEccchhhhhhc
Q 006115          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (660)
Q Consensus       131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  164 (660)
                      ++.. +++.+...|++.++.+++........+..
T Consensus       166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  198 (437)
T 2y27_A          166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD  198 (437)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence            7654 78889999999999999998887765543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=89.32  E-value=2  Score=44.62  Aligned_cols=105  Identities=13%  Similarity=0.088  Sum_probs=80.5

Q ss_pred             CCCCce-eeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCh--hhHHHHHHHHHhCCCeEee
Q 006115           56 PGNRML-GWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (660)
Q Consensus        56 pd~~a~-~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~  130 (660)
                      ++.+++ .+.   .|.+|..+  .+|...+...+..++..+...|+.++|++...++-+  .......++++..|+.+++
T Consensus        91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            455553 444   56666644  578999988888888888888999999999888864  3344567888899999888


Q ss_pred             cCCCCChhhHHHHhhcccceEEEEccchhhhhhc
Q 006115          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (660)
Q Consensus       131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  164 (660)
                      +++. +++.+...|++.++.+++........+..
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  200 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID  200 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence            7664 78888899999999999998887665533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	660
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-67
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-62
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-56
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-42
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-40
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	5e-34

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  231 bits (589), Expect = 1e-67
 Identities = 89/554 (16%), Positives = 174/554 (31%), Gaps = 77/554 (13%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
                                       A M  G K  E +  +               L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376

Query: 386 RLVISGGAPLSTEV-EEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
           R++ S G P++ E  E + +        +V  +  TET G      P  + +  G+A   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
               +  L  V   G  P +    G + +           + + +   ++        + 
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLK 553
           +GD  +   +G   I  R  +++ +S G  +    +E+     P I +  V G       
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 552

Query: 554 SMLVAVVVPCEEDT 567
             + A V     + 
Sbjct: 553 QAIYAYVTLNHGEE 566

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  213 bits (543), Expect = 4e-62
 Identities = 126/553 (22%), Positives = 194/553 (35%), Gaps = 90/553 (16%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                     L  + +        LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291

Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
           + GG+     +           + QGYGLTET       F           +++ +    
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
           G       LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKS 554
           GDI      G V+I DR K+LIK   GE+++   LEN     P +++  V        + 
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 468

Query: 555 MLVAVVVPCEEDT 567
             +AVVVP  E  
Sbjct: 469 RPLAVVVPRGEKP 481

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  199 bits (507), Expect = 4e-56
 Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 84/559 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                           R L+R     +  + L                            
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361

Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
              LR + S G P++ EV E+           +V  Y  TE+           +  +  G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII--- 491
           +A       +  + + P  G         G + V+    +     +KN D   ++ +   
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
            G++ TGD      +G + I+ R  +++ +S G  ++   +E      PI+ +  V G  
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFN 537

Query: 550 -DSLKSMLVAVVVPCEEDT 567
            D     + A VV   + +
Sbjct: 538 DDLTGQAVAAFVVLKNKSS 556

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  176 bits (446), Expect = 2e-48
 Identities = 120/535 (22%), Positives = 195/535 (36%), Gaps = 73/535 (13%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F              
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                       K  L                               L  + SGGAPLS 
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318

Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E  E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++    
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
              ++    GE+CVRG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR 
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
           K+LIK   G  VA   LE++    P I D  V G   D    +  AVVV     T
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT 489

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  157 bits (396), Expect = 6e-42
 Identities = 91/530 (17%), Positives = 153/530 (28%), Gaps = 78/530 (14%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  + + ++  +       +A   A   A   +K      LR V   GA +   V 
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
           E +        V  YG TE      +  P     +       V     +     +     
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +      +     + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++I 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
              GE +    +E V   AP + ++ V G         + A VVP   +T
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  153 bits (386), Expect = 2e-40
 Identities = 85/535 (15%), Positives = 166/535 (31%), Gaps = 101/535 (18%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+                                        ++      
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247

Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
           +    + + ++  + +            +L+ +            +I+ G+  S  +   
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296

Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
            +       +  YG TET    T     +  +  +    +     ++  V E        
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353

Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +       +  + TGD  + L +G ++ + R 
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
            N +KI  G  V LE +E++      I +  V        +  L A  V  +   
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  134 bits (337), Expect = 5e-34
 Identities = 90/533 (16%), Positives = 165/533 (30%), Gaps = 81/533 (15%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
               F  + + K+    +             +     +      L+++  GGA  S E  
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
             ++      L Q +G+ E     T     E  +V T G P+S Y E R+    +     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372

Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
           +     G +  RG     GYYK  +    S  + G++ TGDI ++  +G + +  R K+ 
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432

Query: 519 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDTK 568
           I    GE VA E +EN     P + D  +       L       ++P +E  K
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	660
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.1e-73  Score=634.72  Aligned_cols=525  Identities=16%  Similarity=0.184  Sum_probs=417.1

Q ss_pred             CCCCC-CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH
Q 006115           36 SVDSD-LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (660)
Q Consensus        36 ~~~~~-~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~  114 (660)
                      +.++. .|-..++|+++++++||++|+++.   ..+++..+++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus        65 wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~  141 (643)
T d1pg4a_          65 WYEDGTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA  141 (643)
T ss_dssp             ESTTCEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH
T ss_pred             eCCCChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH
Confidence            44443 344566777889999999999986   55556678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhh---------ccc-cccccCccEEEEecCCcH
Q 006115          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPD-CRSAQRLRVMVCFTSLTA  184 (660)
Q Consensus       115 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~-~~~~~~~~~i~~~~~~~~  184 (660)
                      ++++|||+++|++++|+++.++++++.++|++++++++|+++.......         ..+ ......+..++.+.....
T Consensus       142 iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  221 (643)
T d1pg4a_         142 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS  221 (643)
T ss_dssp             HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred             HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCc
Confidence            9999999999999999999999999999999999999999875332111         111 112345566666654321


Q ss_pred             HHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCC
Q 006115          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKM  263 (660)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~  263 (660)
                      ..    .........+....... ..........++++++|+|||||||.||+|+++|++++..... +...+     ++
T Consensus       222 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~  291 (643)
T d1pg4a_         222 DI----DWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DY  291 (643)
T ss_dssp             CC----CCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TC
T ss_pred             cc----ccccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CC
Confidence            00    00011122334443332 2333445567899999999999999999999999997655444 33344     78


Q ss_pred             CCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006115          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (660)
Q Consensus       264 ~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (660)
                      .++|++++..|++|.+|+.. ++.+|++|+++++++.     ++..+++.++++++|+++++|+++..|++....     
T Consensus       292 ~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~-----  366 (643)
T d1pg4a_         292 HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-----  366 (643)
T ss_dssp             CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch-----
Confidence            89999999999999999876 5677999999999763     789999999999999999999999988653111     


Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CCceeee
Q 006115          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CAFLVQG  414 (660)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~---~~~v~~~  414 (660)
                                                    ..+..+        +++||.++++|+++++++.+++.+.+   ++++++.
T Consensus       367 ------------------------------~~~~~d--------l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~  408 (643)
T d1pg4a_         367 ------------------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT  408 (643)
T ss_dssp             ------------------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEE
T ss_pred             ------------------------------hccccC--------CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEe
Confidence                                          111111        24899999999999999999999888   4779999


Q ss_pred             cCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc-
Q 006115          415 YGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI-  490 (660)
Q Consensus       415 YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f-  490 (660)
                      ||+||+++.++...++. ....+++|+|++|++++|+| +++.  +++.++.|||+|+|  |+++.||+++++.+.+.+ 
T Consensus       409 yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~--~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~  485 (643)
T d1pg4a_         409 WWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF  485 (643)
T ss_dssp             BCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHH
T ss_pred             echhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCC--CCCCCceEEEEEecCCCcccccccCChhhchhhhc
Confidence            99999998766554433 34568999999999999999 6655  44566899999999  568899999998887665 


Q ss_pred             --cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChh
Q 006115          491 --IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  565 (660)
Q Consensus       491 --~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~  565 (660)
                        .+|||+|||+|++|+||+|+++||+||+|++ +|++|+|.+||++|.+||.|.||+|++.+++   +.++|||+++++
T Consensus       486 ~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~  564 (643)
T d1pg4a_         486 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG  564 (643)
T ss_dssp             SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred             ccCCCeEEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCC
Confidence              5899999999999999999999999999996 7999999999999999999999999997654   379999999875


Q ss_pred             hHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115          566 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      ..                 .++++    .++|+++++ ++|+.|++|+.|+++      +++|+|++||++|++|++++.
T Consensus       565 ~~-----------------~~~~~----~~~i~~~~~-~~L~~~~vP~~i~~v------~~lP~T~sGKi~R~~Lr~~~~  616 (643)
T d1pg4a_         565 EE-----------------PSPEL----YAEVRNWVR-KEIGPLATPDVLHWT------DSLPKTRSGKIMRRILRKIAA  616 (643)
T ss_dssp             CC-----------------CCHHH----HHHHHHHHH-HHTCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHHHHH
T ss_pred             CC-----------------CCHHH----HHHHHHHHH-hhCCcccCccEEEEE------CCCCCCCCcCccHHHHHHHhc
Confidence            41                 22333    334555554 679999999999987      456999999999999999987


Q ss_pred             HHH
Q 006115          646 VEI  648 (660)
Q Consensus       646 ~~l  648 (660)
                      .+.
T Consensus       617 ~~~  619 (643)
T d1pg4a_         617 GDT  619 (643)
T ss_dssp             TC-
T ss_pred             CCc
Confidence            643

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-72  Score=629.59  Aligned_cols=535  Identities=18%  Similarity=0.186  Sum_probs=413.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCChhhHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~l~~~n~~~~~~~~l  119 (660)
                      .|...++|+++|+++||++|+++.   ..+++..+++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|
T Consensus        58 lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~l  134 (640)
T d1ry2a_          58 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  134 (640)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            456688999999999999999986   555666789999999999999999997 6799999999999999999999999


Q ss_pred             HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhh--------hccccccccCccEEEEecCCcHHHHHHHh
Q 006115          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      ||+++|++++|+++.++++++.++++.+++++++++.......        ........................   ..
T Consensus       135 A~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  211 (640)
T d1ry2a_         135 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VA  211 (640)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CC
T ss_pred             HhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc---cc
Confidence            9999999999999999999999999999999999987643211        111112223333333332221100   00


Q ss_pred             hCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccc-ccccccCCCCCCcEEE
Q 006115          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYL  270 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l  270 (660)
                      ........+....... .......+..++++++|+|||||||.||||+++|.+++........ .+     .+.++|+++
T Consensus       212 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l  285 (640)
T d1ry2a_         212 FHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF  285 (640)
T ss_dssp             CCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred             cccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCccccee
Confidence            0001112222222221 2333445567889999999999999999999999998777655433 33     688999999


Q ss_pred             EecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006115          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      +++|++|.+|+.. ++.++..|+++++++.     ++..+++.++++++|+++++|+++..|.+..              
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------------  351 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG--------------  351 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc--------------
Confidence            9999999999875 6677999999888764     7889999999999999999999998875321              


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCCCC
Q 006115          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC  421 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~  421 (660)
                                           ....+..++        ++||.+++||+++++++.+++.+.+|   +++++.||+||++
T Consensus       352 ---------------------~~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~  402 (640)
T d1ry2a_         352 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  402 (640)
T ss_dssp             ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             ---------------------ccccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccc
Confidence                                 011111122        49999999999999999999999885   5699999999999


Q ss_pred             CceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCCc
Q 006115          422 GPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (660)
Q Consensus       422 ~~~~~~~~~~--~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f---~~g~  494 (660)
                      ........+.  ....+++|.|++|++++|+| ++++....+.+..|||++++  |+++.||+++++.+.+.|   .+||
T Consensus       403 ~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw  481 (640)
T d1ry2a_         403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY  481 (640)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred             cccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCe
Confidence            8776655433  34458999999999999999 77776666666779999998  689999999999998887   4599


Q ss_pred             cccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHH
Q 006115          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  571 (660)
Q Consensus       495 ~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~  571 (660)
                      |+|||+|++|+||+|+++||.||+|++ +|++|+|.+||++|.+||.|.||+|+|.+++   +.++|+|+++++..... 
T Consensus       482 ~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~-  559 (640)
T d1ry2a_         482 YFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST-  559 (640)
T ss_dssp             EEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred             EEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccc-
Confidence            999999999999999999999999996 8999999999999999999999999998765   37999999988642110 


Q ss_pred             HHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006115          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~  651 (660)
                                   ...+..+.+.++|.++++ ++|+.|++|+.|++++      ++|+|++|||+|++||+++..+.+++
T Consensus       560 -------------~~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~R~~Lr~~~~~~~~~~  619 (640)
T d1ry2a_         560 -------------ATDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVD------DLPKTRSGKIMRRILRKILAGESDQL  619 (640)
T ss_dssp             ------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECS------CCCBCTTSCBCHHHHHHSCC------
T ss_pred             -------------cchHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeC------CCCCCCCcCccHHHHHHHHhCCcccc
Confidence                         001112234556666665 6899999999999974      46999999999999999998776666


Q ss_pred             Hh
Q 006115          652 YE  653 (660)
Q Consensus       652 y~  653 (660)
                      .+
T Consensus       620 ~d  621 (640)
T d1ry2a_         620 GD  621 (640)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-71  Score=609.50  Aligned_cols=508  Identities=24%  Similarity=0.305  Sum_probs=388.5

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~  116 (660)
                      +-++..||.++|+++|+++||++|+++.     .+++++++||+||.+++.++|++|.+.|+++||+|+++++|++++++
T Consensus         6 ~~~~~~~l~~~l~~~a~~~pd~~av~~~-----~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~   80 (534)
T d1v25a_           6 MMDEELNLWDFLERAAALFGRKEVVSRL-----HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE   80 (534)
T ss_dssp             BCCCCCCTHHHHHHHHHHSTTCEEEEEC-----TTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCeEEEEe-----cCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHH
Confidence            3455668999999999999999999876     34566889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++|||+++|++++|++|.++.+++.++|+.+++++++++.......... .........++........          .
T Consensus        81 ~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~  149 (534)
T d1v25a_          81 AYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI-RGELKTVQHFVVMDEKAPE----------G  149 (534)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH-GGGCSSCCEEEESSSCCCT----------T
T ss_pred             HHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHH-hhcccccceeEEeeccccc----------c
Confidence            9999999999999999999999999999999999999999877665433 2334455555554433210          0


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      ....... .   ..........++++++++|||||||.||+|+++|.+++..+.......   ......++++++.+|++
T Consensus       150 ~~~~~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~  222 (534)
T d1v25a_         150 YLAYEEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMF  222 (534)
T ss_dssp             CEEHHHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTT
T ss_pred             ccccccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchh
Confidence            1111111 0   122233455788999999999999999999999999986654432222   22678899999999999


Q ss_pred             hHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          277 HILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |.+++...+..+..|+++++...  ++..+...+.++++|+++++|.++..++.......                    
T Consensus       223 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~--------------------  282 (534)
T d1v25a_         223 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--------------------  282 (534)
T ss_dssp             SHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT--------------------
T ss_pred             hhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc--------------------
Confidence            99999988888888888777655  89999999999999999999999998876533221                    


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc--
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM--  432 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~--  432 (660)
                                               ...++||.+++||++++++..+++++ ++..+++.||+||++..++.......  
T Consensus       283 -------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~  336 (534)
T d1v25a_         283 -------------------------HRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLE  336 (534)
T ss_dssp             -------------------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGT
T ss_pred             -------------------------ccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCcccc
Confidence                                     11259999999999999999999886 58999999999999998876543321  


Q ss_pred             --------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEE
Q 006115          433 --------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  503 (660)
Q Consensus       433 --------~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~  503 (660)
                              ...+++|+|++|++++|+| +++...+.+.++.|||+|+|++++.||+++++.+...| .+|||+|||+|++
T Consensus       337 ~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~  415 (534)
T d1v25a_         337 SLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVW  415 (534)
T ss_dssp             TSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEE
T ss_pred             ccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEE
Confidence                    2346899999999999999 88888888778899999999999999999999999998 8999999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcH
Q 006115          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      ++||++++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++.   .++|+|+++.+..             
T Consensus       416 ~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~-------------  481 (534)
T d1v25a_         416 DEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP-------------  481 (534)
T ss_dssp             CTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------
T ss_pred             CCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCC-------------
Confidence            999999999999999996 89999999999999999999999999976543   6888888875431             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                          ..+++.+       ..+ +..||.|++|+.|+++      +++|+|++|||+|++||++|++
T Consensus       482 ----~~~~~~~-------~~~-~~~l~~~~~P~~i~~~------~~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         482 ----TPEELNE-------HLL-KAGFAKWQLPDAYVFA------EEIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             ------------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             ----CHHHHHH-------HHH-HhcCCcCCCccEEEEE------CCCCCCCCccccHHHHHHHHHh
Confidence                0111111       112 4789999999999987      4469999999999999998854

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=7e-69  Score=591.63  Aligned_cols=512  Identities=24%  Similarity=0.262  Sum_probs=394.6

Q ss_pred             CCCCCCcHHHHHHHHHHhC---CCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh
Q 006115           37 VDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~---pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~  113 (660)
                      .|-...|+.+.|.++++++   |+.+|+++.   ..    .+++||+||.+++.++|++|+++|+++||+|+++++|+++
T Consensus        12 ~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~----~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e   84 (541)
T d1lcia_          12 YPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HI----EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ   84 (541)
T ss_dssp             SCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS
T ss_pred             CCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CC----CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH
Confidence            3334568999999999988   444555432   21    1579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006115          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+.+.. ..++..+.++..+....         
T Consensus        85 ~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------  154 (541)
T d1lcia_          85 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD---------  154 (541)
T ss_dssp             THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------
T ss_pred             HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc---------
Confidence            99999999999999999999999999999999999999999998877664433 35566777777654321         


Q ss_pred             CceeeeHHHHHhcCc------cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCc
Q 006115          194 GIKPYSWDEFLHLGK------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (660)
                      ......+........      ....+.....++++++|+|||||||.||+|++||++++..+......+..  .....++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~--~~~~~~~  232 (541)
T d1lcia_         155 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG--NQIIPDT  232 (541)
T ss_dssp             BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS--CCCCTTC
T ss_pred             ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccc--ccccccc
Confidence            112233333332211      11223344567899999999999999999999999998877665443321  1567899


Q ss_pred             EEEEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006115          268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++++++|++|.+++...+..+..++..+.... +.......+..+++|.++.+|.++..++.....              
T Consensus       233 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~--------------  298 (541)
T d1lcia_         233 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI--------------  298 (541)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG--------------
T ss_pred             cccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc--------------
Confidence            99999999999999888888777777777665 899999999999999999999999887642111              


Q ss_pred             HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCcee
Q 006115          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTT  425 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~  425 (660)
                                             ..        ...++++.+++||+++++...+++.+.++. .+++.||+||+++.++
T Consensus       299 -----------------------~~--------~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  347 (541)
T d1lcia_         299 -----------------------DK--------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL  347 (541)
T ss_dssp             -----------------------GG--------SCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSE
T ss_pred             -----------------------cc--------cccccceEEEecccccccccccccccccCCceeeecCCccccCceEE
Confidence                                   01        112489999999999999999999988864 5899999999999888


Q ss_pred             cccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEC
Q 006115          426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL  504 (660)
Q Consensus       426 ~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~  504 (660)
                      ........ .+++|+|+|+++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+...+ .+|||+|||+|+++
T Consensus       348 ~~~~~~~~-~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~  424 (541)
T d1lcia_         348 ITPEGDDK-PGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD  424 (541)
T ss_dssp             ECCCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             ecCcccCC-CCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEc
Confidence            77655543 48999999999999999 5443 456677899999999999999999999888887 68999999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      ++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++++.        ..     
T Consensus       425 ~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~-----  490 (541)
T d1lcia_         425 EDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK--------TM-----  490 (541)
T ss_dssp             TTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC-----
T ss_pred             CCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC--------CC-----
Confidence            99999999999999997 7999999999999999999999999987544   3788999987653        11     


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115          582 ELCSLVQLQNYILSELKNAAERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                         +.++        |.++++ ..|+++ ++|+.+++++      .+|+|++|||+|++|++++.++
T Consensus       491 ---~~~~--------l~~~~~-~~l~~~~~~p~~i~~v~------~lP~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         491 ---TEKE--------IVDYVA-SQVTTAKKLRGGVVFVD------EVPKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             ---CHHH--------HHHHHH-HHSCGGGSCTTEEEEES------SCCC-----CCHHHHHHHHHHH
T ss_pred             ---CHHH--------HHHHHH-HhCCccccCCcEEEEeC------CCCcCCCcCccHHHHHHHHHHh
Confidence               1122        333333 445555 5788888874      4699999999999999998764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.6e-65  Score=559.38  Aligned_cols=474  Identities=20%  Similarity=0.229  Sum_probs=390.0

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~  118 (660)
                      +...||.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~   90 (514)
T d1amua_          20 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI   90 (514)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence            36689999999999999999999975    3     68999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|+++.++.+++.++++.++++++|++......+.......     ........                
T Consensus        91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~----------------  149 (514)
T d1amua_          91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEED----------------  149 (514)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCS----------------
T ss_pred             HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccc----------------
Confidence            999999999999999999999999999999999999998776654332211     11111110                


Q ss_pred             eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (660)
                           ............+..++++++|+|||||||.||+|.+||.++...+......+     ....++++++..|++|.
T Consensus       150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  219 (514)
T d1amua_         150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD  219 (514)
T ss_dssp             -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred             -----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccccc
Confidence                 01111222233456788999999999999999999999999999999988777     88999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      +++...+.++..|+++++...    +...+.+.+..+.++.+..+|.......                           
T Consensus       220 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  272 (514)
T d1amua_         220 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD---------------------------  272 (514)
T ss_dssp             HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC---------------------------
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc---------------------------
Confidence            999988888889999888763    6788889999999999999987644310                           


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--c
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--M  432 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--~  432 (660)
                                              ...+.+++.++++|+.+++++.+++.+  ++.+++.||+||++.+++......  .
T Consensus       273 ------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~  326 (514)
T d1amua_         273 ------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI  326 (514)
T ss_dssp             ------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred             ------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccccccc
Confidence                                    011258999999999999999887765  678999999999999877665543  2


Q ss_pred             cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECC
Q 006115          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP  505 (660)
Q Consensus       433 ~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-------~g~~~TGDl~~~~~  505 (660)
                      ....+.|.+.++..+.+.| +++.  .++.|+.|||+|+||.++.||++++..+...|.       +|||+|||+|++|+
T Consensus       327 ~~~~~~~~~~~~~~v~~~d-~~~~--~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~  403 (514)
T d1amua_         327 GHSVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS  403 (514)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred             CcccccccceeeeeEeeec-ccce--ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECC
Confidence            2335778889999999998 5554  444568999999999999999999999888872       68999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      +|+|+++||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++.   .++|+|+++++.                
T Consensus       404 ~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~----------------  466 (514)
T d1amua_         404 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI----------------  466 (514)
T ss_dssp             TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC----------------
T ss_pred             CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC----------------
Confidence            9999999999999997 89999999999999999999999999976553   788999887753                


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                        +.+        +|+++++ .+|+.|++|..|+++      +.||+|++|||+|++|++
T Consensus       467 --~~~--------~l~~~~~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         467 --PLE--------QLRQFSS-EELPTYMIPSYFIQL------DKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             --CHH--------HHHHHHH-HHSCGGGSCSEEEEC------SSCCBCTTSSBCGGGSCC
T ss_pred             --CHH--------HHHHHHH-hhCCcccCceEEEEe------CCCCCCCCcChhHHhcCC
Confidence              112        2333343 579999999999987      456999999999999886

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.1e-65  Score=559.31  Aligned_cols=499  Identities=18%  Similarity=0.157  Sum_probs=403.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~  121 (660)
                      .||.++|+++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999875   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhcc----ccccccCccEEEEecCCcHHHHHHHhhCCcee
Q 006115          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP----DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +++|++++|++|..+.+++.++|+.++++++++++.........    .......+...+......            ..
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence            99999999999999999999999999999999987543321111    011111222222221111            01


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhh
Q 006115          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (660)
                      ..+.++    ...........++|+++|+|||||||.||+|++||.++...+......+     ++.++|++++..|+.|
T Consensus       164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            112111    1223344456789999999999999999999999999999999888777     8999999999999999


Q ss_pred             HHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          278 ILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+++..  ....+..|.+++..+. ++..+...+++++++.+..+|..+..+........                    
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  294 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR--------------------  294 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc--------------------
Confidence            999864  3334555777776665 99999999999999999999999888765322211                    


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                               ...++++.+++||+++++...+++.+.++......|+.+|.+.............
T Consensus       295 -------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         295 -------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             -------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             -------------------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                     1114899999999999999999999999999999999999887766655555555


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEe
Q 006115          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       435 ~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      .+++|.|+++....++..+++  ..++.++.|||+++|+.++.||++++..+...+ .+|||+|||++++++||+|++.|
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G  427 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG  427 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCcccCCCCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence            578999987665555552443  455567899999999999999999999988888 78999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006115          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..                 ...   
T Consensus       428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~-----------------~~~---  486 (536)
T d1mdba_         428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP-----------------KAA---  486 (536)
T ss_dssp             EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC-----------------CHH---
T ss_pred             CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCC-----------------CHH---
Confidence            99999996 8999999999999999999999999986644   36899998876431                 112   


Q ss_pred             HHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006115          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~  649 (660)
                           +|+++++++.||.|++|+.|++++      .+|+|++|||+|++|+++|+++|.
T Consensus       487 -----~l~~~l~~~~l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         487 -----ELKAFLRERGLAAYKIPDRVEFVE------SFPQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             -----HHHHHHHHTTCCGGGSCSEEEECS------SCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhcCCCcCcCccEEEEEC------CCCcCCCcCccHHHHHHHHHHHHh
Confidence                 233444445799999999999874      469999999999999999988775

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1e-61  Score=528.60  Aligned_cols=492  Identities=21%  Similarity=0.217  Sum_probs=388.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA  120 (660)
                      ++||.++|+++|+++||++|+++.   ++.    +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999986   432    6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++++++.++++.++++++|++........  .... .....++                     .+
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i---------------------~~  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARII---------------------FL  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEE---------------------EH
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-ccccccc---------------------cc
Confidence            9999999999999999999999999999999999876432111  1111 1111222                     22


Q ss_pred             HHHHhcCc----cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       201 ~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (660)
                      .++.....    ..........++++++++|||||||.||+|.++|.++...+......+   .......+++++.+|+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222211    122333456789999999999999999999999999999888765544   22456778999999999


Q ss_pred             hHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |..+... .+.+...++.+++.+. ++..+...+..++++++..+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8888775 4555666767666665 9999999999999999999999988876543221110                  


Q ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006115          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                               ...++||.+++||++++++...++...++..+.+.||++|++..+..........
T Consensus       269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                     1124899999999999999999999999999999999999988777665544332


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc-CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006115          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       435 ~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g-~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                       ...+.+.+.....+.+ ..+  ..++.|+.|++.+.+ +....+|++++..+.+.|.+|||+|||+|++++||.|+++|
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~--~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G  399 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVD--EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG  399 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTT--CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             -ccccccccceeeeeec-ccC--cccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence             3333444443333333 222  345567889887776 45567889999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006115          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.||+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+..        .        +     
T Consensus       400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~--------~--------~-----  457 (503)
T d3cw9a1         400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET--------L--------S-----  457 (503)
T ss_dssp             ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------C-----
T ss_pred             CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCC--------C--------C-----
Confidence            99999997 7999999999999999999999999997655   37999999876431        0        1     


Q ss_pred             HHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                         .++|++++++.+||.|++|+.|++++      ++|+|++|||+|++|++++
T Consensus       458 ---~~~l~~~~~~~~l~~~~~P~~i~~v~------~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         458 ---ADALDTFCRSSELADFKRPKRYFILD------QLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             ---HHHHHHHHHHSSSCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcCCCCCCCccEEEEEC------CCCcCCCcCccHHHHHHhc
Confidence               12344445457899999999988874      4699999999999999875