Citrus Sinensis ID: 006552

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-

MAPSISKVASGVRTLVDGSDNQSTNIDITLEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVFSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKVCYWLWYHLIQTWTLCDGPDGHNPVANFYYLIFATVHWSYWGI

ccccccccccccccccccccccccccEEEEEccEEEEccEEccccccccEEEcccccccccccccccccEEEcccccccccccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEccccccccEEEEEEEEEccEEEEEcccccccEEEEEEccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEccEEHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEccccccHHHcccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccEEEEcccccccHHHHccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccEEEEEEEEcccccc

ccccccccccccccccccccccccccEEEEcccEEEEccEEEEccccccEEEEccccccccccccccccEEEEEcccccccccEEEcccccccEEEEEEEEEEEEHccccccccccccHcHEEEEEEcccccccEEEEEEEEEcccEEEEEEcccccEEEEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHccccHHHHccccccHHHHHccccHHHHHHHHHHHHHcccccEEEEEEccccEccccccccccccHHHcccccHHHHHHccccHHHHHHcccccccccccccccHHHHHHHHHHHcccccEEEEEHHHHccccccccccccHHHcccEEEccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEccccccccccHHccccccccccEEEEEEcHHHHHHHHHHHcccEHHHccccccccHHHHHHHHHHHHHHHHHccc

MAPSISKVASGVrtlvdgsdnqstniditledsklhanghvflsdvpdnvtltpstatateksvfsnvgsfigfdsfepksrhvvpigklkniRFMSIFRFKVWWTTHwvgsngrdlenetQLVIldnstdtgrpyVLLLpivegpfraslqpgaddyVDVCvesgstkvtgdsFRSVVYVHLGDDPFKLVKDAMRVVRSHLgtfklldektpppivdkfgwctwdafyltvqphgvmegvkglvdggcppglvliddgwqsishdedpidseginrtaageqmpcrllryqenfkfrdyvspnggdssdnkgmGAFIRDLKDEFKTVDQVYVWHALCGywgglrpnipglpekttvvkpklspgleltmeDLAVDKIvnngvgfvppelVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIAlgrvgddfwctdpsgdpngtfwlqgCHMVHCAynslwmgnfihpdwdmfqsthpcaefhaasraisggpiyvsdcvgkhnfpllkrlsmpdgsilrceyyalptrdclfadplhdgktMLKIWNLNKVCYWLWYHLIQTwtlcdgpdghnpvaNFYYLIFATVHWSYWGI

mapsiskvasgvrtlvdgsdnqstNIDITLEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVFSNVGSFigfdsfepksrhvvpigklknirFMSIFRFKVWWTTHWVgsngrdleneTQLVILdnstdtgrPYVLLLPIVEGPFRASLQPGADDYVDVCVESgstkvtgdsfrSVVYVHLGDDPFKLVKDAMRVVRSHLgtfklldektpppIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVspnggdssdnkGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPllkrlsmpdgSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKVCYWLWYHLIQTWTLCDGPDGHNPVANFYYLIFATVHWSYWGI

***************************ITLEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVFSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGLVLIDDGWQSI********************MPCRLLRYQENFKFRDYV************MGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKVCYWLWYHLIQTWTLCDGPDGHNPVANFYYLIFATVHWSYWG*

****************************TLEDSKLHANGHVFLSDVPDNVTLT**********VFSNVGSFI***********VVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLGDDPFKLVKDAMRVVRS**************PIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGLVLIDDGWQSISHDEDPI**********GEQMPCRLLRYQEN********************GAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKVCYWLWYHLIQTWTLCDGPDG****ANFYYLIFATV****WGI

**********************STNIDITLEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVFSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKVCYWLWYHLIQTWTLCDGPDGHNPVANFYYLIFATVHWSYWGI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		641	2.2.26 [Sep-21-2011]
Q9FND9		783	Probable galactinol--sucr	yes	no	0.898	0.735	0.745	0.0
Q5VQG4		783	Galactinol--sucrose galac	yes	no	0.915	0.749	0.706	0.0
Q8VWN6		798	Galactinol--sucrose galac	N/A	no	0.923	0.741	0.673	0.0
Q93XK2		853	Stachyose synthase OS=Pis	N/A	no	0.881	0.662	0.449	1e-155
Q94A08		773	Probable galactinol--sucr	no	no	0.847	0.702	0.418	1e-129
Q8RX87		749	Probable galactinol--sucr	no	no	0.839	0.718	0.421	1e-125
Q84VX0		754	Probable galactinol--sucr	no	no	0.859	0.730	0.411	1e-118
Q9SYJ4		876	Probable galactinol--sucr	no	no	0.457	0.334	0.567	4e-99
Q97U94		648	Alpha-galactosidase OS=Su	yes	no	0.549	0.543	0.273	4e-29

>sp\|Q9FND9\|RFS5_ARATH Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1	Back alignment and function desciption

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/594 (74%), Positives = 493/594 (82%), Gaps = 18/594 (3%)

Query: 19  SDNQSTNIDIT----LEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVFSNV--GSFI 72
           SD+    +D T    LEDS L ANG V L+DVP NVTLT S     +  V  +V  GSFI
Sbjct: 9   SDSGINGVDFTEKFRLEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFI 68

Query: 73  GFD-SFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNSTD 131
           GF+   EPKS HV  IGKLKNIRFMSIFRFKVWWTTHWVGSNGRD+ENETQ++ILD S  
Sbjct: 69  GFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILDQSGS 128

Query: 132 TG-------RPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLG 184
                    RPYVLLLP++EG FR+S Q G DD V VCVESGST+VTG  FR +VYVH G
Sbjct: 129 DSGPGSGSGRPYVLLLPLLEGSFRSSFQSGEDDDVAVCVESGSTEVTGSEFRQIVYVHAG 188

Query: 185 DDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGL 244
           DDPFKLVKDAM+V+R H+ TFKLL+EK+PP IVDKFGWCTWDAFYLTV P GV +GVK L
Sbjct: 189 DDPFKLVKDAMKVIRVHMNTFKLLEEKSPPGIVDKFGWCTWDAFYLTVNPDGVHKGVKCL 248

Query: 245 VDGGCPPGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPN 304
           VDGGCPPGLVLIDDGWQSI HD D ID EG+N T AGEQMPCRLL+++EN KF+DYVSP 
Sbjct: 249 VDGGCPPGLVLIDDGWQSIGHDSDGIDVEGMNITVAGEQMPCRLLKFEENHKFKDYVSPK 308

Query: 305 GGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSP 364
                ++ GM AF+RDLKDEF TVD +YVWHALCGYWGGLRP  P LP  +T+++P+LSP
Sbjct: 309 ---DQNDVGMKAFVRDLKDEFSTVDYIYVWHALCGYWGGLRPEAPALP-PSTIIRPELSP 364

Query: 365 GLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCEN 424
           GL+LTMEDLAVDKI+  G+GF  P+L  + YEGLHSHL+  GIDGVKVDVIH+LE+LC+ 
Sbjct: 365 GLKLTMEDLAVDKIIETGIGFASPDLAKEFYEGLHSHLQNAGIDGVKVDVIHILEMLCQK 424

Query: 425 YGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDP 484
           YGGRVDLAKAY+KALT+SV KHF GNGVIASMEHCNDFM LGTEAI+LGRVGDDFWCTDP
Sbjct: 425 YGGRVDLAKAYFKALTSSVNKHFNGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDP 484

Query: 485 SGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVS 544
           SGDPNGTFWLQGCHMVHCAYNSLWMGNFI PDWDMFQSTHPCAEFHAASRAISGGPIY+S
Sbjct: 485 SGDPNGTFWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYIS 544

Query: 545 DCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNK 598
           DCVGKH+F LLKRL +P+GSILRCEYYALPTRD LF DPLHDGKTMLKIWNLNK
Sbjct: 545 DCVGKHDFDLLKRLVLPNGSILRCEYYALPTRDRLFEDPLHDGKTMLKIWNLNK 598

Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 8EC: 2

>sp\|Q5VQG4\|RFS_ORYSJ Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1	Back alignment and function description

>sp\|Q8VWN6\|RFS_PEA Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1	Back alignment and function description

>sp\|Q93XK2\|STSYN_PEA Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1	Back alignment and function description

>sp\|Q94A08\|RFS2_ARATH Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2	Back alignment and function description

>sp\|Q8RX87\|RFS6_ARATH Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2	Back alignment and function description

>sp\|Q84VX0\|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SYJ4\|RFS4_ARATH Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=3	Back alignment and function description

>sp\|Q97U94\|AGAL_SULSO Alpha-galactosidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=galS PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
255567355		787	Stachyose synthase precursor, putative [	0.985	0.803	0.777	0.0
224133028		783	predicted protein [Populus trichocarpa]	0.925	0.757	0.81	0.0
224093196		750	predicted protein [Populus trichocarpa]	0.886	0.757	0.823	0.0
224131914		775	predicted protein [Populus trichocarpa]	0.934	0.772	0.765	0.0
225452378		775	PREDICTED: galactinol--sucrose galactosy	0.911	0.753	0.795	0.0
449446690		784	PREDICTED: probable galactinol--sucrose	0.923	0.755	0.761	0.0
4106395		784	raffinose synthase [Cucumis sativus]	0.923	0.755	0.756	0.0
348162129		793	raffinose synthase [Boea hygrometrica]	0.926	0.749	0.737	0.0
224133642		765	predicted protein [Populus trichocarpa]	0.897	0.751	0.750	0.0
357461865		786	Galactinol-sucrose galactosyltransferase	0.921	0.751	0.728	0.0

>gi\|255567355\|ref\|XP_002524657.1\| Stachyose synthase precursor, putative [Ricinus communis] gi\|223536018\|gb\|EEF37676.1\| Stachyose synthase precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/639 (77%), Positives = 545/639 (85%), Gaps = 7/639 (1%)

Query: 1   MAPSISKVASGVRTLVDGS--DNQSTNIDITLEDSKLHANGHVFLSDVPDNVTLTPSTAT 58
           MAPS+SK  SG   LV  S   N S    I+LEDS L ANGHVFLS VPDN+TLTPS   
Sbjct: 1   MAPSLSKANSGPEGLVVESYDINHSNQFVISLEDSNLKANGHVFLSCVPDNITLTPSRYA 60

Query: 59  ATEKSVFSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLE 118
            T+KS  + VGSFIGFDS E K RHV+ IGKLKNI+FMSIFRFKVWWTTHWVGSNGRDLE
Sbjct: 61  LTDKSS-TTVGSFIGFDSMESKDRHVISIGKLKNIKFMSIFRFKVWWTTHWVGSNGRDLE 119

Query: 119 NETQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSV 178
           NETQ++ILD S D+GRPY+LLLP++EGPFRASLQPG DD +D+CVESGSTKV    F+SV
Sbjct: 120 NETQMLILDKS-DSGRPYILLLPLLEGPFRASLQPGNDDNIDICVESGSTKVLAAGFQSV 178

Query: 179 VYVHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVM 238
           +YVH+GDDP+KLVKDAM++V+ HLGTFKLL+EK PP IVDKFGWCTWDAFYLTV P G+ 
Sbjct: 179 LYVHIGDDPYKLVKDAMKIVKVHLGTFKLLEEKNPPGIVDKFGWCTWDAFYLTVHPQGIW 238

Query: 239 EGVKGLVDGGCPPGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFR 298
           EGVKGLVDGGCPPGLVLIDDGWQSISHDEDPI  EG+N   AGEQMPCRLL++QEN+KFR
Sbjct: 239 EGVKGLVDGGCPPGLVLIDDGWQSISHDEDPITKEGMNAAVAGEQMPCRLLKFQENYKFR 298

Query: 299 DYVSPN--GGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTT 356
           DYVSP      S++NKGMGAFI+DLK+EF +VD VYVWHALCGYWGGLRPN+PGLP+ T 
Sbjct: 299 DYVSPKSLANGSTENKGMGAFIKDLKEEFSSVDYVYVWHALCGYWGGLRPNVPGLPD-TV 357

Query: 357 VVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIH 416
           VVKPKLSPGLELTMEDLAVDKIV+ GVG VPPE V+QMYEGLHSHL+ VGIDGVKVDVIH
Sbjct: 358 VVKPKLSPGLELTMEDLAVDKIVSTGVGLVPPETVEQMYEGLHSHLQNVGIDGVKVDVIH 417

Query: 417 LLEILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVG 476
           LLE+LCENYGGRVDLAKAYYKALTASVRKHF GNGVIASMEHCNDFM LGTEAI LGRVG
Sbjct: 418 LLEMLCENYGGRVDLAKAYYKALTASVRKHFNGNGVIASMEHCNDFMFLGTEAICLGRVG 477

Query: 477 DDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAI 536
           DDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAI
Sbjct: 478 DDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAI 537

Query: 537 SGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNL 596
           SGGPIYVSD VGKHNFPLLKRL +PDGSILRC+YYALPTRDCLF DPLHDGKTMLKIWNL
Sbjct: 538 SGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYYALPTRDCLFEDPLHDGKTMLKIWNL 597

Query: 597 NKVCYWLWYHLIQTWTLCDGPDGHNPVANFYYLIFATVH 635
           N+    +     Q    C     +   + F +L+ A  +
Sbjct: 598 NRFTGVIGVFNCQGGGWCRETRRNKCASQFSHLVTAKTN 636

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224133028\|ref\|XP_002327943.1\| predicted protein [Populus trichocarpa] gi\|222837352\|gb\|EEE75731.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224093196\|ref\|XP_002309828.1\| predicted protein [Populus trichocarpa] gi\|222852731\|gb\|EEE90278.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224131914\|ref\|XP_002328139.1\| predicted protein [Populus trichocarpa] gi\|222837654\|gb\|EEE76019.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225452378\|ref\|XP_002275628.1\| PREDICTED: galactinol--sucrose galactosyltransferase [Vitis vinifera] gi\|296087624\|emb\|CBI34880.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449446690\|ref\|XP_004141104.1\| PREDICTED: probable galactinol--sucrose galactosyltransferase 5-like [Cucumis sativus] gi\|124057819\|gb\|ABD72603.1\| raffinose synthase [Cucumis sativus]	Back alignment and taxonomy information

>gi\|4106395\|gb\|AAD02832.1\| raffinose synthase [Cucumis sativus]	Back alignment and taxonomy information

>gi\|348162129\|gb\|AEP68101.1\| raffinose synthase [Boea hygrometrica]	Back alignment and taxonomy information

>gi\|224133642\|ref\|XP_002321625.1\| predicted protein [Populus trichocarpa] gi\|222868621\|gb\|EEF05752.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357461865\|ref\|XP_003601214.1\| Galactinol-sucrose galactosyltransferase [Medicago truncatula] gi\|355490262\|gb\|AES71465.1\| Galactinol-sucrose galactosyltransferase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
TAIR\|locus:2170528		783	SIP1 "AT5G40390" [Arabidopsis	0.898	0.735	0.752	6.4e-250
UNIPROTKB\|Q5VQG4		783	RFS "Galactinol--sucrose galac	0.915	0.749	0.708	9.5e-240
UNIPROTKB\|Q93XK2		853	STS1 "Stachyose synthase" [Pis	0.457	0.343	0.614	6.4e-166
TAIR\|locus:2141425		876	STS "AT4G01970" [Arabidopsis t	0.457	0.334	0.567	9.8e-159
TAIR\|locus:2020452		754	SIP1 "AT1G55740" [Arabidopsis	0.854	0.726	0.420	2.3e-117
TAIR\|locus:2103488		773	SIP2 "AT3G57520" [Arabidopsis	0.687	0.570	0.390	2.1e-84
UNIPROTKB\|Q97U94		648	galS "Alpha-galactosidase" [Su	0.210	0.208	0.360	1.6e-27
ASPGD\|ASPL0000010056		863	aglF [Emericella nidulans (tax	0.347	0.258	0.304	2.3e-25
UNIPROTKB\|G4NBB7		908	MGG_11554 "Seed imbibition pro	0.358	0.253	0.300	1.5e-22
UNIPROTKB\|Q8A170		693	BT_3797 "Possible alpha-galact	0.141	0.131	0.358	1e-10

TAIR\|locus:2170528 SIP1 "AT5G40390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2407 (852.4 bits), Expect = 6.4e-250, P = 6.4e-250
 Identities = 447/594 (75%), Positives = 498/594 (83%)

Query:    19 SDNQSTNIDIT----LEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVFSNV--GSFI 72
             SD+    +D T    LEDS L ANG V L+DVP NVTLT S     +  V  +V  GSFI
Sbjct:     9 SDSGINGVDFTEKFRLEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFI 68

Query:    73 GFD-SFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNS-T 130
             GF+   EPKS HV  IGKLKNIRFMSIFRFKVWWTTHWVGSNGRD+ENETQ++ILD S +
Sbjct:    69 GFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILDQSGS 128

Query:   131 DTG------RPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLG 184
             D+G      RPYVLLLP++EG FR+S Q G DD V VCVESGST+VTG  FR +VYVH G
Sbjct:   129 DSGPGSGSGRPYVLLLPLLEGSFRSSFQSGEDDDVAVCVESGSTEVTGSEFRQIVYVHAG 188

Query:   185 DDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGL 244
             DDPFKLVKDAM+V+R H+ TFKLL+EK+PP IVDKFGWCTWDAFYLTV P GV +GVK L
Sbjct:   189 DDPFKLVKDAMKVIRVHMNTFKLLEEKSPPGIVDKFGWCTWDAFYLTVNPDGVHKGVKCL 248

Query:   245 VDGGCPPGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPN 304
             VDGGCPPGLVLIDDGWQSI HD D ID EG+N T AGEQMPCRLL+++EN KF+DYVSP 
Sbjct:   249 VDGGCPPGLVLIDDGWQSIGHDSDGIDVEGMNITVAGEQMPCRLLKFEENHKFKDYVSPK 308

Query:   305 GGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSP 364
               D +D  GM AF+RDLKDEF TVD +YVWHALCGYWGGLRP  P LP  +T+++P+LSP
Sbjct:   309 --DQND-VGMKAFVRDLKDEFSTVDYIYVWHALCGYWGGLRPEAPALPP-STIIRPELSP 364

Query:   365 GLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCEN 424
             GL+LTMEDLAVDKI+  G+GF  P+L  + YEGLHSHL+  GIDGVKVDVIH+LE+LC+ 
Sbjct:   365 GLKLTMEDLAVDKIIETGIGFASPDLAKEFYEGLHSHLQNAGIDGVKVDVIHILEMLCQK 424

Query:   425 YGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDP 484
             YGGRVDLAKAY+KALT+SV KHF GNGVIASMEHCNDFM LGTEAI+LGRVGDDFWCTDP
Sbjct:   425 YGGRVDLAKAYFKALTSSVNKHFNGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDP 484

Query:   485 SGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVS 544
             SGDPNGTFWLQGCHMVHCAYNSLWMGNFI PDWDMFQSTHPCAEFHAASRAISGGPIY+S
Sbjct:   485 SGDPNGTFWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYIS 544

Query:   545 DCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNK 598
             DCVGKH+F LLKRL +P+GSILRCEYYALPTRD LF DPLHDGKTMLKIWNLNK
Sbjct:   545 DCVGKHDFDLLKRLVLPNGSILRCEYYALPTRDRLFEDPLHDGKTMLKIWNLNK 598

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005986 "sucrose biosynthetic process" evidence=IMP

GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=IMP

GO:0019593 "mannitol biosynthetic process" evidence=IMP

GO:0047274 "galactinol-sucrose galactosyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

UNIPROTKB\|Q5VQG4 RFS "Galactinol--sucrose galactosyltransferase" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93XK2 STS1 "Stachyose synthase" [Pisum sativum (taxid:3888)]	Back alignment and assigned GO terms

TAIR\|locus:2141425 STS "AT4G01970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020452 SIP1 "AT1G55740" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2103488 SIP2 "AT3G57520" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q97U94 galS "Alpha-galactosidase" [Sulfolobus solfataricus P2 (taxid:273057)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000010056 aglF [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NBB7 MGG_11554 "Seed imbibition protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8A170 BT_3797 "Possible alpha-galactosidase" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5VQG4	RFS_ORYSJ	2, ., 4, ., 1, ., 8, 2	0.7067	0.9157	0.7496	yes	no
Q9FND9	RFS5_ARATH	2, ., 4, ., 1, ., 8, 2	0.7457	0.8985	0.7356	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00640058	galactinol-sucrose galactosyltransferase/hydrolase, hydrolyzing O-glycosyl compounds (EC-2.4.1.82) (783 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		641
PLN02711		777	PLN02711, PLN02711, Probable galactinol--sucrose g	0.0
pfam05691		742	pfam05691, Raffinose_syn, Raffinose synthase or se	0.0
PLN02355		758	PLN02355, PLN02355, probable galactinol--sucrose g	1e-170
PLN02684		750	PLN02684, PLN02684, Probable galactinol--sucrose g	1e-169
PLN02219		775	PLN02219, PLN02219, probable galactinol--sucrose g	1e-159
PLN02982		865	PLN02982, PLN02982, galactinol-raffinose galactosy	1e-159
PLN02982		865	PLN02982, PLN02982, galactinol-raffinose galactosy	1e-105
COG3345		687	COG3345, GalA, Alpha-galactosidase [Carbohydrate t	0.002

>gnl\|CDD\|215381 PLN02711, PLN02711, Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

 Score = 1239 bits (3208), Expect = 0.0
 Identities = 497/599 (82%), Positives = 531/599 (88%), Gaps = 10/599 (1%)

Query: 1   MAPSISKVASGVRTLVDGSDNQSTNIDITLEDSKLHANGHVFLSDVPDNVTLTPSTATAT 60
           MAPS+SK  SG   LVDG +       ITLE S   ANGH FLSDVPDN+TLTPS     
Sbjct: 1   MAPSLSKSNSGAMGLVDGLNPSL----ITLEGSNFLANGHPFLSDVPDNITLTPSPYLPD 56

Query: 61  EKSVFSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDLENE 120
            K +    GSF+GFD+ EPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRD+ENE
Sbjct: 57  NKPITVGAGSFVGFDAGEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDVENE 116

Query: 121 TQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVY 180
           TQ++ILD S D+GRPYVLLLP++EGPFRASLQPG DD VD+CVESGSTKV G  FRSV+Y
Sbjct: 117 TQMMILDKS-DSGRPYVLLLPLIEGPFRASLQPGEDDNVDICVESGSTKVCGSEFRSVLY 175

Query: 181 VHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEG 240
           +H GDDP+KLVKDAM+VVR HLGTFKLL+EKTPP IVDKFGWCTWDAFYLTV P GV EG
Sbjct: 176 MHAGDDPYKLVKDAMKVVRVHLGTFKLLEEKTPPGIVDKFGWCTWDAFYLTVHPQGVWEG 235

Query: 241 VKGLVDGGCPPGLVLIDDGWQSISHDEDPI-DSEGINRTAAGEQMPCRLLRYQENFKFRD 299
           VKGLVDGGCPPGLVLIDDGWQSI HDEDPI D EG+NRT AGEQMPCRLL+++EN+KFRD
Sbjct: 236 VKGLVDGGCPPGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENYKFRD 295

Query: 300 YVSPNGGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVK 359
           YVSP       NKGMGAFIRDLK+EFKTVD VYVWHALCGYWGGLRPN+PGLPE + VV 
Sbjct: 296 YVSPKS---LSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPE-SKVVA 351

Query: 360 PKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLE 419
           PKLSPGL++TMEDLAVDKIVNNGVG VPPEL  QMYEGLHSHL+ VGIDGVKVDVIHLLE
Sbjct: 352 PKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLE 411

Query: 420 ILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVGDDF 479
           +LCE YGGRV+LAKAYYKALTASVRKHF GNGVIASMEHCNDFM LGTEAI+LGRVGDDF
Sbjct: 412 MLCEEYGGRVELAKAYYKALTASVRKHFNGNGVIASMEHCNDFMFLGTEAISLGRVGDDF 471

Query: 480 WCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGG 539
           WCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGG
Sbjct: 472 WCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGG 531

Query: 540 PIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNK 598
           PIYVSD VGKHNFPLLKRL +PDGSILRC+YYALPTRDCLF DPLHDGKTMLKIWNLNK
Sbjct: 532 PIYVSDSVGKHNFPLLKRLVLPDGSILRCQYYALPTRDCLFEDPLHDGKTMLKIWNLNK 590

Length = 777

>gnl\|CDD\|218695 pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1	Back alignment and domain information

>gnl\|CDD\|215203 PLN02355, PLN02355, probable galactinol--sucrose galactosyltransferase 1	Back alignment and domain information

>gnl\|CDD\|166325 PLN02684, PLN02684, Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>gnl\|CDD\|165863 PLN02219, PLN02219, probable galactinol--sucrose galactosyltransferase 2	Back alignment and domain information

>gnl\|CDD\|215532 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>gnl\|CDD\|215532 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>gnl\|CDD\|225882 COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		641
PLN02982		865	galactinol-raffinose galactosyltransferase/ghydrol	100.0
PLN02711		777	Probable galactinol--sucrose galactosyltransferase	100.0
PLN02219		775	probable galactinol--sucrose galactosyltransferase	100.0
PLN02684		750	Probable galactinol--sucrose galactosyltransferase	100.0
PLN02355		758	probable galactinol--sucrose galactosyltransferase	100.0
PF05691		747	Raffinose_syn: Raffinose synthase or seed imbibiti	100.0
PLN02692		412	alpha-galactosidase	100.0
PLN02229		427	alpha-galactosidase	100.0
PLN02808		386	alpha-galactosidase	100.0
PLN03231		357	putative alpha-galactosidase; Provisional	100.0
PLN02899		633	alpha-galactosidase	100.0
KOG2366		414	consensus Alpha-D-galactosidase (melibiase) [Carbo	99.89
PF02065		394	Melibiase: Melibiase; InterPro: IPR000111 O-Glycos	99.88
COG3345		687	GalA Alpha-galactosidase [Carbohydrate transport a	99.76
cd06592		303	GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact	99.45
cd06593		308	GH31_xylosidase_YicI YicI alpha-xylosidase is a gl	99.14
PRK10658		665	putative alpha-glucosidase; Provisional	98.95
cd06598		317	GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide	98.8
cd06599		317	GH31_glycosidase_Aec37 Glycosyl hydrolase family 3	98.71
PRK10426		635	alpha-glucosidase; Provisional	98.7
cd06591		319	GH31_xylosidase_XylS XylS is a glycosyl hydrolase	98.69
PF01055		441	Glyco_hydro_31: Glycosyl hydrolases family 31 ; In	98.66
cd06595		292	GH31_xylosidase_XylS-like This family represents a	98.62
cd06594		317	GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl	98.58
cd06604		339	GH31_glucosidase_II_MalA Alpha-glucosidase II (alp	98.57
cd06597		340	GH31_transferase_CtsY CtsY (cyclic tetrasaccharide	98.55
cd06602		339	GH31_MGAM_SI_GAA This family includes the followin	98.54
cd06600		317	GH31_MGAM-like This family includes the following	98.46
cd06589		265	GH31 The enzymes of glycosyl hydrolase family 31 (	98.46
cd06601		332	GH31_lyase_GLase GLases (alpha-1,4-glucan lyases)	98.28
COG1501		772	Alpha-glucosidases, family 31 of glycosyl hydrolas	98.21
PLN02763		978	hydrolase, hydrolyzing O-glycosyl compounds	98.19
PF10566		273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	98.14
cd06603		339	GH31_GANC_GANAB_alpha This family includes the clo	98.11
KOG1065		805	consensus Maltase glucoamylase and related hydrola	97.44
PF13200		316	DUF4015: Putative glycosyl hydrolase domain	92.17
TIGR01515		613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	90.15
cd06596		261	GH31_CPE1046 CPE1046 is an uncharacterized Clostri	82.66

>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

Probab=100.00  E-value=4.8e-186  Score=1539.12  Aligned_cols=598  Identities=54%  Similarity=0.996  Sum_probs=563.6

Q ss_pred             cceeeecCCeEEEcCeecccCCCCceEEcccCCcccccccc-----------cccceeecccCCCCCcceeeeccccCcc
Q 006552           25 NIDITLEDSKLHANGHVFLSDVPDNVTLTPSTATATEKSVF-----------SNVGSFIGFDSFEPKSRHVVPIGKLKNI   93 (641)
Q Consensus        25 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~g~~~~~~~~~~~~~lG~~~~~   93 (641)
                      -..|+|+||+|+|+|+++|++||+||++||+++.+. ++++           ++.|+||||++++|+|||+++||+++++
T Consensus        21 ~~~~~l~~g~l~v~G~~~L~~Vp~NV~~tp~s~~~~-~~~~p~~~~~~~~~~~~~g~FlG~~~~~~~srhv~~lG~l~~~   99 (865)
T PLN02982         21 PNYFDLSDGKLSVKGVPLLSDVPNNVTFTPFSSISI-SSDAPLPLLQRVQSNSHKGGFLGFTKESPSDRLTNSLGKFEGR   99 (865)
T ss_pred             CceeEecCCeEEECCEEeecCCCCceEecCcccccc-cccCccccccccccccccceEEeeecCCCccceeeecccccCc
Confidence            458999999999999999999999999999888753 1222           2679999999999999999999999999


Q ss_pred             eeEEEeeecccccccccCCCCCCCCcccEEEEEEcCCCCCccEEEEEEeeeCCeEEEecCCCCCcEEEEEEcCCcccccc
Q 006552           94 RFMSIFRFKVWWTTHWVGSNGRDLENETQLVILDNSTDTGRPYVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGD  173 (641)
Q Consensus        94 r~~~l~R~k~~W~~p~~G~~~~~l~~etq~ll~~~~~~~~~~y~v~lp~~~~~~r~~L~~~~~~~~~i~~~sg~~~v~~~  173 (641)
                      |||||||||+||||||+|++|+|||.||||||+|.++  ...|+|||||++|+|||+||++++++++||+|||+++|+++
T Consensus       100 rFms~FRfK~WWmt~~vG~~G~Dip~ETQ~llle~~~--~~~Yvv~lP~ieG~FRa~Lqg~~~~~~~ic~ESg~~~V~~s  177 (865)
T PLN02982        100 DFLSIFRFKTWWSTMWIGSSGSDLQMETQWVLLKVPE--IDSYVLIIPLIEGSFRSALHPGEDGHVMICAESGSTKVKAS  177 (865)
T ss_pred             eEEeeeehhhhccchhhcCCCCCCChhheEEEEEcCC--CceEEEEEEecCCceEEEecCCCCCCEEEEEecCCcccccc
Confidence            9999999999999999999999999999999999997  36799999999999999999999999999999999999999


Q ss_pred             ccceEEEEEecCCHHHHHHHHHHHHHHhhCcCCCCCCCCCCCcccCcccccccccccccCHHHHHHHHHHHHhCCCCCcE
Q 006552          174 SFRSVVYVHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGL  253 (641)
Q Consensus       174 ~~~~~~~v~~g~dpf~~i~~A~~~v~~~~~tf~~~~~K~~P~~~d~~GWCTWdafy~~Vtee~V~~~l~~L~~~Gip~~~  253 (641)
                      ++.+++|||+|+|||++|++|++++++||+||++||+|++|.++|+||||||||||++||+++|++++++|+++|+||+|
T Consensus       178 ~~~~~~yvh~g~nPy~li~~a~~~v~~hl~TF~~~eeK~~P~~vd~FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~pprf  257 (865)
T PLN02982        178 SFNSIAYVHVSDNPYNLMKEAYSALRVHLNTFRLLEEKALPKIVDKFGWCTWDAFYLTVDPVGVWHGVKEFAEGGVPPRF  257 (865)
T ss_pred             ccceEEEEecCCCHHHHHHHHHHHHHHHhcccchhhhccCccccccceEEeechhhcccCHHHHHHHHHHHhcCCCCccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCcCCCCCCCCccccccccccCcCcccccCcccCCCCCCCCCCC-----------------------------
Q 006552          254 VLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPN-----------------------------  304 (641)
Q Consensus       254 vIIDDGWQ~~~~d~~~p~~~~~~~~~~~~~~~~rL~~~~~n~KFP~~~~~~-----------------------------  304 (641)
                      ||||||||++..|.++|.++.++++.+|+||++||++|+||+||++++++.                             
T Consensus       258 vIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~KFrky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~  337 (865)
T PLN02982        258 LIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEKFRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEK  337 (865)
T ss_pred             EEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhhhhccccccccCCCcccccccccchhhhcccchhhhhh
Confidence            999999999998765454555788999999999999999999999854410                             


Q ss_pred             ---------------------------------------------CCCCCCCCCHHHHHHHHHhhcCCccEEEEEeeccc
Q 006552          305 ---------------------------------------------GGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCG  339 (641)
Q Consensus       305 ---------------------------------------------~~~~~~~~GLk~lV~~Ik~~fg~lk~VgvWHAl~G  339 (641)
                                                                   +.+++.+.|||++|++||++|++||||||||||+|
T Consensus       338 ~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~G  417 (865)
T PLN02982        338 ARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESESSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCG  417 (865)
T ss_pred             cccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccC
Confidence                                                         01234557999999999999988999999999999


Q ss_pred             ccCccCCCCCCCCCCccccccCCCCCcccccchhhhcccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEcccchhh
Q 006552          340 YWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLE  419 (641)
Q Consensus       340 YWgGI~P~~~g~~~~s~l~~p~~spG~~~~~pd~a~~~~~~~Glglv~P~~a~~FYd~l~~~Las~GVDgVKvD~q~~l~  419 (641)
                      |||||+|+++.+  ++++++|+.+||+.++|||+|++++..+|+++++|+++++|||+||+||+++||||||||+|++++
T Consensus       418 YWGGV~P~~~~y--~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le  495 (865)
T PLN02982        418 AWGGVRPGTTHL--NAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGDFYDSMHSYLASVGITGVKVDVIHTLE  495 (865)
T ss_pred             cccCcCCCCCCC--cceEEecccCccccccCcchhhhheecCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHH
Confidence            999999987322  899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCChhhHHHHHHHHHHHHHHhccCCCceEeeccCCCccccc-ccccccccccccccccCCCCCCC---CCCcccc
Q 006552          420 ILCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLL-GTEAIALGRVGDDFWCTDPSGDP---NGTFWLQ  495 (641)
Q Consensus       420 ~l~~~~ggrv~l~~ay~~AL~~s~~r~F~g~~iI~CMs~~~~~l~~-~~~~~~~~R~SDDf~p~dp~~~p---~W~~~sh  495 (641)
                      ++++++|+|++++++||+||++|++|||++|++|+||||+++++|+ ++++++. |+||||||++|.++|   ||+|   
T Consensus       496 ~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~~~~~~~tk~sav~-R~SDDF~p~dP~shp~g~~wlq---  571 (865)
T PLN02982        496 YVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCNDFFFLGTKQISMG-RVGDDFWFQDPNGDPMGVYWLQ---  571 (865)
T ss_pred             HhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCchhhhccCCcceee-eccccccCCCCCcCcccccccc---
Confidence            9999999999999999999999999999999999999999998885 5677777 999999999999998   9997   


Q ss_pred             chhHHHhhhhhhcccCCCCCCCcccccCCcchHHHHHHHHHcCCcEEEecCCCCCChHHHhhhcCCCCceeeeccCCCcc
Q 006552          496 GCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPT  575 (641)
Q Consensus       496 ~~Hi~~~a~Nsl~~g~~~~PDwDMF~s~h~~a~~HaaaRaisGgPvyiSD~pg~hd~~lL~~LvlpdG~vlR~~~pg~pt  575 (641)
                      ++||++|||||||||+++|||||||||.||+|+|||++||||||||||||+||+|||+|||+||+|||+||||++||+||
T Consensus       572 ~~Hi~~~AyNSLl~G~~v~PDWDMFqS~H~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~pg~PT  651 (865)
T PLN02982        572 GVHMIHCAYNSMWMGQIIQPDWDMFQSDHLCAEFHAGSRAICGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHYALPT  651 (865)
T ss_pred             ceeeeehhhhhHhhccccccCchhccccCchHHHHHHHHhhcCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCceEEEEEeccccccccceeEEEEeecCCCCCCCCCC-------cceeEEEEEEEEcee
Q 006552          576 RDCLFADPLHDGKTMLKIWNLNKVCYWLWYHLIQTWTLCDGPDGHNPV-------ANFYYLIFATVHWSY  638 (641)
Q Consensus       576 ~d~lf~dp~~d~~~~Lkiwn~n~~~g~~~~~vig~F~N~~~~~~w~~~-------~~~~~~~~~~~~~~~  638 (641)
                      |||||.||++||+++|||||+|+++|     |||+| ||||+ |||+.       ++||++++++|+=++
T Consensus       652 rDcLF~DPl~DGks~LKIWN~Nk~~G-----ViG~F-NCQGa-gW~~~~~~~~~~~~~~~~vtg~v~~~D  714 (865)
T PLN02982        652 RDCLFKNPLFDKKTILKIWNFNKFGG-----VIGAF-NCQGA-GWDPKEHRIKGYSECYKPVSGSVHVSD  714 (865)
T ss_pred             cchhccCcccCCceEEEEEeccCcCc-----eEEEE-EeccC-CCCchhccccccCCCCcceEEEEcHHH
Confidence            99999999999999999999999999     99999 99999 99986       799999999998544

>PLN02711 Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>PLN02219 probable galactinol--sucrose galactosyltransferase 2	Back alignment and domain information

>PLN02684 Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>PLN02355 probable galactinol--sucrose galactosyltransferase 1	Back alignment and domain information

>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins	Back alignment and domain information

>PLN02692 alpha-galactosidase	Back alignment and domain information

>PLN02229 alpha-galactosidase	Back alignment and domain information

>PLN02808 alpha-galactosidase	Back alignment and domain information

>PLN03231 putative alpha-galactosidase; Provisional	Back alignment and domain information

>PLN02899 alpha-galactosidase	Back alignment and domain information

>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase	Back alignment and domain information

>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose	Back alignment and domain information

>PRK10658 putative alpha-glucosidase; Provisional	Back alignment and domain information

>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY	Back alignment and domain information

>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37	Back alignment and domain information

>PRK10426 alpha-glucosidase; Provisional	Back alignment and domain information

>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate	Back alignment and domain information

>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus	Back alignment and domain information

>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride	Back alignment and domain information

>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities	Back alignment and domain information

>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ	Back alignment and domain information

>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase	Back alignment and domain information

>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II	Back alignment and domain information

>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase	Back alignment and domain information

>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end	Back alignment and domain information

>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB)	Back alignment and domain information

>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF13200 DUF4015: Putative glycosyl hydrolase domain	Back alignment and domain information

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	Back alignment and domain information

>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		641
3cc1_A		433	BH1870 protein, putative alpha-N-acetylgalactosami	1e-04
1zy9_A		564	Alpha-galactosidase; TM1192, struc genomics, joint	2e-04

>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Length = 433	Back alignment and structure

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 211 KTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPG--LVLIDDGWQSISHDED 268
            TPP      GW +WD +  +V    V+   + + +     G   +++D  W   + +  
Sbjct: 10  LTPP-----MGWNSWDCYGASVTEEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSS 64

Query: 269 PIDSEG-INRTAAGEQMP 285
             +    +     G  +P
Sbjct: 65  AYNPFAPLCMDEYGRLLP 82

PyMOL of 3cc1

>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Length = 564	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		641
d1zy9a2		348	c.1.8.13 (A:178-525) Alpha-galactosidase GalA cata	5e-13
d1szna2		314	c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [T	2e-12
d1uasa2		273	c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [	4e-05
d1r46a2		292	c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens)	0.001
d1r46a2		292	c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens)	0.003
d1ktba2		293	c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallu	0.002
d1rr7a_		94	a.4.1.14 (A:) Middle operon regulator, Mor {Bacter	0.002

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 348	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Alpha-galactosidase GalA catalytic domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.6 bits (167), Expect = 5e-13
 Identities = 41/346 (11%), Positives = 84/346 (24%), Gaps = 68/346 (19%)

Query: 211 KTPPPIVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPPGLVLIDDGWQSISHDEDPI 270
           K  P      GWC+W  ++L +     ++ +K   +      +  IDD ++         
Sbjct: 4   KHTP-----TGWCSWYHYFLDLTWEETLKNLKLAKNFPF--EVFQIDDAYEK-------- 48

Query: 271 DSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKTVDQ 330
                                       D++        D   +    + + +       
Sbjct: 49  -------------------------DIGDWLV----TRGDFPSVEEMAKVIAENGFIP-G 78

Query: 331 VYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPEL 390
           ++           +    P    K               +  L               E 
Sbjct: 79  IWTAPFSVSETSDVFNEHPDWVVKENGEPKMAYRNWNKKIYAL----------DLSKDE- 127

Query: 391 VDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTASVRKHFKGN 450
           V      L S L K+G    K+D +    +  E     +   +A+ K +    +      
Sbjct: 128 VLNWLFDLFSSLRKMGYRYFKIDFLFAGAVPGE-RKKNITPIQAFRKGIETIRKAV---- 182

Query: 451 GVIASMEHCNDFMLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMG 510
           G  + +  C   +L     +   R+G D          +         + +         
Sbjct: 183 GEDSFILGCGSPLLPAVGCVDGMRIGPDTAPFWGEHIEDNGAPAARWALRNAITRYFMHD 242

Query: 511 NFIHPDWDMFQSTHPC-------AEFHAASRAISGGPIYVSDCVGK 549
            F   D D                E ++ +  +    I  SD +  
Sbjct: 243 RFWLNDPDCLILREEKTDLTQKEKELYSYTCGVLDNMIIESDDLSL 288

PyMOL of d1zy9a2

>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} Length = 314	Back information, alignment and structure

>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Length = 273	Back information, alignment and structure

>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure

>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure

>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 293	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		641
d1szna2		314	Melibiase {Trichoderma reesei [TaxId: 51453]}	100.0
d1uasa2		273	Melibiase {Rice (Oryza sativa) [TaxId: 4530]}	100.0
d1r46a2		292	Melibiase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1zy9a2		348	Alpha-galactosidase GalA catalytic domain {Thermot	100.0
d1ktba2		293	Melibiase {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d2f2ha4		338	Putative glucosidase YicI, domain 2 {Escherichia c	99.47
d1g5aa2		554	Amylosucrase {Neisseria polysaccharea [TaxId: 489]	92.26
d1gcya2		357	G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase	88.93
d1ua7a2		344	Bacterial alpha-amylase {Bacillus subtilis [TaxId:	86.72
d2bhua3		420	Glycosyltrehalose trehalohydrolase, central domain	83.23

>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Trichoderma reesei [TaxId: 51453]

Probab=100.00  E-value=3.5e-43  Score=290.47  Aligned_cols=276  Identities=14%  Similarity=0.135  Sum_probs=199.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             75323411122356987899999987849999---93899806888767999988754653233467676444575348-
Q 006552          219 KFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCP---PGLVLIDDGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRYQEN-  294 (641)
Q Consensus       219 ~~GWCTWdafy~~Vtee~I~~~l~~L~~~Gip---~~~vIIDDGWQ~~~~d~~~~~~~~~~~~~~~~~~~~rL~~~~~n-  294 (641)
                      .||||||++||++|||+.|++.++.|++.|+.   .++++||||||...++.                    +.+|.++ 
T Consensus        13 p~GwnSW~~~~~~i~e~~i~~~a~~l~e~gl~~~G~~~~~iDdGW~~~~~~~--------------------~G~~~~d~   72 (314)
T d1szna2          13 SLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRV--------------------DGHIAPNA   72 (314)
T ss_dssp             CEEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCB--------------------TTBCCBCT
T ss_pred             CCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC--------------------CCCEEECH
T ss_conf             9865646502653899999999999997686025967999888856889998--------------------99842587


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             77899999999999999877999999976159954899983114666765789999998751013678999632342001
Q 006552          295 FKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKTVDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTMEDLA  374 (641)
Q Consensus       295 ~KFP~~~~~~~~~~~~~~GLk~lV~~Ik~~~g~ik~VgvWHAl~GYWgGI~P~~~g~~~~s~l~~p~~spG~~~~~pd~a  374 (641)
                      +|||             +|||+++++||++ | +| +|+|+++..+++..+|+....+ ..                +..
T Consensus        73 ~kFP-------------~Gl~~~~~~i~~~-G-~k-~Giw~~p~~~~~~~~p~~~~~~-~~----------------~~~  119 (314)
T d1szna2          73 TRFP-------------DGIDGLAKKVHAL-G-LK-LGIYSTAGTATCAGYPASLGYE-DV----------------DAA  119 (314)
T ss_dssp             TTCT-------------THHHHHHHHHHHT-T-CE-EEEEEESSSBCTTSCBCCTTCH-HH----------------HHH
T ss_pred             HHCC-------------CCHHHHHHHHHHC-C-CE-EEEEECCCCCCCCCCCCCCCCC-CC----------------CHH
T ss_conf             6557-------------8608899988746-9-75-7776324444567886300345-53----------------355


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             0021027778889899999999999999780997999926411444320------2698004899999999999983148
Q 006552          375 VDKIVNNGVGFVPPELVDQMYEGLHSHLEKVGIDGVKVDVIHLLEILCE------NYGGRVDLAKAYYKALTASVRKHFK  448 (641)
Q Consensus       375 ~~~~~~~G~glv~p~~v~~FYd~l~~~Las~GVDgVKvD~q~~l~~l~~------~~g~rv~l~~ay~~AL~~si~r~F~  448 (641)
                        .....|+++..| +++.+++.++..++++||||+|+|.+........      .+..........+.++.+++.+..+
T Consensus       120 --~~~~~~~d~~~~-d~~~~~~~~~~~~~~~g~d~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (314)
T d1szna2         120 --DFADWGVDYLKY-DNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNALAKQSH  196 (314)
T ss_dssp             --HHHHTTCCEEEE-ECCCCCGGGSCSSBCCCTTTSCCBGGGBCCTTTCTTBCCTTCCGGGSHHHHHHHHHHHHHHTSSS
T ss_pred             --HHHHCCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             --665317766562-38778999999999829866975156441001476667445675144578889999999987179


Q ss_pred             CCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--
Q ss_conf             98168502677731-112333321001236556689999999874543046888643210025887789742434786--
Q 006552          449 GNGVIASMEHCNDF-MLLGTEAIALGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHP--  525 (641)
Q Consensus       449 g~~iI~CMs~~~~~-l~~~~~~~~~~R~SDDf~p~dp~~~p~W~q~sh~~Hi~~~a~Nsl~~g~~~~PDwDMF~s~h~--  525 (641)
                      +..+..||++.... .+.....+++ |+|+|+++.+.        .. ..++..+++++.+.+...|+|+||++..+.  
T Consensus       197 ~~~i~~c~~~~~~~~~~~~~~~~~~-R~s~D~~~~w~--------~~-~~~~~~~~~~~~~~~~~~~~DpDml~~g~~~l  266 (314)
T d1szna2         197 EIVLSMCIWGQADVFSWGNSTGISW-RMSDDISPNWG--------SV-TRILNLNSFKLNSVDFWGHNDADMLEVGNGNL  266 (314)
T ss_dssp             CCEEEECCTTGGGHHHHGGGTCSEE-ECSSCCCSSHH--------HH-HHHHHHHHTCGGGCBTTBEEECCSCCTTCTTC
T ss_pred             CEEEEECCCCCCCCHHHHHHCCCCE-EECCCCCCCCC--------HH-HHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
T ss_conf             9689856788887202665325515-52588655630--------49-99999998877874687668930106689899


Q ss_pred             ---CHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCC
Q ss_conf             ---34799999987099678741889998677731108
Q 006552          526 ---CAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSM  560 (641)
Q Consensus       526 ---~a~~HaaaRaisGgPvyiSD~pg~hd~~lL~~Lvl  560 (641)
                         +.++|++++|++|+|+++||++.+.+-+.+.-|+.
T Consensus       267 t~~e~r~~~sl~a~~~~pl~~g~dl~~~~~~~~~ll~N  304 (314)
T d1szna2         267 TAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKN  304 (314)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHCC
T ss_conf             99999999999999847213068800199999988609

PyMOL of d1szna2

>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}	Back information, alignment and structure

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}	Back information, alignment and structure

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure