Citrus Sinensis ID: 006267

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
cccccccccccEEEEEEEEEEEEEcccccccccEEEEEEEEEcEEccEEEcHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEEEHHHHHHHcccccccccccEEEEcccccEEEEEEEEccccccccEEEcccHHHHHccccccccEEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHccccccccccccc
ccccccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHccccccEHHHHEHEEHHccccHHHcccHHHHHccccccccccccccccEEEEEEEEHHHEEEEcccccEEHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHccccccccccHHHHHHccccccHccHHHHHEEccHccccccccEEEcHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEccccEEEEEcccccccEEEEccccHHHccccccEEcccccccccccccHHHccccccccccHHHHHHHHHHHHHHHcc
mkhkthpcnpvalSFISVSVFIFNLDltclscnyCYLVLQILNIRCFVFCAAILTLILCVYRSIyeegrfcdtfhvnasgwrccescgkrvhcgcitsvhaftlldaggiecmtcarknvlvaptpswppslfyqtpfperikdlsvknwtqlagsgpvpwrqapslfnssipqpelrprlpyevdlsagidrinaserlsvpslekrKLEDFSERLMngglksgsrdipenanagsncdmqpssclnkpqqsstlkddsstphfglavsyaspsetnsqigvsgshlrpvvqpplvkqfhgnlpngadslgetqvrngrprvdargrsqllprywprftdqdlqqisgdsnsvITPLFEKMLsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvgekiqwvqcedcskwrkvpanarlpskwtcsgnlwdperynqhlviclnpdifiylprlriFFFFG
mkhkthpcnpvALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFnssipqpelrPRLPYEVDLSAGIdrinaserlsvpslekrkledFSERLmngglksgsrdiPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPngadslgetqvrngrprvdargrsqllprywPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAyfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWrkvpanarlpskwTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
*******CNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWR************************************************************************************************************************************************************************LLPRYWPRFTDQDLQQI****NSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFF*
********NPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCAR***********************************************************************************************************************************************************************************************************************************************PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFR**********************************WSKVDKSGYIATEAL*****************************************L****PNNVPSVVVIEGYEFEEYEDAPILGKPTIFA*************EDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCD*********************TPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
*****HPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNW*******PVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVP******LEDFSERLMNGGLKSGSRDIPEN**************************************************************************************************LLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS****************************************************************SKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERYNQHLVICLNPDIFIYLPRLRIFFFFG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query653 2.2.26 [Sep-21-2011]
Q0D5G4 955 B3 domain-containing prot yes no 0.849 0.581 0.482 1e-151
Q8W4L5 790 B3 domain-containing tran yes no 0.774 0.640 0.424 1e-108
Q5CCK4 780 B3 domain-containing tran no no 0.490 0.410 0.581 1e-107
O65420 713 B3 domain-containing tran no no 0.745 0.683 0.447 1e-107
Q6Z3U3 949 B3 domain-containing prot yes no 0.465 0.320 0.549 1e-94
Q7XKC4438 Putative B3 domain-contai no no 0.163 0.244 0.444 1e-18
Q7XKC5433 B3 domain-containing prot no no 0.156 0.235 0.456 4e-18
Q9LW31313 B3 domain-containing tran no no 0.166 0.348 0.409 5e-18
Q6Z1Z3362 B3 domain-containing prot no no 0.156 0.281 0.407 1e-15
A4LBC0402 B3 domain-containing prot no no 0.165 0.268 0.381 2e-15
>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2 Back     alignment and function desciption
 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 307/636 (48%), Positives = 389/636 (61%), Gaps = 81/636 (12%)

Query: 65  YEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARK-NVLVA 123
           +E G FC+TFH+  +GWR CESCGKR+HCGCI SVHAF  LDAGG+EC+ CARK +  +A
Sbjct: 119 FEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMA 178

Query: 124 PTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPY 183
           P+  W  S+       +R KD  VK+W   AG     WRQ  ++++ S  Q +L+ RL +
Sbjct: 179 PSQIWSSSMHMAQNVADR-KDNFVKSWRPPAGQFSSQWRQN-NMWSMSTMQSDLQQRLAF 236

Query: 184 EVDLSAGIDRINASERLSVPSLEKR--KLEDFS-----------ERLMNGGLKSGSRD-- 228
           E D  +G +++    R  + + EK+   + D S           ER  NG  +  + D  
Sbjct: 237 EFDRPSGSEKLLPG-RTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPT 295

Query: 229 ---------------IPENANAGSN-------------CDMQPSSCLNKPQQSSTLKDDS 260
                             + +AG N             C    ++        S LKDD 
Sbjct: 296 YAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDP 355

Query: 261 STPHFGLAVSYASPSETNSQIGVSGSHLRP-VVQPPLVKQFHGNLPNGADSLGETQVRNG 319
           S    GL+ +++S +     I +  +  +  +    L KQF+ +  +  D+  + Q+RNG
Sbjct: 356 SAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSH--SVIDNDFQAQLRNG 413

Query: 320 RPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKK 379
           RPR+DA+ RSQLLPRYWPR TDQ+LQ +SGDSNSVITPLFEKMLSASDAGRIGRLVLPKK
Sbjct: 414 RPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKK 473

Query: 380 CAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGD 439
           CAEAYFP ISQ EGLPLKVQD+ GKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD
Sbjct: 474 CAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGD 533

Query: 440 IVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP---ANGHAELADPS------ 490
            VTFSR++PEGKLVMGFRKA++ SA +QD     A   +P   AN    + D S      
Sbjct: 534 TVTFSRIDPEGKLVMGFRKATNLSA-EQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVP 592

Query: 491 ------------------SWSKVDKSGYIATEALGAKSS--ISRKRKNTTLGSKSKRLKI 530
                             +  K+DK      E  G  SS  +  KRK T++G K KR  +
Sbjct: 593 RPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHM 652

Query: 531 ENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEK 590
           ++E+ +ELK+TWEEAQ LLRPPP   PS+VV++G+EFEEYE+ PILG+ T F TD  GE 
Sbjct: 653 DSEESMELKITWEEAQELLRPPP-KAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGEN 711

Query: 591 IQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPER 626
            QW QCEDCSKWRK+P +A LPSKWTCS N WD ER
Sbjct: 712 HQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSER 747

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1 Back     alignment and function description
>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1 Back     alignment and function description
>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3 Back     alignment and function description
>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1 Back     alignment and function description
>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2 Back     alignment and function description
>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1 Back     alignment and function description
>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1 Back     alignment and function description
>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
449433878 896 PREDICTED: B3 domain-containing protein 0.854 0.622 0.736 0.0
449479362 899 PREDICTED: LOW QUALITY PROTEIN: B3 domai 0.859 0.624 0.730 0.0
224076806 918 predicted protein [Populus trichocarpa] 0.839 0.596 0.716 0.0
302144200601 unnamed protein product [Vitis vinifera] 0.849 0.923 0.724 0.0
255560846 854 transcription factor, putative [Ricinus 0.808 0.618 0.716 0.0
359495507564 PREDICTED: B3 domain-containing protein 0.799 0.925 0.709 0.0
357446313 888 B3 domain-containing transcription repre 0.849 0.625 0.689 0.0
356555034 854 PREDICTED: B3 domain-containing protein 0.816 0.624 0.661 0.0
356549413 855 PREDICTED: B3 domain-containing protein 0.820 0.626 0.653 0.0
356549411 889 PREDICTED: B3 domain-containing protein 0.859 0.631 0.652 0.0
>gi|449433878|ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/565 (73%), Positives = 478/565 (84%), Gaps = 7/565 (1%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S YEEGRFC+TFH+NASGWRCCESCGKRVHCGCI S HAFTLLD GGIECMTCARKNV++
Sbjct: 53  SAYEEGRFCETFHLNASGWRCCESCGKRVHCGCIVSAHAFTLLDPGGIECMTCARKNVIL 112

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
              P+WPPSL + +  P+R+K+LSVKNW+QLAGSGPVPWRQAPS+FNSS+P  EL  R P
Sbjct: 113 PLNPAWPPSLLFHSALPDRLKELSVKNWSQLAGSGPVPWRQAPSMFNSSLPSGELHHRAP 172

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLK-SGSRDIPENANAGSNCDM 241
           YEVD+SA ++++N SERL V SLEKRK EDFSER +NG LK  GS  +      G  CD 
Sbjct: 173 YEVDISAALNKLNTSERLPV-SLEKRKNEDFSERFLNGSLKPCGSVLV---VMRGIKCDD 228

Query: 242 QPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFH 301
           +PSSC N P+QSS +K+DSST  +GL + YA P+E +++  +SG+HLRP     L KQ H
Sbjct: 229 KPSSCSNMPKQSSFVKEDSSTMQYGLNIPYAPPNEPSARGRISGTHLRPTPLSSLPKQIH 288

Query: 302 GNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEK 361
            NL NGADS  ETQ+RNGRPR ++RG++ LLPRYWPRFTDQ+LQQIS DSNSVITPLFEK
Sbjct: 289 TNLQNGADSSNETQLRNGRPRGESRGKNYLLPRYWPRFTDQELQQISVDSNSVITPLFEK 348

Query: 362 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 421
           MLSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMY
Sbjct: 349 MLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMY 408

Query: 422 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 481
           VLEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS  + +DQ+NE NK   G P +
Sbjct: 409 VLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKAS--ATADQENETNKTKNGAPVH 466

Query: 482 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
           G AELADP+SW+KVDKSGYIA E LGAK SISRKRKN+TLGSKSKRL+I+NED+IELK+T
Sbjct: 467 GDAELADPNSWTKVDKSGYIAKEVLGAKPSISRKRKNSTLGSKSKRLRIDNEDMIELKIT 526

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSK 601
           WEEAQGLLRPPPN VP+++VIEG+EFE YE+AP+LGKP+I   DN GE+IQW QCEDC K
Sbjct: 527 WEEAQGLLRPPPNQVPNILVIEGFEFEAYEEAPVLGKPSIIPPDNTGERIQWTQCEDCLK 586

Query: 602 WRKVPANARLPSKWTCSGNLWDPER 626
           WRK+PA+A LPSKWTCS N W+PER
Sbjct: 587 WRKLPASALLPSKWTCSDNSWEPER 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449479362|ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224076806|ref|XP_002305001.1| predicted protein [Populus trichocarpa] gi|222847965|gb|EEE85512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302144200|emb|CBI23327.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255560846|ref|XP_002521436.1| transcription factor, putative [Ricinus communis] gi|223539335|gb|EEF40926.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359495507|ref|XP_002270901.2| PREDICTED: B3 domain-containing protein Os07g0563300-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|357446313|ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi|355482482|gb|AES63685.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356555034|ref|XP_003545844.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max] Back     alignment and taxonomy information
>gi|356549413|ref|XP_003543088.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356549411|ref|XP_003543087.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
TAIR|locus:2116592 780 HSL1 "HSI2-like 1" [Arabidopsi 0.529 0.443 0.548 4.7e-116
TAIR|locus:2064417 790 HSI2 "high-level expression of 0.675 0.558 0.436 4.5e-107
TAIR|locus:2088439313 FUS3 "FUSCA 3" [Arabidopsis th 0.169 0.354 0.412 5.3e-17
TAIR|locus:2039165244 ABS2 "ABNORMAL SHOOT 2" [Arabi 0.188 0.504 0.382 1.9e-15
UNIPROTKB|Q6Z1Z3362 IDEF1 "B3 domain-containing pr 0.289 0.522 0.326 2.3e-15
UNIPROTKB|Q7XKC5433 LOC_Os04g58000 "B3 domain-cont 0.156 0.235 0.456 3e-15
UNIPROTKB|A4LBC0402 LFL1 "B3 domain-containing pro 0.330 0.537 0.293 1.8e-14
TAIR|locus:2093166720 ABI3 "AT3G24650" [Arabidopsis 0.237 0.215 0.331 1.1e-13
TAIR|locus:2032170363 LEC2 "LEAFY COTYLEDON 2" [Arab 0.275 0.495 0.308 1.7e-13
UNIPROTKB|P37398727 VP1 "B3 domain-containing prot 0.203 0.182 0.357 9.1e-13
TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 976 (348.6 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
 Identities = 198/361 (54%), Positives = 252/361 (69%)

Query:   275 SETNS--QIGVSGSHL--RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQ 330
             S+TNS  Q+      L  +P    P+     G  P+G  SL  +Q+   RP  + RG++Q
Sbjct:   200 SKTNSIFQLAPRSRQLLPKPANSAPIAA---GMEPSG--SL-VSQIHVARPPPEGRGKTQ 253

Query:   331 LLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP 386
             LLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP
Sbjct:   254 LLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFP 313

Query:   387 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 446
             PIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR 
Sbjct:   314 PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRT 373

Query:   447 EPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEAL 506
             EPEGKLVMG+RKA++++A+     +++    + +N         +WSK++KS  +A + L
Sbjct:   374 EPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNL 433

Query:   507 GAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGY 565
               +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ LLR           +E  
Sbjct:   434 FLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQ 493

Query:   566 EFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPE 625
             +FEEY++ P+ GK T+F +   GE+ QWVQC+ C KWR++P +  LP KW+CS NL DP 
Sbjct:   494 DFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPG 553

Query:   626 R 626
             R
Sbjct:   554 R 554
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010030 "positive regulation of seed germination" evidence=IGI
GO:2000034 "regulation of seed maturation" evidence=IGI
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 5e-21
pfam0236297 pfam02362, B3, B3 DNA binding domain 4e-19
smart0101996 smart01019, B3, B3 DNA binding domain 2e-16
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 6e-09
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 5e-08
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information 
 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 357 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 416
           PLF K+L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458
             RM +  G    ++   L+ GD + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 653
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.67
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.58
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 98.03
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 97.62
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information 
Probab=99.67  E-value=3.1e-16  Score=134.15  Aligned_cols=98  Identities=24%  Similarity=0.420  Sum_probs=70.2

Q ss_pred             EEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEeCCCCCcceec-cCchhhhhccCCCC
Q 006267          359 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQA  437 (653)
Q Consensus       359 F~KvLT~SDVgklgRLVIPK~~AEa~FPpL~~~~G~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL-~GWs~FVrsK~Lqa  437 (653)
                      |.|+|+++|+.+..+|+||++.+++|.  +....++.|.++|..|+.|.+++.++  +.++.|++ .||..||++++|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~--~~~~~~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYR--KNSGRYYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEE--CCTTEEEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEE--ccCCeEEECCCHHHHHHHcCCCC
Confidence            899999999998889999999999982  12235789999999999999999987  33333556 59999999999999


Q ss_pred             CCEEEEEEec-CCCeEEEEEEeCC
Q 006267          438 GDIVTFSRLE-PEGKLVMGFRKAS  460 (653)
Q Consensus       438 GDtVvF~R~e-~~GkL~IGVRRa~  460 (653)
                      ||.|+|+... ...++.|.+.|++
T Consensus        77 GD~~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   77 GDVCVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             T-EEEEEE-SSSCE-EEEEEE---
T ss_pred             CCEEEEEEecCCCceEEEEEEECc
Confidence            9999999975 3456799998863

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 7e-14
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWP 414
           LFEK ++ SD G++ RLV+PK  AE +FP P S    +G+ L  +D  GK W F++ +W 
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71
Query: 415 NNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQDNEAN 472
            N+S+ YVL +G +  ++   L+AGD+V+FSR   +  +L +G++   S S SD D    
Sbjct: 72  -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLDASGP 127
Query: 473 KAG 475
            +G
Sbjct: 128 SSG 130

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 1e-27
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 2e-10
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  107 bits (267), Expect = 1e-27
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGK 404
           SG S      LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 405 EWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA 462
            W F++ +W  N+S+ YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 463 SAS 465
              
Sbjct: 121 DLD 123
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.95
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 99.69
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.65
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.57
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.41
4gut_A 776 Lysine-specific histone demethylase 1B; histone de 93.86
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 87.62
1we9_A64 PHD finger family protein; structural genomics, PH 83.17
1wee_A72 PHD finger family protein; structural genomics, PH 81.68
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.95  E-value=2.4e-27  Score=216.09  Aligned_cols=118  Identities=39%  Similarity=0.730  Sum_probs=100.7

Q ss_pred             cCCCCCcccceEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEeCCCCCcceecc
Q 006267          348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE  424 (653)
Q Consensus       348 sgd~ns~~~~LF~KvLT~SDVgklgRLVIPK~~AEa~FPpL~~---~~G~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL~  424 (653)
                      ++..+.+..++|.|+||+|||++.+||+||+++|++|||.++.   .+++.|.++|.+|++|+|+|+||  +.+++|+|+
T Consensus         3 ~~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt   80 (130)
T 1wid_A            3 SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLT   80 (130)
T ss_dssp             -----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEE
T ss_pred             CCCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEc
Confidence            3556667789999999999999889999999999999999874   57899999999999999999999  667889985


Q ss_pred             -CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCccch
Q 006267          425 -GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQD  468 (653)
Q Consensus       425 -GWs~FVrsK~LqaGDtVvF~R~e-~~GkL~IGVRRa~~~~~s~q~  468 (653)
                       ||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|.
T Consensus        81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~  125 (130)
T 1wid_A           81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDAS  125 (130)
T ss_dssp             SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC-
T ss_pred             CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-cccc
Confidence             99999999999999999999987 3468999999998654 3443
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 653
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 2e-29
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-22
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 8e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 2e-29
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRF 412
             LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +
Sbjct: 4   EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 63

Query: 413 WPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 463
           W ++ S +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 64  WNSSQSYVL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.92
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.61
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.35
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1.8e-25  Score=196.34  Aligned_cols=106  Identities=40%  Similarity=0.772  Sum_probs=93.8

Q ss_pred             ccceEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEeCCCCCcceec-cCchhhh
Q 006267          355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCI  430 (653)
Q Consensus       355 ~~~LF~KvLT~SDVgklgRLVIPK~~AEa~FPpL~~---~~G~~L~v~D~~Gk~W~Frfs~w~Nn~SR~YVL-~GWs~FV  430 (653)
                      ..++|+|+||+|||++.+||+||+++|++|||+++.   .+++.|.+.|.+|++|+|+|++|  ++++.|++ .||..||
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~--~~~~~~~l~~GW~~Fv   80 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTKGWSRFV   80 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEESSHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEecCHHHHH
Confidence            458999999999999889999999999999999875   46899999999999999999999  33444555 6999999


Q ss_pred             hccCCCCCCEEEEEEec-CCCeEEEEEEeCCCC
Q 006267          431 QNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA  462 (653)
Q Consensus       431 rsK~LqaGDtVvF~R~e-~~GkL~IGVRRa~~~  462 (653)
                      ++++|++||+|+|++.+ .+|+|+|++||+...
T Consensus        81 ~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          81 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             HHcCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            99999999999999986 457999999998754
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure