Citrus Sinensis ID: 006278

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650--
MLFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSGRAKKLA
ccHHHHHHHccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccHHHHHHccHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHcccEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccccEEEccccccHHHHHccccccccEEEEEEEccEEEEEEEEccccccccEEEEccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHcHHHHHHHHEEEEcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccHHHHHHcccEEEEcccccccccccHEEEEEccccccccccccccccccccccccccccccEEEHcccccccccccccccEcccccccccccccccccccccccHHHHccccccccccccccccccccccccHEHHcccEEEEEEEcccccccEEEEccccccccEEEEEccEEEcHHHHHHcccEEEcccccEEEEccccEEEEccccccEEEEEEcccccccEEEEEEEccccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccHHcc
MLFCSIfaqlspllfslnlqvfdcrlhgcsqdlvfpaekqplwyhldegnvpcgphcyrsvlksernatacsplngdikekfisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdsevgqrqdtafthhsspsksklvgkvgickrkSKRVAERALVCKQKKQKkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHvrvplgssqeivsnppaistndslrkdEFVAENMckqelsdeKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTcsenklfcqaGDAATSLLEgyskfdfngttgnnevRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRIterkdqpcrqynpcgcqtacgkqcpcllngtccekycgcpkscknrfrgchcaksqcrsrqcpcfaadrecdpdvcrncwiscgdgslgvpdqkgdnyeCRNMKLLLKQQQRVLlgrsdvsgwgAFLKnsvgkheylgeYTGELISHreadkrgkiydrenssflfnlndqfvldayrkgdklkfanhspdpncyAKVIMVAGDHRVGIFAKERISAGEELfydyryepdrapawarkpeasgskkeeggpssgrakkla
MLFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdseVGQRQDTafthhsspsksklvgkvgickrkskrvaeralvckqkkqkkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHVRVPLgssqeivsnppaistndslRKDEFVAENMCkqelsdekswKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSkfdfngttgnnevrrrsrylrrrgrvrrlkytwksaayhsirkriterkdqpcRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLkfanhspdpnCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPawarkpeasgskkeeggpssgrakkla
MLFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANssshkhakssssGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVrrrsrylrrrgrvrrLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMklllkqqqRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARkpeasgskkeeggpssgRAKKLA
*LFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS**************************************************************************************KVGICK********RALVC*****************************************************************************************************************SWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFN************************KYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE********************************
*LFCSI*AQLSPLLFSLNLQVFDCRLHGCSQDLV******************CGPHCY**********************************************************************************************************************************GV**********************************************************************************************KTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS*****************************************************************TERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARK**********************
MLFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISS***************************************************************VGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDM***********************************IQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGC***********CPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPA**************************
MLFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS*************************************************************************************************************************************************************************************************************************KSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENK********************************RSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARK**********************
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SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLFCSIFAQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSGRAKKLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query652 2.2.26 [Sep-21-2011]
P93831902 Histone-lysine N-methyltr yes no 0.958 0.692 0.687 0.0
Q8S4P6931 Histone-lysine N-methyltr N/A no 0.949 0.664 0.656 0.0
Q8S4P4895 Histone-lysine N-methyltr N/A no 0.904 0.659 0.509 1e-157
Q9ZSM8856 Histone-lysine N-methyltr no no 0.552 0.420 0.689 1e-148
Q8S4P5894 Histone-lysine N-methyltr N/A no 0.605 0.441 0.638 1e-143
O65312689 Histone-lysine N-methyltr no no 0.504 0.477 0.505 3e-99
A7E2Z2747 Histone-lysine N-methyltr yes no 0.455 0.397 0.434 4e-67
Q92800747 Histone-lysine N-methyltr yes no 0.455 0.397 0.428 6e-67
P70351747 Histone-lysine N-methyltr yes no 0.455 0.397 0.426 1e-66
Q5RDS6747 Histone-lysine N-methyltr yes no 0.455 0.397 0.428 2e-66
>sp|P93831|CLF_ARATH Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2 Back     alignment and function desciption
 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/643 (68%), Positives = 494/643 (76%), Gaps = 18/643 (2%)

Query: 14  LFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSP 73
           LF     VFDCRLHGCSQDL+FPAEK   W    + N+ CG +CY+++LKS R      P
Sbjct: 274 LFCRRCLVFDCRLHGCSQDLIFPAEKPAPWCPPVDENLTCGANCYKTLLKSGR-----FP 328

Query: 74  LNGDIKEKFISSSDGAGAQTSSRK---KFSGPARRVKSHQSESASSNAKNLSESSDSEVG 130
             G I+ K  +SSDGAG +T+  K   K +G  R+ K+  SESASSN K   E+SDSE G
Sbjct: 329 GYGTIEGKTGTSSDGAGTKTTPTKFSSKLNG--RKPKTFPSESASSNEKCALETSDSENG 386

Query: 131 QRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGV 190
            +QDT     SS  K K  G+    KR   RVAER     QK+QKK  A D DS+ASG  
Sbjct: 387 LQQDTNSDKVSSSPKVKGSGRRVGRKRNKNRVAERVPRKTQKRQKKTEASDSDSIASGSC 446

Query: 191 LPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEI 250
            PSD K      K+NEDA SSS KH KS +SGK+RK     + S N +   VP+  S E+
Sbjct: 447 SPSDAK-----HKDNEDATSSSQKHVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNEV 501

Query: 251 VSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNL 310
            S   A  +++SLRK+EF+ E + +  L+  K W+ +EK LFDKGVEIFG NSCLIARNL
Sbjct: 502 ASELDAPGSDESLRKEEFMGETVSRGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNL 561

Query: 311 LNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRR 370
           L+G K+CWEVFQYMTCSENK     GD      +G SKFD NG   NN+VRRRSR+LRRR
Sbjct: 562 LSGFKSCWEVFQYMTCSENKASFFGGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRR 619

Query: 371 GRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCG 430
           G+VRRLKYTWKSAAYHSIRKRITE+KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYCG
Sbjct: 620 GKVRRLKYTWKSAAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCG 679

Query: 431 CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNY 490
           CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCW+  GDGSLGVP Q+GDNY
Sbjct: 680 CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDNY 739

Query: 491 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD 550
           ECRNMKLLLKQQQRVLLG SDVSGWGAFLKNSV KHEYLGEYTGELISH+EADKRGKIYD
Sbjct: 740 ECRNMKLLLKQQQRVLLGISDVSGWGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYD 799

Query: 551 RENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAG 610
           REN SFLFNLNDQFVLDAYRKGDKLKFANHSP+PNCYAKVIMVAGDHRVGIFAKERI AG
Sbjct: 800 RENCSFLFNLNDQFVLDAYRKGDKLKFANHSPEPNCYAKVIMVAGDHRVGIFAKERILAG 859

Query: 611 EELFYDYRYEPDRAPAWARKPEASGSKKEEG-GPSSGRAKKLA 652
           EELFYDYRYEPDRAPAWA+KPEA GSKK+E   PS GR KKLA
Sbjct: 860 EELFYDYRYEPDRAPAWAKKPEAPGSKKDENVTPSVGRPKKLA 902
Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. Required to regulate floral development by repressing the AGAMOUS homeotic gene in leaves, influorescence stems and flowers. Regulates the antero-posterior organization of the endosperm, as well as the division and elongation rates of leaf cells. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea mays GN=EZ3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4P5|EZ2_MAIZE Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 PE=2 SV=1 Back     alignment and function description
>sp|O65312|MEDEA_ARATH Histone-lysine N-methyltransferase MEDEA OS=Arabidopsis thaliana GN=MEA PE=1 SV=1 Back     alignment and function description
>sp|A7E2Z2|EZH1_BOVIN Histone-lysine N-methyltransferase EZH1 OS=Bos taurus GN=EZH1 PE=2 SV=2 Back     alignment and function description
>sp|Q92800|EZH1_HUMAN Histone-lysine N-methyltransferase EZH1 OS=Homo sapiens GN=EZH1 PE=1 SV=2 Back     alignment and function description
>sp|P70351|EZH1_MOUSE Histone-lysine N-methyltransferase EZH1 OS=Mus musculus GN=Ezh1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RDS6|EZH1_PONAB Histone-lysine N-methyltransferase EZH1 OS=Pongo abelii GN=EZH1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query652
225438762 950 PREDICTED: histone-lysine N-methyltransf 0.975 0.669 0.781 0.0
296082393 934 unnamed protein product [Vitis vinifera] 0.975 0.680 0.781 0.0
224094296 892 SET domain protein [Populus trichocarpa] 0.953 0.697 0.775 0.0
224084364 917 SET domain protein [Populus trichocarpa] 0.953 0.678 0.767 0.0
449463949 927 PREDICTED: LOW QUALITY PROTEIN: histone- 0.975 0.686 0.755 0.0
374306302 897 CLF-like protein [Aquilegia coerulea] 0.963 0.700 0.694 0.0
356540672 869 PREDICTED: histone-lysine N-methyltransf 0.881 0.661 0.707 0.0
357482819 870 Histone-lysine N-methyltransferase CLF [ 0.883 0.662 0.709 0.0
15227824 902 histone-lysine N-methyltransferase CLF [ 0.958 0.692 0.687 0.0
297821599 900 hypothetical protein ARALYDRAFT_481208 [ 0.957 0.693 0.693 0.0
>gi|225438762|ref|XP_002278164.1| PREDICTED: histone-lysine N-methyltransferase CLF-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/642 (78%), Positives = 547/642 (85%), Gaps = 6/642 (0%)

Query: 14  LFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSP 73
           LF     VFDCRLHGCSQDLV PAEKQ  W HLDE N+PCG HCYR  +KSE      SP
Sbjct: 312 LFCRRCLVFDCRLHGCSQDLVSPAEKQLPWNHLDEDNIPCGAHCYRLAVKSESIGMVSSP 371

Query: 74  LNGDIKEKFISSSDGAGAQTSSRKKFSGPA--RRVKSHQSESASSNAKNLSESSDSEVGQ 131
           +  D ++K   SSDGAG   SSRK   GP+  RR KS QSESASSN KN+SESSDSE+  
Sbjct: 372 VCADFEDKTAPSSDGAGPHLSSRKN-CGPSSKRRAKSCQSESASSNGKNISESSDSEIRP 430

Query: 132 RQDTAFTHHSS-PSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGV 190
           +QDT  THHSS P K++LVGK  I KR SKRVAER LVC +K+QK M A D DS+ SG +
Sbjct: 431 KQDTTSTHHSSSPPKTRLVGKCAIRKRNSKRVAERVLVCMRKRQK-MVASDSDSILSGRL 489

Query: 191 LPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEI 250
            P DMKLRS SRKENEDA+SSS K  K S +G++R+K   +QDS  L+   VP G   E+
Sbjct: 490 WPRDMKLRSNSRKENEDASSSSLKKVKPSITGRSRRKCSPVQDSNKLVEGEVPEGQMNEM 549

Query: 251 VSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNL 310
           +++PPA S++D+LRK+EFV E+MCKQE SD+KSWK IEKG F+KGVEIFGRNSCLIARNL
Sbjct: 550 INDPPASSSDDTLRKEEFVDESMCKQERSDDKSWKAIEKGFFEKGVEIFGRNSCLIARNL 609

Query: 311 LNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRR 370
           LNG+KTC EVFQ+M CSENK F +AGD + S++EGYSK DFN T GN EVRRRSR+LRRR
Sbjct: 610 LNGMKTCLEVFQFMNCSENKPFFRAGDGSNSMVEGYSKVDFNETMGN-EVRRRSRFLRRR 668

Query: 371 GRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCG 430
           GRVRRLKYTWKSA YHSIRKRI+ERKDQPCRQYNPCGCQ+ACGKQC CLLNGTCCEKYCG
Sbjct: 669 GRVRRLKYTWKSAGYHSIRKRISERKDQPCRQYNPCGCQSACGKQCACLLNGTCCEKYCG 728

Query: 431 CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNY 490
           CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDG+LGVP Q+GDNY
Sbjct: 729 CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGTLGVPSQRGDNY 788

Query: 491 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD 550
           ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD
Sbjct: 789 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD 848

Query: 551 RENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAG 610
           RENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAG
Sbjct: 849 RENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAG 908

Query: 611 EELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSGRAKKLA 652
           EELFYDYRYEPDRAPAWARKPEASG KKE+  PSSGRAKKLA
Sbjct: 909 EELFYDYRYEPDRAPAWARKPEASGVKKEDVAPSSGRAKKLA 950

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082393|emb|CBI21398.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224094296|ref|XP_002310129.1| SET domain protein [Populus trichocarpa] gi|222853032|gb|EEE90579.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224084364|ref|XP_002307273.1| SET domain protein [Populus trichocarpa] gi|222856722|gb|EEE94269.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463949|ref|XP_004149692.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus] gi|449508283|ref|XP_004163272.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|374306302|gb|AEZ06400.1| CLF-like protein [Aquilegia coerulea] Back     alignment and taxonomy information
>gi|356540672|ref|XP_003538810.1| PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] Back     alignment and taxonomy information
>gi|357482819|ref|XP_003611696.1| Histone-lysine N-methyltransferase CLF [Medicago truncatula] gi|355513031|gb|AES94654.1| Histone-lysine N-methyltransferase CLF [Medicago truncatula] Back     alignment and taxonomy information
>gi|15227824|ref|NP_179919.1| histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] gi|30912630|sp|P93831.2|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN GROUP 1; AltName: Full=Protein photoperiod insensitive flowering gi|3242729|gb|AAC23781.1| curly leaf protein (polycomb-group) [Arabidopsis thaliana] gi|330252355|gb|AEC07449.1| histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297821599|ref|XP_002878682.1| hypothetical protein ARALYDRAFT_481208 [Arabidopsis lyrata subsp. lyrata] gi|297324521|gb|EFH54941.1| hypothetical protein ARALYDRAFT_481208 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query652
TAIR|locus:2005501902 CLF "CURLY LEAF" [Arabidopsis 0.923 0.667 0.642 5.8e-208
TAIR|locus:2132178856 SWN "SWINGER" [Arabidopsis tha 0.523 0.398 0.673 4.4e-141
TAIR|locus:2196110689 MEA "MEDEA" [Arabidopsis thali 0.449 0.425 0.491 3.1e-83
UNIPROTKB|E1BD02751 EZH2 "Uncharacterized protein" 0.319 0.276 0.532 6.9e-74
UNIPROTKB|F1NBM3749 EZH1 "Uncharacterized protein" 0.338 0.295 0.534 1.4e-73
MGI|MGI:1097695747 Ezh1 "enhancer of zeste homolo 0.338 0.295 0.525 3.7e-73
UNIPROTKB|Q28D84748 ezh2 "Histone-lysine N-methylt 0.319 0.278 0.532 4.8e-73
UNIPROTKB|Q92800747 EZH1 "Histone-lysine N-methylt 0.338 0.295 0.525 6.1e-73
RGD|1305028749 Ezh1 "enhancer of zeste homolo 0.338 0.295 0.525 6.1e-73
UNIPROTKB|E1C0W5761 EZH2 "Uncharacterized protein" 0.319 0.273 0.532 6.1e-73
TAIR|locus:2005501 CLF "CURLY LEAF" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2011 (713.0 bits), Expect = 5.8e-208, P = 5.8e-208
 Identities = 398/619 (64%), Positives = 445/619 (71%)

Query:    14 LFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSP 73
             LF     VFDCRLHGCSQDL+FPAEK   W    + N+ CG +CY+++LKS R      P
Sbjct:   274 LFCRRCLVFDCRLHGCSQDLIFPAEKPAPWCPPVDENLTCGANCYKTLLKSGR-----FP 328

Query:    74 LNGDIKEKFISSSDGAGAQTSSRKKFSGP--ARRVKSHQSESASSNAKNLSESSDSEVGQ 131
               G I+ K  +SSDGAG +T+  K FS     R+ K+  SESASSN K   E+SDSE G 
Sbjct:   329 GYGTIEGKTGTSSDGAGTKTTPTK-FSSKLNGRKPKTFPSESASSNEKCALETSDSENGL 387

Query:   132 RQDTAFTHHSSPSKSKLVGK-VGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGV 190
             +QDT     SS  K K  G+ VG  KR   RVAER     QK+QKK  A D DS+ASG  
Sbjct:   388 QQDTNSDKVSSSPKVKGSGRRVGR-KRNKNRVAERVPRKTQKRQKKTEASDSDSIASGSC 446

Query:   191 LPSDMKLRSTSRKENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQEI 250
              PSD K      K+NEDA             GK+RK     + S N +   VP+  S E+
Sbjct:   447 SPSDAK-----HKDNEDATSSSQKHVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNEV 501

Query:   251 VSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNL 310
              S   A  +++SLRK+EF+ E + +  L+  K W+ +EK LFDKGVEIFG NSCLIARNL
Sbjct:   502 ASELDAPGSDESLRKEEFMGETVSRGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNL 561

Query:   311 LNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVXXXXXXXXXX 370
             L+G K+CWEVFQYMTCSENK     GD      +G SKFD NG   NN+V          
Sbjct:   562 LSGFKSCWEVFQYMTCSENKASFFGGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRR 619

Query:   371 XXXXXLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCG 430
                  LKYTWKSAAYHSIRKRITE+KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYCG
Sbjct:   620 GKVRRLKYTWKSAAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCG 679

Query:   431 CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNY 490
             CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCW+  GDGSLGVP Q+GDNY
Sbjct:   680 CPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDNY 739

Query:   491 ECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD 550
             ECRNM        RVLLG SDVSGWGAFLKNSV KHEYLGEYTGELISH+EADKRGKIYD
Sbjct:   740 ECRNMKLLLKQQQRVLLGISDVSGWGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYD 799

Query:   551 RENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAG 610
             REN SFLFNLNDQFVLDAYRKGDKLKFANHSP+PNCYAKVIMVAGDHRVGIFAKERI AG
Sbjct:   800 RENCSFLFNLNDQFVLDAYRKGDKLKFANHSPEPNCYAKVIMVAGDHRVGIFAKERILAG 859

Query:   611 EELFYDYRYEPDRAPAWAR 629
             EELFYDYRYEPDRAPAWA+
Sbjct:   860 EELFYDYRYEPDRAPAWAK 878
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP
GO:0016571 "histone methylation" evidence=RCA;IMP
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0045857 "negative regulation of molecular function, epigenetic" evidence=IMP
GO:0003727 "single-stranded RNA binding" evidence=IDA
GO:0006306 "DNA methylation" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2132178 SWN "SWINGER" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196110 MEA "MEDEA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BD02 EZH2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBM3 EZH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1097695 Ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q28D84 ezh2 "Histone-lysine N-methyltransferase EZH2" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q92800 EZH1 "Histone-lysine N-methyltransferase EZH1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305028 Ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0W5 EZH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93831CLF_ARATH2, ., 1, ., 1, ., 4, 30.68740.95850.6929yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.914
3rd Layer2.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query652
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 4e-36
pfam00856113 pfam00856, SET, SET domain 4e-25
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 1e-13
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  131 bits (331), Expect = 4e-36
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 504 RVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLN 561
           ++ + +S   GWG      + K E++GEY GE+I+  EA++R K YD +   + +LF+++
Sbjct: 2   KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDID 61

Query: 562 DQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE 620
               +DA RKG+  +F NHS +PNC    + V GD R+ IFA   I  GEEL  DY  +
Sbjct: 62  SDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSD 120

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 652
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.97
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.96
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.92
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.9
KOG1085392 consensus Predicted methyltransferase (contains a 99.79
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.72
COG2940480 Proteins containing SET domain [General function p 99.64
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.53
KOG1081463 consensus Transcription factor NSD1 and related SE 99.05
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.77
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.4
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 97.27
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 92.76
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 92.59
smart0057051 AWS associated with SET domains. subdomain of PRES 92.29
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 90.91
smart0057051 AWS associated with SET domains. subdomain of PRES 84.25
KOG1337 472 consensus N-methyltransferase [General function pr 82.71
PF0363842 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do 81.75
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-91  Score=768.87  Aligned_cols=470  Identities=41%  Similarity=0.703  Sum_probs=371.2

Q ss_pred             HHhcchhhhccceeecccccCCCCcccccCCCCCCCCCCCCCCCCcccchhhhhhccccccccCCCCCcccccccccCCC
Q 006278            8 AQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSD   87 (652)
Q Consensus         8 ~~~f~~lfcrrclvfdcrlhgcsq~li~~~ekq~~w~~~~~d~~pcg~~cy~~~~~~~~~~~~~~~~~~~~e~~~~~s~~   87 (652)
                      ++-||||||||||+||||||| ||.++||+++.-.|-++-.+++|||+.||.++.+....+.                +.
T Consensus       268 l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m----------------~~  330 (739)
T KOG1079|consen  268 LHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTM----------------SA  330 (739)
T ss_pred             hcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhh----------------hc
Confidence            456999999999999999999 9999999999999999999999999999999965443200                00


Q ss_pred             CCCCccCCCccCCCCCccccCccCccccccccccCCCCccccccccCCCccccCCCCcccccCccccccccchHHHHHHH
Q 006278           88 GAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERAL  167 (652)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~~~~~sessds~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~  167 (652)
                      +.+ ..                                                       ++..|.             
T Consensus       331 ~~~-~~-------------------------------------------------------~p~~g~-------------  341 (739)
T KOG1079|consen  331 VVS-KC-------------------------------------------------------PPIRGD-------------  341 (739)
T ss_pred             ccc-cC-------------------------------------------------------CCCcch-------------
Confidence            000 00                                                       011111             


Q ss_pred             HHHHhhhhhhhcccccccccCCCCCccccccccccccccccCCcccccCCCCCCccccccchhhhccccccccccCCCCc
Q 006278          168 VCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSS  247 (652)
Q Consensus       168 ~~~~k~q~~~~~~d~~s~~~~~~~~~d~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (652)
                          ++||--.+++.||.              +.+...||....++..+..+..+...-...    ++++    .++...
T Consensus       342 ----~~qk~~~~~~~~s~--------------~~~~~~e~~g~~~d~~v~~~~~~~~~~v~~----~~~~----~~s~~~  395 (739)
T KOG1079|consen  342 ----IRQKLVKASSMDSD--------------DEHVEEEDKGHDDDDGVPRGFGGSVNFVGE----DDTS----THSSTN  395 (739)
T ss_pred             ----hhhhhcccccCCcc--------------hhhccccccCcccccccccccccccccccC----Cccc----cccccc
Confidence                34443333444442              224456666777777666553322221110    1111    111111


Q ss_pred             ccccCCCCCCCCCccchhhhhhhcccccccccCCCCCchhhhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHHhc
Q 006278          248 QEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS  327 (652)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~E~~L~~k~~~ifg~n~C~iA~~Ll~g~KtC~eV~~ym~~~  327 (652)
                      ..+.+  |.-.++                  ....+|+++|+.||++++.+||.|+|+|||+|+  +|||++||+||..+
T Consensus       396 ~~c~~--~~~~~~------------------~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~e  453 (739)
T KOG1079|consen  396 SICQN--PVHGKK------------------DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQKE  453 (739)
T ss_pred             ccccC--cccccC------------------CcccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhcc
Confidence            11111  000000                  125689999999999999999999999999995  59999999999976


Q ss_pred             ccccccccCCccchhcccCCCCCCCCCCCCcchhhhhHHHHhhhchhcccccccCcccchhhhhcccCCCCCCCCCCCCC
Q 006278          328 ENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCG  407 (652)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~rrr~k~~~l~~~wk~~~~~~i~~~i~~~k~~~~~~~~pC~  407 (652)
                      .......         ...  .     ....+.++|++.+|++++.+++.+.|++..+++++            .|+||+
T Consensus       454 ~~~~~~~---------~~~--~-----~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~------------~~qpC~  505 (739)
T KOG1079|consen  454 VLQGLYF---------DGR--F-----RVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVW------------NYQPCD  505 (739)
T ss_pred             hhhceec---------ccc--c-----ccccCcchhhHHHHhhhhHHHhhhcccccCCceee------------ecCccc
Confidence            5332211         111  1     12357778899999999999999999988777543            355555


Q ss_pred             CCCC--CCCCCcccCCCcccCCCCCCCCcccCCCcCcccCCCCccCCCCccccccccCCcccCcCcccccCCCCCCCCCC
Q 006278          408 CQTA--CGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQ  485 (652)
Q Consensus       408 c~~~--C~~~C~C~~~g~~Ce~~C~C~~~C~nRf~GC~C~~~~C~t~~CpC~~~~rECdPd~C~~C~~~Cg~~~~~~p~~  485 (652)
                      |+++  |+.+|+|+.++++||+||+|+++|.|||+||+| ++||++++||||++.|||||++|..||.        .+..
T Consensus       506 hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~~  576 (739)
T KOG1079|consen  506 HPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDHF  576 (739)
T ss_pred             CCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------cccc
Confidence            5544  468999999999999999999999999999999 9999999999999999999999999985        2344


Q ss_pred             CCCcccccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCCcccccCCccEE
Q 006278          486 KGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFV  565 (652)
Q Consensus       486 ~~~~~~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~sYlf~l~~~~v  565 (652)
                      ++..+.|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|+++|+..+.+|+|+|+++++
T Consensus       577 d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dyv  656 (739)
T KOG1079|consen  577 DSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDYV  656 (739)
T ss_pred             ccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccce
Confidence            66778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccccCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCc
Q 006278          566 LDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSS  645 (652)
Q Consensus       566 IDA~~~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~d~~pC~Cgsp~CrG~kk~~~~~~~  645 (652)
                      |||+++||.+||+|||-+|||++.+++|+|+|||+|||+|+|.+||||||||+|+.++++-|-+.+.  +.+|.+....+
T Consensus       657 iDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~--~s~k~e~~~~q  734 (739)
T KOG1079|consen  657 IDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIER--ESYKVELKIFQ  734 (739)
T ss_pred             EeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccccccccCc--cccccchhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999988887  77888877776


Q ss_pred             cchhc
Q 006278          646 GRAKK  650 (652)
Q Consensus       646 ~raKk  650 (652)
                      ..++|
T Consensus       735 ~~~~~  739 (739)
T KOG1079|consen  735 ATQQK  739 (739)
T ss_pred             hhcCC
Confidence            66654

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query652
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 3e-18
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 2e-16
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 5e-16
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 6e-15
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 3e-13
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-12
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 1e-12
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 1e-11
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 1e-11
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 2e-11
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 8e-11
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 3e-08
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 8e-08
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 3e-07
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 3e-07
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 3e-07
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 1e-06
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 1e-06
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 1e-06
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 505 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-FLFNLNDQ 563
           V + RS + G G F K ++   E + EY G +I   + DKR K YD +    ++F ++D 
Sbjct: 54  VGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDS 113
Query: 564 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY 619
            V+DA   G+  +F NHS +PNCY++VI + G   + IFA  +I  GEEL YDY++
Sbjct: 114 EVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKF 169
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query652
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 5e-46
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 8e-43
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 6e-42
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 4e-41
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 9e-41
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 2e-40
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 1e-39
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 2e-36
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 2e-34
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-30
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-29
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 4e-28
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 3e-16
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-14
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 2e-13
3db5_A151 PR domain zinc finger protein 4; methyltransferase 9e-12
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 2e-11
3dal_A196 PR domain zinc finger protein 1; methyltransferase 3e-11
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 4e-10
1n7d_A 699 LDL receptor, low-density lipoprotein receptor; fa 2e-04
3ray_A237 PR domain-containing protein 11; structural genomi 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
 Score =  160 bits (407), Expect = 5e-46
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 447 SQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVL 506
                RQ P +  + E + +V            L +P         R   L    ++ V 
Sbjct: 4   GSHMHRQPPEYNPNDEEEEEVQLKSARRATSMDLPMP--------MRFRHLKKTSKEAVG 55

Query: 507 LGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN-SSFLFNLNDQFV 565
           + RS + G G F K ++   E + EY G +I   + DKR K YD +    ++F ++D  V
Sbjct: 56  VYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEV 115

Query: 566 LDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPD 622
           +DA   G+  +F NHS +PNCY++VI + G   + IFA  +I  GEEL YDY++  +
Sbjct: 116 VDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIE 172
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query652
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.95
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.94
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.94
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.94
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.9
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.84
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.82
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.79
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.78
3ray_A237 PR domain-containing protein 11; structural genomi 99.63
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.59
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.34
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.33
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.17
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.53
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.36
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 95.5
2crg_A70 Metastasis associated protein MTA3; transcription 94.78
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 94.07
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 93.92
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 90.29
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 89.57
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 85.35
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 83.64
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 80.91
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 80.34
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.9e-45  Score=367.62  Aligned_cols=208  Identities=31%  Similarity=0.528  Sum_probs=179.4

Q ss_pred             cccCcccchhhhhcccCCCCC----CCCCCCCCCCCCCCCCCcccCCCcccCCCCCCCCcccCCCcCcccCCCCccCCCC
Q 006278          379 TWKSAAYHSIRKRITERKDQP----CRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC  454 (652)
Q Consensus       379 ~wk~~~~~~i~~~i~~~k~~~----~~~~~pC~c~~~C~~~C~C~~~g~~Ce~~C~C~~~C~nRf~GC~C~~~~C~t~~C  454 (652)
                      ..++|.|.+|+.|+..+..+.    ..+...|+|...             ++..|+|+.+|.||+               
T Consensus        14 ~~~pp~y~~i~~n~~~~~~~~~~~~~~~~~~C~C~~~-------------~~~~C~~~~~C~nr~---------------   65 (232)
T 3ooi_A           14 DKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKAT-------------DENPCGIDSECINRM---------------   65 (232)
T ss_dssp             CCSCCCCEECSSCEECTTCCCCCCCGGGSCCCSCCTT-------------SSSTTCTTSCCHHHH---------------
T ss_pred             CCCCCCceEeeccccccccccccCCcccCCcccccCC-------------CCCCCCCCCCCcCcC---------------
Confidence            457889999999886655432    235566776543             467789998999987               


Q ss_pred             ccccccccCCcccCcCcccccCCCCCCCCCCCCCcccccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecc
Q 006278          455 PCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTG  534 (652)
Q Consensus       455 pC~~~~rECdPd~C~~C~~~Cg~~~~~~p~~~~~~~~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~G  534 (652)
                          +..||+|..|. |+                 ..|+|+.+|++...+|+|++++.+||||||+++|++|+||+||+|
T Consensus        66 ----~~~EC~~~~C~-c~-----------------~~C~Nr~~q~~~~~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~G  123 (232)
T 3ooi_A           66 ----LLYECHPTVCP-AG-----------------GRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVG  123 (232)
T ss_dssp             ----TTBCCCTTTCT-TG-----------------GGCCCCHHHHTCCCCEEEEECSSSSEEEEESSCBCTTCEEEECCE
T ss_pred             ----ceeEeCCCCCC-CC-----------------CCcCCccccCCCCccEEEEEcCCceeEEEECceecCCceeeEeee
Confidence                47888887774 32                 279999999999999999999999999999999999999999999


Q ss_pred             eecCHHHHhhhhcccccc--CCcccccCCccEEEeccccCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCe
Q 006278          535 ELISHREADKRGKIYDRE--NSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEE  612 (652)
Q Consensus       535 EiIs~~Ea~~R~~~yd~~--~~sYlf~l~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEE  612 (652)
                      |||+..++++|...+...  ...|+|.++.+++|||+.+||++|||||||+|||.++.|.+++.++|+|||+|||++|||
T Consensus       124 evi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEE  203 (232)
T 3ooi_A          124 ELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTE  203 (232)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCCCCEEEEETTEEEEEEEEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCB
T ss_pred             eccCHHHHHHHHHHHhhcCCCceeeeecCcceEEeccccccccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCE
Confidence            999999999987655433  457899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCC---CCCCcccCCCCCCCC
Q 006278          613 LFYDYRYEP---DRAPAWARKPEASGS  636 (652)
Q Consensus       613 LTfDYg~~~---d~~pC~Cgsp~CrG~  636 (652)
                      |||||+++.   ..++|+||+++|+|.
T Consensus       204 LT~dY~~~~~~~~~~~C~CGs~~CrG~  230 (232)
T 3ooi_A          204 LTFNYNLECLGNGKTVCKCGAPNCSGF  230 (232)
T ss_dssp             CEECCTTCSTTCTTCBCCCCCTTCCSB
T ss_pred             EEEECCCCcCCCCCcEeECCCCcCcCc
Confidence            999999765   357899999999986
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 652
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 3e-34
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 9e-30
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 3e-28
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 4e-13
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  129 bits (325), Expect = 3e-34
 Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 25/220 (11%)

Query: 417 PCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADR--ECDPDVCRNCWIS 474
           P   +G  C    GC  +  +R   C C             A  R       V   C   
Sbjct: 62  PNFQSGCNCSSLGGCDLNNPSR---CECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSF 118

Query: 475 CGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTG 534
           C               EC N  +   +   + + ++   GWG           ++  Y G
Sbjct: 119 CSCSM-----------ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLG 167

Query: 535 ELISHREADKRGKIYDRENSSFLFNL-----NDQFVLDAYRKGDKLKFANHSPDPNCYAK 589
           E+I+  EA KR K YD +  ++LF+L       ++ +DA   GD  +F NHS  PN    
Sbjct: 168 EVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIY 227

Query: 590 VIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRAP 625
             +        + +  FA + I   EEL +DY    D +P
Sbjct: 228 SAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSP 267
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query652
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.94
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.89
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.12
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 95.31
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 94.13
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 92.59
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 90.22
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 86.11
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=6.4e-40  Score=335.20  Aligned_cols=136  Identities=29%  Similarity=0.452  Sum_probs=127.9

Q ss_pred             cccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCCcccccCC-----ccEE
Q 006278          491 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN-----DQFV  565 (652)
Q Consensus       491 ~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~sYlf~l~-----~~~v  565 (652)
                      .|.|+.+|++...+|+|++|+.+||||||+++|++|+||+||+||||+..|+++|...|+....+|+|.+.     ..++
T Consensus       124 ~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~y~~~~~~~~~~l~~~~~~~~~~  203 (269)
T d1mvha_         124 ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYT  203 (269)
T ss_dssp             TCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSCSSSCEE
T ss_pred             CCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHhHhhcCCcchhheecccccccce
Confidence            69999999999999999999999999999999999999999999999999999999999988888988764     5799


Q ss_pred             EeccccCCccccccCCCCCCcceEEEEEcCe----eEEEEEEccCCCCCCeEEEecCCCCCCCCc
Q 006278          566 LDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRAPA  626 (652)
Q Consensus       566 IDA~~~GN~aRFINHSC~PNc~~~~v~v~G~----~rI~~fA~RDI~aGEELTfDYg~~~d~~pC  626 (652)
                      |||+..||++|||||||+|||.++.|++++.    ++|+|||+|||++|||||||||+..+..|.
T Consensus       204 iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d~~P~  268 (269)
T d1mvha_         204 VDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPV  268 (269)
T ss_dssp             EECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSSSCC
T ss_pred             eeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCCcCCCCC
Confidence            9999999999999999999999999988753    789999999999999999999998887764
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure