Citrus Sinensis ID: 006592
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C671 | 630 | Probable phosphatidylinos | no | no | 0.978 | 0.992 | 0.633 | 0.0 | |
| Q8TCG2 | 481 | Phosphatidylinositol 4-ki | yes | no | 0.344 | 0.457 | 0.261 | 7e-11 | |
| Q5ZIK0 | 479 | Phosphatidylinositol 4-ki | yes | no | 0.350 | 0.467 | 0.234 | 7e-11 | |
| Q5XIL2 | 477 | Phosphatidylinositol 4-ki | yes | no | 0.344 | 0.461 | 0.268 | 1e-10 | |
| Q8CBQ5 | 469 | Phosphatidylinositol 4-ki | yes | no | 0.355 | 0.484 | 0.253 | 2e-10 | |
| Q505I0 | 471 | Phosphatidylinositol 4-ki | yes | no | 0.458 | 0.622 | 0.241 | 8e-10 | |
| Q49GP5 | 501 | Phosphatidylinositol 4-ki | yes | no | 0.381 | 0.487 | 0.239 | 1e-09 | |
| Q6PE18 | 447 | Phosphatidylinositol 4-ki | no | no | 0.344 | 0.492 | 0.243 | 6e-09 | |
| Q08B31 | 469 | Phosphatidylinositol 4-ki | N/A | no | 0.342 | 0.466 | 0.256 | 7e-09 | |
| Q9BTU6 | 479 | Phosphatidylinositol 4-ki | no | no | 0.341 | 0.455 | 0.245 | 1e-08 |
| >sp|Q9C671|P4K2B_ARATH Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1 | Back alignment and function desciption |
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Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/644 (63%), Positives = 483/644 (75%), Gaps = 19/644 (2%)
Query: 1 MSHNWDCPVNTQMAVAAFRGGINGEHGGSKRMESQHS-GKRRVFVQTEMGYVLGMELDRS 59
MS D P+ TQMAVA + +NGE ++ + G+RRVFVQTE G VLG+ELDRS
Sbjct: 1 MSRKLDSPIKTQMAVALVKSPLNGEFREFNKVGMKTPVGRRRVFVQTETGCVLGLELDRS 60
Query: 60 DNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTRNCMHRSSSTPCLS 119
DNAHTVKRKLQ+AL+ P EE SL +GD VLKNDL+ VR DSPLLLTRN HRSSSTPCLS
Sbjct: 61 DNAHTVKRKLQVALNFPIEESSLTFGDLVLKNDLTAVRSDSPLLLTRNNFHRSSSTPCLS 120
Query: 120 PTGKDLQER-DLSGPIEILGYSNHFSTAKQLVKEIVKAMKKGIDPIPVHSGLGGAYYFRN 178
P DLQ+R D S PIEILG S FS +Q+ K+I KA+KKGIDP+ V+SGLGGAYYF+N
Sbjct: 121 PMRADLQQRRDESSPIEILGNSVSFSFVRQMAKDITKAVKKGIDPVAVNSGLGGAYYFKN 180
Query: 179 CAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLDYDHFA 238
GE+VAIVKPTDEEPYAPNNPKGFVG ALGQPGLKRSVRVGETG+REVAAYLLD +HFA
Sbjct: 181 SRGESVAIVKPTDEEPYAPNNPKGFVGKALGQPGLKRSVRVGETGYREVAAYLLDKEHFA 240
Query: 239 NVPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTSSFPVAA 298
NVP TALVK+TH IFN+N+GV +K ++ VSKIASLQQFIPHD+DAS+HGTS+FPV+A
Sbjct: 241 NVPPTALVKITHSIFNVNDGVKASKPMEKMLVSKIASLQQFIPHDYDASEHGTSNFPVSA 300
Query: 299 VHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHW 358
VHRIGILDIRILNTDRH+GNLLVKK +G G FGQVELVPIDHGLCLPE LEDPYFEWIHW
Sbjct: 301 VHRIGILDIRILNTDRHSGNLLVKKLDGDGMFGQVELVPIDHGLCLPETLEDPYFEWIHW 360
Query: 359 AQASIPFSEDELEYINQLDPFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLA 418
QASIPFSEDEL+YI LDP GD MLR ELPM+REA LRVLV+CTIFLKEAAA GLCLA
Sbjct: 361 PQASIPFSEDELKYIANLDPLGDCEMLRRELPMVREASLRVLVLCTIFLKEAAANGLCLA 420
Query: 419 DIGEMMSREFRGHAEAPSELEFICIEARRLLEESKPLFDHVKAGDNEEFQFEIDCEEREF 478
+IGEMM+RE R E PSE+E +C+EA L+ E G++ EFQF+IDCEE
Sbjct: 421 EIGEMMTREVRPGDEEPSEIEVVCLEAMSLIGEKDAESPRSDLGNDIEFQFDIDCEE--- 477
Query: 479 DLTLNMEEKLSSKCLSSGSKGVNGQNSLYRLEESVEEEGENEGNVTPLCLEDSAPPVWHM 538
+ +KL+ L G N + L ++EE+ E+ E E D A
Sbjct: 478 --VTDCTKKLA---LPLGLTFGNARGQLSKVEETTEDGEEEEEEDREEEENDRAD--LEK 530
Query: 539 GPSFSKLSVSLKNITIGEKS---WRHEGTMQKNGYLAGTSSGNMSVHEHLPASTSFVKLA 595
P+ KLS+SLK+ +GEKS +H G ++ Y SS + S E +P+STSFVKL+
Sbjct: 531 MPTI-KLSMSLKSTLLGEKSQKYQKHPGARVESAY---ASSAHRSADEQIPSSTSFVKLS 586
Query: 596 DMNEEEWAQYLEKFQKLLYPAFTNHKSVSVGQRQKQRLGASCQF 639
DM+EEEW +LEK+Q+LLYPA KS+++GQ+Q+QRLG SCQF
Sbjct: 587 DMSEEEWTIFLEKYQELLYPAIEKRKSITLGQKQRQRLGTSCQF 630
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The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3). Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6EC: 7 |
| >sp|Q8TCG2|P4K2B_HUMAN Phosphatidylinositol 4-kinase type 2-beta OS=Homo sapiens GN=PI4K2B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5ZIK0|P4K2B_CHICK Phosphatidylinositol 4-kinase type 2-beta OS=Gallus gallus GN=PI4K2B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5XIL2|P4K2B_RAT Phosphatidylinositol 4-kinase type 2-beta OS=Rattus norvegicus GN=Pi4k2b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8CBQ5|P4K2B_MOUSE Phosphatidylinositol 4-kinase type 2-beta OS=Mus musculus GN=Pi4k2b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q505I0|P4K2A_XENTR Phosphatidylinositol 4-kinase type 2-alpha OS=Xenopus tropicalis GN=pi4k2a PE=2 SV=2 | Back alignment and function description |
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| >sp|Q49GP5|P4K2B_DANRE Phosphatidylinositol 4-kinase type 2-beta OS=Danio rerio GN=pi4k2b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PE18|P4K2A_DANRE Phosphatidylinositol 4-kinase type 2-alpha OS=Danio rerio GN=pi4k2a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q08B31|P4K2A_XENLA Phosphatidylinositol 4-kinase type 2-alpha OS=Xenopus laevis GN=pi4k2a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9BTU6|P4K2A_HUMAN Phosphatidylinositol 4-kinase type 2-alpha OS=Homo sapiens GN=PI4K2A PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| 225424995 | 640 | PREDICTED: probable phosphatidylinositol | 0.995 | 0.993 | 0.707 | 0.0 | |
| 225451844 | 633 | PREDICTED: probable phosphatidylinositol | 0.989 | 0.998 | 0.707 | 0.0 | |
| 224111846 | 640 | predicted protein [Populus trichocarpa] | 0.996 | 0.995 | 0.683 | 0.0 | |
| 449458063 | 645 | PREDICTED: probable phosphatidylinositol | 0.985 | 0.976 | 0.689 | 0.0 | |
| 356568847 | 638 | PREDICTED: probable phosphatidylinositol | 0.995 | 0.996 | 0.683 | 0.0 | |
| 356526569 | 638 | PREDICTED: probable phosphatidylinositol | 0.995 | 0.996 | 0.684 | 0.0 | |
| 255547049 | 647 | inositol or phosphatidylinositol kinase, | 0.998 | 0.986 | 0.686 | 0.0 | |
| 225455728 | 629 | PREDICTED: probable phosphatidylinositol | 0.971 | 0.987 | 0.673 | 0.0 | |
| 449434706 | 645 | PREDICTED: probable phosphatidylinositol | 0.987 | 0.978 | 0.663 | 0.0 | |
| 301558003 | 641 | phosphatidylinositol 4-kinase [Gossypium | 0.987 | 0.984 | 0.677 | 0.0 |
| >gi|225424995|ref|XP_002267025.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 isoform 1 [Vitis vinifera] gi|147838249|emb|CAN76598.1| hypothetical protein VITISV_005885 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/643 (70%), Positives = 523/643 (81%), Gaps = 7/643 (1%)
Query: 1 MSHNWDCPVNTQMAVAAFRGGINGEHGGSKRME-SQHSGKRRVFVQTEMGYVLGMELDRS 59
MS N D PV TQMAVA F+ ++GE+ SKRME Q +G+RRVFVQTE G VLGM+LDR
Sbjct: 1 MSPNLDSPVQTQMAVAVFKSPLSGEYHRSKRMEGKQPAGRRRVFVQTETGCVLGMDLDRG 60
Query: 60 DNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTRNCMHRSSSTPCLS 119
DNAHTVKR+LQLA +VPTEE SL +GD VLKNDLS VR+DSPLLLTRN +HRSSSTPCLS
Sbjct: 61 DNAHTVKRRLQLAFNVPTEESSLTFGDMVLKNDLSAVRNDSPLLLTRNFLHRSSSTPCLS 120
Query: 120 PTGKDLQERDLSGPIEILGYSNHFSTAKQLVKEIVKAMKKGIDPIPVHSGLGGAYYFRNC 179
PTGKD+Q+RD SGPIEILG+SN F+ KQLVK+IVKA+K G+DPIPVHSGLGGAYYFRN
Sbjct: 121 PTGKDIQQRDQSGPIEILGHSNQFARTKQLVKDIVKAIKIGVDPIPVHSGLGGAYYFRNS 180
Query: 180 AGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLDYDHFAN 239
GE+VAIVKPTDEEP+APNNPKGFVG ALGQPGLKR+VRVGETGFREVAAYLLDYDHFAN
Sbjct: 181 RGESVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKRTVRVGETGFREVAAYLLDYDHFAN 240
Query: 240 VPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTSSFPVAAV 299
VP TALVK+TH IFN+N+GVNGNK +++QVSKIAS QQFIPHDFDASDHGTSSFPVAAV
Sbjct: 241 VPPTALVKITHSIFNVNDGVNGNKPHQKEQVSKIASFQQFIPHDFDASDHGTSSFPVAAV 300
Query: 300 HRIGILDIRILNTDRHAGNLLVKKF-EGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHW 358
HRIGILDIRILNTDRHAGNLLV+K + G F QVEL+PIDHGLCLPE+LEDPYFEWIHW
Sbjct: 301 HRIGILDIRILNTDRHAGNLLVRKLNDSAGRFAQVELIPIDHGLCLPESLEDPYFEWIHW 360
Query: 359 AQASIPFSEDELEYINQLDPFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLA 418
QASIPFSEDELEYI LD DS MLR+ELPMIREACLRVLV+CTIFLKEAAAFGLCLA
Sbjct: 361 PQASIPFSEDELEYIKNLDSIRDSEMLRMELPMIREACLRVLVLCTIFLKEAAAFGLCLA 420
Query: 419 DIGEMMSREFRGHAEAPSELEFICIEARRLLEESKPLFDHVKAGDNEEFQFEIDCEEREF 478
+IGEMMSREFRG E PSELEF+C+EARRL+ E + L + G+ E FQF++DCEE F
Sbjct: 421 EIGEMMSREFRGGEEEPSELEFVCLEARRLIAEREVLSPKAEGGE-EVFQFDMDCEEDRF 479
Query: 479 DLTLNM--EEKLSSKCLSSGSKGVNGQNSLYRLEESVEEEGENEGNVTPLCLEDSAPPVW 536
T M + ++ L G G NG+ L +LEES+EEE E+E + + P
Sbjct: 480 YFTPKMGADAFMNRGPLHFGIGGANGRFQLSKLEESIEEEEESEREGE--QEDFAGIPTP 537
Query: 537 HMGPSFSKLSVSLKNITIGEKSWRHEGTMQKNGYLAGTSSGNMSVHEHLPASTSFVKLAD 596
+ SKLS+SLK+ ++GEKS ++ ++ YLA TSSG+ S +E LP S SFVKLAD
Sbjct: 538 AEVSTISKLSMSLKDTSLGEKSQKYLEAKPESSYLANTSSGHRSANEQLPTSMSFVKLAD 597
Query: 597 MNEEEWAQYLEKFQKLLYPAFTNHKSVSVGQRQKQRLGASCQF 639
MNEEEW +LEKFQ+LLYPAF KSV++GQRQ+QRLG SCQF
Sbjct: 598 MNEEEWVLFLEKFQELLYPAFAKRKSVTLGQRQRQRLGTSCQF 640
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451844|ref|XP_002281918.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224111846|ref|XP_002316001.1| predicted protein [Populus trichocarpa] gi|222865041|gb|EEF02172.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449458063|ref|XP_004146767.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Cucumis sativus] gi|449523902|ref|XP_004168962.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356568847|ref|XP_003552619.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356526569|ref|XP_003531889.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like isoform 1 [Glycine max] gi|356526571|ref|XP_003531890.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255547049|ref|XP_002514582.1| inositol or phosphatidylinositol kinase, putative [Ricinus communis] gi|223546186|gb|EEF47688.1| inositol or phosphatidylinositol kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225455728|ref|XP_002267822.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449434706|ref|XP_004135137.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like isoform 1 [Cucumis sativus] gi|449434708|ref|XP_004135138.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|301558003|gb|ADK78996.1| phosphatidylinositol 4-kinase [Gossypium barbadense] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| TAIR|locus:2056799 | 650 | PI4K GAMMA 7 "AT2G03890" [Arab | 0.989 | 0.972 | 0.611 | 3.7e-206 | |
| TAIR|locus:2028798 | 630 | AT1G26270 "AT1G26270" [Arabido | 0.743 | 0.753 | 0.714 | 1e-204 | |
| TAIR|locus:2023865 | 622 | AT1G13640 "AT1G13640" [Arabido | 0.946 | 0.972 | 0.604 | 5.1e-193 | |
| TAIR|locus:2102604 | 536 | AT3G56600 [Arabidopsis thalian | 0.571 | 0.680 | 0.507 | 1.6e-96 | |
| TAIR|locus:2058485 | 561 | PI4K GAMMA 1 "AT2G40850" [Arab | 0.569 | 0.648 | 0.494 | 3.4e-94 | |
| TAIR|locus:2169774 | 574 | AT5G24240 [Arabidopsis thalian | 0.425 | 0.473 | 0.438 | 5.4e-57 | |
| TAIR|locus:2039064 | 566 | PI4K GAMMA 4 "phosphoinositide | 0.514 | 0.581 | 0.364 | 9.9e-52 | |
| TAIR|locus:2019419 | 301 | AT1G64460 [Arabidopsis thalian | 0.378 | 0.803 | 0.439 | 7.7e-48 | |
| DICTYBASE|DDB_G0291370 | 401 | DDB_G0291370 "phosphatidylinos | 0.428 | 0.683 | 0.381 | 2.8e-41 | |
| WB|WBGene00008346 | 402 | C56A3.8 [Caenorhabditis elegan | 0.397 | 0.631 | 0.261 | 8.3e-11 |
| TAIR|locus:2056799 PI4K GAMMA 7 "AT2G03890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1994 (707.0 bits), Expect = 3.7e-206, P = 3.7e-206
Identities = 402/657 (61%), Positives = 482/657 (73%)
Query: 1 MSHNWDCPVNTQMAVAAFRGGING-------EHGGSKRMESQHSGKRRVFVQTEMGYVLG 53
MS N D PV TQMAVA F+ + G +H + ++ Q SG RRVFVQTE G VLG
Sbjct: 1 MSRNLDSPVQTQMAVAVFKTPLTGASKMEGKQHHKHQHLQRQSSG-RRVFVQTETGCVLG 59
Query: 54 MELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTRNCMHRSS 113
MELDRSDN HTVKR+LQ+AL+ PTEE SL YGD VL NDLS VR+DSPLLL RN MHRSS
Sbjct: 60 MELDRSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSAVRNDSPLLLKRNFMHRSS 119
Query: 114 STPCLSPTGKDLQERDLSGPIEILGYSNHFSTAKQLVKEIVKAMKKGIDPIPVHSGLGGA 173
STPCLSPTG+DLQ++D SGPIEILG+S+ FS K +VK+IVKAMK G++P+PVHSGLGGA
Sbjct: 120 STPCLSPTGRDLQQKDRSGPIEILGHSDCFSIVKHMVKDIVKAMKMGVEPLPVHSGLGGA 179
Query: 174 YYFRNCAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLD 233
YYFRN GE+VAIVKPTDEEP+APNNPKGFVG ALGQPGLK SVRVGETGFREVAAYLLD
Sbjct: 180 YYFRNKRGESVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKSSVRVGETGFREVAAYLLD 239
Query: 234 YDHFANVPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTSS 293
Y FANVP TALVK+TH +FN+N+GV GNK R++K VSKIAS Q+F+ HDFDASDHGTSS
Sbjct: 240 YGRFANVPPTALVKITHSVFNVNDGVKGNKPREKKLVSKIASFQKFVAHDFDASDHGTSS 299
Query: 294 FPVAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYF 353
FPV +VHRIGILDIRI NTDRH GNLLVKK +G G FGQVEL+PIDHGLCLPE LEDPYF
Sbjct: 300 FPVTSVHRIGILDIRIFNTDRHGGNLLVKKLDGVGMFGQVELIPIDHGLCLPETLEDPYF 359
Query: 354 EWIHWAQASIPFSEDELEYINQLDPFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAF 413
EWIHW QAS+PFS++E++YI LDP D MLR ELPMIREACLRVLV+CTIFLKEA+A+
Sbjct: 360 EWIHWPQASLPFSDEEVDYIQSLDPVKDCDMLRRELPMIREACLRVLVLCTIFLKEASAY 419
Query: 414 GLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEESKPLFDHVKAGDNEEFQFEIDC 473
GLCLA+IGEMM+REFR E PSELE +CIEA+R + E EFQF++DC
Sbjct: 420 GLCLAEIGEMMTREFRPGEEEPSELEVVCIEAKRSVTERDVFSPRSDVVGEAEFQFDLDC 479
Query: 474 EEREFDLTLNMEEXXXXXXXXXXXXXVNGQNSLYRLXXXXXXXXXX-------XXXXTPL 526
++ E ++ + NG++SL +L P+
Sbjct: 480 DDLE---SVYSSKIQLTDDYFTKNPFSNGRSSLGKLEESIKEEEEDEEEEEDKTENTVPM 536
Query: 527 CL-EDS--APPVWH-MGPSFSKLSVSLKNITIGEKSWRHEGTMQKNGYLAGTSSGNMSVH 582
+ +DS + +H PS SKLS S+KN + + + ++ + + G TSSG+ S +
Sbjct: 537 IIMKDSFFSSAAFHDKAPSLSKLSTSMKNTHLSDTTRKNPKPLTR-GKSENTSSGHKSAN 595
Query: 583 EHLPASTSFVKLADMNEEEWAQYLEKFQKLLYPAFTNHKSVSVGQRQKQRLGASCQF 639
E LP S SFVK+ADM E+EW +LE+FQ+LL PAF K+ ++ +RQ RLG SCQF
Sbjct: 596 EQLPVSASFVKVADMKEDEWVLFLERFQELLGPAFAKRKTATLSKRQ--RLGTSCQF 650
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| TAIR|locus:2028798 AT1G26270 "AT1G26270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2023865 AT1G13640 "AT1G13640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2102604 AT3G56600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2058485 PI4K GAMMA 1 "AT2G40850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169774 AT5G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039064 PI4K GAMMA 4 "phosphoinositide 4-kinase gamma 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2019419 AT1G64460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0291370 DDB_G0291370 "phosphatidylinositol 3-kinase-related protein kinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| WB|WBGene00008346 C56A3.8 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.1.67 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021148001 | SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_22, whole genome shotgun sequence); (640 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 639 | |||
| pfam00454 | 233 | pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- | 7e-42 |
| >gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 7e-42
Identities = 66/236 (27%), Positives = 88/236 (37%), Gaps = 45/236 (19%)
Query: 212 GLKRSVRVGETGFREVAAYLLDY--------------DHFANVPCTALVKVTHEIFNINN 257
GL + GE R +AAYL+ A +P T +VK +FN +
Sbjct: 23 GLMNKLLSGEGLDRRLAAYLVIPLGPGSGLIEWVPNSTTLAEIPRTYMVKKGIPLFNYSR 82
Query: 258 GVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTS-SFPVAAVHRIGILDIRILNTDRHA 316
V + R K+ LQ F+ H DA + G + V + + +LD + N DRH
Sbjct: 83 KVLVFESRT-ALFPKVGLLQWFVKHFPDAEEWGEARKNFVRSCAGMSVLDYILGNGDRHL 141
Query: 317 GNLLVKKFEGTGSFGQVELVPIDHGLCLP-----ENLEDPYFEWIHWAQASIPFSEDELE 371
N+LV K G +L ID GLC P E F PF E
Sbjct: 142 DNILVDKTTG-------KLFHIDFGLCFPKAKRGPKPERVPFRLTR------PFVEAMGG 188
Query: 372 YINQLDPFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSRE 427
Y DP GD G+ R EA R L + T L L + + G R
Sbjct: 189 Y----DPSGDEGLFRELCETAYEALRRNLNLLTNLL-------LLMVEDGLPDWRS 233
|
Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| KOG2381 | 286 | consensus Phosphatidylinositol 4-kinase [Signal tr | 100.0 | |
| TIGR03843 | 253 | conserved hypothetical protein. This model represe | 100.0 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 99.6 | |
| KOG0005 | 70 | consensus Ubiquitin-like protein [Cell cycle contr | 99.57 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 99.57 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 99.57 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 99.56 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 99.55 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 99.55 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 99.51 | |
| KOG0003 | 128 | consensus Ubiquitin/60s ribosomal protein L40 fusi | 99.48 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 99.48 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 99.47 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 99.46 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 99.46 | |
| KOG0004 | 156 | consensus Ubiquitin/40S ribosomal protein S27a fus | 99.46 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 99.45 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 99.45 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 99.43 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 99.41 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 99.39 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 99.37 | |
| cd01790 | 79 | Herp_N Homocysteine-responsive endoplasmic reticul | 99.29 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 99.25 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 99.24 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 99.24 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 99.15 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 99.07 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 99.05 | |
| PF00454 | 235 | PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina | 99.04 | |
| cd01815 | 75 | BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC | 98.99 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 98.98 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 98.98 | |
| KOG0010 | 493 | consensus Ubiquitin-like protein [Posttranslationa | 98.91 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 98.75 | |
| KOG0001 | 75 | consensus Ubiquitin and ubiquitin-like proteins [P | 98.7 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 98.64 | |
| cd01814 | 113 | NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT | 98.58 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 98.38 | |
| KOG0011 | 340 | consensus Nucleotide excision repair factor NEF2, | 98.33 | |
| PLN02560 | 308 | enoyl-CoA reductase | 98.12 | |
| KOG4248 | 1143 | consensus Ubiquitin-like protein, regulator of apo | 98.11 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 98.1 | |
| KOG3829 | 486 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| cd00196 | 69 | UBQ Ubiquitin-like proteins. Ubiquitin homologs; I | 97.62 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 97.33 | |
| cd01788 | 119 | ElonginB Ubiquitin-like domain of Elongin B. Elong | 97.14 | |
| cd01801 | 77 | Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- | 97.07 | |
| PF13881 | 111 | Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB | 97.02 | |
| KOG0006 | 446 | consensus E3 ubiquitin-protein ligase (Parkin prot | 96.39 | |
| PF07804 | 79 | HipA_C: HipA-like C-terminal domain; InterPro: IPR | 96.29 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 96.09 | |
| cd01811 | 80 | OASL_repeat1 2'-5' oligoadenylate synthetase-like | 95.39 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 95.13 | |
| PF06702 | 221 | DUF1193: Protein of unknown function (DUF1193); In | 94.3 | |
| cd05168 | 293 | PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T | 92.48 | |
| KOG1769 | 99 | consensus Ubiquitin-like proteins [Posttranslation | 92.37 | |
| cd00893 | 289 | PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I | 92.13 | |
| PF11470 | 65 | TUG-UBL1: GLUT4 regulating protein TUG; InterPro: | 91.39 | |
| PF13019 | 162 | Telomere_Sde2: Telomere stability and silencing | 91.01 | |
| cd00895 | 354 | PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl | 90.76 | |
| PF10302 | 97 | DUF2407: DUF2407 ubiquitin-like domain; InterPro: | 90.07 | |
| KOG4495 | 110 | consensus RNA polymerase II transcription elongati | 89.93 | |
| cd05167 | 311 | PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), | 89.24 | |
| KOG0903 | 847 | consensus Phosphatidylinositol 4-kinase, involved | 87.3 | |
| cd05177 | 354 | PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c | 86.03 | |
| cd00891 | 352 | PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic | 83.59 | |
| cd05166 | 353 | PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I | 82.76 | |
| cd05176 | 353 | PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c | 80.97 | |
| cd00894 | 365 | PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c | 80.56 | |
| KOG0013 | 231 | consensus Uncharacterized conserved protein [Funct | 80.25 |
| >KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-69 Score=550.37 Aligned_cols=283 Identities=48% Similarity=0.724 Sum_probs=259.9
Q ss_pred HHHHHHHHcCCCCcccccccceEEEEEeCCCCeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchh-hhhh
Q 006592 151 KEIVKAMKKGIDPIPVHSGLGGAYYFRNCAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFR-EVAA 229 (639)
Q Consensus 151 ~~v~~ai~~G~~P~~i~~GSgGsYf~~n~~Gk~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krGtlvGe~a~R-EVAA 229 (639)
.++..|++.|+.|.+++.|++|+|||++..|..+|||||+|||||++|||+|......|+||+++||++||+|+| |+||
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~aa 81 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGWIVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAAA 81 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccceeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhhh
Confidence 567889999999999999999999999999988999999999999999999977777788999999999999998 9999
Q ss_pred hhhcCCCCCCCCcceEEEeeccccccCCCCCcccccccCCCCccceeeecccCCCCCCCCCCCCCChhhhhhccccceEe
Q 006592 230 YLLDYDHFANVPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTSSFPVAAVHRIGILDIRI 309 (639)
Q Consensus 230 YLLD~~gf~~VP~T~lV~~~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~a~d~g~~~F~v~evhKIaILDiri 309 (639)
|||||++|+.||+|.+|+++|+.||+++....+.... ..|+||+|+||++ +++.|+++.+|++++||||+||||||
T Consensus 82 yLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~---~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~hkivvlD~ri 157 (286)
T KOG2381|consen 82 YLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQGK---KSKIGSLQLFVEG-YSAADYGLRRFEAEEVHKIVVLDIRI 157 (286)
T ss_pred hccCccccCCCCceeeEEEeeecccccccceeccccc---ccchhhHHHhhcC-ccccceeEEeccccccceeEEEEEEe
Confidence 9999999999999999999999999998754332211 2799999999999 89999999999999999999999999
Q ss_pred ecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHhcCCcccchhHHHhhC
Q 006592 310 LNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQLDPFGDSGMLRLEL 389 (639)
Q Consensus 310 ~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~LD~~~D~~~Lr~~L 389 (639)
+|||||+|||||++.+..+ .-...+|||||||.+|+|+||+|++||||..|||+++++|| ||+..|+++||
T Consensus 158 ~NtDRh~~N~lvk~~~~~~----~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~~~r--- 228 (286)
T KOG2381|consen 158 RNTDRHAGNWLVKKEPTLE----QAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCNLLR--- 228 (286)
T ss_pred eccCCCCCceeEEeccCcc----cccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHHHHH---
Confidence 9999999999999965322 23455699999999999999999999999999999999999 99999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCCCCCCChHHHHHHHHHHHHhh
Q 006592 390 PMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEE 451 (639)
Q Consensus 390 ~~lre~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~i~~~A~~~~~~ 451 (639)
++.++|+|+++++|+|+|++++.|||+.+||.+|+|++..+ |.+|.+|.+|.+.+.+
T Consensus 229 -~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~----~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 229 -ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD----SKLEQLCVEAKASVVE 285 (286)
T ss_pred -HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh----CccHHHHHhhhhcccC
Confidence 45799999999999999999999999999999999999754 9999999999877654
|
|
| >TIGR03843 conserved hypothetical protein | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
| >cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PLN02560 enoyl-CoA reductase | Back alignment and domain information |
|---|
| >KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >KOG3829 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd00196 UBQ Ubiquitin-like proteins | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01788 ElonginB Ubiquitin-like domain of Elongin B | Back alignment and domain information |
|---|
| >cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 | Back alignment and domain information |
|---|
| >PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A | Back alignment and domain information |
|---|
| >KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2 | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly | Back alignment and domain information |
|---|
| >PF13019 Telomere_Sde2: Telomere stability and silencing | Back alignment and domain information |
|---|
| >cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi | Back alignment and domain information |
|---|
| >KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription] | Back alignment and domain information |
|---|
| >cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
| >KOG0013 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 639 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 66/441 (14%), Positives = 120/441 (27%), Gaps = 158/441 (35%)
Query: 276 LQQFIPHDFDA---SDHGTSSFPVAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQ 332
F+ +FD D S + I + + T R LL K+ E F
Sbjct: 26 EDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-- 82
Query: 333 VELVPIDHGLCLPENLEDPYFEWI--HWAQASIPFSEDELEYINQLDP-FGDSGML---- 385
VE E L Y +++ S YI Q D + D+ +
Sbjct: 83 VE-----------EVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 386 --RLELPM-IREACLR------------------VLVICTIF---LKEAAAFG------- 414
RL+ + +R+A L + + ++ F
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 415 --------------LCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEESKPL----- 455
L I + + + I E RRLL+ KP
Sbjct: 191 NCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLL 248
Query: 456 -FDHVKAGDNEEFQ-FEIDCEEREFDLTLNMEEKLSSKCLSSGSKGV-NGQNSLYRLEES 512
+V+ + + + F + C+ L L++ K V + ++ S
Sbjct: 249 VLLNVQ--NAKAWNAFNLSCK------IL----------LTTRFKQVTDFLSAATTTHIS 290
Query: 513 VEE------EGENEG------NVTPLCLEDSAPPVWHMGPSFSKLSVSLKNITIGE---- 556
++ E + + P L P + +S+ I E
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTT---NPRRLSI----IAESIRD 339
Query: 557 -----KSWRHEGTMQKNGYLAGTSSGNMSVHEHL-PASTS--FVKLA------------- 595
+W+H + + S+ L PA F +L+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIE------SSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 596 -----DMNEEEWAQYLEKFQK 611
D+ + + + K K
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHK 413
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 99.66 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 99.62 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 99.59 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 99.57 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 99.56 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 99.56 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 99.55 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 99.54 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 99.54 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 99.54 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 99.54 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 99.53 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 99.53 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 99.52 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 99.5 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 99.5 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 99.49 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 99.49 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 99.49 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 99.49 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 99.49 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 99.48 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 99.48 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 99.48 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 99.47 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 99.47 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 99.47 | |
| 1wgh_A | 116 | Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo | 99.46 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 99.46 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 99.46 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 99.46 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 99.45 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 99.45 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 99.44 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 99.44 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 99.43 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 99.43 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 99.14 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 99.42 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 99.42 | |
| 2xzm_9 | 189 | RPS31E; ribosome, translation; 3.93A {Tetrahymena | 99.42 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 99.41 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 99.41 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 99.41 | |
| 1se9_A | 126 | Ubiquitin family; ubiquitin-like, cell-free, wheat | 99.4 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 99.4 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 99.39 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 99.39 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 99.39 | |
| 2gow_A | 125 | HCG-1 protein, ubiquitin-like protein 3; BC059385, | 99.38 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 99.38 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 99.38 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 99.37 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 99.37 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 99.37 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 99.36 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 99.36 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 99.36 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 99.36 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 99.35 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 99.34 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 99.34 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 99.33 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 99.33 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 99.32 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 99.31 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 99.3 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 99.29 | |
| 3u5c_f | 152 | 40S ribosomal protein S31; translation, ribosome, | 99.28 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 99.28 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 99.28 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 99.28 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 99.26 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 99.24 | |
| 2dzj_A | 88 | Synaptic glycoprotein SC2; ubiquitin-like fold, st | 99.24 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 99.23 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 99.23 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 99.18 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 99.15 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 99.11 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 99.1 | |
| 1oqy_A | 368 | HHR23A, UV excision repair protein RAD23 homolog A | 99.1 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 99.07 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 99.06 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 98.96 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 98.96 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 98.95 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 98.93 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 98.92 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 98.9 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 98.85 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 98.82 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 98.82 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 98.8 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 98.76 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 98.43 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 98.22 | |
| 3pge_A | 200 | SUMO-modified proliferating cell nuclear antigen; | 98.1 | |
| 4efo_A | 94 | Serine/threonine-protein kinase TBK1; ubiquitin li | 98.04 | |
| 3tix_A | 207 | Ubiquitin-like protein SMT3, RNA-induced transcri | 97.88 | |
| 3v7o_A | 227 | Minor nucleoprotein VP30; ssgcid, seattle structur | 97.53 | |
| 3uf8_A | 209 | Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- | 97.33 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 97.19 | |
| 3akj_A | 325 | CTKA; protein kinase, transferase; 2.00A {Helicoba | 96.82 | |
| 3ix6_A | 360 | TS, tsase, thymidylate synthase; niaid, ssgcid, se | 96.64 | |
| 1cja_A | 342 | Protein (actin-fragmin kinase); transferase; HET: | 96.64 | |
| 2jxx_A | 97 | Nfatc2-interacting protein; nuclear factor of acti | 96.51 | |
| 4da1_A | 389 | Protein phosphatase 1K, mitochondrial; metal-ION-a | 96.28 | |
| 2al3_A | 90 | TUG long isoform; TUG UBL1 insulin, endocytosis/ex | 95.91 | |
| 2kc2_A | 128 | Talin-1, F1; FERM, adhesion, cell membrane, cell p | 95.82 | |
| 2l76_A | 95 | Nfatc2-interacting protein; ubiquitin-like domain, | 94.79 | |
| 3goe_A | 82 | DNA repair protein RAD60; SUMO-like domain, sumoyl | 93.94 | |
| 3tpd_A | 440 | Serine/threonine-protein kinase HIPA; persistence, | 88.22 |
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=139.83 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=65.3
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.+.-++|||||.+|+++.++|++++||++||++|++++|||+++|||+|+|++|+|+.+ +|++++||||.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 34458999999999999999999999999999999999999999999999999999986 99999999994
|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} | Back alignment and structure |
|---|
| >3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} | Back alignment and structure |
|---|
| >3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A* | Back alignment and structure |
|---|
| >3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
| >1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3 | Back alignment and structure |
|---|
| >2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A | Back alignment and structure |
|---|
| >2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* | Back alignment and structure |
|---|
| >3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 639 | ||||
| d2zeqa1 | 78 | d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin | 9e-04 | |
| d1z2ma2 | 76 | d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot | 0.003 |
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of parkin species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.4 bits (84), Expect = 9e-04
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND 92
VFV+ Y +E+D + +K + VP ++ +I+ L N
Sbjct: 4 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH 55
|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 99.7 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 99.7 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 99.69 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 99.68 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 99.66 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 99.65 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 99.64 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 99.61 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 99.59 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 99.58 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 99.56 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.55 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 99.51 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 99.48 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 99.47 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 99.46 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 99.43 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 99.42 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 99.41 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 99.37 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 99.36 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 99.36 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 99.35 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 99.33 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 99.3 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 99.29 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 99.21 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 99.2 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 99.13 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 99.0 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 98.78 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 98.76 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 98.74 | |
| d1x1ma1 | 94 | Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta | 98.67 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 98.45 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1wf9a1 | 94 | NPL4-like protein 1 {Thale cress (Arabidopsis thal | 96.89 | |
| d1cjaa_ | 342 | Actin-fragmin kinase, catalytic domain {Physarum p | 94.96 | |
| d2al3a1 | 76 | Tether containing UBX domain for GLUT4 (Tug) {Mous | 94.28 | |
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 87.1 |
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Rub1 species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=1.4e-17 Score=136.02 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=64.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+|||.+|++++++|++++||.++|++|++++|+|+++|||+|+|++|+|+.+ +|++++||||+
T Consensus 1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv 70 (73)
T d1bt0a_ 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70 (73)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999885 99999999995
|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]} | Back information, alignment and structure |
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| >d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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