Citrus Sinensis ID: 006550

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
MAEGFEPYHVPQQSRRDKLRIVAQNHPSVVCVESSSSAPAPAAGLLPLYDASSLLSSSDLLTAHEFQHQQQQDNKATNPVCVVKEEGVNLMGFVGGASTSSHHNHHPYLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGYVVPSSSTVAAGASGSTSNEVSRSTSSLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNASGIVVDDGDGSDNRRKKSRLISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQIQANRGKDEASTFGSTDRGPYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKATQREEQSANRSSDHLPSSNSLPSENPSTSTQRVQETPSKRSRDEFPDIPVGNEEPPNLSYNSLSNHPHVGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDVIGGQLLHDFVG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccc
ccccccccccccccHccccEEEEcccccEEEEEccccccccHccccccccccHHEccHHHHHHHHHHHHcccccccccccEEEEccccEEEEccccccccccccccccccccccccccccHHHEEEccccccccEcccHHHHHHHHHHccccccccccccEEEccccccEccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHcccccccccccccccccccccccccccccccccHHHHHccc
maegfepyhvpqqsrrdKLRIvaqnhpsvvcvessssapapaagllplydassllsssdllTAHEFQHqqqqdnkatnpvcvVKEEGvnlmgfvggastsshhnhhpyldphstlhnlnpssildinnnnnpflftaphnlqnqlrdfdqsynggegssevvlfkpeplalslsshhttqnnslplelNLQRYgsaiygdhrvtstgyvvpssstvaagasgstsnevsrstsslpfgpftgyaSILKGSRFLKPAQQLLEEFCDVGqgvfaeknytvdsslmdpplvnlnasgivvddgdgsdnrrkKSRLISMLDEVYRRYKQYYQQMQAAVASFEYVaglgnaapfANLALKAMSKHFRSLKNAITDQLQFTNKAQIQanrgkdeastfgstdrgpyghrpvlnsgfierqsqpvwrpqrglpeRAVTVLRAWLFEhflhpyptdtEKLMLAKqtglsrsqvsNWFINARVRLWKPMVEEIHMLETrqgqkatqreeqsanrssdhlpssnslpsenpststqrvqetpskrsrdefpdipvgneeppnlsynslsnhphvgvgvsmaggnsgvSLTLGlyqnngiglsepypisaaqrfglvhetssegfvlsgyeaqsrifgrdviggqllhdfvg
maegfepyhvpqqsrrdKLRIVAQNHPSVVCVESSSSAPAPAAGLLPLYDASSLLSSSDLLTAHEFQHqqqqdnkatNPVCVVKEEGVNLMGFVGGASTSSHHNHHPYLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGYVVPSSSTVAAGasgstsnevsrstsslpfgPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNASgivvddgdgsdnrrkksrlISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQIqanrgkdeastfgstdrgpyghRPVLNSGfierqsqpvwrpqrglPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQtglsrsqvsnwFINARVRLWKPMVEEIHMLEtrqgqkatqrEEQSanrssdhlpssnslpsenpststqrvqetpskrsrdefpdiPVGNEEPPNLSYNSLSNHPHVGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDVIGGQLLHDFVG
MAEGFEPYHVPQQSRRDKLRIVAQNHPSVVCVEssssapapaagllplydassllsssdllTAHEFQHQQQQDNKATNPVCVVKEEGVNLMGFVGGASTSSHHNHHPYLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGYvvpssstvaagasgstsnevsrstssLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNAsgivvddgdgsdNRRKKSRLISMLDEVyrrykqyyqqmqAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQIQANRGKDEASTFGSTDRGPYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKATQREEQSANRSSDHlpssnslpsenpststQRVQETPSKRSRDEFPDIPVGNEEPPNLSYNSLSNHPHVGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDVIGGQLLHDFVG
******************************************************************************PVCVVKEEGVNLMGFVG*****************************************************************************************PLELNLQRYGSAIYGDHRVTSTGYVV**************************FGPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNASGIVV**************LISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQF**********************************GFI******VWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHML****************************************************************************VGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDVIGGQLLHDF**
*****EP*HVPQQSRRD************************************************************************************************************************************************************************************************************************************ILKGSRFLKPAQQLLEEFCDVG******************************************SRLISMLDEVYRRYKQYYQQMQAAVASFEY*****NAAPFANLALKAMSKHFRSL*****************************************************************VTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLW*************************************************************************************************************************************************************LLHDFVG
MAEGFEPYHVPQQSRRDKLRIVAQNHPSV*********PAPAAGLLPLYDASSLLSSSDLLTAHE***********TNPVCVVKEEGVNLMGFVGGASTSSHHNHHPYLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGYVVPSSS*******************SLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNASGIVVDDGDGSDNRRKKSRLISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQI*************STDRGPYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLE**************************************************EFPDIPVGNEEPPNLSYNSLSNHPHVGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDVIGGQLLHDFVG
*******Y**PQQSRRDKLRIVAQNHPSVVCVESSSSAPAPAAGLLPLYDASSLLSSSDLLTAHEFQHQQQQDNKATNPVCVVKEEGVNLMGFVGGASTSSHHNHHPYLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYG***********************************LPFGPFTGYASILKGSRFLKPAQQLLEEFCDVG********************************GDGSDNRRKKSRLISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQIQ******EASTFGSTDRGPYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQG**************************************************************YNSLSNHPHVGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGL********FVLSG*****RIFGRDVIGGQLLHDFVG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAEGFEPYHVPQQSRRDKLRIVAQNHPSVVCVESSSSAPAPAAGLLPLYDASSLLSSSDLLTAHEFQHQQQQDNKATNPVCVVKEEGVNLMGFVGGASTSSHHNHHPYLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGYVVPSSSTVAAGASGSTSNEVSRSTSSLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNASGIVVDDGDGSDNRRKKSRLISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQIQANRGKDEASTFGSTDRGPYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKATQREEQSANRSSDHLPSSNSLPSENPSTSTQRVQETPSKRSRDEFPDIPVGNEEPPNLSYNSLSNHPHVGVGVSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDVIGGQLLHDFVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query641 2.2.26 [Sep-21-2011]
Q9LZM8575 BEL1-like homeodomain pro yes no 0.712 0.794 0.506 1e-105
Q9SJJ3584 BEL1-like homeodomain pro no no 0.483 0.530 0.449 6e-65
O65685532 BEL1-like homeodomain pro no no 0.489 0.590 0.398 7e-58
Q9SIW1482 BEL1-like homeodomain pro no no 0.558 0.742 0.364 3e-57
Q9SW80739 BEL1-like homeodomain pro no no 0.363 0.315 0.479 5e-57
Q94KL5627 BEL1-like homeodomain pro no no 0.368 0.376 0.466 6e-57
Q9FWS9524 BEL1-like homeodomain pro no no 0.369 0.452 0.443 4e-55
Q9FXG8538 BEL1-like homeodomain pro no no 0.385 0.459 0.432 4e-55
Q38897611 Homeobox protein BEL1 hom no no 0.558 0.585 0.359 4e-52
Q8S897431 BEL1-like homeodomain pro no no 0.383 0.570 0.413 3e-51
>sp|Q9LZM8|BLH9_ARATH BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1 Back     alignment and function desciption
 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 262/517 (50%), Positives = 326/517 (63%), Gaps = 60/517 (11%)

Query: 149 DQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGY 208
           D S+N G  S +V++FKPEPL+LSLSSH                Y   + G         
Sbjct: 95  DHSFNAGLSSGDVLVFKPEPLSLSLSSHPRLA------------YDLVVPG--------- 133

Query: 209 VVPSSSTVAAGASGSTSNEVSRSTSSLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQ 268
           VV S    +AG + + +  ++ S SS P GPFTGYASILKGSRFLKPAQ LL+EFC+VG+
Sbjct: 134 VVNSGFCRSAGEANAAAVTIA-SRSSGPLGPFTGYASILKGSRFLKPAQMLLDEFCNVGR 192

Query: 269 GVFAEK--NYTVDSSLMDPPLVNLNASGIVVDDGDGSDNRRKKSRLISMLDEVYRRYKQY 326
           G++ +K  +    S L DP + NL      V DG G DN +KKS+LISMLDEVY+RYKQY
Sbjct: 193 GIYTDKVIDDDDSSLLFDPTVENL----CGVSDGGGGDNGKKKSKLISMLDEVYKRYKQY 248

Query: 327 YQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFT--NKAQIQANR 384
           Y+Q+QA + SFE VAGLG+AAP+ANLALKA+SKHF+ LKNAITDQLQF+  NK Q Q   
Sbjct: 249 YEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHNNKIQQQQQC 308

Query: 385 G-------KDEASTFGSTD--RG--PYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVL 433
           G       K ++  FG +D  RG    G R     GF +  + PVWRP RGLPERAVTVL
Sbjct: 309 GHPMNSENKTDSLRFGGSDSSRGLCSAGQR----HGFPDHHA-PVWRPHRGLPERAVTVL 363

Query: 434 RAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQ 493
           RAWLF+HFLHPYPTDT+KLMLAKQTGLSR+QVSNWFINARVR+WKPMVEEIHMLETRQ Q
Sbjct: 364 RAWLFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETRQSQ 423

Query: 494 KATQREEQSANRSSDHLPSSNSLPSENPSTSTQRVQETPSKRSR-DEFPDIPVGNEEPPN 552
           +++    +    S+   P +++    + S   +    +P +R+R D+       N    +
Sbjct: 424 RSSSSSWRDERTSTTVFPDNSNNNPSSSSAQQRPNNSSPPRRARNDDVHGTNNNNSYVNS 483

Query: 553 LSYNSLSNHPHVGVG-----VSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVH 607
            S    +     G+G     V  +  N GVSLTLGL+    IGL EP+P++ AQRFGL  
Sbjct: 484 GSGGGSAVGFSYGIGSSNVPVMNSSTNGGVSLTLGLHHQ--IGLPEPFPMTTAQRFGLDG 541

Query: 608 ETSSEGFVLSGYEAQSRIFGRDVIGG---QLLHDFVG 641
            +        GYE Q+R FGRD IGG   Q LHDFVG
Sbjct: 542 GSGDG---GGGYEGQNRQFGRDFIGGSNHQFLHDFVG 575
Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SJJ3|BLH8_ARATH BEL1-like homeodomain protein 8 OS=Arabidopsis thaliana GN=BLH8 PE=1 SV=1 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
147770644642 hypothetical protein VITISV_024375 [Viti 0.954 0.953 0.701 0.0
359481727609 PREDICTED: uncharacterized protein LOC10 0.907 0.955 0.672 0.0
255577967599 bel1 homeotic protein, putative [Ricinus 0.915 0.979 0.644 0.0
297740294561 unnamed protein product [Vitis vinifera] 0.831 0.950 0.624 0.0
356496090609 PREDICTED: BEL1-like homeodomain protein 0.925 0.973 0.598 1e-177
356566587573 PREDICTED: BEL1-like homeodomain protein 0.870 0.973 0.553 1e-161
449439964480 PREDICTED: BEL1-like homeodomain protein 0.595 0.795 0.593 1e-128
357505725516 BEL1-like homeodomain protein [Medicago 0.731 0.908 0.522 1e-128
342298434566 REPLUMLESS-like protein [Lepidium campes 0.850 0.962 0.445 1e-113
342298422573 REPLUMLESS-like protein [Lepidium appeli 0.856 0.958 0.436 1e-108
>gi|147770644|emb|CAN73410.1| hypothetical protein VITISV_024375 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/671 (70%), Positives = 536/671 (79%), Gaps = 59/671 (8%)

Query: 1   MAEGFEPYHVPQQSRRDKLRIVAQNHPSVVCVESSSSAPAPAAGLLPLYDASSLLSSSDL 60
           MA+GFEPYHVPQQSRRDKLR+VAQNH    CVE++ +     AGLLPLYD S L   SDL
Sbjct: 1   MADGFEPYHVPQQSRRDKLRVVAQNHSG--CVEAAXNLHG-CAGLLPLYDPSLL--PSDL 55

Query: 61  LT-----AHEFQHQQQ-----QDNKATNPVCVVKEEGVNLMGFVGG---ASTSSHHNHHP 107
           LT     AHEFQH         +    NP CVVKEEGVNLMG+VGG   AS+SS  +HHP
Sbjct: 56  LTCASASAHEFQHHSHPLSGSAEACKANPGCVVKEEGVNLMGYVGGIMNASSSSSTSHHP 115

Query: 108 YLDPHSTLHNLNPSSILDINNNNNPFLFTAPHNLQNQLRDFDQSYNGGEGSSEVVLFKPE 167
           YLDP S+L  +NPSSI D+N+N  PF F AP NL    RDFDQS+NGGE    +V+FKPE
Sbjct: 116 YLDPQSSL-PINPSSIQDMNHN--PF-FYAPQNL----RDFDQSFNGGE----MVVFKPE 163

Query: 168 PLAL--------------SLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGYVVPSS 213
           PL+L              SLSSHHT QNN LPLELNLQRYGSAI+ D +VT  GY+VP  
Sbjct: 164 PLSLTHHESNTTGQGLSLSLSSHHTHQNN-LPLELNLQRYGSAIFSD-KVTG-GYMVPG- 219

Query: 214 STVAAGASGSTSNEVSRSTSSLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQGVFAE 273
                G SGSTSN+VSRS  S+P GPFTGYASILKGSRFLKPAQQLLEEFCDVG G++AE
Sbjct: 220 ---IVGGSGSTSNDVSRS--SVPLGPFTGYASILKGSRFLKPAQQLLEEFCDVGCGLYAE 274

Query: 274 KNYTVDSSLMDPPLVNLNASGIVVDD---GDGSDNRRKKSRLISMLDEVYRRYKQYYQQM 330
           +  + DSS+MDPP+ +L+ +GIV D    GDG ++RRKKSRLISMLDEVYRRYK YYQQM
Sbjct: 275 R-VSADSSMMDPPMESLSGTGIVDDPLSCGDGGEHRRKKSRLISMLDEVYRRYKHYYQQM 333

Query: 331 QAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFTNKAQIQANRGKDEAS 390
           QA VASFE VAGLGNAAP+A+LALKAMSKHFR LKNAITDQLQFTNKA  Q + GKDE+ 
Sbjct: 334 QAVVASFESVAGLGNAAPYADLALKAMSKHFRCLKNAITDQLQFTNKAHGQISHGKDESP 393

Query: 391 TFGSTDRGPYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTE 450
            FG+TDRG YG RP+ +SGF+E Q  PVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDT+
Sbjct: 394 RFGNTDRGLYGQRPMHSSGFLEHQ--PVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTD 451

Query: 451 KLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKATQREEQSANRSSDHL 510
           KLMLAKQTGLSR+QVSNWFINARVRLWKPMVEEIH LETRQ QK++QREE+SA+R SDHL
Sbjct: 452 KLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETRQAQKSSQREERSADRQSDHL 511

Query: 511 PSSNSLPSENPSTSTQRVQETPSKRSRDEFPDIPVGNEEPPNLSYNSLSNHPHVGVGVSM 570
           PS+NSL  ENPSTS QRVQ+ PSKR+R+E  ++ VG+EEP NLSYN+LS HPHVGVGVS 
Sbjct: 512 PSANSLVFENPSTSAQRVQDAPSKRTRNELSEVHVGSEEPMNLSYNNLSAHPHVGVGVST 571

Query: 571 AGGNSGVSLTLGLYQNNGIGLSEPYPISAAQRFGLVHETSSEGFVLSGYEAQSRIFGRDV 630
           AGG+S VSLTLGL+QNNGIGLSE +PI+AAQRFGL  + +SEG+V+ G+EAQ+R FGRDV
Sbjct: 572 AGGSSNVSLTLGLHQNNGIGLSESFPINAAQRFGLGLDANSEGYVIGGFEAQNRHFGRDV 631

Query: 631 IGGQLLHDFVG 641
           IGGQLLHDFVG
Sbjct: 632 IGGQLLHDFVG 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481727|ref|XP_002272686.2| PREDICTED: uncharacterized protein LOC100266680 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577967|ref|XP_002529855.1| bel1 homeotic protein, putative [Ricinus communis] gi|223530631|gb|EEF32505.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297740294|emb|CBI30476.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496090|ref|XP_003516903.1| PREDICTED: BEL1-like homeodomain protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356566587|ref|XP_003551512.1| PREDICTED: BEL1-like homeodomain protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449439964|ref|XP_004137755.1| PREDICTED: BEL1-like homeodomain protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357505725|ref|XP_003623151.1| BEL1-like homeodomain protein [Medicago truncatula] gi|355498166|gb|AES79369.1| BEL1-like homeodomain protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|342298434|emb|CBY05407.1| REPLUMLESS-like protein [Lepidium campestre] Back     alignment and taxonomy information
>gi|342298422|emb|CBY05401.1| REPLUMLESS-like protein [Lepidium appelianum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
TAIR|locus:2185183575 RPL "AT5G02030" [Arabidopsis t 0.703 0.784 0.481 2.7e-109
TAIR|locus:2057856584 BLH8 "AT2G27990" [Arabidopsis 0.405 0.445 0.472 3.7e-65
TAIR|locus:2039250680 BLH1 "AT2G35940" [Arabidopsis 0.313 0.295 0.485 3e-56
TAIR|locus:2177856611 BEL1 "AT5G41410" [Arabidopsis 0.494 0.518 0.376 1.7e-55
TAIR|locus:2115000739 BLH2 "AT4G36870" [Arabidopsis 0.658 0.571 0.320 5.1e-51
TAIR|locus:2049035627 BLH4 "BEL1-like homeodomain 4" 0.391 0.400 0.411 1.6e-49
TAIR|locus:2018398524 BLH3 "AT1G75410" [Arabidopsis 0.413 0.505 0.381 1.4e-48
TAIR|locus:2042609482 BLH7 "AT2G16400" [Arabidopsis 0.402 0.535 0.390 1.4e-48
TAIR|locus:2139614532 BLH6 "AT4G34610" [Arabidopsis 0.595 0.718 0.330 1.8e-46
TAIR|locus:2013154538 BEL10 "AT1G19700" [Arabidopsis 0.505 0.602 0.352 3.4e-45
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 973 (347.6 bits), Expect = 2.7e-109, Sum P(3) = 2.7e-109
 Identities = 252/523 (48%), Positives = 304/523 (58%)

Query:   149 DQSYNGGEGSSEVVLFKPEPLALSLSSHHTTQNNSLPLELNLQRYGSAIYGDHRVTSTGY 208
             D S+N G  S +V++FKPEPL+LSLSSH        P  L    Y   + G   V ++G+
Sbjct:    95 DHSFNAGLSSGDVLVFKPEPLSLSLSSH--------P-RL---AYDLVVPG---VVNSGF 139

Query:   209 XXXXXXXXXXXXXXXXXXXXXXXXXXLPFGPFTGYASILKGSRFLKPAQQLLEEFCDVGQ 268
                                        P GPFTGYASILKGSRFLKPAQ LL+EFC+VG+
Sbjct:   140 CRSAGEANAAAVTIASRSSG-------PLGPFTGYASILKGSRFLKPAQMLLDEFCNVGR 192

Query:   269 GVFAEKNYTVDSS--LMDPPLVNLNAXXXXXXXXXXXXNRRKKSRLISMLDEVXXXXXXX 326
             G++ +K    D S  L DP + NL              N +KKS+LISMLDEV       
Sbjct:   193 GIYTDKVIDDDDSSLLFDPTVENLCGVSDGGGGD----NGKKKSKLISMLDEVYKRYKQY 248

Query:   327 XXXXXAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAITDQLQFT--NKAQIQANR 384
                  A + SFE VAGLG+AAP+ANLALKA+SKHF+ LKNAITDQLQF+  NK Q Q   
Sbjct:   249 YEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHNNKIQQQQQC 308

Query:   385 G-------KDEASTFGSTD--RG--PYGHRPVLNSGFIERQSQPVWRPQRGLPERAVTVL 433
             G       K ++  FG +D  RG    G R     GF +  + PVWRP RGLPERAVTVL
Sbjct:   309 GHPMNSENKTDSLRFGGSDSSRGLCSAGQR----HGFPDHHA-PVWRPHRGLPERAVTVL 363

Query:   434 RAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQ 493
             RAWLF+HFLHPYPTDT+KLMLAKQTGLSR+QVSNWFINARVR+WKPMVEEIHMLETRQ Q
Sbjct:   364 RAWLFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETRQSQ 423

Query:   494 KATQREEQSANRSSDHXXXXXXXXXXXXXXXXQRVQET-PSKRSRDEFPDIPVGNEEPPN 552
             +++    +   R+S                  QR   + P +R+R++  D+   N    N
Sbjct:   424 RSSSSSWRD-ERTSTTVFPDNSNNNPSSSSAQQRPNNSSPPRRARND--DVHGTNN---N 477

Query:   553 LSY-NSLSNHPHV-----GVG-----VSMAGGNSGVSLTLGLYQNNGIGLSEPYPISAAQ 601
              SY NS S          G+G     V  +  N GVSLTLGL+    IGL EP+P++ AQ
Sbjct:   478 NSYVNSGSGGGSAVGFSYGIGSSNVPVMNSSTNGGVSLTLGLHHQ--IGLPEPFPMTTAQ 535

Query:   602 RFGLVHETSSEGFVLSGYEAQSRIFGRDVIGG---QLLHDFVG 641
             RFGL   +   G    GYE Q+R FGRD IGG   Q LHDFVG
Sbjct:   536 RFGLDGGSGDGG---GGYEGQNRQFGRDFIGGSNHQFLHDFVG 575
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0007389 "pattern specification process" evidence=RCA;IMP
GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP
GO:0080006 "internode patterning" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0010076 "maintenance of floral meristem identity" evidence=IGI
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI
GO:0048645 "organ formation" evidence=IGI
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP
GO:0048457 "floral whorl morphogenesis" evidence=IMP
GO:0010154 "fruit development" evidence=IMP
GO:0048367 "shoot system development" evidence=IGI
GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI
GO:0010223 "secondary shoot formation" evidence=IGI
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009886 "post-embryonic morphogenesis" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048438 "floral whorl development" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
GO:0048513 "organ development" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2057856 BLH8 "AT2G27990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LZM8BLH9_ARATHNo assigned EC number0.50670.71290.7947yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
pfam07526139 pfam07526, POX, Associated with HOX 1e-49
smart00574140 smart00574, POX, domain associated with HOX domain 2e-44
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 1e-21
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 2e-13
smart0038957 smart00389, HOX, Homeodomain 8e-11
pfam0004657 pfam00046, Homeobox, Homeobox domain 7e-06
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  168 bits (428), Expect = 1e-49
 Identities = 62/139 (44%), Positives = 88/139 (63%), Gaps = 13/139 (9%)

Query: 245 SILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTVDSSLMDPPLVNLNASGIVVDDGDGSD 304
           S+L+GS++LKPAQ+LLEEFC VG+    + + +  +          +  G     GD SD
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVGKNKALDDDSSNGAENGANSSGASSGDGGGSSAGDSSD 60

Query: 305 N-------------RRKKSRLISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFAN 351
           +             +RKK++L+SML+EV RRY+QYY QMQ  ++SFE VAGLG A P+  
Sbjct: 61  SSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAKPYTA 120

Query: 352 LALKAMSKHFRSLKNAITD 370
           LAL+AMS+HFR L++AI+ 
Sbjct: 121 LALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 641
smart00574140 POX domain associated with HOX domains. 100.0
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 99.97
KOG0774334 consensus Transcription factor PBX and related HOX 99.92
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.59
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.39
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.36
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.35
KOG0775304 consensus Transcription factor SIX and related HOX 99.18
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 98.93
KOG0487308 consensus Transcription factor Abd-B, contains HOX 98.86
KOG0489261 consensus Transcription factor zerknullt and relat 98.76
KOG0488309 consensus Transcription factor BarH and related HO 98.72
KOG0843197 consensus Transcription factor EMX1 and related HO 98.7
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.7
KOG0493342 consensus Transcription factor Engrailed, contains 98.7
KOG0850245 consensus Transcription factor DLX and related pro 98.67
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.66
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 98.58
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.48
COG5576156 Homeodomain-containing transcription factor [Trans 98.44
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 98.42
KOG0492246 consensus Transcription factor MSH, contains HOX d 98.41
KOG2251228 consensus Homeobox transcription factor [Transcrip 98.35
KOG0494332 consensus Transcription factor CHX10 and related H 98.24
KOG0848317 consensus Transcription factor Caudal, contains HO 98.16
KOG0486351 consensus Transcription factor PTX1, contains HOX 98.15
KOG0491194 consensus Transcription factor BSH, contains HOX d 98.09
KOG4577383 consensus Transcription factor LIM3, contains LIM 98.08
KOG2252558 consensus CCAAT displacement protein and related h 97.88
KOG0844408 consensus Transcription factor EVX1, contains HOX 97.62
KOG0847288 consensus Transcription factor, contains HOX domai 97.61
KOG0490235 consensus Transcription factor, contains HOX domai 97.51
KOG0849354 consensus Transcription factor PRD and related pro 97.46
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 97.39
KOG0773342 consensus Transcription factor MEIS1 and related H 97.33
PF03792191 PBC: PBC domain; InterPro: IPR005542 Pbx proteins 96.99
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 96.08
KOG0490235 consensus Transcription factor, contains HOX domai 95.16
KOG1146 1406 consensus Homeobox protein [General function predi 90.85
>smart00574 POX domain associated with HOX domains Back     alignment and domain information 
Probab=100.00  E-value=4e-40  Score=305.98  Aligned_cols=129  Identities=47%  Similarity=0.748  Sum_probs=103.5

Q ss_pred             ccccccccCCCCchHHHHHHHHHhhcCccccccccccc-CCC----CCCCcccccCCCC-----CCCCCCCchhHHHHHH
Q 006550          241 TGYASILKGSRFLKPAQQLLEEFCDVGQGVFAEKNYTV-DSS----LMDPPLVNLNASG-----IVVDDGDGSDNRRKKS  310 (641)
Q Consensus       241 tg~asvl~~SryLkpaQeLL~E~~~vg~g~~~~~~~~~-~~~----~~~~~~~~~~~~g-----~~~~~~~~~e~q~Kk~  310 (641)
                      +||+++|++|||||||||||||||+|+++++..+..+. +..    ..+...+..++.+     ......+++|+|+||+
T Consensus         1 ~g~~~~l~~SkyLk~aQeLLdEf~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ls~~~r~e~q~kk~   80 (140)
T smart00574        1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPVSTSSNEGGGENLSGGSSSSEVPPLSTAERQELQRKKA   80 (140)
T ss_pred             CchhhhccCccccccHHHHHHHHhcccHHhhcccccccccccccccccCCCcCCCCCCCCCCCCCCCchhHHHHHHHHHH
Confidence            58999999999999999999999999988764432221 111    0111222111111     1112456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccchHHHHHHHHhhhcchHHHHH
Q 006550          311 RLISMLDEVYRRYKQYYQQMQAAVASFEYVAGLGNAAPFANLALKAMSKHFRSLKNAIT  369 (641)
Q Consensus       311 KLl~mLdEV~~RY~qY~~qmq~VvssFe~~aGlg~a~pYt~lAlkamSrhFr~LrdaI~  369 (641)
                      ||+.||||||+||+|||+|||+|+++||+++|+|+++|||+||+|+||||||||||+|.
T Consensus        81 kLl~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~SrhFr~LrdaI~  139 (140)
T smart00574       81 KLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIA  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999996

>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 1e-12
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 2e-12
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 4e-11
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 7e-11
1lfu_P82 Nmr Solution Stucture Of The Extended Pbx Homeodoma 2e-07
1puf_B73 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 3e-07
1b72_B87 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 3e-07
1b8i_B63 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 7e-07
1du6_A64 Solution Structure Of The Truncated Pbx Homeodomain 2e-06
4egc_A559 Crystal Structure Of Mbp-fused Human Six1 Bound To 4e-05
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 422 QRG-LPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRL 476
           +RG LP+ A  V+R+WLF+H  HPYPT+ EK  +A QT L+  QV+NWFINAR R+
Sbjct: 10  KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Back     alignment and structure
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 73 Back     alignment and structure
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Back     alignment and structure
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 63 Back     alignment and structure
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain Length = 64 Back     alignment and structure
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human Eya2 Eya Domain Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 1e-39
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 4e-36
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 2e-35
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 1e-34
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 7e-34
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 1e-33
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 7e-32
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 3e-28
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 5e-28
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 6e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 2e-08
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 4e-08
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 2e-07
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 8e-07
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 9e-07
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 3e-06
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 4e-06
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 3e-05
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 3e-05
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 3e-05
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 2e-04
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 2e-04
2xsd_C164 POU domain, class 3, transcription factor 1; trans 4e-04
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
 Score =  139 bits (351), Expect = 1e-39
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 419 WRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWK 478
            R +R   ++A  +L  + + H  +PYP++  K  LAK+ G++ SQVSNWF N R+R  K
Sbjct: 2   RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61

Query: 479 PMVEEIHMLETRQGQKATQREEQSAN 504
            + +          + A      SA+
Sbjct: 62  NIGKFQEEANIYAAKTAVTATNVSAH 87
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 641
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 8e-20
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 4e-18
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 2e-16
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 3e-08
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 1e-07
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 1e-07
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 2e-06
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 3e-06
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 7e-06
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 1e-05
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 1e-05
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 2e-05
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 2e-05
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 3e-05
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 3e-05
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 4e-05
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 6e-05
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 8e-05
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 1e-04
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 1e-04
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 2e-04
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 2e-04
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 2e-04
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 3e-04
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 4e-04
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 5e-04
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 0.001
d1ig7a_58 a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu 0.003
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (201), Expect = 8e-20
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 420 RPQRG-LPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRL 476
           + +RG LP+ A  V+R+WLF+H  HPYPT+ EK  +A QT L+  QV+NWFINAR R+
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 60
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query641
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.75
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.73
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.67
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.5
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.46
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.45
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.44
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.44
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.42
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.41
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.41
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.4
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.39
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.39
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.38
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.38
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.38
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.38
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.37
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.35
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.35
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.34
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.33
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.33
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.32
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.31
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.29
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.29
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.21
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.18
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.18
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.17
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.2e-19  Score=123.99  Aligned_cols=63  Identities=38%  Similarity=0.693  Sum_probs=59.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHHH
Q ss_conf             899989996799999999997149999999999999999599924441000144520160316
Q 006550          419 WRPQRGLPERAVTVLRAWLFEHFLHPYPTDTEKLMLAKQTGLSRSQVSNWFINARVRLWKPMV  481 (641)
Q Consensus       419 kRkRR~Lpkeav~iLraWl~eH~~nPYPS~~EK~~LAkqTGLS~sQVsNWFiNaRrRlkKpmi  481 (641)
                      +|+|+.|+++++.+|+.||.+|..+|||+.+++.+||.+|||+..||.+||+|+|+|.|+...
T Consensus         2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~~   64 (73)
T d1pufb_           2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG   64 (73)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             999987899999999999998437889999999999999793999969988998987430536
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure