Citrus Sinensis ID: 006600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEccccHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHcccEEEccccccccccccEEcccccEEEEEcccccccccEEEEEccccEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEEccccccccccccccEEEEcHHHHHHHHHHHHHccccEEEEEccEEEEccccccEEEccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccEEEEcccccEEEEEEEEEccccccEEEEEEEcccccEEEEEccEEEEEEcccEEEEEEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEccccccccccHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccHccccccccccccEEEccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEEEccccccccccEcccccEEEEEEccccccccccEEEEccccEEEEEEEccccccccccEEEEEccccccccccccHHHHcccccccHHHcccEEEEEEcccccHHHHHHHHHHHHcccEEEEEEccccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEcccEEEccccccEEEEEcccccccccHHHccccccccccEEEEEccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccEEEEccHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEEEccEEEEEEEEEEEEccccccEEEEEEEEEcccEEEEccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mdtgiwpesesfkdenmgeipprwngicqegegfnrsncnrkiigarwyVKGYeaefgklnssdrveflsprdavghgthtsstaaggmvkdaSFLGLAQGLARGGAPLAWLAIYKIcwapggcssadllaafddatfdgVDVISLslgsslplstyvddiisIGSFHAVAKGISVVCsagnsgpypqtvintapWVITVAAStidrafptaitmgnnqtVVGQAfyngkedlnkfypivigkdiatfdadegsarscesgtlnatlVRGKIVICFQSQFQRSAATAARTVLDsggvglifakfptkdvhfsfgvpyiqVDFAIGTSLLTYMeanrnpivkfsftktvigqqispevaffssrgpsslspsvlkpdiaapgvnilaswspvsnleqtdhvtpnyipqfnfkvesgtsmscphISGIVALLKAihptwspaaIKSAIVTTASLKDEYAQSIvaegaphkqadpfdyggghvdpnkamdpglvydmEVSDYVRFLCAMGYNNSAISLMNrasttcndkstkflvnlnlpsitipelkKSITVSRQvtnvspmnsVYTArvqapagttvrvepstltfnstrKKLKFKVTFYSRLRVqgrysfgnlfwedgihvvrIPLIVRTIIDEFYAET
Flexible Loop (DISEMBL)
mdtgiwpesesfkdenmgeipPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQvtnvspmnsvytarvqapagttvrvepstltfnstrkklkfkvtfysrlrVQGRYSfgnlfwedgihvvRIPLIVRTIIDEFYAET
Low Complexity Region (SEG)
MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFlglaqglarggaplaWLAIYKICWAPGGCSSadllaafddatfdGVDVIslslgsslplsTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFssrgpsslspsVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET
Disordered region (IsUnstruct)
**********************RWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNS***V*F******************GGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF***************DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVA**********FDYGGGHV***KAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFY***
Disordered Region (DISOPRED)
MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSD*VEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYA**
Disordered Region (DISEMBL)
MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDA********ESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFS*********SVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET
Disordered Region (DISPRO)
**TGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGK*N***************HGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFY***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	639	2.2.26 [Sep-21-2011]
O64495	775	Subtilisin-like protease	no	no	0.949	0.783	0.426	1e-132
O65351	757	Subtilisin-like protease	no	no	0.949	0.801	0.416	1e-131
Q39547	731	Cucumisin OS=Cucumis melo	N/A	no	0.912	0.797	0.414	1e-125
Q9LLL8	749	Xylem serine proteinase 1	no	no	0.924	0.789	0.406	1e-112
P29141	806	Minor extracellular prote	yes	no	0.517	0.410	0.31	6e-29
Q02470	1902	PII-type proteinase OS=La	N/A	no	0.464	0.156	0.260	2e-08
P0DD35	1169	C5a peptidase OS=Streptoc	yes	no	0.553	0.302	0.243	2e-07
P0DD34	1169	C5a peptidase OS=Streptoc	N/A	no	0.553	0.302	0.243	2e-07
O31788	442	Serine protease AprX OS=B	no	no	0.170	0.246	0.350	2e-07
Q5X9R0	1184	C5a peptidase OS=Streptoc	N/A	no	0.553	0.298	0.241	3e-07

>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/647 (42%), Positives = 386/647 (59%), Gaps = 40/647 (6%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTG+WPES SF D  M  IP +W GICQEGE F+ S+CNRK+IGAR++++G+       
Sbjct: 145 LDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPE 204

Query: 61  NSSDR-VEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICW 119
            S +   E++S RD+ GHGTHT+ST  G  V  A+ LG   G+ARG AP A +A+YK+CW
Sbjct: 205 ESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCW 264

Query: 120 APGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCS 179
              GC S+D+LAA D A  D VDV+SLSLG   P+  Y DD I+IG+F A+ +GISV+C+
Sbjct: 265 F-NGCYSSDILAAIDVAIQDKVDVLSLSLGG-FPIPLY-DDTIAIGTFRAMERGISVICA 321

Query: 180 AGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPI 239
           AGN+GP   +V NTAPWV T+ A T+DR FP  + + N + + G++ Y GK   N    +
Sbjct: 322 AGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREV 381

Query: 240 VIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGL 299
            +   I     D+GS   C  G+L    +RGK+VIC +    RS    A  V ++GGV +
Sbjct: 382 EV---IYVTGGDKGS-EFCLRGSLPREEIRGKMVICDRGVNGRSEKGEA--VKEAGGVAM 435

Query: 300 IFAKFPTK------DVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQI 353
           I A           DVH    +P   + +     L  Y+ A   P  +  F  TVIG+  
Sbjct: 436 ILANTEINQEEDSIDVHL---LPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSR 492

Query: 354 SPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVE 413
           +PEVA FS+RGPS  +PS+LKPD+ APGVNI+A+W    NL  T    P    + NF V 
Sbjct: 493 APEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWP--QNLGPTG--LPYDSRRVNFTVM 548

Query: 414 SGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPF 473
           SGTSMSCPH+SGI AL+++ +P WSPAAIKSA++TTA L D   ++I  +G  +K A  F
Sbjct: 549 SGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAI-KDG--NKPAGVF 605

Query: 474 DYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCN---DKSTKF 530
             G GHV+P KA++PGLVY+++  DY+ +LC +G+  S I  +   + +CN    K+  F
Sbjct: 606 AIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGF 665

Query: 531 LVNLNLPSITI--PELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNST 588
             +LN PSI +     K +  ++R+VTNV   NS+Y+  V+AP G  V V P  L F   
Sbjct: 666 --SLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHV 723

Query: 589 RKKLKFKVTFYSRLRVQG----RYSFGNLFW---EDGIHVVRIPLIV 628
            + L ++V F  + + +G     ++ G L W    + +  VR P+ V
Sbjct: 724 DQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770

Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1

 Score =  470 bits (1210), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/638 (41%), Positives = 374/638 (58%), Gaps = 31/638 (4%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTG+WPES+S+ DE  G IP  W G C+ G  F  S CNRK+IGAR++ +GYE+  G +
Sbjct: 138 LDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPI 197

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           + S   E  SPRD  GHGTHTSSTAAG +V+ AS LG A G ARG AP A +A+YK+CW 
Sbjct: 198 DESK--ESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWL 255

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGC S+D+LAA D A  D V+V+S+SLG    +S Y  D ++IG+F A+ +GI V CSA
Sbjct: 256 -GGCFSSDILAAIDKAIADNVNVLSMSLGGG--MSDYYRDGVAIGAFAAMERGILVSCSA 312

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GN+GP   ++ N APW+ TV A T+DR FP    +GN +   G + + G+   +K  P +
Sbjct: 313 GNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFI 372

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
              + +  +A  G+   C +GTL    V+GKIV+C +    R        V  +GGVG+I
Sbjct: 373 YAGNAS--NATNGNL--CMTGTLIPEKVKGKIVMCDRGINAR--VQKGDVVKAAGGVGMI 426

Query: 301 FAKFPTK------DVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQIS 354
            A           D H    +P   V    G  +  Y+  + NP    S   TV+G + S
Sbjct: 427 LANTAANGEELVADAHL---LPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPS 483

Query: 355 PEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVES 414
           P VA FSSRGP+S++P++LKPD+ APGVNILA+W+  +    T   + +   +FN  + S
Sbjct: 484 PVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAG--PTGLASDSRRVEFN--IIS 539

Query: 415 GTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA--SLKDEYAQSIVAEGAPHKQADP 472
           GTSMSCPH+SG+ ALLK++HP WSPAAI+SA++TTA  + KD      +A G P   + P
Sbjct: 540 GTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKP---STP 596

Query: 473 FDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLV 532
           FD+G GHV P  A +PGL+YD+   DY+ FLCA+ Y +  I  ++R + TC+   +  + 
Sbjct: 597 FDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVA 656

Query: 533 NLNLPSITIP-ELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKK 591
           +LN PS  +  +   +   +R VT+V    +          G  + VEP+ L F    +K
Sbjct: 657 DLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEK 716

Query: 592 LKFKVTF-YSRLRVQGRYSFGNLFWEDGIHVVRIPLIV 628
             + VTF     +  G  SFG++ W DG HVV  P+ +
Sbjct: 717 KSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754

Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1

 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 266/642 (41%), Positives = 364/642 (56%), Gaps = 59/642 (9%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF DE     PP+W G C+    F    CNRKIIGAR Y  G     G +
Sbjct: 139 LDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDV 195

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N         PRD  GHGTHT+STAAGG+V  A+  GL  G ARGG PLA +A YK+CW 
Sbjct: 196 NG--------PRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN 247

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
             GCS  D+LAA+DDA  DGVD+ISLS+G + P   +V D I+IGSFHAV +GI    SA
Sbjct: 248 -DGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFV-DAIAIGSFHAVERGILTSNSA 305

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GN GP   T  + +PW+++VAAST+DR F T + +GN Q+  G +        N++YP+V
Sbjct: 306 GNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLV 362

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQS----QFQRSAATAARTVLDSGG 296
            G+DI     D+ ++R C   ++N  L++GKIV+C  S    +F +S   AA  ++ S  
Sbjct: 363 SGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSN- 421

Query: 297 VGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPE 356
                    T+D   S+ +P   +D     + L Y+ + R+P     F  T I    +P 
Sbjct: 422 ---------TRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPV 471

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVNILASW---SPVSNLEQTDHVTPNYIPQFNFKVE 413
           V  FSSRGP+  +  V+KPDI+ PGV ILA+W   +PV  + +             F + 
Sbjct: 472 VVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL----------FNII 521

Query: 414 SGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPF 473
           SGTSMSCPHI+GI   +K  +PTWSPAAIKSA++TTAS  +       A   P  +   F
Sbjct: 522 SGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN-------ARFNPQAE---F 571

Query: 474 DYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVN 533
            YG GHV+P KA+ PGLVYD   SDYV+FLC  GYN  A+  +    + C   +T  + +
Sbjct: 572 AYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWD 631

Query: 534 LNLPSITI---PELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRK 590
           LN PS  +   P    +   +R +T+V+P  S Y A + AP G T+ V P+ L+FN    
Sbjct: 632 LNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGD 691

Query: 591 KLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII 632
           +  F +T   R  ++G     +L W DG+H VR P+ + +++
Sbjct: 692 RKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITITSLV 731

Cucumis melo (taxid: 3656)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/637 (40%), Positives = 362/637 (56%), Gaps = 46/637 (7%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGI P+SESF D  +G  P +W G C  G   N + CN KIIGA+++        G  
Sbjct: 144 LDTGITPDSESFLDHGLGPPPAKWKGSC--GPYKNFTGCNNKIIGAKYFKHDGNVPAG-- 199

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
                 E  SP D  GHGTHTSST AG +V +AS  G+A G ARG  P A LA+YK+CWA
Sbjct: 200 ------EVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWA 253

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
             GC+  D+LA F+ A  DGV++IS+S+G    ++ Y  D IS+GSFHA+ KGI  V SA
Sbjct: 254 RSGCADMDILAGFEAAIHDGVEIISISIGGP--IADYSSDSISVGSFHAMRKGILTVASA 311

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTV--VGQAFYNGKEDLNKFYP 238
           GN GP   TV N  PW++TVAAS IDR F + I +GN ++   +G + ++ K    K YP
Sbjct: 312 GNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKA---KSYP 368

Query: 239 IVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVG 298
           +V G D A    D+  AR C S +L+   V+GK+++C     +        T+   GG G
Sbjct: 369 LVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVC-----RMGGGGVESTIKSYGGAG 423

Query: 299 LIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVA 358
            I       D    F  P   V+ ++G  +  Y+ + R+       T+ V     +P VA
Sbjct: 424 AIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYINSTRSASAVIQKTRQVTIP--APFVA 481

Query: 359 FFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFN-FKVESGTS 417
            FSSRGP+  S  +LKPDIAAPG++ILA+++   +L   D  T     QF+ F + SGTS
Sbjct: 482 SFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDT-----QFSKFTILSGTS 536

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGG 477
           M+CPH++G+ A +K+ HP W+PAAIKSAI+T+A                +K A+ F YGG
Sbjct: 537 MACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRV---------NKDAE-FAYGG 586

Query: 478 GHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAIS-LMNRASTTCNDKSTKFLVN-LN 535
           G ++P +A  PGLVYDM+   YV+FLC  GYN + ++ L+   S +C+        + LN
Sbjct: 587 GQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLN 646

Query: 536 LPSI--TIPELKKSI--TVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKK 591
            P+I  T+   K S      R+VTNV P +SVYTA V+AP G  + VEP +L+F+   +K
Sbjct: 647 YPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQK 706

Query: 592 LKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIV 628
             FKV   ++    G+   G L W+   H VR P+++
Sbjct: 707 RSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1

 Score =  129 bits (324), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 194/400 (48%), Gaps = 69/400 (17%)

Query: 71  PR-DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           PR +A  HGTH + T A            A G  +G AP A L  Y++    G  ++ ++
Sbjct: 226 PRGEATDHGTHVAGTVA------------ANGTIKGVAPDATLLAYRVLGPGGSGTTENV 273

Query: 130 LAAFDDATFDGVDVISLSLGSSL-----PLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
           +A  + A  DG DV++LSLG+SL       ST +D         A+++G+  V S GNSG
Sbjct: 274 IAGVERAVQDGADVMNLSLGNSLNNPDWATSTALD--------WAMSEGVVAVTSNGNSG 325

Query: 185 PYPQTVIN--TAPWVITVAASTIDRAFPTAITMGN--NQTVVGQAFYNGKEDLNKFYPIV 240
           P   TV +  T+   I+V A+ +      A+T G+  +  V+G   YN ++D+       
Sbjct: 326 PNGWTVGSPGTSREAISVGATQLPLN-EYAVTFGSYSSAKVMG---YNKEDDVKALN--- 378

Query: 241 IGKDIATFDADEGSARSCESGTLN---ATLVRGKIVICFQSQFQRSAATAARTVLDSGGV 297
             K++   +A  G A+  E   L    A + RG I    ++   + A      V ++   
Sbjct: 379 -NKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLS- 436

Query: 298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEV 357
           G I A  P         VP I++    G  L++ ++A      K +F K  + + +  +V
Sbjct: 437 GEIEANVP------GMSVPTIKLSLEDGEKLVSALKAGE---TKTTF-KLTVSKALGEQV 486

Query: 358 AFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQ--FNFKVESG 415
           A FSSRGP  +   ++KPDI+APGVNI+++              P + P   + +  + G
Sbjct: 487 ADFSSRGPV-MDTWMIKPDISAPGVNIVST-------------IPTHDPDHPYGYGSKQG 532

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA-SLKD 454
           TSM+ PHI+G VA++K   P WS   IK+AI+ TA +LKD
Sbjct: 533 TSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKD 572

Not required for growth or sporulation.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 154/361 (42%), Gaps = 64/361 (17%)

Query: 105 GGAPLAWLAIYKI---CWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDI 161
           G AP A L   K+           SA L++A +D+   G DV+++SLGS     T  D  
Sbjct: 304 GVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPE 363

Query: 162 ISIGSFHAVAKGISVVCSAGNSGPYPQTV--IN----------------TAPWVITVAAS 203
           I+    +A   G + V SAGNSG        +N                T+    TVA++
Sbjct: 364 IA-AVQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASA 422

Query: 204 TIDRAFPTAITMGNNQTV--------VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSA 255
                   A+T+ + + +        +    + G  D  KFY +   KD A+ D  +G+A
Sbjct: 423 ENTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVV---KD-ASGDLSKGAA 478

Query: 256 R--SCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSF 313
              + ++    A + RG++    + ++ ++A  A   ++++ G        P   +  + 
Sbjct: 479 ADYTADAKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTAT-----PLTSIRLTT 533

Query: 314 GVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPE--VAFFSSRGP-SSLSP 370
             P   +    G  L+ ++ A+ +  +      T++  Q   E  ++ F+S GP S+LS 
Sbjct: 534 TFPTFGLSSKTGQKLVDWVTAHPDDSLGVKIALTLLPNQKYTEDKMSDFTSYGPVSNLS- 592

Query: 371 SVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL 430
              KPDI APG NI   WS  +N   T+               SGTSM+ P I+G  ALL
Sbjct: 593 --FKPDITAPGGNI---WSTQNNNGYTNM--------------SGTSMASPFIAGSQALL 633

Query: 431 K 431
           K
Sbjct: 634 K 634

Protease which breaks down milk proteins during the growth of the bacteria on milk.

Lactobacillus paracasei (taxid: 1597)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 6

>sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 176/443 (39%), Gaps = 89/443 (20%)

Query: 77  HGTHTSSTAAGGM---VKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSA-DLLAA 132
           HGTH S   +G      K+   L        G  P A L + ++    G    A +   A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRL-------EGAMPEAQLLLMRVEIVNGLADYARNYAQA 247

Query: 133 FDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNS--------- 183
             DA   G  VI++S G++      + D       +A +KG+S+V SAGN          
Sbjct: 248 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 307

Query: 184 --GPYPQT-VINT---APWVITVAASTIDRAFPTAITM--GNNQTVVGQAFYNGKEDLNK 235
               +P   V+ T   A   +TVA+ + D+      T+   + Q          + + NK
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 367

Query: 236 FYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQ--FQRSAATAARTVLD 293
            Y            A+ G+         +   V+GKI +  +    F+   A A +    
Sbjct: 368 AYDYAY--------ANRGTKED------DFKDVKGKIALIERGDIDFKDKIANAKK---- 409

Query: 294 SGGVGLIFAKFPTKDVHFSFGVPYI-QVDFA-IGTSLLTYMEANRNPIVKFSFTKTVIGQ 351
           +G VG++   +  +D  F   +P + Q+  A I       ++ N    + F+ T  V+  
Sbjct: 410 AGAVGVLI--YDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPT 467

Query: 352 QISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFK 411
               +++ FSS G ++     +KPDIAAPG +IL+S                 +    + 
Sbjct: 468 ASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSS-----------------VANNKYA 508

Query: 412 VESGTSMSCPHISGIVALLKAIHPTWSPA---------AIKSAIVTTASLKDEYAQSIVA 462
             SGTSMS P ++GI+ LL+  + T  P          A K  + +  +L DE  ++   
Sbjct: 509 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYF- 567

Query: 463 EGAPHKQADPFDYGGGHVDPNKA 485
             +P +Q      G G VD  KA
Sbjct: 568 --SPRQQ------GAGAVDAKKA 582

This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant.

Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 1

EC: 0

>sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 176/443 (39%), Gaps = 89/443 (20%)

Query: 77  HGTHTSSTAAGGM---VKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSA-DLLAA 132
           HGTH S   +G      K+   L        G  P A L + ++    G    A +   A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRL-------EGAMPEAQLLLMRVEIVNGLADYARNYAQA 247

Query: 133 FDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNS--------- 183
             DA   G  VI++S G++      + D       +A +KG+S+V SAGN          
Sbjct: 248 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 307

Query: 184 --GPYPQT-VINT---APWVITVAASTIDRAFPTAITM--GNNQTVVGQAFYNGKEDLNK 235
               +P   V+ T   A   +TVA+ + D+      T+   + Q          + + NK
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 367

Query: 236 FYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQ--FQRSAATAARTVLD 293
            Y            A+ G+         +   V+GKI +  +    F+   A A +    
Sbjct: 368 AYDYAY--------ANRGTKED------DFKDVKGKIALIERGDIDFKDKIANAKK---- 409

Query: 294 SGGVGLIFAKFPTKDVHFSFGVPYI-QVDFA-IGTSLLTYMEANRNPIVKFSFTKTVIGQ 351
           +G VG++   +  +D  F   +P + Q+  A I       ++ N    + F+ T  V+  
Sbjct: 410 AGAVGVLI--YDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPT 467

Query: 352 QISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFK 411
               +++ FSS G ++     +KPDIAAPG +IL+S                 +    + 
Sbjct: 468 ASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSS-----------------VANNKYA 508

Query: 412 VESGTSMSCPHISGIVALLKAIHPTWSPA---------AIKSAIVTTASLKDEYAQSIVA 462
             SGTSMS P ++GI+ LL+  + T  P          A K  + +  +L DE  ++   
Sbjct: 509 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYF- 567

Query: 463 EGAPHKQADPFDYGGGHVDPNKA 485
             +P +Q      G G VD  KA
Sbjct: 568 --SPRQQ------GAGAVDAKKA 582

This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant.

Streptococcus pyogenes serotype M3 (taxid: 301448)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 1

EC: 0

>sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 65/137 (47%), Gaps = 28/137 (20%)

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSP---VSNLEQTDHVTPNYIPQFNFKVE 413
           VA FSSRGP+       KPDI APGVNI++  SP   +  L+++  V   Y         
Sbjct: 329 VASFSSRGPTVYGKE--KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTM------ 380

Query: 414 SGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVT-TASLKDEYAQSIVAEGAPHKQADP 472
           SGTSM+ P  +GI AL+   +P  +P  +K  +   T   KDE               DP
Sbjct: 381 SGTSMATPICAGIAALILQQNPDLTPDEVKELLKNGTDKWKDE---------------DP 425

Query: 473 FDYGGGHVDPNKAMDPG 489
             YG G V+   ++ PG
Sbjct: 426 NIYGAGAVNAENSV-PG 441

Displays serine protease activity. Seems to have a broad substrate specificity.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 169/443 (38%), Gaps = 89/443 (20%)

Query: 77  HGTHTSSTAAGGM---VKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLA-A 132
           HGTH S   +G      K+   L        G  P A L + ++    G    A   A A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRL-------EGAMPEAQLLLMRVEIVNGLADYARNYAQA 245

Query: 133 FDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNS--------- 183
             DA   G  VI++S G++      + D       +A +KG+S+V SAGN          
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305

Query: 184 --GPYPQT-VINT---APWVITVAASTIDRAFPTAITM--GNNQTVVGQAFYNGKEDLNK 235
               +P   V+ T   A   +TVA+ + D+      T+   + Q          + + NK
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 365

Query: 236 FYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQ--FQRSAATAARTVLD 293
            Y                  R  +        V+GKI +  +    F+   A A +    
Sbjct: 366 AYDYAYAN------------RGMKEDDFKD--VKGKIALIERGDIDFKDKIANAKK---- 407

Query: 294 SGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNP--IVKFSFTKTVIGQ 351
           +G VG++   +  +D  F   +P +    A   S    +    NP   + F+ T  V+  
Sbjct: 408 AGAVGVLI--YDNQDKGFPIELPNVDQMPAAFISRKDGLLLKENPQKTITFNATPKVLPT 465

Query: 352 QISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFK 411
               +++ FSS G ++     +KPDIAAPG +IL+S                 +    + 
Sbjct: 466 ASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSS-----------------VANNKYA 506

Query: 412 VESGTSMSCPHISGIVALLKAIHPTWSPA---------AIKSAIVTTASLKDEYAQSIVA 462
             SGTSMS P ++GI+ LL+  + T  P          A K  + +  +L DE  ++  +
Sbjct: 507 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 566

Query: 463 EGAPHKQADPFDYGGGHVDPNKA 485
                    P   G G VD  KA
Sbjct: 567 ---------PRQQGAGAVDAKKA 580

This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant.

Streptococcus pyogenes serotype M6 (taxid: 301450)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	639
224077900	739	predicted protein [Populus trichocarpa]	0.989	0.855	0.760	0.0
255543843	774	Xylem serine proteinase 1 precursor, put	0.995	0.821	0.749	0.0
356538704	782	PREDICTED: cucumisin-like [Glycine max]	0.990	0.809	0.714	0.0
359474916	768	PREDICTED: subtilisin-like protease SDD1	0.989	0.822	0.694	0.0
297744744	805	unnamed protein product [Vitis vinifera]	0.989	0.785	0.694	0.0
242045388	765	hypothetical protein SORBIDRAFT_02g03076	0.985	0.823	0.627	0.0
125564467	769	hypothetical protein OsI_32138 [Oryza sa	0.981	0.815	0.633	0.0
326497505	770	predicted protein [Hordeum vulgare subsp	0.981	0.814	0.624	0.0
115480315	769	Os09g0530800 [Oryza sativa Japonica Grou	0.981	0.815	0.632	0.0
259490022	768	uncharacterized protein LOC100304357 pre	0.985	0.820	0.625	0.0

>gi|224077900|ref|XP_002305456.1| predicted protein [Populus trichocarpa] gi|222848420|gb|EEE85967.1| predicted protein [Populus trichocarpa]

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/638 (76%), Positives = 556/638 (87%), Gaps = 6/638 (0%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           MDTGIWPES+SF+DE M E+P RW GICQEGEGFNRS+CNRKIIGARWY+KGYEAEFGKL
Sbjct: 107 MDTGIWPESKSFRDEGMAEVPSRWRGICQEGEGFNRSHCNRKIIGARWYIKGYEAEFGKL 166

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N+SD  EFLSPRDA GHGTHTSSTA GG+V++ASF+GLAQGLARGGAP AWLA+YK+CWA
Sbjct: 167 NTSDGDEFLSPRDAGGHGTHTSSTATGGLVENASFMGLAQGLARGGAPSAWLAVYKVCWA 226

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGC+ ADLLAAFDDA FDGVDV+S+SLGS+ PL+TYV+D ++IGSF+AVAKGISVVCSA
Sbjct: 227 TGGCAEADLLAAFDDAIFDGVDVLSVSLGSAPPLATYVEDAVAIGSFYAVAKGISVVCSA 286

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPYPQT+ NTAPWV+TVAASTIDRAFPT IT+GNNQT+VGQA Y GK +++ F+PIV
Sbjct: 287 GNSGPYPQTITNTAPWVVTVAASTIDRAFPTIITLGNNQTIVGQALYTGK-NVDTFHPIV 345

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G++I   D+DE SAR C SG+LNATL RGK+++CF+S+ QRS   A RTVLD  GVGLI
Sbjct: 346 YGEEIVADDSDEDSARGCASGSLNATLARGKVILCFESRSQRSNIIARRTVLDVKGVGLI 405

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+ PTKDV  S  +P IQVDFAIGT LLTYME++RNP+VKFSFTKTVIGQQISPEVAFF
Sbjct: 406 FAQSPTKDVTLSLDIPCIQVDFAIGTYLLTYMESSRNPVVKFSFTKTVIGQQISPEVAFF 465

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSS+S +VLKPDIAAPGVNILASWSP ++    D    N     +FK+ESGTSMSC
Sbjct: 466 SSRGPSSISATVLKPDIAAPGVNILASWSPAASPAIID----NEARPLDFKIESGTSMSC 521

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISG+VALLKA HP WSPAAIKSA++TTAS++DEY Q  VAEGAPHKQADPFDYGGGHV
Sbjct: 522 PHISGVVALLKAAHPKWSPAAIKSALITTASIEDEYGQKTVAEGAPHKQADPFDYGGGHV 581

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           DP++AMDPGLV+DM  SDY+RFLCA+GYNNSAISLM R  T C  KST FLVNLNLPSIT
Sbjct: 582 DPDRAMDPGLVFDMGTSDYIRFLCALGYNNSAISLMTRTRTRCK-KSTTFLVNLNLPSIT 640

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IPELK+++TVSR VTNV P+ S+Y ARV APAGT V VEPS L+F+STRKK+KFKVTF S
Sbjct: 641 IPELKQNLTVSRTVTNVGPITSIYVARVLAPAGTRVTVEPSVLSFDSTRKKIKFKVTFCS 700

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAE 638
            LR+QGRYSFGNLFWEDG HVVRIPLIV+T+ID+FYAE
Sbjct: 701 MLRIQGRYSFGNLFWEDGFHVVRIPLIVKTVIDDFYAE 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543843|ref|XP_002512984.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223547995|gb|EEF49487.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score =  984 bits (2543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/639 (74%), Positives = 547/639 (85%), Gaps = 3/639 (0%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPESESF+DE    +P  W GICQEGEGFN S+CNRKIIGARWY+KGYEAEFGKL
Sbjct: 139 LDTGIWPESESFRDEGFRGLPLGWKGICQEGEGFNHSHCNRKIIGARWYIKGYEAEFGKL 198

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N++D VEFLSPRDA GHGTHTSS A G +V++ASF GLAQG+ARGGAP AWLAIYK+CWA
Sbjct: 199 NTNDGVEFLSPRDADGHGTHTSSIATGALVRNASFNGLAQGMARGGAPSAWLAIYKVCWA 258

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGCSSAD+LAAFDDA FDG +V+S+SLGS+ PL+TY++D I+IGSFHAVAKGI VV SA
Sbjct: 259 TGGCSSADILAAFDDAVFDGANVLSVSLGSTPPLATYIEDPIAIGSFHAVAKGIVVVSSA 318

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPYPQTV NTAPWV+TVAASTIDRAFPT IT+GNNQT+ GQAFY GK +  +F+PIV
Sbjct: 319 GNSGPYPQTVQNTAPWVVTVAASTIDRAFPTIITLGNNQTLRGQAFYTGK-NTGEFHPIV 377

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G+DIA  DADE  AR CE GTLNATL RGK+++CFQS+ QRS+ +A  TVLD  GVGLI
Sbjct: 378 NGEDIAANDADEYGARGCEPGTLNATLARGKVILCFQSRSQRSSTSAVTTVLDVQGVGLI 437

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA++PTKDV  S   P +QVDFAIGT LLTYMEA+RNP+VKFSFTKT IGQQISPEVAFF
Sbjct: 438 FAQYPTKDVFMSLDFPLVQVDFAIGTYLLTYMEADRNPVVKFSFTKTAIGQQISPEVAFF 497

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSP+VLKPDIAAPGVNILASWSP ++   +D +T N +   NFK++SGTSM+C
Sbjct: 498 SSRGPSSLSPTVLKPDIAAPGVNILASWSPAASPSTSD-MTNNKVAPLNFKLDSGTSMAC 556

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISGIVALLK+IHP WSPAAIKSA+VTTAS KDEY Q IVAEGAPHKQADPFDYGGGHV
Sbjct: 557 PHISGIVALLKSIHPKWSPAAIKSALVTTASTKDEYGQHIVAEGAPHKQADPFDYGGGHV 616

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           +PNKA++PGL+YDM +SDY+ FLC+MGYNNSAIS M R+ T C   ST  L+NLNLPSI 
Sbjct: 617 NPNKALNPGLIYDMGMSDYISFLCSMGYNNSAISSMTRSKTVCK-HSTNSLLNLNLPSIA 675

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IP LK+ +TVSR VTNV P+ S+Y ARVQ PAGT VRVEPS L+FNS+ KK KF+VTF S
Sbjct: 676 IPNLKQELTVSRTVTNVGPVTSIYMARVQVPAGTYVRVEPSVLSFNSSVKKRKFRVTFCS 735

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET 639
            LRVQGRYSFGNLFWEDG HVVR PL+VRT+IDEFYAET
Sbjct: 736 LLRVQGRYSFGNLFWEDGCHVVRTPLVVRTVIDEFYAET 774

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538704|ref|XP_003537841.1| PREDICTED: cucumisin-like [Glycine max]

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/644 (71%), Positives = 537/644 (83%), Gaps = 11/644 (1%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           MDTGIWPESESF+DE+M   P  W GICQEGE F+ S+CN KIIGARWY+KGYEAE GKL
Sbjct: 143 MDTGIWPESESFRDEHMDNPPLHWRGICQEGESFDHSHCNSKIIGARWYIKGYEAEIGKL 202

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N+SD VE+LSPRDA GHGTHTSSTAAG  V++ASF+GLA+GLARGGAP AWLAIYKICW+
Sbjct: 203 NTSDGVEYLSPRDASGHGTHTSSTAAGVAVENASFMGLAKGLARGGAPSAWLAIYKICWS 262

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGCSSAD+LAAFDDA FDGVD++S SLGS  PL TYV+D ++IGSFHAVAKGISVVCS 
Sbjct: 263 TGGCSSADILAAFDDAIFDGVDILSASLGSDPPLPTYVEDALAIGSFHAVAKGISVVCSG 322

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPYPQTVINTAPW++TVAASTIDR F + I +GNNQT+ GQ+ Y GK DL+KFYPIV
Sbjct: 323 GNSGPYPQTVINTAPWLVTVAASTIDREFSSRIILGNNQTLQGQSLYTGK-DLSKFYPIV 381

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G+DIA  D+DE SARSC SG+LN+TL +GK ++CFQS+ QRSA  A RTV ++GG GLI
Sbjct: 382 FGEDIAASDSDEESARSCNSGSLNSTLAKGKAILCFQSRSQRSATVAIRTVTEAGGAGLI 441

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+FPTKDV  S+  P +QVDF  GT++L+YMEA RNP++KFS TKTV+G+Q+SPEVAFF
Sbjct: 442 FAQFPTKDVDTSWSKPCVQVDFITGTTILSYMEATRNPVIKFSKTKTVVGRQLSPEVAFF 501

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSP------VSNLEQTDHVTPNYIPQFNFKVES 414
           SSRGPSSLSPSVLKPDIAAPGVNILA+WSP      VS+ E  D      +   NF +ES
Sbjct: 502 SSRGPSSLSPSVLKPDIAAPGVNILAAWSPASSARLVSDAENEDETE---LHPLNFNIES 558

Query: 415 GTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFD 474
           GTSM+CPHI+GIVAL+K IHPTWSPAAIKSA+VTTASLK+EY + I AEGAPHKQADPFD
Sbjct: 559 GTSMACPHITGIVALIKTIHPTWSPAAIKSALVTTASLKNEYKEYIWAEGAPHKQADPFD 618

Query: 475 YGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNL 534
           YGGGHVDPNK  DPGLVYDM+ SDY+RFLC+MGYNN+AIS++    T C+ KS KFL+N+
Sbjct: 619 YGGGHVDPNKVTDPGLVYDMKNSDYIRFLCSMGYNNTAISILTGFPTKCH-KSHKFLLNM 677

Query: 535 NLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKF 594
           NLPSITIPELK+ +TVSR VTNV P+ S YTARV AP G +V VEPSTL F+S RKK+KF
Sbjct: 678 NLPSITIPELKQPLTVSRTVTNVGPVKSNYTARVVAPIGISVIVEPSTLAFSSKRKKMKF 737

Query: 595 KVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAE 638
           KVTF S+LRVQ R+SFG L WEDG+H VRIPL VR+ + EF  +
Sbjct: 738 KVTFSSKLRVQSRFSFGYLLWEDGLHEVRIPLAVRSAVHEFCGQ 781

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474916|ref|XP_002274842.2| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/635 (69%), Positives = 525/635 (82%), Gaps = 3/635 (0%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES+SFKD+ MG+IP RW+G CQEGE FNRSNCNRKIIGARWY+KGYEA+FGKL
Sbjct: 137 IDTGIWPESDSFKDKGMGKIPSRWHGTCQEGEQFNRSNCNRKIIGARWYIKGYEADFGKL 196

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           ++S  VEFLSPRDAVGHGTHT+S AAG +VK+A+F GLA+GLARGGAP A LA+YK+CW+
Sbjct: 197 DTSGGVEFLSPRDAVGHGTHTASIAAGSLVKNANFRGLARGLARGGAPSAQLAVYKVCWS 256

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGCSSAD+LAAFDDA  DGVDV+S+SLGSS PL+ Y DD ++IGSFHAVAKGISVVCSA
Sbjct: 257 TGGCSSADVLAAFDDAVLDGVDVLSVSLGSSPPLTAYFDDSLAIGSFHAVAKGISVVCSA 316

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPYPQTVINTAPW+I+VAASTIDRAF T IT+GNNQT+VGQA Y GK ++NKFY  V
Sbjct: 317 GNSGPYPQTVINTAPWIISVAASTIDRAFRTVITLGNNQTLVGQALYTGK-NVNKFYSFV 375

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G+ I + D+DE SAR C+ G+LNATL RG +V+CFQ++ QR +ATA RTV   GGVGLI
Sbjct: 376 YGESIVSQDSDEESARGCDIGSLNATLARGNVVLCFQTRSQRFSATAIRTVQTVGGVGLI 435

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FAK P+KDV  S G+P ++VD   GTSLLTYM +   P+VKFS TKT +G Q SPEVA+F
Sbjct: 436 FAKSPSKDVTQSMGIPCVEVDLVTGTSLLTYMVSTSKPMVKFSPTKTKVGLQSSPEVAYF 495

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSPSVLKPDIAAPGV+ILA+WSP ++    D +T   +P  NF +ESGTSM+C
Sbjct: 496 SSRGPSSLSPSVLKPDIAAPGVSILAAWSPAASSPTID-MTQKELPPENFMIESGTSMAC 554

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PH+SGIVALL +++PTWSPAAIKSA++TTAS+KDEY  ++VAEGAP+KQADPFDYGGGHV
Sbjct: 555 PHVSGIVALLNSMYPTWSPAAIKSALITTASVKDEYGLNVVAEGAPYKQADPFDYGGGHV 614

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           DPNKAMDPGL+YDM + DYV FLC+MGYN +AI L+ + S    +++   L+NLNLPSI 
Sbjct: 615 DPNKAMDPGLIYDMGMKDYVHFLCSMGYNTTAIHLITK-SPCPKNRNRNLLLNLNLPSII 673

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IP LKKS+ VSR VTNV P  SVY A+V+AP GT VRVEP  L+FNST KKLKFKV F S
Sbjct: 674 IPNLKKSLAVSRTVTNVGPEESVYIAQVEAPPGTNVRVEPWILSFNSTTKKLKFKVFFCS 733

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEF 635
           R R+ GRYSFG+L W DG H VRIPLI+ T+  + 
Sbjct: 734 RQRLLGRYSFGHLLWGDGFHAVRIPLIIGTVTADL 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744744|emb|CBI38006.3| unnamed protein product [Vitis vinifera]

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/635 (69%), Positives = 525/635 (82%), Gaps = 3/635 (0%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES+SFKD+ MG+IP RW+G CQEGE FNRSNCNRKIIGARWY+KGYEA+FGKL
Sbjct: 174 IDTGIWPESDSFKDKGMGKIPSRWHGTCQEGEQFNRSNCNRKIIGARWYIKGYEADFGKL 233

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           ++S  VEFLSPRDAVGHGTHT+S AAG +VK+A+F GLA+GLARGGAP A LA+YK+CW+
Sbjct: 234 DTSGGVEFLSPRDAVGHGTHTASIAAGSLVKNANFRGLARGLARGGAPSAQLAVYKVCWS 293

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGCSSAD+LAAFDDA  DGVDV+S+SLGSS PL+ Y DD ++IGSFHAVAKGISVVCSA
Sbjct: 294 TGGCSSADVLAAFDDAVLDGVDVLSVSLGSSPPLTAYFDDSLAIGSFHAVAKGISVVCSA 353

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPYPQTVINTAPW+I+VAASTIDRAF T IT+GNNQT+VGQA Y GK ++NKFY  V
Sbjct: 354 GNSGPYPQTVINTAPWIISVAASTIDRAFRTVITLGNNQTLVGQALYTGK-NVNKFYSFV 412

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G+ I + D+DE SAR C+ G+LNATL RG +V+CFQ++ QR +ATA RTV   GGVGLI
Sbjct: 413 YGESIVSQDSDEESARGCDIGSLNATLARGNVVLCFQTRSQRFSATAIRTVQTVGGVGLI 472

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FAK P+KDV  S G+P ++VD   GTSLLTYM +   P+VKFS TKT +G Q SPEVA+F
Sbjct: 473 FAKSPSKDVTQSMGIPCVEVDLVTGTSLLTYMVSTSKPMVKFSPTKTKVGLQSSPEVAYF 532

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSPSVLKPDIAAPGV+ILA+WSP ++    D +T   +P  NF +ESGTSM+C
Sbjct: 533 SSRGPSSLSPSVLKPDIAAPGVSILAAWSPAASSPTID-MTQKELPPENFMIESGTSMAC 591

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PH+SGIVALL +++PTWSPAAIKSA++TTAS+KDEY  ++VAEGAP+KQADPFDYGGGHV
Sbjct: 592 PHVSGIVALLNSMYPTWSPAAIKSALITTASVKDEYGLNVVAEGAPYKQADPFDYGGGHV 651

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           DPNKAMDPGL+YDM + DYV FLC+MGYN +AI L+ + S    +++   L+NLNLPSI 
Sbjct: 652 DPNKAMDPGLIYDMGMKDYVHFLCSMGYNTTAIHLITK-SPCPKNRNRNLLLNLNLPSII 710

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IP LKKS+ VSR VTNV P  SVY A+V+AP GT VRVEP  L+FNST KKLKFKV F S
Sbjct: 711 IPNLKKSLAVSRTVTNVGPEESVYIAQVEAPPGTNVRVEPWILSFNSTTKKLKFKVFFCS 770

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEF 635
           R R+ GRYSFG+L W DG H VRIPLI+ T+  + 
Sbjct: 771 RQRLLGRYSFGHLLWGDGFHAVRIPLIIGTVTADL 805

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242045388|ref|XP_002460565.1| hypothetical protein SORBIDRAFT_02g030760 [Sorghum bicolor] gi|241923942|gb|EER97086.1| hypothetical protein SORBIDRAFT_02g030760 [Sorghum bicolor]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/639 (62%), Positives = 502/639 (78%), Gaps = 9/639 (1%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF+D+ +GE+P RW G C  G+ FN SNCNRKIIGA+WY+KGYEAE+GK+
Sbjct: 136 LDTGIWPESASFRDDGIGEVPRRWKGQCVAGDRFNASNCNRKIIGAKWYIKGYEAEYGKM 195

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N++D  EF+S RDAVGHGTHT+STAAG +V DA+F GLA G+ARGGAP A +A+YK+CWA
Sbjct: 196 NTTDIYEFMSARDAVGHGTHTASTAAGALVADANFRGLASGVARGGAPRARIAVYKVCWA 255

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            G C+SAD+LAAFDDA  DGVDV+S+SLG + PL  YVDD++SIGSFHAVA+GI VVCSA
Sbjct: 256 TGDCTSADILAAFDDAIHDGVDVLSVSLGQAPPLPAYVDDVLSIGSFHAVARGIVVVCSA 315

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPY +TVIN+APW++TVAA TIDR F   IT+GNN T VGQ  Y GK    K   IV
Sbjct: 316 GNSGPYSETVINSAPWIVTVAAGTIDRTFLAKITLGNNSTYVGQTLYTGKHP-GKSIRIV 374

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
             +DIA+ +AD+  ARSC +G+LN+TLV+G +V+CFQ++ QRSA+ A  TV  + GVG+I
Sbjct: 375 YAEDIASNNADDTDARSCTAGSLNSTLVKGNVVLCFQTRAQRSASVAVETVKKARGVGVI 434

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+F TKD+  SF +P +QVD+ +GT++L Y  + RNP V+    KT++G+ I PEVA+F
Sbjct: 435 FAQFLTKDIASSFDIPSVQVDYQVGTAILAYTTSMRNPTVQSGSAKTILGELIGPEVAYF 494

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSPSVLKPDIAAPGVNILA+W+P + +          I   NFK++SGTSMSC
Sbjct: 495 SSRGPSSLSPSVLKPDIAAPGVNILAAWTPAAAISSA-------IGSVNFKIDSGTSMSC 547

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISG+VALLK++HP WSPAA+KSA+VTTA+++D Y   IV+E AP+ QA+PFDYGGGHV
Sbjct: 548 PHISGVVALLKSMHPNWSPAAVKSALVTTANVQDTYGFEIVSEAAPYNQANPFDYGGGHV 607

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           DPN+A  PGLVY+M  SDYVRFLC+MGYN SAIS M +   TC   + K  +NLNLPSIT
Sbjct: 608 DPNRAAHPGLVYEMGTSDYVRFLCSMGYNTSAISSMTQQHETCQ-HTPKTQLNLNLPSIT 666

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IPEL+  +TVSR VTNV   +S Y ARV+AP G  V V PS LTFNST + L FKVTF +
Sbjct: 667 IPELRGRLTVSRTVTNVGSASSKYRARVEAPPGVDVTVSPSLLTFNSTMRSLTFKVTFQA 726

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET 639
           +L+VQGRY+FG+L WEDG+H VRIPL+VRT++ +FY  +
Sbjct: 727 KLKVQGRYNFGSLTWEDGVHTVRIPLVVRTMVSKFYVNS 765

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125564467|gb|EAZ09847.1| hypothetical protein OsI_32138 [Oryza sativa Indica Group]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/636 (63%), Positives = 503/636 (79%), Gaps = 9/636 (1%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF+D+ +GE+P RW G C  GE FN SNCNRKIIGA+WYVKGYEAE+GK+
Sbjct: 140 LDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGYEAEYGKM 199

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N+SD  EF+S RDAVGHGTHT+STAAG +V +ASF GLA+G+ARGGA  A LA+YK+CWA
Sbjct: 200 NTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKVCWA 259

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            G C++AD+LAAFDDA  DGV+VIS+SLG + PL  YVDD++SIGSFHAVAKG+ VVCSA
Sbjct: 260 TGDCTAADILAAFDDAIHDGVNVISVSLGQAPPLPAYVDDVLSIGSFHAVAKGVVVVCSA 319

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPY +TVIN+APW++TVAA TIDR F   I +GNN T VGQ  Y+GK   +K   IV
Sbjct: 320 GNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKHP-SKSVRIV 378

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
             +DI++ +AD+  ARSC +G+LNATLV+G +V+CFQ++ QRSA+ A  TV  + GVG+I
Sbjct: 379 YAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVKKARGVGVI 438

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+F TKD+  S  +P +QVD+ +GT++L Y  + RNP+ +FSF KT++G+ ++PEVA+F
Sbjct: 439 FAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVGELVAPEVAYF 498

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSPS+LKPDIAAPGVNILA+WSP + +          I   NFK++SGTSMSC
Sbjct: 499 SSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSA-------IGSVNFKIDSGTSMSC 551

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISG+VALLK++HP WSPAA+KSA+VTTA++ D Y   +V+E AP+  A+PFDYGGGHV
Sbjct: 552 PHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGGGHV 611

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           +PN+A  PGLVYDM VSDY+RFLC+MGYN SAIS M +  TTC     K  +NLN+PSIT
Sbjct: 612 NPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTTCQHMP-KSQLNLNVPSIT 670

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IPEL+  +TVSR VTNV P  S Y ARV+AP G  V V PS LTFNST +KL FKVTF +
Sbjct: 671 IPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLPFKVTFQA 730

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFY 636
           +L+VQGRY+FG+L WEDG H VRIPL+VR II +FY
Sbjct: 731 KLKVQGRYTFGSLTWEDGTHTVRIPLVVRIIISKFY 766

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497505|dbj|BAK05842.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/636 (62%), Positives = 499/636 (78%), Gaps = 9/636 (1%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF+D+ +GE+P RW G C  GE FN SNCNRKIIGA+W++KGY+AE+GK+
Sbjct: 141 LDTGIWPESASFRDDGIGEVPRRWKGQCVAGERFNASNCNRKIIGAKWFIKGYQAEYGKM 200

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N++D  E++S RDAVGHGTHT+STAAG +V DASF GLA G+ARGGAP A LA+YK+CWA
Sbjct: 201 NTADIHEYMSARDAVGHGTHTASTAAGALVPDASFRGLASGVARGGAPRARLAVYKVCWA 260

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            G C+SAD+LAAFD A  DGVDV+S+SLG + PL  YVDD+++IGSFHAV +GI+VVCSA
Sbjct: 261 TGDCTSADILAAFDAAIHDGVDVLSVSLGQAPPLPAYVDDVLAIGSFHAVVRGITVVCSA 320

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPY +TVIN+APWV+TVAA TIDR F   IT+GNN T VGQ  Y+GK        IV
Sbjct: 321 GNSGPYSETVINSAPWVLTVAAGTIDRTFLAKITLGNNSTYVGQTMYSGKHAATSMR-IV 379

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
             +D+++ +AD+  ARSC +G+LNATLV+G +V+CFQ++ QR++  A  TV  + GVG+I
Sbjct: 380 YAEDVSSDNADDSDARSCTAGSLNATLVKGNVVLCFQTRGQRASQVAVETVKKARGVGVI 439

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+F TKD+  +F +P IQVD+ +GT++L Y  + RNP V+FS  KT++G+ I PEVA+F
Sbjct: 440 FAQFLTKDIASAFDIPLIQVDYQVGTAILAYTTSMRNPTVQFSSAKTILGELIGPEVAYF 499

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSL+PS+LKPDI APGVNILASWSP   L          +   NFK++SGTSMSC
Sbjct: 500 SSRGPSSLTPSILKPDITAPGVNILASWSPSVALSSA-------MGPVNFKIDSGTSMSC 552

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISG+ ALLK++HP WSPAA+KSA+VTTA++ DEY   +V+E AP+KQA+PFDYGGGHV
Sbjct: 553 PHISGMAALLKSMHPNWSPAAVKSAMVTTANVHDEYGFEMVSEAAPYKQANPFDYGGGHV 612

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           DPN+A  PGLVYDM  SDYVRFLC+MGYNNSAI+ M +  T C   S K  +NLN+PSIT
Sbjct: 613 DPNRAAHPGLVYDMRPSDYVRFLCSMGYNNSAIASMVQQHTPCQ-HSPKSQLNLNVPSIT 671

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IPEL+  ++VSR VTNV P+ S Y ARV+AP G  V V PS LTFNST  +L FKV F +
Sbjct: 672 IPELRGKLSVSRTVTNVGPVTSKYRARVEAPPGVDVTVSPSLLTFNSTVNRLTFKVMFQA 731

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFY 636
           +L+VQGRY+FG+L WEDG H VRIPL+VRT+I+ FY
Sbjct: 732 KLKVQGRYTFGSLTWEDGTHTVRIPLVVRTMINRFY 767

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480315|ref|NP_001063751.1| Os09g0530800 [Oryza sativa Japonica Group] gi|113631984|dbj|BAF25665.1| Os09g0530800 [Oryza sativa Japonica Group] gi|125606416|gb|EAZ45452.1| hypothetical protein OsJ_30103 [Oryza sativa Japonica Group]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/636 (63%), Positives = 503/636 (79%), Gaps = 9/636 (1%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF+D+ +GE+P RW G C  GE FN SNCNRKIIGA+WYVKGYEAE+GK+
Sbjct: 140 LDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGYEAEYGKM 199

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N+SD  EF+S RDAVGHGTHT+STAAG +V +ASF GLA+G+ARGGA  A LA+YK+CWA
Sbjct: 200 NTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKVCWA 259

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            G C++AD+LAAFDDA  DGVDVIS+SLG + PL  YVDD++SIGSFHAVAKG+ VVCSA
Sbjct: 260 TGDCTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVLSIGSFHAVAKGVVVVCSA 319

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPY +TVIN+APW++TVAA TIDR F   I +GNN T VGQ  Y+GK   +K   IV
Sbjct: 320 GNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKHP-SKSVRIV 378

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
             +DI++ +AD+  ARSC +G+LNATLV+G +V+CFQ++ QRSA+ A  TV  + GVG+I
Sbjct: 379 YAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVKKARGVGVI 438

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+F TKD+  S  +P +QVD+ +GT++L Y  + RNP+ +FSF KT++G+ ++PEVA+F
Sbjct: 439 FAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVGELVAPEVAYF 498

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSPS+LKPDIAAPGVNILA+WSP + +          I   NFK++SGTSMSC
Sbjct: 499 SSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSA-------IGSVNFKIDSGTSMSC 551

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISG+VALLK++HP WSPAA+KSA+VTTA++ D Y   +V+E AP+  A+PFDYGGGHV
Sbjct: 552 PHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGGGHV 611

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           +PN+A  PGLVYDM VSDY+RFLC+MGYN SAIS M +  TT    + K  +NLN+PSIT
Sbjct: 612 NPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTT-CQHTPKSQLNLNVPSIT 670

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IPEL+  +TVSR VTNV P  S Y ARV+AP G  V V PS LTFNST +KL FKVTF +
Sbjct: 671 IPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLPFKVTFQA 730

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFY 636
           +L+V+GRY+FG+L WEDG H VRIPL+VR II +FY
Sbjct: 731 KLKVKGRYTFGSLTWEDGTHTVRIPLVVRIIISKFY 766

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490022|ref|NP_001159267.1| uncharacterized protein LOC100304357 precursor [Zea mays] gi|223943091|gb|ACN25629.1| unknown [Zea mays]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/639 (62%), Positives = 495/639 (77%), Gaps = 9/639 (1%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF+D+ M E P RW G C  G+ FN SNCNRKIIGA+WY+KGYEAE+GK+
Sbjct: 139 LDTGIWPESASFRDDGMSEAPRRWKGQCVAGDRFNVSNCNRKIIGAKWYIKGYEAEYGKM 198

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N++D  EF+S RDAVGHGTHT+STAAG +V  ASF GLA G+ARGGAP A LA+YK+CWA
Sbjct: 199 NTTDIYEFMSARDAVGHGTHTASTAAGALVAGASFRGLAGGVARGGAPRARLAVYKVCWA 258

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            G C+SAD+LAAFDDA  DGVDV+S+SLG + PL  YVDD++SIGSFHAVA+GI VVCSA
Sbjct: 259 TGDCTSADILAAFDDAIHDGVDVLSVSLGQAPPLPAYVDDVLSIGSFHAVARGIVVVCSA 318

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GNSGPY +TVIN+APW++TVAA TIDR F   I +GNN T VGQ  Y+GK   N    I 
Sbjct: 319 GNSGPYSETVINSAPWLVTVAAGTIDRTFLAKIILGNNSTYVGQTLYSGKHPGNSMR-IF 377

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
             +D+A+ +AD+  ARSC +G+LN+TLV+G +V+CFQ++ QRSAA A  TV  + GVG+I
Sbjct: 378 YAEDVASNNADDTDARSCTAGSLNSTLVKGTVVLCFQTRAQRSAAVAVETVKKARGVGVI 437

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
           FA+F TKD+  SF +P  QVD+ +GT++L Y  + RNP V+F   KT++G+ + PEVA+F
Sbjct: 438 FAQFLTKDIASSFDIPCFQVDYQVGTAILAYTTSTRNPTVQFGSAKTILGELMGPEVAYF 497

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGPSSLSP+VLKPDIAAPGVNILA+W+P + +          I    FK++SGTSMSC
Sbjct: 498 SSRGPSSLSPAVLKPDIAAPGVNILAAWTPAAAISSA-------IGSVKFKIDSGTSMSC 550

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHISG+VALLK++HP WSPAA+KSA+VTTAS+ D Y   IV+E AP+ QA+PFDYGGGHV
Sbjct: 551 PHISGVVALLKSMHPNWSPAAVKSALVTTASVHDTYGFEIVSEAAPYNQANPFDYGGGHV 610

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           DPN A  PGLVYDM  SDYVRFLC+MGYN SAIS + +   TC   + K  +NLNLPSI+
Sbjct: 611 DPNSAAHPGLVYDMGTSDYVRFLCSMGYNVSAISSLAQQHETCQ-HTPKTQLNLNLPSIS 669

Query: 541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
           IPEL+  +TVSR VTNV    + Y ARV+AP G  V V PS LTFNST +KL FKVTF +
Sbjct: 670 IPELRGRLTVSRTVTNVGSALTKYRARVEAPPGVDVTVSPSLLTFNSTVRKLTFKVTFQA 729

Query: 601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFYAET 639
           +L+VQGRY FG+L WEDG+H VRIPL+VRT+I +FYA +
Sbjct: 730 KLKVQGRYYFGSLTWEDGVHAVRIPLVVRTMISKFYANS 768

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	639
UNIPROTKB|Q0J050	769	Os09g0530800 "Os09g0530800 pro	0.981	0.815	0.575	5.8e-201
UNIPROTKB|Q7XT43	756	OSJNBb0089K24.4 "OSJNBb0089K24	0.685	0.579	0.428	3.2e-136
TAIR|locus:2127696	765	AT4G10510 "AT4G10510" [Arabido	0.973	0.813	0.431	9.8e-135
TAIR|locus:2037895	774	SBT3.5 "AT1G32940" [Arabidopsi	0.973	0.803	0.431	1.2e-134
TAIR|locus:2127666	775	AT4G10540 "AT4G10540" [Arabido	0.973	0.802	0.420	3.1e-131
TAIR|locus:2037915	773	AT1G32950 "AT1G32950" [Arabido	0.968	0.800	0.422	1.5e-129
TAIR|locus:2037935	777	SBT3.3 "AT1G32960" [Arabidopsi	0.970	0.797	0.419	5.2e-129
TAIR|locus:2127656	747	AT4G10530 "AT4G10530" [Arabido	0.566	0.484	0.402	2.7e-128
TAIR|locus:2119008	772	AT4G21630 "AT4G21630" [Arabido	0.524	0.433	0.448	1.1e-122
TAIR|locus:2119028	766	AT4G21650 "AT4G21650" [Arabido	0.522	0.436	0.443	1.1e-120

UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1945 (689.7 bits), Expect = 5.8e-201, P = 5.8e-201
 Identities = 366/636 (57%), Positives = 462/636 (72%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
             +DTGIWPES SF+D+ +GE+P RW G C  GE FN SNCNRKIIGA+WYVKGYEAE+GK+
Sbjct:   140 LDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGYEAEYGKM 199

Query:    61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
             N+SD  EF+S RDAVGHGTHT+STAAG +V +ASF                LA+YK+CWA
Sbjct:   200 NTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKVCWA 259

Query:   121 PGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVDDIISIGSFHAVAKGISVVCSA 180
              G C++             GVDVI            YVDD++SIGSFHAVAKG+ VVCSA
Sbjct:   260 TGDCTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVLSIGSFHAVAKGVVVVCSA 319

Query:   181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
             GNSGPY +TVIN+APW++TVAA TIDR F   I +GNN T VGQ  Y+GK   +K   IV
Sbjct:   320 GNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKHP-SKSVRIV 378

Query:   241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
               +DI++ +AD+  ARSC +G+LNATLV+G +V+CFQ++ QRSA+ A  TV  + GVG+I
Sbjct:   379 YAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVKKARGVGVI 438

Query:   301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
             FA+F TKD+  S  +P +QVD+ +GT++L Y  + RNP+ +FSF KT++G+ ++PEVA+F
Sbjct:   439 FAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVGELVAPEVAYF 498

Query:   361 XXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
                        +LKPDIAAPGVNILA+WSP + +          I   NFK++SGTSMSC
Sbjct:   499 SSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSA-------IGSVNFKIDSGTSMSC 551

Query:   421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
             PHISG+VALLK++HP WSPAA+KSA+VTTA++ D Y   +V+E AP+  A+PFDYGGGHV
Sbjct:   552 PHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGGGHV 611

Query:   481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
             +PN+A  PGLVYDM VSDY+RFLC+MGYN SAIS M +  TTC   + K  +NLN+PSIT
Sbjct:   612 NPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTTCQH-TPKSQLNLNVPSIT 670

Query:   541 IPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYS 600
             IPEL+  +TVSR VTNV P  S Y ARV+AP G  V V PS LTFNST +KL FKVTF +
Sbjct:   671 IPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLPFKVTFQA 730

Query:   601 RLRVQGRYSFGNLFWEDGIHVVRIPLIVRTIIDEFY 636
             +L+V+GRY+FG+L WEDG H VRIPL+VR II +FY
Sbjct:   731 KLKVKGRYTFGSLTWEDGTHTVRIPLVVRIIISKFY 766

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q7XT43 OSJNBb0089K24.4 "OSJNBb0089K24.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 883 (315.9 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
 Identities = 211/492 (42%), Positives = 292/492 (59%)

Query:   164 IGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG 223
             +G+ H VA GI+VV SAGN GP  QTV N++PW++TVAA+T+DR+FP  IT+GNN+  V 
Sbjct:   298 MGTLHVVANGIAVVYSAGNDGPIAQTVENSSPWLLTVAAATMDRSFPVVITLGNNEKFVA 357

Query:   224 QAFY-NGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQ- 281
             Q+F   G    ++F       +I  +D D     +C +  ++ T V+G IV CF ++F  
Sbjct:   358 QSFVVTGSA--SQF------SEIQMYDND-----NCNADNIDNT-VKGMIVFCFITKFDM 403

Query:   282 ----RSAATAARTVLDSGGVGLIFAKFPT----KDVHFSFGVPYIQVDFAIGTSLLTYME 333
                 R   T A  V   GG G+IF K+ T    ++   +F +P++ VD+ I   +  Y+ 
Sbjct:   404 ENYDRIINTVASKVASKGGRGVIFPKYSTDLFLREDLITFDIPFVLVDYEISYRIRQYII 463

Query:   334 ANRN---PIVKFSFTKTVIGQQIS-PEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWS 389
              N N   P  K S TKT++G + S P++A F           VLKPDIAAPGV ILA+ S
Sbjct:   464 NNENGNIPKAKISLTKTMVGSENSAPKIAAFSSRGPSYIYPGVLKPDIAAPGVAILAA-S 522

Query:   390 PVSNLEQTDHVTPNY--IPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIV 447
             P  N       TP +  +P   ++ +SGTSM+CPH+SGI+A+LK++HP WSPAA+KSAI+
Sbjct:   523 P--N-------TPEFKGVP---YRFDSGTSMACPHVSGIIAVLKSLHPEWSPAALKSAIM 570

Query:   448 TTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMG 507
             TTA+  D     + A G   K ADPFDYG G V+P  A DPGL+YD+   DY++F   MG
Sbjct:   571 TTANTFDNNGMPMQANGRVPKIADPFDYGAGFVNPIMAADPGLIYDINPLDYLKFFNCMG 630

Query:   508 YNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSV-YTA 566
                  +   +  +TT   K +  +++LNLPSI IP L+ S T  R VTNV     V Y A
Sbjct:   631 ----GLGSQDNCTTT---KGS--VIDLNLPSIAIPNLRTSETAVRTVTNVGVQQEVVYKA 681

Query:   567 RVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDG-IHVVRIP 625
              +  PAG  + VEPS L F+  +K   FKVTF +  +VQG Y+FG+L W DG  H VRIP
Sbjct:   682 FLDPPAGIEMAVEPSELVFSKDKKDQSFKVTFKATRKVQGDYTFGSLAWHDGGSHWVRIP 741

Query:   626 LIVRTIIDEFYA 637
             + V  +I+E Y+
Sbjct:   742 IAVHIVIEEIYS 753

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

TAIR|locus:2127696 AT4G10510 "AT4G10510" [Arabidopsis thaliana (taxid:3702)]

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 279/647 (43%), Positives = 390/647 (60%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
             +D+G+WPESE F D  +G +P  W G C+ GE FN S+CN+K+IGA++++  + A     
Sbjct:   134 IDSGVWPESEVFNDNEIGPVPSHWKGGCESGEDFNSSHCNKKLIGAKYFINAFLATHESF 193

Query:    61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
             NSS+ ++F+SPR   GHGTH ++ A G  V + S+                +A+YK CW 
Sbjct:   194 NSSESLDFISPRGYNGHGTHVATIAGGSYVPNTSYKGLAGGTVRGGAPRARIAVYKTCWY 253

Query:   121 P----GGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXX-XTYVDDIISIGSFHAVAKGIS 175
                    CSS             GVDV+            T V D I+ G+FHAV KGI+
Sbjct:   254 LDLDIAACSSADILKAMDEAIHDGVDVLSLSLGFEPLYPETDVRDGIATGAFHAVLKGIT 313

Query:   176 VVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNK 235
             VVC+AGN+GP  QTV NTAPW++TVAA+T+DR+F T +T+GNN+ ++GQA Y G E    
Sbjct:   314 VVCAAGNAGPAAQTVGNTAPWILTVAATTLDRSFVTPMTLGNNKVILGQAIYTGTEV--G 371

Query:   236 FYPIVIGKDIATFDADEGSARSCESGTLNAT-LVRGKIVICF-QSQFQRSAATAARTVLD 293
             F  +V  ++    +++E  + +CE   +N+   + GK+V+CF +S +  S   AA  V  
Sbjct:   372 FTSLVYPENPG--NSNESFSGTCERLLINSNRTMAGKVVLCFTESPYSISVTRAAHYVKR 429

Query:   294 SGGVGLIFAKFPTKDVHFSFG-VPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQ 352
             +GG+G+I A  P   +       P + VD+ +GT +L Y+ +N +P+VK   ++T+IGQ 
Sbjct:   430 AGGLGVIIAGQPGNVLRPCLDDFPCVAVDYELGTYILFYIRSNGSPVVKIQPSRTLIGQP 489

Query:   353 ISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKV 412
             +  +VA F           +LKPDIAAPGV+ILA+         T + T N      F  
Sbjct:   490 VGTKVASFSSRGPNPISAAILKPDIAAPGVSILAA--------TTTNTTFN---DRGFIF 538

Query:   413 ESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADP 472
              SGTSM+ P ISGIVALLKA+HP WSPAAI+SAIVTTA   D + + I AEG+P K ADP
Sbjct:   539 LSGTSMATPTISGIVALLKALHPDWSPAAIRSAIVTTAWRTDPFGEQIFAEGSPRKPADP 598

Query:   473 FDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLV 532
             FDYGGG V+P KA  PGLVYD+ + DYV ++C++GYN ++IS +    T C+      L 
Sbjct:   599 FDYGGGLVNPEKATKPGLVYDLGLEDYVLYMCSVGYNETSISQLVGKGTVCSYPKPSVL- 657

Query:   533 NLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKL 592
             + NLPSITIP LK+ +T+ R +TNV P+ SVY   V+ P GT V V P TL FNST K++
Sbjct:   658 DFNLPSITIPNLKEEVTLPRTLTNVGPLESVYRVAVEPPLGTQVTVTPETLVFNSTTKRV 717

Query:   593 KFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRT-IIDEFYAE 638
              FKV+  +  ++   Y FG+L W D +H V IPL VRT ++  +Y E
Sbjct:   718 SFKVSVSTTHKINTGYYFGSLTWSDSLHNVTIPLSVRTQLLPYYYDE 764

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 280/649 (43%), Positives = 390/649 (60%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
             +DTG+WPESESF D  +G IP  W G C+ GE F  +NCNRK+IGA++++ G+ AE    
Sbjct:   141 IDTGVWPESESFNDNGVGPIPSHWKGGCESGEKFISTNCNRKLIGAKYFINGFLAENEGF 200

Query:    61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICW- 119
             N+++  +++S RD +GHGTHT+S A G  V + S+                +AIYK CW 
Sbjct:   201 NTTESRDYISARDFIGHGTHTASIAGGSFVPNISYKGLAGGNLRGGAPRARIAIYKACWY 260

Query:   120 ----APGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVD--DIISIGSFHAVAKG 173
                     CSS             GVDV+              D  D I+ G+FHAVAKG
Sbjct:   261 VDQLGAVACSSSDILKAMDESMHDGVDVLSLSLGAQIPLYPETDLRDRIATGAFHAVAKG 320

Query:   174 ISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDL 233
             I VVC+ GNSGP  QTV+NTAPW+ITVAA+T+DR+FPT IT+GN + ++GQA Y G+E L
Sbjct:   321 IIVVCAGGNSGPAAQTVLNTAPWIITVAATTLDRSFPTPITLGNRKVILGQALYTGQE-L 379

Query:   234 NKFYPIVIGKDIATFDADEGSARSCESGTLNAT-LVRGKIVICFQSQFQRSAAT-AARTV 291
               F  +V  ++ A F  +E  +  CE   LN    + GK+V+CF +    +A + AA  V
Sbjct:   380 G-FTSLVYPEN-AGF-TNETFSGVCERLNLNPNRTMAGKVVLCFTTNTLFTAVSRAASYV 436

Query:   292 LDSGGVGLIFAKFPTKDVH-FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIG 350
               +GG+G+I A+ P  ++       P + +D+ +GT +L Y+ + R+P+VK   ++T++G
Sbjct:   437 KAAGGLGVIIARNPGYNLTPCRDDFPCVAIDYELGTDVLLYIRSTRSPVVKIQPSRTLVG 496

Query:   351 QQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNF 410
             Q +  +VA F           +LKPDI APGV+ILA+ SP SN                F
Sbjct:   497 QPVGTKVATFSSRGPNSISPAILKPDIGAPGVSILAATSPDSNSSVG-----------GF 545

Query:   411 KVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQA 470
              + +GTSM+ P ++G+VALLKA+HP WSPAA +SAIVTTA   D + + I AEG+  K A
Sbjct:   546 DILAGTSMAAPVVAGVVALLKALHPNWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKVA 605

Query:   471 DPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKF 530
             DPFDYGGG V+P KA DPGL+YDM   DY+ +LC+ GYN+S+I+ +    T C+   T  
Sbjct:   606 DPFDYGGGIVNPEKAADPGLIYDMGPRDYILYLCSAGYNDSSITQLVGNVTVCSTPKTSV 665

Query:   531 LVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRK 590
             L ++NLPSITIP+LK  +T++R VTNV  ++SVY   V+ P G  V V P TL FNS  K
Sbjct:   666 L-DVNLPSITIPDLKDEVTLTRTVTNVGTVDSVYKVVVEPPLGIQVVVAPETLVFNSKTK 724

Query:   591 KLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRT-IIDEFYAE 638
              + F V   +  ++   + FGNL W D +H V IP+ VRT I+  +Y E
Sbjct:   725 NVSFTVRVSTTHKINTGFYFGNLIWTDSMHNVTIPVSVRTQILQNYYDE 773

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2127666 AT4G10540 "AT4G10540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
 Identities = 273/649 (42%), Positives = 385/649 (59%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
             +D+G+WPESE F D  +G +P  W G C  GE F  S CN+K+IGA++++ G+ A     
Sbjct:   142 VDSGVWPESEVFNDNGIGPVPSHWKGGCVSGENFTSSQCNKKLIGAKYFINGFLATHESF 201

Query:    61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
             NS++ ++F+SPRD  GHGTH ++ A G  V   S+                +A+YK CW 
Sbjct:   202 NSTESLDFISPRDRSGHGTHVATIAGGSYVPSISYKGLAGGTVRGGAPRARIAMYKACWY 261

Query:   121 P-----GGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXX--TYVDDIISIGSFHAVAKG 173
                     CSS             GVDV+             T V  +I+ G+FHAV KG
Sbjct:   262 LDRFDINTCSSADILKAMDEAMHDGVDVLSLSIGYRFPYFPETDVRAVIATGAFHAVLKG 321

Query:   174 ISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDL 233
             I+VVCS GNSGP  QTV NTAPW++TVAA+T+DR+FPT IT+GNN+ ++GQA Y G E L
Sbjct:   322 ITVVCSGGNSGPAAQTVGNTAPWILTVAATTLDRSFPTPITLGNNKLILGQAMYTGPE-L 380

Query:   234 NKFYPIVIGKDIATFDADEGSARSCESGTLNAT-LVRGKIVICFQSQFQR-SAATAARTV 291
               F  +V  ++    +++E  +  CE    N+   + GK+V+CF +  +  + ++A   V
Sbjct:   381 G-FTSLVYPENPG--NSNESFSGDCELLFFNSNHTMAGKVVLCFTTSTRYITVSSAVSYV 437

Query:   292 LDSGGVGLIFAKFPTKDVH-FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIG 350
              ++GG+G+I A+ P  ++       P + VD+ +GT +L Y+ +   P+VK   +KT++G
Sbjct:   438 KEAGGLGVIVARNPGDNLSPCEDDFPCVAVDYELGTDILLYIRSTGLPVVKIQPSKTLVG 497

Query:   351 QQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNF 410
             Q +  +VA F           +LKPDIAAPGV+ILA+ +  +N    D           F
Sbjct:   498 QPVGTKVADFSSRGPNSIEPAILKPDIAAPGVSILAATT--TNKTFNDR---------GF 546

Query:   411 KVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQA 470
                SGTSM+ P ISG+VALLKA+H  WSPAAI+SAIVTTA   D + + I AEG+P K A
Sbjct:   547 IFLSGTSMAAPTISGVVALLKALHRDWSPAAIRSAIVTTAWRTDPFGEQIFAEGSPRKLA 606

Query:   471 DPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKF 530
             DPFDYGGG V+P KA  PGLVYD+ + DYV ++C++GYN ++IS +    T C++     
Sbjct:   607 DPFDYGGGLVNPEKAAKPGLVYDLGLEDYVLYMCSVGYNETSISQLVGKGTVCSNPKPSV 666

Query:   531 LVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRK 590
             L + NLPSITIP LK  +T++R +TNV  + SVY   ++ P G  V V P TL FNST K
Sbjct:   667 L-DFNLPSITIPNLKDEVTLTRTLTNVGQLESVYKVVIEPPIGIQVTVTPETLLFNSTTK 725

Query:   591 KLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRT-IIDEFYAE 638
             ++ FKV   +  ++   Y FG+L W D +H V IPL VRT I+  +Y E
Sbjct:   726 RVSFKVKVSTTHKINTGYFFGSLTWSDSLHNVTIPLSVRTQILQNYYDE 774

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2037915 AT1G32950 "AT1G32950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 275/651 (42%), Positives = 382/651 (58%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
             +DTG+WPESESF D  +G +P  W G C+ GE F  +NCNRK+IGA++++ G+ AE  + 
Sbjct:   141 IDTGVWPESESFNDYGVGPVPSHWKGGCEPGENFISTNCNRKLIGAKYFINGFLAE-NQF 199

Query:    61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICW- 119
             N+++  +++S RD  GHGTH +S A G  V + S+                +A+YK CW 
Sbjct:   200 NATESPDYISARDFDGHGTHVASIAGGSFVPNVSYKGLGRGTLRGGAPRARIAMYKACWY 259

Query:   120 ---APG-GCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVD--DIISIGSFHAVAKG 173
                  G  CS              GVDV+           +  D  D I+ G+FHAVAKG
Sbjct:   260 INELDGVTCSFSDIMKAIDEAIHDGVDVLSISLGGRVPLNSETDLRDGIATGAFHAVAKG 319

Query:   174 ISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKE-- 231
             I VVC+ GN+GP  QTV+NTAPW++TVAA+T+DR+F T I +GNNQ ++GQA Y G E  
Sbjct:   320 IVVVCAGGNAGPSSQTVVNTAPWILTVAATTLDRSFATPIILGNNQVILGQAMYIGPELG 379

Query:   232 DLNKFYPIVIGKDIATFDADEGSARSCESGTLNAT-LVRGKIVICFQSQFQRSA-ATAAR 289
               +  YP   G  I TF         CES  LN+   + GK+V+CF +    +  +TAA 
Sbjct:   380 FTSLVYPEDPGNSIDTFSG------VCESLNLNSNRTMAGKVVLCFTTARDFTVVSTAAS 433

Query:   290 TVLDSGGVGLIFAKFPTKDVH-FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTV 348
              V  +GG+GLI A+ P  ++   S   P + +D  +GT +L Y+    +P+VK   ++T+
Sbjct:   434 IVKAAGGLGLIIARNPGYNLAPCSDDFPCVAIDNELGTDILFYIRYTGSPVVKIQPSRTL 493

Query:   349 IGQQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQF 408
             +G+ +  +VA F           +LKPDIAAPGV+ILA+ SP   L              
Sbjct:   494 VGEPVGTKVATFSSRGPNSISPAILKPDIAAPGVSILAATSPNDTLNAG----------- 542

Query:   409 NFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHK 468
              F + SGTSM+ P ISG++ALLK++HP WSPAA +SAIVTTA   D + + I AE +  K
Sbjct:   543 GFVMRSGTSMAAPVISGVIALLKSLHPDWSPAAFRSAIVTTAWRTDPFGEQIAAESSSLK 602

Query:   469 QADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKST 528
               DPFDYGGG V+P KA +PGL+ DM+  DYV +LC+ GYN+S+IS +    T C++   
Sbjct:   603 VPDPFDYGGGLVNPEKAAEPGLILDMDSQDYVLYLCSAGYNDSSISRLVGKVTVCSNPKP 662

Query:   529 KFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNST 588
               L ++NLPSITIP LK  +T++R VTNV P++SVY   V+ P G  V V P TL FNS 
Sbjct:   663 SVL-DINLPSITIPNLKDEVTLTRTVTNVGPVDSVYKVLVEPPLGIQVVVTPETLVFNSK 721

Query:   589 RKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRT-IIDEFYAE 638
              K + F V   +  ++   + FG+L W D IH V IP+ VRT I+  +Y E
Sbjct:   722 TKSVSFTVIVSTTHKINTGFYFGSLTWTDSIHNVVIPVSVRTQILQNYYDE 772

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)]

 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 273/651 (41%), Positives = 376/651 (57%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
             +DTG+WPESESF D  +G IP +W G C+ GE F  ++CNRK+IGA++++ G+ AE    
Sbjct:   144 IDTGVWPESESFNDNGVGPIPRKWKGGCESGENFRSTDCNRKLIGAKYFINGFLAENKGF 203

Query:    61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICW- 119
             N+++  +++S RD  GHGTH +S A G  V + S+                +A+YK CW 
Sbjct:   204 NTTESRDYISARDFDGHGTHVASIAGGSFVPNVSYKGLAGGTLRGGAPRARIAMYKACWF 263

Query:   120 ---APG-GCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVD--DIISIGSFHAVAKG 173
                  G  CS              GVDV+           +  D  D  + G FHAVAKG
Sbjct:   264 HEELKGVTCSDSDIMKAIDEAIHDGVDVLSISLVGQIPLNSETDIRDEFATGLFHAVAKG 323

Query:   174 ISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKE-D 232
             I VVC+ GN GP  QTV+N APW++TVAA+T+DR+FPT IT+GNN+ ++GQA Y G E  
Sbjct:   324 IVVVCAGGNDGPAAQTVVNIAPWILTVAATTLDRSFPTPITLGNNKVILGQATYTGPELG 383

Query:   233 LNKF-YPIVIGKDIATFDADEGSARSCESGTLNATLVRG-KIVICFQSQFQRSAAT-AAR 289
             L    YP     +  TF         CES  LN       K+V+CF +    +A + AA 
Sbjct:   384 LTSLVYPENARNNNETFSG------VCESLNLNPNYTMAMKVVLCFTASRTNAAISRAAS 437

Query:   290 TVLDSGGVGLIFAKFPTKDVH-FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTV 348
              V  +GG+GLI ++ P   +   +   P + VD+ +GT +L+Y+ + R+P+VK   ++T+
Sbjct:   438 FVKAAGGLGLIISRNPVYTLSPCNDDFPCVAVDYELGTDILSYIRSTRSPVVKIQRSRTL 497

Query:   349 IGQQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQF 408
              GQ +  +V  F           +LKPDIAAPGV ILA+ SP   L              
Sbjct:   498 SGQPVGTKVVNFSSRGPNSMSPAILKPDIAAPGVRILAATSPNDTLNVG----------- 546

Query:   409 NFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHK 468
              F + SGTSM+ P ISG++ALLKA+HP WSPAA +SAIVTTA   D + + I AEG+  K
Sbjct:   547 GFAMLSGTSMATPVISGVIALLKALHPEWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRK 606

Query:   469 QADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKST 528
              +DPFDYGGG V+P KA +PGL+YDM   DY+ +LC+ GYN+S+IS +    T C++   
Sbjct:   607 VSDPFDYGGGIVNPEKAAEPGLIYDMGPQDYILYLCSAGYNDSSISQLVGQITVCSNPKP 666

Query:   529 KFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNST 588
               L ++NLPSITIP LK  +T++R VTNV  ++SVY   V+ P G  V V P TL FNS 
Sbjct:   667 SVL-DVNLPSITIPNLKDEVTLTRTVTNVGLVDSVYKVSVEPPLGVRVVVTPETLVFNSK 725

Query:   589 RKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRT-IIDEFYAE 638
                + F V   +  ++   Y FG+L W D +H V IPL VRT I+  +Y E
Sbjct:   726 TISVSFTVRVSTTHKINTGYYFGSLTWTDSVHNVVIPLSVRTQILQNYYDE 776

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

TAIR|locus:2127656 AT4G10530 "AT4G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
 Identities = 152/378 (40%), Positives = 216/378 (57%)

Query:     1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRS-NCNRKIIGARWYVKGYEAEFGK 59
             +DTG+WPESE F D+  G IP RW G C+ GE FN S +CNRK+IGA++++    A+FG 
Sbjct:   141 IDTGVWPESEMFNDKGYGPIPSRWKGGCESGELFNGSIHCNRKLIGAKYFIDANNAQFGV 200

Query:    60 LNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICW 119
             LN ++  ++LSPRD  GHGTH +ST  G  + + S+                +A+YK CW
Sbjct:   201 LNKTENPDYLSPRDFNGHGTHVASTIGGSFLPNVSYLGLGRGTARGGAPGVHIAVYKACW 260

Query:   120 APGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVD--DIISIGSFHAVAKGISVV 177
                GCS              GVD++              D  ++ S+G+FHAVAKGI VV
Sbjct:   261 VQRGCSGADVLKAMDEAIHDGVDILSLSLQTSVPLFPETDARELTSVGAFHAVAKGIPVV 320

Query:   178 CSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFY 237
              +A N+GP  QT+ N APWV+TVAA+T DR+FPTAIT+GNN T++GQA + G E L  F 
Sbjct:   321 AAASNAGPTAQTLSNVAPWVLTVAATTQDRSFPTAITLGNNITILGQAIFGGSE-LG-F- 377

Query:   238 PIVIGKDIATFDADEGSARSCESGTLNA-TLVRGKIVICFQSQFQRSAATAARTVLDSGG 296
                +G    T+     S   CE  + N  + + GK+V+CF +    +AA  A  V+++GG
Sbjct:   378 ---VG---LTYPESPLSG-DCEKLSANPKSAMEGKVVLCFAASTPSNAAITA--VINAGG 428

Query:   297 VGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPE 356
             +GLI A+ PT  +      PY+ VDF +GT +L Y+ + R+PIV    ++T+ GQ +S +
Sbjct:   429 LGLIMARNPTHLLRPLRNFPYVSVDFELGTDILFYIRSTRSPIVNIQASRTLFGQSVSTK 488

Query:   357 VAFFXXXXXXXXXXXVLK 374
             VA F           +LK
Sbjct:   489 VATFSSRGPNSVSPAILK 506

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2119008 AT4G21630 "AT4G21630" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
 Identities = 157/350 (44%), Positives = 215/350 (61%)

Query:   285 ATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSF 344
             +T   ++   G V +I AK P   +     +PYI  D+ IGT +L Y+   R+P V+ S 
Sbjct:   434 STHPSSIAGRGVVAVILAKKPDDLLARYNSIPYIFTDYEIGTHILQYIRTTRSPTVRISA 493

Query:   345 TKTVIGQQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNY 404
               T+ GQ    +VA F           +LKPDIAAPGV+ILA+ SP+          P+ 
Sbjct:   494 ATTLNGQPAMTKVAEFSSRGPNSVSPAILKPDIAAPGVSILAAVSPLD---------PD- 543

Query:   405 IPQFN-FKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAE 463
                FN F + SGTSMS P +SGI+ALLK++HP WSPAA++SA+VTTA       + I A+
Sbjct:   544 --AFNGFGLYSGTSMSTPVVSGIIALLKSLHPNWSPAAMRSALVTTAWRTSPSGEPIFAQ 601

Query:   464 GAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTC 523
             G+  K ADPFDYGGG V+P+KA  PGLVYDM + DY+ ++C+ GY +S+IS +    T C
Sbjct:   602 GSNKKLADPFDYGGGLVNPDKAAQPGLVYDMGIKDYINYMCSAGYIDSSISRVLGKKTKC 661

Query:   524 NDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTL 583
                    L ++NLPSITIP L+K +T++R VTNV P+ SVY A +++P G T+ V P+TL
Sbjct:   662 TIPKPSIL-DINLPSITIPNLEKEVTLTRTVTNVGPIKSVYKAVIESPLGITLTVNPTTL 720

Query:   584 TFNSTRKK-LKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII 632
              FNS  K+ L F V   +  +V   Y FG+L W DG+H V IP+ V+T I
Sbjct:   721 VFNSAAKRVLTFSVKAKTSHKVNSGYFFGSLTWTDGVHDVIIPVSVKTTI 770

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2119028 AT4G21650 "AT4G21650" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 154/347 (44%), Positives = 212/347 (61%)

Query:   287 AARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTK 346
             +A  +   G   +I A+ P   +    GVP I  D+  GT +L Y+   R+P V+ +   
Sbjct:   430 SATPIAGKGVAAVILAQKPDDLLSRCNGVPCIFPDYEFGTEILKYIRTTRSPTVRITAAT 489

Query:   347 TVIGQQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIP 406
             T+ GQ  + +VA F           +LKPDIAAPGV+ILA+ SP++  EQ          
Sbjct:   490 TLTGQPATTKVAAFSCRGPNSVSPAILKPDIAAPGVSILAAISPLNPEEQN--------- 540

Query:   407 QFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAP 466
                F + SGTSMS P +SGI+ALLK++HP WSPAA++SA+VTTA       + I AEG+ 
Sbjct:   541 --GFGLLSGTSMSTPVVSGIIALLKSLHPKWSPAAVRSALVTTAWRTSPSGEPIFAEGSN 598

Query:   467 HKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDK 526
              K ADPFDYGGG V+P KA  PGLVYDM + DY++++C+ GYN+S+IS +    T C   
Sbjct:   599 KKLADPFDYGGGLVNPEKAAKPGLVYDMGIVDYIKYMCSAGYNDSSISRVLGKKTNCPIP 658

Query:   527 STKFLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFN 586
                 L ++NLPSITIP L+K +T++R VTNV P+ SVY A +++P G T+ V P+TL F 
Sbjct:   659 KPSML-DINLPSITIPNLEKEVTLTRTVTNVGPIKSVYRAVIESPLGITLTVNPTTLVFK 717

Query:   587 STRKK-LKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII 632
             S  K+ L F V   +  +V   Y FG+L W DG+H V IP+ V+T I
Sbjct:   718 SAAKRVLTFSVKAKTSHKVNTGYFFGSLTWSDGVHDVIIPVSVKTTI 764

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IV000488 hypothetical protein (739 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	639
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	1e-101
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	4e-31
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	4e-26
cd02120	126	cd02120, PA_subtilisin_like, PA_subtilisin_like: P	2e-25
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	4e-25
cd07487	264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	9e-19
cd00306	241	cd00306, Peptidases_S8_S53, Peptidase domain in th	1e-16
cd07487	264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	9e-16
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	4e-15
cd07490	254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	9e-14
cd07477	229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	2e-13
cd07475	346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	3e-13
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	4e-13
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	4e-13
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	3e-12
cd07477	229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	3e-12
cd07473	259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	3e-12
cd00306	241	cd00306, Peptidases_S8_S53, Peptidase domain in th	1e-11
cd04077	255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	1e-11
cd07481	264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	1e-11
cd04842	293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	4e-11
cd07493	261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	4e-10
cd07490	254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	6e-10
cd07482	294	cd07482, Peptidases_S8_Lantibiotic_specific_protea	6e-10
cd07478	455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	7e-10
cd07484	260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	2e-09
cd07484	260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	3e-09
cd07475	346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	4e-09
cd07496	285	cd07496, Peptidases_S8_13, Peptidase S8 family dom	7e-09
cd07473	259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	4e-08
cd04077	255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	1e-07
cd07478	455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	1e-07
cd07481	264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	4e-07
cd04842	293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	7e-07
cd05562	275	cd05562, Peptidases_S53_like, Peptidase domain in	1e-06
cd07498	242	cd07498, Peptidases_S8_15, Peptidase S8 family dom	5e-06
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	5e-06
cd07480	297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	8e-06
cd04848	267	cd04848, Peptidases_S8_Autotransporter_serine_prot	8e-06
cd07498	242	cd07498, Peptidases_S8_15, Peptidase S8 family dom	9e-06
cd07480	297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	1e-05
COG1404	508	COG1404, AprE, Subtilisin-like serine proteases [P	1e-05
cd07493	261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	2e-05
PTZ00262	639	PTZ00262, PTZ00262, subtilisin-like protease; Prov	3e-05
cd07497	311	cd07497, Peptidases_S8_14, Peptidase S8 family dom	7e-05
cd07485	273	cd07485, Peptidases_S8_Fervidolysin_like, Peptidas	9e-05
cd07492	222	cd07492, Peptidases_S8_8, Peptidase S8 family doma	1e-04
cd04857	412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	2e-04
cd07479	255	cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa	2e-04
cd04848	267	cd04848, Peptidases_S8_Autotransporter_serine_prot	3e-04
COG1404	508	COG1404, AprE, Subtilisin-like serine proteases [P	3e-04
cd07496	285	cd07496, Peptidases_S8_13, Peptidase S8 family dom	0.001
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	0.001
cd04056	361	cd04056, Peptidases_S53, Peptidase domain in the S	0.001
cd04847	291	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas	0.002
cd07483	291	cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti	0.002
cd07497	311	cd07497, Peptidases_S8_14, Peptidase S8 family dom	0.003
cd05561	239	cd05561, Peptidases_S8_4, Peptidase S8 family doma	0.003
cd07494	298	cd07494, Peptidases_S8_10, Peptidase S8 family dom	0.004
cd07494	298	cd07494, Peptidases_S8_10, Peptidase S8 family dom	0.004

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score =  310 bits (796), Expect = e-101
 Identities = 110/205 (53%), Positives = 130/205 (63%), Gaps = 5/205 (2%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPE  SF D   G  P  W G C  GE FN  +CN K+IGAR++  GY+A  G  
Sbjct: 37  LDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFN 96

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           +     E+ SPRD  GHGTHT+STAAG +V +AS  G A G A G AP A +A+YK+CW 
Sbjct: 97  SDG---EYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWP 153

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
            GGC  +D+LAA D A  DGVDVIS S+G   P     +D I+I   HAV  GI V  SA
Sbjct: 154 DGGCFGSDILAAIDQAIADGVDVISYSIGGGSPD--PYEDPIAIAFLHAVEAGIFVAASA 211

Query: 181 GNSGPYPQTVINTAPWVITVAASTI 205
           GNSGP   TV N APWV TVAAST+
Sbjct: 212 GNSGPGASTVPNVAPWVTTVAASTL 236

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score =  123 bits (310), Expect = 4e-31
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 9/82 (10%)

Query: 371 SVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQF-NFKVESGTSMSCPHISGIVAL 429
           S LKPDIAAPGV+ILA+W+P                +  +F   SGTSM+ PH++G+ AL
Sbjct: 234 STLKPDIAAPGVDILAAWTPEG--------ADPGDARGEDFAFISGTSMASPHVAGVAAL 285

Query: 430 LKAIHPTWSPAAIKSAIVTTAS 451
           LK+ HP WSPAAIKSA++TTA 
Sbjct: 286 LKSAHPDWSPAAIKSALMTTAY 307

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score =  108 bits (271), Expect = 4e-26
 Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 13/143 (9%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           S  DA GHGTH +   AG  V   +  G+A        P A L  YK+    G  ++  +
Sbjct: 57  SAGDATGHGTHVAGIIAGNGVNVGTIKGVA--------PKADLYAYKVLGPGGSGTTDVI 108

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT 189
           +AA + A  DG+DVI+LSLGSS       DD  +I   +AV  G+ VV +AGNSGP P T
Sbjct: 109 IAAIEQAVDDGMDVINLSLGSS---VNGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYT 165

Query: 190 VIN--TAPWVITVAASTIDRAFP 210
           + +  TAP  ITV AST+     
Sbjct: 166 IGSPATAPSAITVGASTVADVAE 188

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

>gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

 Score =  100 bits (252), Expect = 2e-25
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 213 ITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKI 272
           +T+GN +T+VGQ+ Y G     K YP+V        ++ +  A  C  G+L+ + V+GKI
Sbjct: 2   VTLGNGKTIVGQSLYPGN---LKTYPLVYKSA----NSGDVDASLCLPGSLDPSKVKGKI 54

Query: 273 VICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD---VHFSFGVPYIQVDFAIGTSLL 329
           V+C +     S       V  +GG G+I A  PT     V  +  +P + VD+  GT++L
Sbjct: 55  VLCDRGGNT-SRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAIL 113

Query: 330 TYMEANRNPIVK 341
           +Y+ +  NP   
Sbjct: 114 SYINSTSNPTAT 125

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score =  105 bits (264), Expect = 4e-25
 Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 25/139 (17%)

Query: 347 TVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIP 406
           TV     +  V   SSRGP + S S +KPDI APGV+I+++              P    
Sbjct: 182 TVADVAEADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTA-------------PGS-- 225

Query: 407 QFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAP 466
              +   SGTSM+ PH++G  ALLK  HP WSPA IK+A++ TA           ++G  
Sbjct: 226 GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTA------KPLYDSDG-- 277

Query: 467 HKQADPFDYGGGHVDPNKA 485
                    G G VD  +A
Sbjct: 278 -VVYPVSRQGAGRVDALRA 295

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1

 Score = 86.1 bits (214), Expect = 9e-19
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGT 416
           +++FSSRGP       +KPD+ APG NI++  SP  N        P       +   SGT
Sbjct: 180 ISYFSSRGP--TGDGRIKPDVVAPGENIVSCRSPGGN--------PGAGVGSGYFEMSGT 229

Query: 417 SMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450
           SM+ PH+SG +ALL   +P  +P  +K  +  TA
Sbjct: 230 SMATPHVSGAIALLLQANPILTPDEVKCILRDTA 263

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264

>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families

 Score = 79.6 bits (196), Expect = 1e-16
 Identities = 52/150 (34%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 63  SDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG 122
            +      P D  GHGTH +   A              G   G AP A L   K+    G
Sbjct: 32  DNENGPTDPDDGNGHGTHVAGIIAASAN---------NGGGVGVAPGAKLIPVKVLDGDG 82

Query: 123 GCSSADLLAAFDDATFD-GVDVISLSLGSSLPLST-YVDDIISIGSFHAVAK-GISVVCS 179
             SS+D+ AA D A  D G DVI+LSLG      +  + + I     +A+AK G+ VV +
Sbjct: 83  SGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVLVVAA 138

Query: 180 AGNSGPYPQTVIN---TAPWVITVAASTID 206
           AGN GP   T I     +P VI V A   D
Sbjct: 139 AGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241

>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1

 Score = 77.2 bits (191), Expect = 9e-16
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 14/141 (9%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           +P D  GHGTH +   AG           + G  +G AP A L   K+    G  S +D+
Sbjct: 39  TPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVGVKVLDDSGSGSESDI 91

Query: 130 LAAFD----DATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP 185
           +A  D    +     + V++LSLG+  P  +Y +D +          GI VV +AGNSGP
Sbjct: 92  IAGIDWVVENNEKYNIRVVNLSLGAP-PDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGP 150

Query: 186 YPQTVIN--TAPWVITVAAST 204
            P T+ +   +P VITV A  
Sbjct: 151 GPGTITSPGNSPKVITVGAVD 171

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            +A FS+ G         KPDI APG NIL+S     +L   D               SG
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGPG-GDLGGYD-------------SHSG 218

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TSM+ P ++G  ALL + +P+ +P  +++ +VTTA+
Sbjct: 219 TSMAAPLVAGAAALLLSANPSLTPETLRALLVTTAT 254

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6

 Score = 71.4 bits (175), Expect = 9e-14
 Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 22/106 (20%)

Query: 354 SPEVAFFSSRG---------PSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNY 404
             E A+FSS G         P S      KPD+AAPGV++ ++    +   Q   +    
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQYTRL---- 216

Query: 405 IPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450
                    SGTSM+ PH++G+ ALL A HP  SP  IK A+  TA
Sbjct: 217 ---------SGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254

>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 24/139 (17%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
             +D  GHGTH +   A     D     +      G AP A L   K+    G  + +D+
Sbjct: 35  DYQDGNGHGTHVAGIIAA---LDNGVGVV------GVAPEADLYAVKVLNDDGSGTYSDI 85

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP---- 185
           +A  + A  +G+D+I++SLG     S  + + I      A A GI VV +AGNSG     
Sbjct: 86  IAGIEWAIENGMDIINMSLGGPSD-SPALREAIKK----AYAAGILVVAAAGNSGNGDSS 140

Query: 186 --YPQTVINTAPWVITVAA 202
             YP       P VI V A
Sbjct: 141 YDYP----AKYPSVIAVGA 155

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229

>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 73  DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP--GGCSSADLL 130
           D   HG H +   AG   ++ +  G+     +G AP A L   K+   P  G        
Sbjct: 80  DGSSHGMHVAGIVAGNGDEEDNGEGI-----KGVAPEAQLLAMKVFSNPEGGSTYDDAYA 134

Query: 131 AAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG------ 184
            A +DA   G DVI++SLGS+      +DD        A   G+ VV +AGN G      
Sbjct: 135 KAIEDAVKLGADVINMSLGST-AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGT 193

Query: 185 ------PYPQTVINTAPW----VITVAASTIDRAFPTAITM 215
                   P T    +P     V+TVA++      P    M
Sbjct: 194 SKPLATNNPDTGTVGSPATADDVLTVASANKKVPNPNGGQM 234

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 24/128 (18%)

Query: 360 FSSRGPS-SLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSM 418
           FSS GP+  L    LKPD+AAPG NIL+++ P++                 + V SGTSM
Sbjct: 191 FSSWGPTNELY---LKPDVAAPGGNILSTY-PLA--------------GGGYAVLSGTSM 232

Query: 419 SCPHISGIVALLK-AIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGG 477
           + P+++G  ALL  A H   SPA ++  + +TA              A    A     G 
Sbjct: 233 ATPYVAGAAALLIQARHGKLSPAELRDLLASTAKP----LPWSDGTSALPDLAPVAQQGA 288

Query: 478 GHVDPNKA 485
           G V+  KA
Sbjct: 289 GLVNAYKA 296

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 25/140 (17%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLL 130
           P D  GHGTH +   A     + +  G       G AP A L  Y++    G  +   ++
Sbjct: 64  PMDCQGHGTHVAGIIAA----NPNAYGFT-----GVAPEATLGAYRVFGCSGSTTEDTII 114

Query: 131 AAFDDATFDGVDVISLSLG-----SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNS-- 183
           AAF  A  DG DVI+ SLG     S  P +     I        V  G+ V  +AGN   
Sbjct: 115 AAFLRAYEDGADVITASLGGPSGWSEDPWAVVASRI--------VDAGVVVTIAAGNDGE 166

Query: 184 -GPYPQTVINTAPWVITVAA 202
            GP+  +   +   VI VA+
Sbjct: 167 RGPFYASSPASGRGVIAVAS 186

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 76  GHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDD 135
           GHGTH +   A G    +  +G+A          A L   K+    GG + ++L  A + 
Sbjct: 46  GHGTHVAGIIAAGDNNGSGGVGVAPN--------AKLESVKVLPGSGG-TDSELAGAIEW 96

Query: 136 ATF--DGVDVISLSLGS-SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVIN 192
           A    + + VI++SLG    P S++   I  +    A  KG   V +AGN G Y      
Sbjct: 97  AAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNNPV 156

Query: 193 TAP---W-VITVAASTID 206
           + P     +ITV A T +
Sbjct: 157 SDPASANNIITVGAVTEN 174

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 25/94 (26%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             A FSS GP        + ++AAPGV+IL+++                 P  ++   SG
Sbjct: 161 NRASFSSTGP--------EVELAAPGVDILSTY-----------------PNNDYAYLSG 195

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449
           TSM+ PH++G+ AL+ +  P  + A ++ A+  T
Sbjct: 196 TSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229

>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 24/97 (24%)

Query: 354 SPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVE 413
           +  +A FS+ G  ++       D+AAPGV+IL++                  P   +   
Sbjct: 186 NDALASFSNYGKKTV-------DLAAPGVDILSTS-----------------PGGGYGYM 221

Query: 414 SGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450
           SGTSM+ PH++G  ALL +++P  + A IK AI+++A
Sbjct: 222 SGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259

>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 23/92 (25%)

Query: 358 AFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTS 417
           +  S+ G           DIAAPG +IL+S +                    +   SGTS
Sbjct: 173 SPSSNGGA--------GVDIAAPGGDILSSPTTGGG---------------GYATLSGTS 209

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449
           M+ P ++G+ ALL + +P  +PA +K+A+++T
Sbjct: 210 MAAPIVAGVAALLLSANPDLTPAQVKAALLST 241

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241

>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 15/76 (19%)

Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGV+IL++W        T                SGTSM+ PH++G+ A L ++ P
Sbjct: 194 DIFAPGVDILSAWIGSDTATATL---------------SGTSMAAPHVAGLAAYLLSLGP 238

Query: 436 TWSPAAIKSAIVTTAS 451
             SPA +K+ ++  A+
Sbjct: 239 DLSPAEVKARLLNLAT 254

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255

>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 19/82 (23%)

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGT 416
           +A FSSRGPS+     +KPDI+APGVNI ++                  P   +   SGT
Sbjct: 187 LADFSSRGPSTYGR--IKPDISAPGVNIRSAV-----------------PGGGYGSSSGT 227

Query: 417 SMSCPHISGIVALLKAIHPTWS 438
           SM+ PH++G+ ALL + +P+  
Sbjct: 228 SMAAPHVAGVAALLWSANPSLI 249

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264

>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 22/107 (20%)

Query: 354 SPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVE 413
           S  VA FSSRGP+      +KPD+ APG  I    S  S               +  K  
Sbjct: 198 SDTVASFSSRGPTY--DGRIKPDLVAPGTGI---LSARSGGGGIGD---TSDSAYTSK-- 247

Query: 414 SGTSMSCPHISGIVALL----------KAIHPTWSPAAIKSAIVTTA 450
           SGTSM+ P ++G  ALL             +P  S A +K+ ++ +A
Sbjct: 248 SGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293

>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 19/96 (19%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             A FSS GP++     LKPD+ A G  I                        N    +G
Sbjct: 185 NKASFSSIGPTADGR--LKPDVMALGTGIYVINGD-----------------GNITYANG 225

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TS SCP I+G++A L   HP W+   IK AI+ +AS
Sbjct: 226 TSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261

>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLL 130
             DA GHGTH S T  GG  K         G+  G AP A L   K+    GG S + ++
Sbjct: 39  VFDAGGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDD-GGGSLSQII 88

Query: 131 AAFDDATFDGVDVISLSLGSS----LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPY 186
           A  + A     DV+S+SLG +     PL   V+ + +         G   V SAGN G  
Sbjct: 89  AGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSN-------QTGALFVVSAGNEGHG 141

Query: 187 PQTVINTAPWVITVAA 202
                 +A   ++V A
Sbjct: 142 TSGSPGSAYAALSVGA 157

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254

>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 24/146 (16%)

Query: 49  YVKGYEAEFGKLNSSDRVEFLSPRDAV---GHGTHTS-STAAGGMVKDASFLGLAQGLAR 104
           Y K    + G        E     D V   GHGT  +   AA G +K             
Sbjct: 25  YSKNLVPKGGYDGKEAG-ETGDINDIVDKLGHGTAVAGQIAANGNIK------------- 70

Query: 105 GGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLS-TYVDDIIS 163
           G AP   +  Y++  + G   S+ ++ A  DA  DGVDVI+LSLG  L +   Y DD + 
Sbjct: 71  GVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVE 130

Query: 164 IGSF-----HAVAKGISVVCSAGNSG 184
             ++     +A +KG  VV +AGN G
Sbjct: 131 YNAYKKAINYAKSKGSIVVAAAGNDG 156

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294

>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins

 Score = 61.5 bits (150), Expect = 7e-10
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 25/100 (25%)

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGT 416
           +A FS RGP       +KPDIAAPGVNIL               +P     +  +  SGT
Sbjct: 359 IAIFSGRGP--TRDGRIKPDIAAPGVNILT-------------ASPG--GGYTTR--SGT 399

Query: 417 SMSCPHISGIVALL--KAIH----PTWSPAAIKSAIVTTA 450
           S++   ++G  ALL    I     P      IK+ ++  A
Sbjct: 400 SVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455

>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 29/145 (20%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAW----LAIYKICWAPGGCSS 126
             D  GHGTH +   A     +            G A +A     + + K+  A G  S 
Sbjct: 64  AMDDNGHGTHVAGIIAA--ATNNGT---------GVAGVAPKAKIMPV-KVLDANGSGSL 111

Query: 127 ADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG-- 184
           AD+      A   G  VI+LSLG  L  ST + + I+    +A  KG+ VV +AGN G  
Sbjct: 112 ADIANGIRYAADKGAKVINLSLGGGLG-STALQEAIN----YAWNKGVVVVAAAGNEGVS 166

Query: 185 --PYPQTVINTAPWVITVAASTIDR 207
              YP       P  I VAA+  D 
Sbjct: 167 SVSYP----AAYPGAIAVAATDQDD 187

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260

>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 26/93 (27%)

Query: 358 AFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTS 417
           A FS+ G           D++APG  IL++                  P  ++   SGTS
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGILSTT-----------------PDGDYAYMSGTS 224

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450
           M+ PH++G+ ALL +  P  S + ++ A+  TA
Sbjct: 225 MATPHVAGVAALLYSQGP-LSASEVRDALKKTA 256

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260

>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 40/144 (27%)

Query: 355 PEVAFFSSRGPS-SLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVE 413
            +++ FSS GP+  L    LKPDI APG NI   +S V++                +   
Sbjct: 232 GQMSGFSSWGPTPDLD---LKPDITAPGGNI---YSTVNDNT--------------YGYM 271

Query: 414 SGTSMSCPHISGIVAL----LKAIHPTWSPA----AIKSAIVTTA--SLKDEYAQSIVAE 463
           SGTSM+ PH++G  AL    LK  +P  S       +K+ ++ TA   L  E  ++    
Sbjct: 272 SGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYY-- 329

Query: 464 GAPHKQADPFDYGGGHVDPNKAMD 487
            +P +Q      G G +D  KA+ 
Sbjct: 330 -SPRRQ------GAGLIDVAKAIA 346

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346

>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 358 AFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTS 417
           A +S+ GP+         D++APG +  +  +     +     T      + F    GTS
Sbjct: 204 ASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFL--QGTS 253

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449
           M+ PH++G+ AL+K+++P+ +PA I+S + +T
Sbjct: 254 MAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285

>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 22/143 (15%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLL 130
           P D  GHGTH +             +G       G A    +   K   A G  +++D +
Sbjct: 59  PMDDNGHGTHVAGIIGA--------VGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAI 110

Query: 131 AAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP----- 185
            A D A   G  +I+ S G   P     D I       A+  GI  V +AGN G      
Sbjct: 111 KAIDYAVDMGAKIINNSWGGGGPSQALRDAIA-----RAIDAGILFVAAAGNDGTNNDKT 165

Query: 186 --YPQTVINTAPWVITVAASTID 206
             YP +       +I+VAA+  +
Sbjct: 166 PTYPAS--YDLDNIISVAATDSN 186

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259

>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 38/149 (25%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
              D  GHGTH + T  G   G+ K A+ + +                 K+    G  + 
Sbjct: 58  PDSDCNGHGTHVAGTVGGKTYGVAKKANLVAV-----------------KVLDCNGSGTL 100

Query: 127 ADLLAAFDDATFDGVD-----VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAG 181
           + ++A  +    D        V ++SLG     ST +D  ++     AV  G+ VV +AG
Sbjct: 101 SGIIAGLEWVANDATKRGKPAVANMSLGG--GASTALDAAVA----AAVNAGVVVVVAAG 154

Query: 182 NSGPYPQTVINT----APWVITVAASTID 206
           NS    Q   N     AP  ITV A+  D
Sbjct: 155 NSN---QDACNYSPASAPEAITVGATDSD 180

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255

>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 31/145 (21%)

Query: 59  KLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQG-------LARGGAPLAW 111
            L S +  + +  RD  GHGTH +  AAG    +  F G+A         L +    L  
Sbjct: 62  ALASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLRE 121

Query: 112 LAIYKICWAPGGCSSADLLAAFD--DATFDGVD---VISLSLGSSL-------PLSTYVD 159
                           D++ A          ++   VI++SLG++         L  Y+D
Sbjct: 122 FYEDVPF-----YQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGTSLLERYID 176

Query: 160 DIISIGSFHAVAKGISVVCSAGNSG 184
            I  +       +GI+VV  AGN G
Sbjct: 177 AISRL-------RGIAVVVGAGNEG 194

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455

>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 42/156 (26%), Positives = 54/156 (34%), Gaps = 33/156 (21%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLA-WLAIYKICWAPGGCSSAD 128
            P D  GHGTHT  T  G             G   G AP A W+A         G + AD
Sbjct: 47  LPYDDNGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIAC--RALDRNGGNDAD 95

Query: 129 LLAAFD--DATFD----------GVDVISLSLGSSLPLSTYVDDIISIGSFHAV-AKGIS 175
            L       A  D            DVI+ S G     + ++   ++     A  A GI 
Sbjct: 96  YLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA-----AWRAAGIF 150

Query: 176 VVCSAGNSGPYPQTVINTA---PWVITVAASTIDRA 208
            V +AGN GP   T+       P    V A+  +  
Sbjct: 151 PVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDV 186

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264

>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS-AD 128
           +  D  GHGTH +   AG           +  L +G AP A L    I    G  SS  D
Sbjct: 49  TKDDVDGHGTHVAGIIAG-----KGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPD 103

Query: 129 LLAAFDDATFDGVDVISLSLGS----SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
           L   F      G  + S S GS       L     D  +          I  V SAGN G
Sbjct: 104 LNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYN-----NPDILFVFSAGNDG 158

Query: 185 PYPQTVINTAPW---VITVAAST 204
                 I +      V+TV AS 
Sbjct: 159 NDGSNTIGSPATAKNVLTVGASN 181

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293

>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 22/102 (21%)

Query: 354 SPEVAFFSSRGPSSL---SPSVL-KPDIAAP-GVNILASWSPVSNLEQTDHVTPNYIPQF 408
                  SS  P  +   +P V  KPD+ AP GVN                   +  P F
Sbjct: 166 PAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDG------------DGDGPPNF 213

Query: 409 NFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450
                 GTS + PH +G+ AL+ + +P  +PA I+ A+ +TA
Sbjct: 214 -----FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA 250

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275

>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 358 AFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTS 417
           A +S+ G           D+ APGV I  + +   +              F     SGTS
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPG---GGYGSF-----SGTS 210

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449
            + P  +G+ AL+ + +P  +PA ++  + +T
Sbjct: 211 FASPVAAGVAALILSANPNLTPAEVEDILTST 242

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 36/121 (29%), Positives = 48/121 (39%), Gaps = 29/121 (23%)

Query: 365 PSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHIS 424
           PSS S      D+AAPG NI  S SP  +   T                SGTS + P +S
Sbjct: 190 PSSFSLPGPWVDLAAPGENI-VSLSPGGDGLATT---------------SGTSFAAPFVS 233

Query: 425 GIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNK 484
           G  AL+++  P  + A ++  I  T            A+       D +  G G VDP  
Sbjct: 234 GTAALVRSRFPDLTAAQVRRRIEAT------------ADHPARGGRDDY-VGYGVVDPVA 280

Query: 485 A 485
           A
Sbjct: 281 A 281

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 36/157 (22%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
             +D  GHGTH + T  G  V      G   G+ARG    A +A+       GG     +
Sbjct: 41  DVQDGHGHGTHCAGTIFGRDVP-----GPRYGVARG----AEIALIGKVLGDGGGGDGGI 91

Query: 130 LAAFDDATFDGVDVISLSLGSSLP----------------LSTY------VDDIISIGSF 167
           LA    A  +G DVIS+SLG+  P                L  Y       D ++++ + 
Sbjct: 92  LAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAA 151

Query: 168 HAV-AKGISVVCSAGNSGPYPQTVINTAPWVITVAAS 203
            A  A+G  +V +AGN    P  +      V   AA 
Sbjct: 152 QAALARGTLIVAAAGNESQRPAGIPP----VGNPAAC 184

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297

>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 34/137 (24%), Positives = 46/137 (33%), Gaps = 22/137 (16%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGG-APLAWLAIYKICWAPG-GCSSA 127
           S  D   HGTH +   A              G    G AP A L   +   + G   S A
Sbjct: 41  SNGDGDSHGTHVAGVIAAA----------RDGGGMHGVAPDATLYSARASASAGSTFSDA 90

Query: 128 DLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIG----------SFHAVAKGISVV 177
           D+ AA+D     GV +I+ S G +  + T                      A   G   V
Sbjct: 91  DIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFV 150

Query: 178 CSAGNSGPYPQTVINTA 194
            +AGN G    ++   A
Sbjct: 151 FAAGNDGQANPSLAAAA 167

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267

>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLL 130
             D  GHGT  +  AA       + LG+A     G AP A L   +I  + G    +D+ 
Sbjct: 36  TSDIDGHGTACAGVAAA---VGNNGLGVA-----GVAPGAKLMPVRIADSLGYAYWSDIA 87

Query: 131 AAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV 190
            A   A  +G DVIS S G S    +    I +  ++    KG  V+ +AGNSG    + 
Sbjct: 88  QAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSG 147

Query: 191 INTAPWVITVAAST 204
               P VI VAA+ 
Sbjct: 148 YAANPSVIAVAATD 161

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242

>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 17/55 (30%)

Query: 375 PDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVAL 429
            DIAAPGV+I+++                      ++  SGTSM+ PH++G+ AL
Sbjct: 213 VDIAAPGVDIVSAAPGGG-----------------YRSMSGTSMATPHVAGVAAL 250

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297

>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 48.0 bits (113), Expect = 1e-05
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 17/104 (16%)

Query: 354 SPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVE 413
           S  VA FS+ G  +        DIAAPGVNIL+  +  +                 +   
Sbjct: 315 SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDGAD----------YVTL 358

Query: 414 SGTSMSCPHISGIVALLKAIHPT-WSPAAIKSAIVTTASLKDEY 456
           SGTSM+ PH+SG+ AL+ + +P   +PA +++ IVTTA L    
Sbjct: 359 SGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLS 402

Length = 508

>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 43/146 (29%), Positives = 58/146 (39%), Gaps = 35/146 (23%)

Query: 77  HGTHTSSTAAG-------GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           HGT   ST AG       G   +AS+               +LA  +   +       + 
Sbjct: 49  HGTAVLSTMAGYTPGVMVGTAPNASY---------------YLARTEDVASETPVEEDNW 93

Query: 130 LAAFDDATFDGVDVISLSLGSSL-----PLSTYVD-----DIISIGSFHAVAKGISVVCS 179
           +AA + A   GVD+IS SLG +         TY D       IS  +  A +KG+ VV S
Sbjct: 94  VAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNS 153

Query: 180 AGNSGPYPQTVINT---APWVITVAA 202
           AGN G      I     A  V++V A
Sbjct: 154 AGNEGSTQWKGIGAPADAENVLSVGA 179

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261

>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 25/99 (25%)

Query: 367 SLSP----SVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPH 422
           SLSP    S     +AAPG NI ++                  P+ +++  +GTSM+ PH
Sbjct: 520 SLSPNSFYSAKYCQLAAPGTNIYST-----------------FPKNSYRKLNGTSMAAPH 562

Query: 423 ISGIVALLKAIHPTWSPAAI----KSAIVTTASLKDEYA 457
           ++ I +L+ +I+P+ S   +    K +IV   SLK++  
Sbjct: 563 VAAIASLILSINPSLSYEEVIRILKESIVQLPSLKNKVK 601

Length = 639

>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 21/164 (12%)

Query: 73  DAVGHGTHTSSTAAG-GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLA 131
           D   HGT  +S AAG G ++   +    + L RG AP A +A  K  W      +    A
Sbjct: 54  DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113

Query: 132 AFDDATFDG---------VDVISLSLG-SSLPLSTY---VDDIISIGSFHAVAKGISVVC 178
            FD               VDVIS S G S+   + Y   +D    +        G+ +V 
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVS 173

Query: 179 SAGNSGPYPQTVINTAP----WVITVAASTIDRAFPTAITMGNN 218
           +AGN GP   T+  TAP      I+V A+T +  +      G  
Sbjct: 174 AAGNGGPGYGTI--TAPGAASLAISVGAAT-NFDYRPFYLFGYL 214

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311

>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 20/76 (26%)

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVN-ILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            A FS+ G           DIAAPGV  IL++  P  + +             N++  SG
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTV-PKLDGDGGG----------NYEYLSG 238

Query: 416 TSMSCPHISGIVALLK 431
           TSM+ PH+SG+ AL+ 
Sbjct: 239 TSMAAPHVSGVAALVL 254

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273

>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 41/156 (26%)

Query: 309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVK-----------FSFTKTVIGQQISPEV 357
           V+ S G P  + DF +   LL Y       IV             +    VIG      V
Sbjct: 95  VNLSLGGPGDR-DFPLLKELLEYAYKAGGIIVAAAPNNNDIGTPPASFPNVIG------V 147

Query: 358 AFFSSRGPSSLSPSVLKPD--IAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
              ++  P S            +A GV+I+A                   P   +   SG
Sbjct: 148 KSDTADDPKSF----WYIYVEFSADGVDIIAPA-----------------PHGRYLTVSG 186

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
            S + PH++G+VALL +  P      +K  +   A 
Sbjct: 187 NSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222

>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 21/94 (22%)

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGP++     L   I+APG  I    + V          PN+  Q   ++ +GTSMS 
Sbjct: 333 SSRGPTA--DGALGVSISAPGGAI----ASV----------PNWTLQ-GSQLMNGTSMSS 375

Query: 421 PHISGIVAL----LKAIHPTWSPAAIKSAIVTTA 450
           P+  G +AL    LKA    ++P +++ A+  TA
Sbjct: 376 PNACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412

>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 348 VIGQQISPEVAFFSSRGPSSLS-PS---VLKPDIAAPGVNILASWSPVSNLEQTDHVTPN 403
           V G      +A FSSRG ++   P     +KPDI   G  +  S   +            
Sbjct: 157 VGGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS--KLKG---------- 204

Query: 404 YIPQFNFKVESGTSMSCPHISGIVALLKAIHPT----WSPAAIKSAIVTTAS 451
                  +  SGTS++ P ++G VALL +  P      +PA++K A++ +A+
Sbjct: 205 -----GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESAT 251

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255

>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 377 IAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT 436
           +AAPG NI ++                Y         SGTS + PH+SG  ALL    P 
Sbjct: 208 LAAPGENIYSTDP---------DGGNGYG------RVSGTSFAAPHVSGAAALLAQKFPW 252

Query: 437 WSPAAIKSAIVTTA 450
            +   ++  ++TTA
Sbjct: 253 LTADQVRQTLLTTA 266

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267

>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (101), Expect = 3e-04
 Identities = 46/170 (27%), Positives = 64/170 (37%), Gaps = 15/170 (8%)

Query: 64  DRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG 123
           D        D  GHGTH + T A   V   +  G+A G+A G   L    +       G 
Sbjct: 172 DGDPEPPFLDDNGHGTHVAGTIAA--VIFDNGAGVA-GVAPGAKLLLVKVLGS---GGGS 225

Query: 124 CSSADLLAAFDDATFDG--VDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAG 181
              +D+    + A   G   DVI+LSLG SL  S       ++ +  A A G+ +V +AG
Sbjct: 226 GELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAA-ANAGGVVIVAAAG 284

Query: 182 NSGPYPQTVINTAPW------VITVAASTIDRAFPTAITMGNNQTVVGQA 225
           N G          P       VI V A  +     +    G+   V   A
Sbjct: 285 NDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAA 334

Length = 508

>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 38/148 (25%)

Query: 77  HGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKI----CWAPGGCSSADLLAA 132
           HGTH + T A                  G A +AW A  +I         G + +D++  
Sbjct: 73  HGTHVAGTIAA-----------VTNNGVGVAGVAWGA--RILPVRVLGKCGGTLSDIVDG 119

Query: 133 FDDA---TFDGV-------DVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGN 182
              A      GV        VI+LSLG     S  + + I+       A+G+ VV +AGN
Sbjct: 120 MRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAIN----DVRARGVLVVVAAGN 175

Query: 183 SGPYPQTVINTAPW----VITVAASTID 206
            G    +    AP     VI V A+ + 
Sbjct: 176 EG---SSASVDAPANCRGVIAVGATDLR 200

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 73  DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLA- 131
           D  GHGT  +   AG   +   F G+A   AR        A ++      G      LA 
Sbjct: 49  DCDGHGTLVAGIIAGRPGEGDGFSGVAPD-ARILPIRQTSAAFEPDEGTSGVGDLGTLAK 107

Query: 132 AFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFH-AVAKGISVVCSAGN-SGPYPQT 189
           A   A   G DVI++SL + LP  +  DD     +   A+ KG+ VV +AGN  G   +T
Sbjct: 108 AIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAGNTGGDGQKT 167

Query: 190 VINT---APWVITVAASTIDRA-FPTAITMGNNQTVV 222
            +      P V+ V +  IDR   P++ ++      +
Sbjct: 168 TVVYPAWYPGVLAVGS--IDRDGTPSSFSLPGPWVDL 202

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 23/108 (21%)

Query: 117 ICWAPGGCSSADLLAAFDDA---TFDGVDVISLSLG---SSLPLS--TYVDDIISIGSFH 168
             +   G  +   L AF  A     +   VIS+S G    SLP +    V ++ +     
Sbjct: 93  TLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFA----Q 148

Query: 169 AVAKGISVVCSAGNSGPYPQ---------TVINTA--PWVITVAASTI 205
           A A+GI+V+ ++G+SG             +V   A  P+V  V  +T+
Sbjct: 149 AAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTL 196

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361

>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 359 FFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFN-FKVESGTS 417
             +S GP S  P  +KPD+ A G N+    S  +       +T    P    F    GTS
Sbjct: 200 ATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTS 257

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
            + P  + + A L A  P  SP  I++ ++ +A 
Sbjct: 258 FAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291

>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 17/75 (22%)

Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APG  I ++                  P   ++ +SGTSM+ P +SG+ AL+ + +P
Sbjct: 233 DVFAPGERIYST-----------------TPDNEYETDSGTSMAAPVVSGVAALIWSYYP 275

Query: 436 TWSPAAIKSAIVTTA 450
             +   +K  I+ + 
Sbjct: 276 NLTAKEVKQIILESG 290

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291

>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
           +V  +SSRGPS       KPD+AA G     +W+P   L+    +  N      F +  G
Sbjct: 220 DVVSWSSRGPSIAG--DPKPDLAAIGA---FAWAPGRVLDSGGALDGN----EAFDLFGG 270

Query: 416 TSMSCPHISGIVALL------KAIHPTWSPAAIKSAIVTTA 450
           TSM+ P  +G  AL+      K     + P  +++ +++TA
Sbjct: 271 TSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311

>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 17/77 (22%)

Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D AAPGV++  +                      ++  SGTS + P ++  +ALL    P
Sbjct: 168 DFAAPGVDVWVAAPGGG-----------------YRYVSGTSFAAPFVTAALALLLQASP 210

Query: 436 TWSPAAIKSAIVTTASL 452
                A      T   L
Sbjct: 211 LAPDDARARLAATAKDL 227

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239

>gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 32/122 (26%)

Query: 72  RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLA 131
            D  GHGT  S+     +   A F+G+  G                          + + 
Sbjct: 58  CDENGHGTGESA-NLFAIAPGAQFIGVKLGGPDL---------------------VNSVG 95

Query: 132 AFDDATFDGVDVISLSLGSSL---------PLSTYVDDIISIGSFHAVAKGISVVCSAGN 182
           AF  A     D+IS S G  L          L   +  + +     AVA+GI VV SAGN
Sbjct: 96  AFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQ-DAVARGIVVVFSAGN 154

Query: 183 SG 184
            G
Sbjct: 155 GG 156

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298

>gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 387 SWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAI 446
           S    S     D   PN      + V SGTS + P ++G+ AL+   +P  SP   +S +
Sbjct: 223 SQLDRSCAAFPDGTPPND----GWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278

Query: 447 VTTAS 451
             TA 
Sbjct: 279 NKTAR 283

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	639
cd07478	455	Peptidases_S8_CspA-like Peptidase S8 family domain	100.0
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	100.0
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	100.0
PTZ00262	639	subtilisin-like protease; Provisional	100.0
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	100.0
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	100.0
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	100.0
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	100.0
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	100.0
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	100.0
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	100.0
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	100.0
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	100.0
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	100.0
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	100.0
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	100.0
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	100.0
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	100.0
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	100.0
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	100.0
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	100.0
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	100.0
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	100.0
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	100.0
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	100.0
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	100.0
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	100.0
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	100.0
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	100.0
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	100.0
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	100.0
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	100.0
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	100.0
KOG1153	501	consensus Subtilisin-related protease/Vacuolar pro	100.0
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	100.0
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	100.0
cd07488	247	Peptidases_S8_2 Peptidase S8 family domain, unchar	100.0
KOG1114	1304	consensus Tripeptidyl peptidase II [Posttranslatio	100.0
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	99.97
KOG4266	1033	consensus Subtilisin kexin isozyme-1/site 1 protea	99.97
COG1404	508	AprE Subtilisin-like serine proteases [Posttransla	99.89
cd04056	361	Peptidases_S53 Peptidase domain in the S53 family.	99.74
KOG3526	629	consensus Subtilisin-like proprotein convertase [P	99.56
cd02133	143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.28
cd02120	126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.22
cd04816	122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	98.82
cd02122	138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	98.81
cd02129	120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	98.79
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	98.75
cd02127	118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	98.74
cd02130	122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	98.74
PF02225	101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	98.72
cd04818	118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	98.66
cd02125	127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	98.64
cd02126	126	PA_EDEM3_like PA_EDEM3_like: protease associated d	98.64
cd02124	129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	98.63
cd02132	139	PA_GO-like PA_GO-like: Protease-associated domain	98.62
cd00538	126	PA PA: Protease-associated (PA) domain. The PA dom	98.58
cd04813	117	PA_1 PA_1: Protease-associated (PA) domain subgrou	98.58
cd04817	139	PA_VapT_like PA_VapT_like: Protease-associated dom	98.51
cd02123	153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	98.46
cd04819	127	PA_2 PA_2: Protease-associated (PA) domain subgrou	98.26
COG4934	1174	Predicted protease [Posttranslational modification	97.66
cd04815	134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	97.4
KOG3525	431	consensus Subtilisin-like proprotein convertase [P	97.31
cd02128	183	PA_TfR PA_TfR: Protease-associated domain containi	96.99
KOG2442	541	consensus Uncharacterized conserved protein, conta	96.96
cd04822	151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	96.53
PF14874	102	PapD-like: Flagellar-associated PapD-like	96.45
cd04814	142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	96.28
cd04820	137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	96.18
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	95.88
cd02131	153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	95.4
KOG3920	193	consensus Uncharacterized conserved protein, conta	95.3
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.23
cd02121	220	PA_GCPII_like PA_GCPII_like: Protease-associated d	95.09
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	93.1
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	90.04
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	87.77
cd04821	157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	84.39
COG1470	513	Predicted membrane protein [Function unknown]	83.57

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins

Probab=100.00  E-value=6.6e-50  Score=434.13  Aligned_cols=405  Identities=22%  Similarity=0.219  Sum_probs=256.0

Q ss_pred             CccccCCCCCCCCC-CCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCch
Q 006600            1 MDTGIWPESESFKD-ENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGT   79 (639)
Q Consensus         1 IDtGId~~Hp~F~~-~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGT   79 (639)
                      |||||||.||+|++ ++.+++...|++....+.      ......++..|.++.......  ...+.+....+|..||||
T Consensus        11 IDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~------~~~~~~~~~~~~~~~i~~~~~--~~~p~~~~~~~D~~GHGT   82 (455)
T cd07478          11 IDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP------PPGGYYGGGEYTEEIINAALA--SDNPYDIVPSRDENGHGT   82 (455)
T ss_pred             EECCCCCCCHHHccCCCCchhHHhhhCcCCCCC------CCccccCceEEeHHHHHHHHh--cCCccccCcCCCCCCchH
Confidence            79999999999986 567899999999877543      222333344443321111000  012334455678999999


Q ss_pred             hhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCC----------CCHHHHHHHHHHHHhC-----CCcEE
Q 006600           80 HTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG----------CSSADLLAAFDDATFD-----GVDVI  144 (639)
Q Consensus        80 HVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~----------~~~~~i~~ai~~a~~~-----g~dVI  144 (639)
                      ||||||||+..+        ...+.||||+|+|+++|++...+.          +...+++.||+|+++.     .+.||
T Consensus        83 hvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VI  154 (455)
T cd07478          83 HVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVI  154 (455)
T ss_pred             HHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            999999999643        245699999999999999987543          6789999999999874     46799


Q ss_pred             EEccCCCCCCCCCccchHHHHHHHhHhC-CcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006600          145 SLSLGSSLPLSTYVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG  223 (639)
Q Consensus       145 n~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g  223 (639)
                      |||||... +++...++++++++.+.++ |++||+||||+|....+......        .....-...+.++.+.....
T Consensus       155 nlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~~~~~  225 (455)
T cd07478         155 NISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGEKGFN  225 (455)
T ss_pred             EEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCCcceE
Confidence            99999986 7777888999999988766 99999999999975444432100        00000001111222111000


Q ss_pred             EEeecCcCCCCceeeeEEccccccCCCCc------------cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhh
Q 006600          224 QAFYNGKEDLNKFYPIVIGKDIATFDADE------------GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTV  291 (639)
Q Consensus       224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~------------~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~  291 (639)
                      ..+..... ..-...++.+.-........            .....|-. ...+....|.-.+.-+          . .-
T Consensus       226 ~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~-y~~~~~~~g~~~i~i~----------~-~~  292 (455)
T cd07478         226 LEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVY-YYLPEPYTGDQLIFIR----------F-KN  292 (455)
T ss_pred             EEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEE-EcCCCCCCCCeEEEEE----------c-cC
Confidence            00000000 00011111111000000000            00000000 0111222222222222          1 23


Q ss_pred             hcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEec----eeeeccc-CCCeeecccCCCCC
Q 006600          292 LDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFT----KTVIGQQ-ISPEVAFFSSRGPS  366 (639)
Q Consensus       292 ~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~----~~~~~~~-~~~~~a~fSS~Gp~  366 (639)
                      ...|.+-+.++........+..++|...+...+..+    +.+....++++...    .++.... ..+.++.||||||+
T Consensus       293 ~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f----~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~  368 (455)
T cd07478         293 IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRF----LEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPT  368 (455)
T ss_pred             CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEe----ecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcC
Confidence            445888888887666555566777766655444332    23333444433322    2333332 34569999999999


Q ss_pred             CCCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC------CCCCHH
Q 006600          367 SLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH------PTWSPA  440 (639)
Q Consensus       367 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~ls~~  440 (639)
                      .  ++++||||+|||++|+++.+                 .+.|..++|||||||||||++|||+|.+      |.|+++
T Consensus       369 ~--~~~~kpdi~APG~~i~s~~~-----------------~~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~  429 (455)
T cd07478         369 R--DGRIKPDIAAPGVNILTASP-----------------GGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGE  429 (455)
T ss_pred             C--CCCcCceEEecCCCEEEeec-----------------CCcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHH
Confidence            8  89999999999999999998                 5789999999999999999999999965      567999


Q ss_pred             HHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCC
Q 006600          441 AIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGG  478 (639)
Q Consensus       441 ~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G  478 (639)
                      +||++|++||+++            ....+++.+||||
T Consensus       430 ~ik~~L~~tA~~~------------~~~~~pn~~~GyG  455 (455)
T cd07478         430 KIKTYLIRGARRR------------PGDEYPNPEWGYG  455 (455)
T ss_pred             HHHHHHHHhCccC------------CCCCCCCCCCCCC
Confidence            9999999999975            2346778899998

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=100.00  E-value=1.2e-48  Score=407.56  Aligned_cols=271  Identities=56%  Similarity=0.887  Sum_probs=231.1

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|++....+++..|++.|+.+..++...|++|+++.++|.+++......   ....+..++.|..|||||
T Consensus        37 iDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~---~~~~~~~~~~d~~gHGT~  113 (307)
T cd04852          37 LDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGF---NSDGEYRSPRDYDGHGTH  113 (307)
T ss_pred             EeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEEEEEEcccchhhccCc---ccccCCCCCccCCCCchh
Confidence            79999999999999988999999999999998887788999999999999875543221   123456678899999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||||+...+....|...+.+.||||+|+|+.+|++...+.+..+++++||++|++++++|||||||....  ....+
T Consensus       114 VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~--~~~~~  191 (307)
T cd04852         114 TASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGSP--DPYED  191 (307)
T ss_pred             hhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CcccC
Confidence            9999999987766666666677899999999999999987678889999999999999999999999998741  34567


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      .+..++.++.++|++||+||||+|+...+.++..||+++|||++                                    
T Consensus       192 ~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~------------------------------------  235 (307)
T cd04852         192 PIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST------------------------------------  235 (307)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc------------------------------------
Confidence            78888899999999999999999988888888889999999521                                    


Q ss_pred             EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV  320 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i  320 (639)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (307)
T cd04852         236 --------------------------------------------------------------------------------  235 (307)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV  400 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~  400 (639)
                                                                          +||||+|||.+|++++......... . 
T Consensus       236 ----------------------------------------------------~~~di~apG~~i~~~~~~~~~~~~~-~-  261 (307)
T cd04852         236 ----------------------------------------------------LKPDIAAPGVDILAAWTPEGADPGD-A-  261 (307)
T ss_pred             ----------------------------------------------------CccceeeccCceeecccCccccccC-C-
Confidence                                                                4779999999999998743111100 1 


Q ss_pred             CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                          . ...|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus       262 ----~-~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~  307 (307)
T cd04852         262 ----R-GEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY  307 (307)
T ss_pred             ----C-CCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence                1 578999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=100.00  E-value=2.1e-47  Score=395.10  Aligned_cols=239  Identities=31%  Similarity=0.245  Sum_probs=167.3

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccc-cCccceeecCCCeEEEEEeecCCCCCCHHHHHH-------HHHHH--HhC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGL-AQGLARGGAPLAWLAIYKICWAPGGCSSADLLA-------AFDDA--TFD  139 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~-------ai~~a--~~~  139 (639)
                      .+.|.+||||||||||||......+..++ ....+.||||+|+|+.+|++...+......+..       +++|.  .++
T Consensus        51 ~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  130 (311)
T cd07497          51 IMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGP  130 (311)
T ss_pred             CCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCC
Confidence            46789999999999999986433222211 123579999999999999997533333333333       34443  468


Q ss_pred             CCcEEEEccCCCCCCCC---CccchHHHHHHHh-HhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEE
Q 006600          140 GVDVISLSLGSSLPLST---YVDDIISIGSFHA-VAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAI  213 (639)
Q Consensus       140 g~dVIn~SlG~~~~~~~---~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~  213 (639)
                      +++|||||||.......   ...+..+..++.+ .++|+++|+||||+|+...++  +..++++|+|||++.....+.  
T Consensus       131 ~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~--  208 (311)
T cd07497         131 RVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF--  208 (311)
T ss_pred             CceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch--
Confidence            99999999998641100   1122334444433 389999999999999865444  346799999999754310000  


Q ss_pred             EeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhc
Q 006600          214 TMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLD  293 (639)
Q Consensus       214 ~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~  293 (639)
                                             +...+                                                    
T Consensus       209 -----------------------~~~~~----------------------------------------------------  213 (311)
T cd07497         209 -----------------------YLFGY----------------------------------------------------  213 (311)
T ss_pred             -----------------------hhhcc----------------------------------------------------
Confidence                                   00000                                                    


Q ss_pred             CCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCc
Q 006600          294 SGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVL  373 (639)
Q Consensus       294 ~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~  373 (639)
                                                                              .....+.++.||||||+.  ++++
T Consensus       214 --------------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~  235 (311)
T cd07497         214 --------------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDP  235 (311)
T ss_pred             --------------------------------------------------------ccCCCCCccccccCCCCc--ccCC
Confidence                                                                    001235789999999998  8999


Q ss_pred             CCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHH
Q 006600          374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP------TWSPAAIKSAIV  447 (639)
Q Consensus       374 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~ls~~~vk~~L~  447 (639)
                      ||||+|||++|+++.+........       .....|..++|||||||||||++|||+|++|      .+++++||++|+
T Consensus       236 kPdv~ApG~~i~s~~~~~~~~~~~-------~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~  308 (311)
T cd07497         236 KPDLAAIGAFAWAPGRVLDSGGAL-------DGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILM  308 (311)
T ss_pred             CCceeccCcceEeecccCCCCccc-------CCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHH
Confidence            999999999999987643210000       0035799999999999999999999999876      689999999999


Q ss_pred             hcC
Q 006600          448 TTA  450 (639)
Q Consensus       448 ~TA  450 (639)
                      +||
T Consensus       309 ~tA  311 (311)
T cd07497         309 STA  311 (311)
T ss_pred             hcC
Confidence            997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PTZ00262 subtilisin-like protease; Provisional

Probab=100.00  E-value=1.1e-47  Score=416.21  Aligned_cols=229  Identities=22%  Similarity=0.207  Sum_probs=178.6

Q ss_pred             CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006600           69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSL  148 (639)
Q Consensus        69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~Sl  148 (639)
                      .+|.|..||||||||||||...+        ..++.||||+|+|+++|+++..+.+..+++++||+||++.|++||||||
T Consensus       372 ~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl  443 (639)
T PTZ00262        372 GGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF  443 (639)
T ss_pred             CCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence            35789999999999999998542        2346899999999999999876778899999999999999999999999


Q ss_pred             CCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--------------cC----CCCcEEEEEeeccCCccc
Q 006600          149 GSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--------------IN----TAPWVITVAASTIDRAFP  210 (639)
Q Consensus       149 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------------~~----~ap~vitVgA~~~~~~~~  210 (639)
                      |...     ....+..++.+|.++|++||+||||+|+.....              +.    ..++||+|||+..+.   
T Consensus       444 G~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~---  515 (639)
T PTZ00262        444 SFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK---  515 (639)
T ss_pred             ccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence            9763     345678899999999999999999998643211              11    135566666543210   


Q ss_pred             eEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHh
Q 006600          211 TAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAART  290 (639)
Q Consensus       211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~  290 (639)
                                                                                                      
T Consensus       516 --------------------------------------------------------------------------------  515 (639)
T PTZ00262        516 --------------------------------------------------------------------------------  515 (639)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCC
Q 006600          291 VLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSP  370 (639)
Q Consensus       291 ~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~  370 (639)
                                                                                   ...-.++.||++|.     
T Consensus       516 -------------------------------------------------------------~~~~s~s~~Snyg~-----  529 (639)
T PTZ00262        516 -------------------------------------------------------------NNQYSLSPNSFYSA-----  529 (639)
T ss_pred             -------------------------------------------------------------CCcccccccccCCC-----
Confidence                                                                         00012345566652     


Q ss_pred             CCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC
Q 006600          371 SVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA  450 (639)
Q Consensus       371 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA  450 (639)
                        .++||+|||++|+|+++                 ++.|..++|||||||||||+||||++++|+|++.||+++|++||
T Consensus       530 --~~VDIaAPG~dI~St~p-----------------~g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA  590 (639)
T PTZ00262        530 --KYCQLAAPGTNIYSTFP-----------------KNSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESI  590 (639)
T ss_pred             --CcceEEeCCCCeeeccC-----------------CCceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence              13499999999999987                 57899999999999999999999999999999999999999999


Q ss_pred             ccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCCCeee
Q 006600          451 SLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVY  492 (639)
Q Consensus       451 ~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~  492 (639)
                      .++...             .....| +|+||+++|++.++-+
T Consensus       591 ~~l~~~-------------~n~~~w-gG~LDa~kAV~~Ai~~  618 (639)
T PTZ00262        591 VQLPSL-------------KNKVKW-GGYLDIHHAVNLAIAS  618 (639)
T ss_pred             ccCCCC-------------CCcccc-CcEEcHHHHHHHHHhc
Confidence            865210             111223 4899999999865544

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=100.00  E-value=1.2e-45  Score=391.97  Aligned_cols=298  Identities=29%  Similarity=0.343  Sum_probs=224.3

Q ss_pred             CccccCCCCCCCCCCCCCCCCC-----cccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCC
Q 006600            1 MDTGIWPESESFKDENMGEIPP-----RWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAV   75 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~-----~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   75 (639)
                      ||||||++||+|.+....+...     .++..+..+.   ..+++.+++.+++|.+....            .....|..
T Consensus        18 iDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~   82 (346)
T cd07475          18 IDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGY---GKYYNEKVPFAYNYADNNDD------------ILDEDDGS   82 (346)
T ss_pred             EeCCCCCCChhHccCCCcccccchhhhhhhhcccCCC---CcccccCCCeeEcCCCCCCc------------cCCCCCCC
Confidence            7999999999998764432110     1222222222   23478899999999876321            12245788


Q ss_pred             CCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecC--CCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 006600           76 GHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA--PGGCSSADLLAAFDDATFDGVDVISLSLGSSLP  153 (639)
Q Consensus        76 GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~--~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~  153 (639)
                      +|||||||||+|...+..     .+..+.||||+|+|+.+|++..  ........+++|++++++.|++|||||||... 
T Consensus        83 ~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-  156 (346)
T cd07475          83 SHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA-  156 (346)
T ss_pred             CcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC-
Confidence            999999999999875322     1345799999999999999973  46778899999999999999999999999985 


Q ss_pred             CCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc----------------CCCCcEEEEEeeccCCccceEEEeCC
Q 006600          154 LSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI----------------NTAPWVITVAASTIDRAFPTAITMGN  217 (639)
Q Consensus       154 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap~vitVgA~~~~~~~~~~~~~~~  217 (639)
                      ........+..++.++.++|++||+||||+|.......                ...+++|+||++...           
T Consensus       157 ~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~-----------  225 (346)
T cd07475         157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK-----------  225 (346)
T ss_pred             CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-----------
Confidence            22244567788888999999999999999985432211                123455555543200           


Q ss_pred             ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006600          218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV  297 (639)
Q Consensus       218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~  297 (639)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (346)
T cd07475         226 --------------------------------------------------------------------------------  225 (346)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCce
Q 006600          298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDI  377 (639)
Q Consensus       298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI  377 (639)
                                                                         ......+.++.||+|||+.  ++++||||
T Consensus       226 ---------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi  252 (346)
T cd07475         226 ---------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDI  252 (346)
T ss_pred             ---------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeE
Confidence                                                               0012235788999999998  89999999


Q ss_pred             EcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhc
Q 006600          378 AAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI----HPTWSPAA----IKSAIVTT  449 (639)
Q Consensus       378 ~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~----vk~~L~~T  449 (639)
                      +|||.+|+++..                 .+.|..++|||||||+|||++|||+|+    +|.|++.+    ||.+|++|
T Consensus       253 ~apG~~i~s~~~-----------------~~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~t  315 (346)
T cd07475         253 TAPGGNIYSTVN-----------------DNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNT  315 (346)
T ss_pred             EeCCCCeEEecC-----------------CCceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Confidence            999999999876                 478899999999999999999999997    78999876    78899999


Q ss_pred             CccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          450 ASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       450 A~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                      |.+..       +.......+.+.++|+|+||+.+||+
T Consensus       316 a~~~~-------~~~~~~~~~~~~~~G~G~vn~~~Av~  346 (346)
T cd07475         316 ATPPL-------DSEDTKTYYSPRRQGAGLIDVAKAIA  346 (346)
T ss_pred             CCccc-------ccCCCCccCCccccCcchhcHHHhhC
Confidence            98421       11113556778899999999999985

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=100.00  E-value=1.1e-45  Score=374.00  Aligned_cols=203  Identities=30%  Similarity=0.390  Sum_probs=171.0

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS  150 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~  150 (639)
                      +.|..||||||||||+|+..           .+.||||+|+|+.+|++.+.+....++++++|+||++++++|||||||.
T Consensus        41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~  109 (255)
T cd07479          41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG  109 (255)
T ss_pred             CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence            45778999999999998742           3489999999999999987666778889999999999999999999998


Q ss_pred             CCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006600          151 SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN  228 (639)
Q Consensus       151 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (639)
                      ..    +.+.++.+++.++.++|++||+||||+|+...+.  +...+++|+|||+..+                      
T Consensus       110 ~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~----------------------  163 (255)
T cd07479         110 PD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD----------------------  163 (255)
T ss_pred             CC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC----------------------
Confidence            63    4445677777888899999999999999765443  3455788999874321                      


Q ss_pred             CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (255)
T cd07479         164 --------------------------------------------------------------------------------  163 (255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCC----CCCCcCCceEcCCCcE
Q 006600          309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSL----SPSVLKPDIAAPGVNI  384 (639)
Q Consensus       309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I  384 (639)
                                                                    +.++.|||+|++..    ..+++||||+|||.+|
T Consensus       164 ----------------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i  197 (255)
T cd07479         164 ----------------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGV  197 (255)
T ss_pred             ----------------------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCe
Confidence                                                          46788999996421    2678899999999999


Q ss_pred             EeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCccC
Q 006600          385 LASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP----TWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       385 ~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~vk~~L~~TA~~~  453 (639)
                      +++..                 .+.|..++|||||||||||++|||+|++|    .++|.+||++|++||+++
T Consensus       198 ~~~~~-----------------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~  253 (255)
T cd07479         198 YGSKL-----------------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL  253 (255)
T ss_pred             ecccc-----------------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence            98765                 46789999999999999999999999998    799999999999999975

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=100.00  E-value=1.3e-45  Score=376.32  Aligned_cols=228  Identities=25%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS  150 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~  150 (639)
                      ..|..||||||||||+                  ||||+|+|+.+|+..     ..+++++||+|++++|++|||||||.
T Consensus        44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~  100 (275)
T cd05562          44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGY  100 (275)
T ss_pred             CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccc
Confidence            4578899999999993                  789999999998742     37889999999999999999999998


Q ss_pred             CCCCCCCccchHHHHHHHhHhC-CcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006600          151 SLPLSTYVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN  228 (639)
Q Consensus       151 ~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (639)
                      .. ...+.+..+..+++++.++ |++||+||||+|+... ..+...|++|+|||++...........             
T Consensus       101 ~~-~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~-------------  166 (275)
T cd05562         101 LN-EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDP-------------  166 (275)
T ss_pred             cC-CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccc-------------
Confidence            64 2212345688888888887 9999999999997533 335577999999997644210000000             


Q ss_pred             CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                                                                         +.                           
T Consensus       167 ---------------------------------------------------~~---------------------------  168 (275)
T cd05562         167 ---------------------------------------------------AP---------------------------  168 (275)
T ss_pred             ---------------------------------------------------cc---------------------------
Confidence                                                               00                           


Q ss_pred             CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc-EEec
Q 006600          309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN-ILAS  387 (639)
Q Consensus       309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~-I~sa  387 (639)
                                                                .......+.||++||+.  ++++||||+|||+. +.++
T Consensus       169 ------------------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~  204 (275)
T cd05562         169 ------------------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVD  204 (275)
T ss_pred             ------------------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCC
Confidence                                                      00012345678899988  88999999999753 4444


Q ss_pred             cCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCC
Q 006600          388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPH  467 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~  467 (639)
                      +.                 .+.|..++|||||||||||++|||+|++|+|++++||++|++||+++..            
T Consensus       205 ~~-----------------~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------  255 (275)
T cd05562         205 GD-----------------GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------  255 (275)
T ss_pred             Cc-----------------CCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------
Confidence            43                 5789999999999999999999999999999999999999999996531            


Q ss_pred             CCCCCCCCCCCCCCcCCcCC
Q 006600          468 KQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       468 ~~~~~~~~G~G~id~~~A~~  487 (639)
                       +..+..||||+||+.+|++
T Consensus       256 -~g~d~~~G~G~vda~~Av~  274 (275)
T cd05562         256 -PGYDNASGSGLVDADRAVA  274 (275)
T ss_pred             -CCCCCCcCcCcccHHHHhh
Confidence             2245589999999999986

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=100.00  E-value=5.8e-44  Score=370.91  Aligned_cols=284  Identities=38%  Similarity=0.472  Sum_probs=215.1

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+..                     .++++++.+++|.......................|..+||||
T Consensus         9 iDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~   67 (295)
T cd07474           9 IDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTH   67 (295)
T ss_pred             EECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHH
Confidence            7999999999997642                     1456666777776542211000000000011224568999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||+|...+        ...+.||||+|+|+.+|++...+.+...+++++|+|+++++++|||||||... .  ...+
T Consensus        68 vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~-~--~~~~  136 (295)
T cd07474          68 VAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV-N--GPDD  136 (295)
T ss_pred             HHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-C--CCCC
Confidence            99999998643        23568999999999999998657788999999999999999999999999874 2  2456


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceee
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYP  238 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p  238 (639)
                      .+..+++++.++|+++|+||||+|......  +...+++|+||++.....                              
T Consensus       137 ~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------------  186 (295)
T cd07474         137 PDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------------  186 (295)
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------------
Confidence            788889999999999999999999765544  446789999998541100                              


Q ss_pred             eEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEE
Q 006600          239 IVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYI  318 (639)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~  318 (639)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (295)
T cd07474         187 --------------------------------------------------------------------------------  186 (295)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecc-cCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006600          319 QVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF-SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT  397 (639)
Q Consensus       319 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f-SS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~  397 (639)
                                                       ........| |++|++.  ...+||||+|||++|++++...      
T Consensus       187 ---------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~------  225 (295)
T cd07474         187 ---------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS------  225 (295)
T ss_pred             ---------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC------
Confidence                                             001233344 4455555  8899999999999999998743      


Q ss_pred             CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCC
Q 006600          398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGG  477 (639)
Q Consensus       398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~  477 (639)
                               ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+         ...+++..+|+
T Consensus       226 ---------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~---------~~~~~~~~~G~  287 (295)
T cd07474         226 ---------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------GVVYPVSRQGA  287 (295)
T ss_pred             ---------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC---------CCcCChhccCc
Confidence                     368999999999999999999999999999999999999999999764322         22235668999


Q ss_pred             CCCCcCCc
Q 006600          478 GHVDPNKA  485 (639)
Q Consensus       478 G~id~~~A  485 (639)
                      |+||+.+|
T Consensus       288 G~l~~~~A  295 (295)
T cd07474         288 GRVDALRA  295 (295)
T ss_pred             ceeccccC
Confidence            99999886

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=100.00  E-value=1.7e-44  Score=372.57  Aligned_cols=264  Identities=25%  Similarity=0.287  Sum_probs=187.5

Q ss_pred             CccccCCCCCCCCCCCCCCC-CCcccccccCCCCcCCCCCCcceEEEEEcccchhhhc----cCCCC----CCCCcCCCC
Q 006600            1 MDTGIWPESESFKDENMGEI-PPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEF----GKLNS----SDRVEFLSP   71 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~-~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~----~~~~~----~~~~~~~~~   71 (639)
                      ||||||++||+|++...... ....+|....+.+|.     + -+++++|...+....    .+.+.    ....+...|
T Consensus         8 iDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~-----d-d~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (291)
T cd07483           8 LDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI-----D-DVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNGP   81 (291)
T ss_pred             EeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc-----c-cccCeeccCCcccccccccCccccccccccccccCCC
Confidence            79999999999987522110 001122222222221     0 145666654211100    00000    001223456


Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSS  151 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~  151 (639)
                      .|..||||||||||+|...++        ..+.||||+|+|+.+|++.. +.....++++||+||+++|++|||||||..
T Consensus        82 ~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~  152 (291)
T cd07483          82 ISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKVINMSFGKS  152 (291)
T ss_pred             CCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence            678999999999999986432        23689999999999999865 566778999999999999999999999976


Q ss_pred             CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc-----------CCCCcEEEEEeeccCCccceEEEeCCceE
Q 006600          152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI-----------NTAPWVITVAASTIDRAFPTAITMGNNQT  220 (639)
Q Consensus       152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-----------~~ap~vitVgA~~~~~~~~~~~~~~~~~~  220 (639)
                      . .  .....+..++.++.++|+++|+||||+|.......           ...+++|+|||+....             
T Consensus       153 ~-~--~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-------------  216 (291)
T cd07483         153 F-S--PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-------------  216 (291)
T ss_pred             C-C--CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-------------
Confidence            3 1  23345777888899999999999999995422111           1234566666532210             


Q ss_pred             EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006600          221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI  300 (639)
Q Consensus       221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i  300 (639)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (291)
T cd07483         217 --------------------------------------------------------------------------------  216 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcC
Q 006600          301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAP  380 (639)
Q Consensus       301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP  380 (639)
                                                                          ....++.||++|+.       +|||+||
T Consensus       217 ----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~AP  237 (291)
T cd07483         217 ----------------------------------------------------ENNLVANFSNYGKK-------NVDVFAP  237 (291)
T ss_pred             ----------------------------------------------------CcccccccCCCCCC-------ceEEEeC
Confidence                                                                01246789999974       3599999


Q ss_pred             CCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          381 GVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       381 G~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                      |..|+++.+                 .+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus       238 G~~i~s~~~-----------------~~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~  291 (291)
T cd07483         238 GERIYSTTP-----------------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV  291 (291)
T ss_pred             CCCeEeccC-----------------cCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence            999999876                 578999999999999999999999999999999999999999984

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=100.00  E-value=3.4e-44  Score=359.83  Aligned_cols=204  Identities=27%  Similarity=0.340  Sum_probs=170.6

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC---CCCCHHHHHHHHHHHHhCCCcEEEEc
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP---GGCSSADLLAAFDDATFDGVDVISLS  147 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~---~~~~~~~i~~ai~~a~~~g~dVIn~S  147 (639)
                      +.|..+|||||||||+|....          . .||||+|+|+.+|++...   ..+...++++||+||++.|++|||||
T Consensus        32 ~~~~~~HGT~vAgiia~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S  100 (239)
T cd05561          32 APAPSAHGTAVASLLAGAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNIS  100 (239)
T ss_pred             CCCCCCCHHHHHHHHhCCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeC
Confidence            456789999999999998531          1 699999999999999853   24678899999999999999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEe
Q 006600          148 LGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAF  226 (639)
Q Consensus       148 lG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~  226 (639)
                      ||...      ...+..++.++.++|++||+||||+|+.. ..++...+++|+|+++..+                    
T Consensus       101 ~g~~~------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~--------------------  154 (239)
T cd05561         101 LAGPP------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR--------------------  154 (239)
T ss_pred             CCCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------
Confidence            99652      34678888999999999999999999753 3455566888999864321                    


Q ss_pred             ecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC
Q 006600          227 YNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT  306 (639)
Q Consensus       227 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~  306 (639)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (239)
T cd05561         155 --------------------------------------------------------------------------------  154 (239)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEe
Q 006600          307 KDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILA  386 (639)
Q Consensus       307 ~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s  386 (639)
                                                                      +.++.||++|+..        ||+|||.+|++
T Consensus       155 ------------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~  178 (239)
T cd05561         155 ------------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWV  178 (239)
T ss_pred             ------------------------------------------------CCccccCCCCCcc--------eEEccccceec
Confidence                                                            3567899999977        99999999998


Q ss_pred             ccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCC
Q 006600          387 SWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAP  466 (639)
Q Consensus       387 a~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~  466 (639)
                      +.+                 .+.|..++|||||||||||++|||+|++| |+++|||++|++||+++..           
T Consensus       179 ~~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------  229 (239)
T cd05561         179 AAP-----------------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------  229 (239)
T ss_pred             ccC-----------------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------
Confidence            765                 57899999999999999999999999999 9999999999999997632           


Q ss_pred             CCCCCCCCCCCC
Q 006600          467 HKQADPFDYGGG  478 (639)
Q Consensus       467 ~~~~~~~~~G~G  478 (639)
                        +.....||||
T Consensus       230 --~~~d~~~G~G  239 (239)
T cd05561         230 --PGRDPVFGYG  239 (239)
T ss_pred             --CCcCCCcCCC
Confidence              2233478887

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=100.00  E-value=5.9e-44  Score=373.38  Aligned_cols=277  Identities=31%  Similarity=0.346  Sum_probs=215.4

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.-.                     .+.++.+.++|..+......     ......++.|..|||||
T Consensus        20 iDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~d~~gHGT~   73 (312)
T cd07489          20 VDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYDGTN-----PPVPDDDPMDCQGHGTH   73 (312)
T ss_pred             EECCCCCCChhhhcCCC---------------------CCceeccccccCCccccccc-----CCCCCCCCCCCCCcHHH
Confidence            79999999999976421                     11233334444433111000     01223466788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||+|...+         ..+.||||+|+|+.+|++...+....+.+++++++|++++++|||||||... .  +..+
T Consensus        74 vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~-~--~~~~  141 (312)
T cd07489          74 VAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS-G--WSED  141 (312)
T ss_pred             HHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC-C--CCCC
Confidence            99999998642         3468999999999999998667788889999999999999999999999874 2  4457


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCC---cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCcee
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQ---TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFY  237 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  237 (639)
                      .+..++.++.++|+++|+||||+|....   ..+...+++|+||+++                                 
T Consensus       142 ~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------------------  188 (312)
T cd07489         142 PWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------------------  188 (312)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------------
Confidence            7888888999999999999999986432   2234557788887521                                 


Q ss_pred             eeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccE
Q 006600          238 PIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPY  317 (639)
Q Consensus       238 pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~  317 (639)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (312)
T cd07489         189 --------------------------------------------------------------------------------  188 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006600          318 IQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT  397 (639)
Q Consensus       318 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~  397 (639)
                                                              +.||+|||+.  +...||||+|||++|+++++..      
T Consensus       189 ----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~------  220 (312)
T cd07489         189 ----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA------  220 (312)
T ss_pred             ----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC------
Confidence                                                    4689999998  7899999999999999988743      


Q ss_pred             CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCC
Q 006600          398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH-PTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYG  476 (639)
Q Consensus       398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G  476 (639)
                               .+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+..-.    ...+++..++|
T Consensus       221 ---------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~----~~~~~~~~~~G  287 (312)
T cd07489         221 ---------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA----LPDLAPVAQQG  287 (312)
T ss_pred             ---------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc----ccCCCCHhhcC
Confidence                     3569999999999999999999999999 999999999999999997643321111    11246778999


Q ss_pred             CCCCCcCCcCCCC
Q 006600          477 GGHVDPNKAMDPG  489 (639)
Q Consensus       477 ~G~id~~~A~~~~  489 (639)
                      +|+||+.+|++..
T Consensus       288 ~G~vn~~~a~~~~  300 (312)
T cd07489         288 AGLVNAYKALYAT  300 (312)
T ss_pred             cceeeHHHHhcCC
Confidence            9999999999953

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=100.00  E-value=1.8e-43  Score=360.45  Aligned_cols=240  Identities=33%  Similarity=0.373  Sum_probs=192.1

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.....                    ..+.++.+.++|.++..              ....|..|||||
T Consensus         7 iDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~--------------~~~~~~~~HGT~   52 (261)
T cd07493           7 IDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN--------------NTNYTDDDHGTA   52 (261)
T ss_pred             EccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC--------------CCCCCCCCchhh
Confidence            79999999999954311                    13557778888866511              013578899999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC--CCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC--
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP--GGCSSADLLAAFDDATFDGVDVISLSLGSSLPLST--  156 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~--~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~--  156 (639)
                      |||||+|...          +.+.||||+|+|+.+|+....  .......+++|++|+.+.|++|||||||.......  
T Consensus        53 vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~  122 (261)
T cd07493          53 VLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTY  122 (261)
T ss_pred             hheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc
Confidence            9999999852          246899999999999987542  23456678999999999999999999998751110  


Q ss_pred             --------CccchHHHHHHHhHhCCcEEEEeccCCCCCC---CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEE
Q 006600          157 --------YVDDIISIGSFHAVAKGISVVCSAGNSGPYP---QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQA  225 (639)
Q Consensus       157 --------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~  225 (639)
                              .....+.++++++.++|+++|+||||+|...   ...+...+++|+|||....                   
T Consensus       123 ~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~-------------------  183 (261)
T cd07493         123 SYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN-------------------  183 (261)
T ss_pred             ccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-------------------
Confidence                    0113567788889999999999999999762   3445567899999974321                   


Q ss_pred             eecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCC
Q 006600          226 FYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFP  305 (639)
Q Consensus       226 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~  305 (639)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (261)
T cd07493         184 --------------------------------------------------------------------------------  183 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEE
Q 006600          306 TKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNIL  385 (639)
Q Consensus       306 ~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~  385 (639)
                                                                       +.++.||++||+.  ++++||||+|||.+|+
T Consensus       184 -------------------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~  212 (261)
T cd07493         184 -------------------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIY  212 (261)
T ss_pred             -------------------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeE
Confidence                                                             3567899999998  8999999999999998


Q ss_pred             eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                      +...                 .+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus       213 ~~~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~  261 (261)
T cd07493         213 VING-----------------DGNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS  261 (261)
T ss_pred             EEcC-----------------CCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence            7543                 578999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=100.00  E-value=2.7e-43  Score=358.21  Aligned_cols=203  Identities=31%  Similarity=0.314  Sum_probs=172.1

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG-GCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ..|..+|||||||||+|+..          ..+.||||+|+|+.+|++...+ .+...++++||+||+++|++|||||||
T Consensus        46 ~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G  115 (267)
T cd07476          46 DGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGG  115 (267)
T ss_pred             CCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence            45678999999999998742          2358999999999999997643 344788999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                      ... ........+.++++++.++|++||+||||+|......+...|++|+|||+...                       
T Consensus       116 ~~~-~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------------------  171 (267)
T cd07476         116 RLT-QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-----------------------  171 (267)
T ss_pred             cCC-CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------
Confidence            764 22234566888889999999999999999998777777778999999975321                       


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (267)
T cd07476         172 --------------------------------------------------------------------------------  171 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS  389 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~  389 (639)
                                                                   +.++.||+||+..     .||||+|||.+|+++.+
T Consensus       172 ---------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~  201 (267)
T cd07476         172 ---------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAAL  201 (267)
T ss_pred             ---------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecC
Confidence                                                         2456899999865     38899999999999887


Q ss_pred             CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCccCC
Q 006600          390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT----WSPAAIKSAIVTTASLKD  454 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----ls~~~vk~~L~~TA~~~~  454 (639)
                                       ++.|..++|||||||||||++|||+|++|.    +++++||++|++||+++.
T Consensus       202 -----------------~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~  253 (267)
T cd07476         202 -----------------GGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCD  253 (267)
T ss_pred             -----------------CCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCC
Confidence                             578999999999999999999999999887    899999999999999764

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=100.00  E-value=2.2e-42  Score=352.90  Aligned_cols=202  Identities=35%  Similarity=0.380  Sum_probs=171.4

Q ss_pred             CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh----------
Q 006600           69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF----------  138 (639)
Q Consensus        69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~----------  138 (639)
                      ..|.|..+|||||||||+|....         +...||||+|+|+.+|++.. ..+...+++++++++++          
T Consensus        46 ~~~~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~  115 (264)
T cd07481          46 PLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDR-NGGNDADYLRCAQWMLAPTDSAGNPAD  115 (264)
T ss_pred             CCCCCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecC-CCCcHHHHHHHHHHHHhcccccccccc
Confidence            35678899999999999987532         22389999999999999987 44788899999999975          


Q ss_pred             --CCCcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCc---ccCCCCcEEEEEeeccCCccceEE
Q 006600          139 --DGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT---VINTAPWVITVAASTIDRAFPTAI  213 (639)
Q Consensus       139 --~g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgA~~~~~~~~~~~  213 (639)
                        .|++|||||||...    .....+..++..+.++|++||+||||+|.....   .+...+++|+|||+..+       
T Consensus       116 ~~~~~~Iin~S~G~~~----~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~-------  184 (264)
T cd07481         116 PDLAPDVINNSWGGPS----GDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN-------  184 (264)
T ss_pred             cccCCeEEEeCCCcCC----CCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-------
Confidence              78999999999874    234556677788889999999999999865433   34566888998864321       


Q ss_pred             EeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhc
Q 006600          214 TMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLD  293 (639)
Q Consensus       214 ~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~  293 (639)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (264)
T cd07481         185 --------------------------------------------------------------------------------  184 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCc
Q 006600          294 SGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVL  373 (639)
Q Consensus       294 ~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~  373 (639)
                                                                                   +.++.||++||..  .+++
T Consensus       185 -------------------------------------------------------------~~~~~~S~~g~~~--~~~~  201 (264)
T cd07481         185 -------------------------------------------------------------DVLADFSSRGPST--YGRI  201 (264)
T ss_pred             -------------------------------------------------------------CCCccccCCCCCC--CCCc
Confidence                                                                         4677899999998  7999


Q ss_pred             CCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCc
Q 006600          374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT--WSPAAIKSAIVTTAS  451 (639)
Q Consensus       374 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--ls~~~vk~~L~~TA~  451 (639)
                      ||||+|||.+|+++++                 ++.|..++|||||||+|||++|||+|++|+  ++++|||++|++||+
T Consensus       202 ~~dv~ApG~~i~s~~~-----------------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~  264 (264)
T cd07481         202 KPDISAPGVNIRSAVP-----------------GGGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR  264 (264)
T ss_pred             CceEEECCCCeEEecC-----------------CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence            9999999999999987                 578999999999999999999999999999  999999999999985

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=100.00  E-value=1.4e-42  Score=359.30  Aligned_cols=237  Identities=25%  Similarity=0.217  Sum_probs=169.8

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC----CCCHHHHHHHHHHHHhCC---CcE
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG----GCSSADLLAAFDDATFDG---VDV  143 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~dV  143 (639)
                      +.|..||||||||||++....        .....|+||+++|+.+|++...+    .....++++||+|+++.+   ++|
T Consensus        34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V  105 (291)
T cd04847          34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV  105 (291)
T ss_pred             cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence            568899999999999976432        12457999999999999998753    456788999999999853   499


Q ss_pred             EEEccCCCCCCCCCccchHHHHHHH-hHhCCcEEEEeccCCCCCCCcc------------cCCCCcEEEEEeeccCCccc
Q 006600          144 ISLSLGSSLPLSTYVDDIISIGSFH-AVAKGISVVCSAGNSGPYPQTV------------INTAPWVITVAASTIDRAFP  210 (639)
Q Consensus       144 In~SlG~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~ap~vitVgA~~~~~~~~  210 (639)
                      ||||||............+..++++ +.++|++||+||||+|......            +..++++|+|||++......
T Consensus       106 iN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~  185 (291)
T cd04847         106 FNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDIT  185 (291)
T ss_pred             EEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCC
Confidence            9999999852111111245556654 5689999999999999765432            33467999999876543100


Q ss_pred             eEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHh
Q 006600          211 TAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAART  290 (639)
Q Consensus       211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~  290 (639)
                      ..-..                                                                +          
T Consensus       186 ~~s~~----------------------------------------------------------------~----------  191 (291)
T cd04847         186 DRARY----------------------------------------------------------------S----------  191 (291)
T ss_pred             Ccccc----------------------------------------------------------------c----------
Confidence            00000                                                                0          


Q ss_pred             hhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCC
Q 006600          291 VLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSP  370 (639)
Q Consensus       291 ~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~  370 (639)
                                                                                  .......+.||+|||..  +
T Consensus       192 ------------------------------------------------------------~~~~~~~~~fs~~Gp~~--~  209 (291)
T cd04847         192 ------------------------------------------------------------AVGPAPAGATTSSGPGS--P  209 (291)
T ss_pred             ------------------------------------------------------------ccccccCCCccccCCCC--C
Confidence                                                                        00001233499999998  9


Q ss_pred             CCcCCceEcCCCcEEeccCCCCCCccCC-CCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006600          371 SVLKPDIAAPGVNILASWSPVSNLEQTD-HVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT  449 (639)
Q Consensus       371 ~~~KPDI~APG~~I~sa~~~~~~~~~~~-~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T  449 (639)
                      +.+||||+|||++|.+............ ...........|..++|||||||||||++|||+|++|++++++||++|++|
T Consensus       210 ~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~s  289 (291)
T cd04847         210 GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHS  289 (291)
T ss_pred             CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence            9999999999999987654211000000 000000115789999999999999999999999999999999999999999


Q ss_pred             Cc
Q 006600          450 AS  451 (639)
Q Consensus       450 A~  451 (639)
                      |+
T Consensus       290 A~  291 (291)
T cd04847         290 AE  291 (291)
T ss_pred             cC
Confidence            85

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=100.00  E-value=1.6e-41  Score=346.95  Aligned_cols=220  Identities=36%  Similarity=0.496  Sum_probs=182.4

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC----CCcEEE
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD----GVDVIS  145 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~dVIn  145 (639)
                      ...|..||||||||||+|...+.       ...+.||||+|+|+.+|++...+.....++++||+|+++.    +++|||
T Consensus        39 ~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin  111 (264)
T cd07487          39 TPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVN  111 (264)
T ss_pred             CCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEE
Confidence            45677899999999999986431       2346999999999999999876777889999999999998    999999


Q ss_pred             EccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC--cccCCCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006600          146 LSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ--TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG  223 (639)
Q Consensus       146 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g  223 (639)
                      ||||... ......+.+..+++++.++|++||+||||++....  ..+...+++|+|||+..+..               
T Consensus       112 ~S~g~~~-~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------  175 (264)
T cd07487         112 LSLGAPP-DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------  175 (264)
T ss_pred             eccCCCC-CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------
Confidence            9999885 22356678899999999999999999999997765  44456789999997543310               


Q ss_pred             EEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEec
Q 006600          224 QAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAK  303 (639)
Q Consensus       224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~  303 (639)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (264)
T cd07487         176 --------------------------------------------------------------------------------  175 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc
Q 006600          304 FPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN  383 (639)
Q Consensus       304 ~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~  383 (639)
                                                                       ....++.||++||+.  ++++||||+|||++
T Consensus       176 -------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~  204 (264)
T cd07487         176 -------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGEN  204 (264)
T ss_pred             -------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccc
Confidence                                                             002577899999998  89999999999999


Q ss_pred             EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       384 I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                      |+++.+......  .      ...+.|..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus       205 i~~~~~~~~~~~--~------~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~  264 (264)
T cd07487         205 IVSCRSPGGNPG--A------GVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT  264 (264)
T ss_pred             eEeccccccccC--C------CCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence            999865431110  0      11578999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=100.00  E-value=3.1e-41  Score=355.44  Aligned_cols=220  Identities=29%  Similarity=0.294  Sum_probs=167.5

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG--CSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .|+.||||||||||||+..+        ...+.||||+|+|+.+|++.....  +....+++||++|++.|++|||||||
T Consensus       182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG  253 (412)
T cd04857         182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG  253 (412)
T ss_pred             CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence            47789999999999998532        235689999999999999865322  23467999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHH-hHhCCcEEEEeccCCCCCCCcccC---CCCcEEEEEeeccCCccceEEEeCCceEEEeEE
Q 006600          150 SSLPLSTYVDDIISIGSFH-AVAKGISVVCSAGNSGPYPQTVIN---TAPWVITVAASTIDRAFPTAITMGNNQTVVGQA  225 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~  225 (639)
                      ... .. .....+..++.+ +.++|+++|+||||+|+...++..   ..+++|+|||+.........             
T Consensus       254 ~~~-~~-~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------  318 (412)
T cd04857         254 EAT-HW-PNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------  318 (412)
T ss_pred             cCC-CC-ccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence            874 21 111233444444 447899999999999987766543   35899999986432110000             


Q ss_pred             eecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCC
Q 006600          226 FYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFP  305 (639)
Q Consensus       226 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~  305 (639)
                                 |-+.                                                                 
T Consensus       319 -----------y~~~-----------------------------------------------------------------  322 (412)
T cd04857         319 -----------YSLR-----------------------------------------------------------------  322 (412)
T ss_pred             -----------cccc-----------------------------------------------------------------
Confidence                       0000                                                                 


Q ss_pred             CCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEE
Q 006600          306 TKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNIL  385 (639)
Q Consensus       306 ~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~  385 (639)
                                                                   ....+.++.||||||+.  ++.+||||+|||+.|.
T Consensus       323 ---------------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~  355 (412)
T cd04857         323 ---------------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIA  355 (412)
T ss_pred             ---------------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEE
Confidence                                                         01125788999999999  9999999999999998


Q ss_pred             eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCcc
Q 006600          386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASL  452 (639)
Q Consensus       386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~  452 (639)
                      |+-...               ...|..|+|||||||||||++|||++    .+|+|+|.+||++|++||++
T Consensus       356 s~p~~~---------------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~  411 (412)
T cd04857         356 SVPNWT---------------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK  411 (412)
T ss_pred             EcccCC---------------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence            752211               46789999999999999999999975    57899999999999999985

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=100.00  E-value=6.4e-41  Score=340.46  Aligned_cols=216  Identities=34%  Similarity=0.385  Sum_probs=166.7

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .+.|..+|||||||||+|+..         +....||||+|+|+.+|++...+ +...+++++|+|+++.+++|||||||
T Consensus        38 ~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g  107 (254)
T cd07490          38 EVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLG  107 (254)
T ss_pred             CCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence            455788999999999999864         23457999999999999998743 78899999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHh-CCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006600          150 SSLPLSTYVDDIISIGSFHAVA-KGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN  228 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (639)
                      ...    ...+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.......               
T Consensus       108 ~~~----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s---------------  168 (254)
T cd07490         108 GTY----YSEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS---------------  168 (254)
T ss_pred             cCC----CCCcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc---------------
Confidence            874    225566666666654 699999999999987666677789999999865432100000               


Q ss_pred             CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                       .                                                                              
T Consensus       169 -~------------------------------------------------------------------------------  169 (254)
T cd07490         169 -S------------------------------------------------------------------------------  169 (254)
T ss_pred             -C------------------------------------------------------------------------------
Confidence             0                                                                              


Q ss_pred             CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006600          309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW  388 (639)
Q Consensus       309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~  388 (639)
                                                                  .........+.+|.. .....||||+|||.+|+++.
T Consensus       170 --------------------------------------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~  204 (254)
T cd07490         170 --------------------------------------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSAR  204 (254)
T ss_pred             --------------------------------------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccc
Confidence                                                        000111223333433 15568999999999999865


Q ss_pred             CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                      ....            . .+.|..++|||||||+|||++|||+|++|+|++.+||.+|++||+
T Consensus       205 ~~~~------------~-~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~  254 (254)
T cd07490         205 QGAN------------G-DGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY  254 (254)
T ss_pred             cCCC------------C-CCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence            3211            0 578999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=100.00  E-value=1.6e-40  Score=340.92  Aligned_cols=209  Identities=30%  Similarity=0.291  Sum_probs=171.5

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ...|..||||||||||+|...+.....|++  .+.|+||+|+|+.+|++........+.++++|++|++.|++|||||||
T Consensus        56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g  133 (273)
T cd07485          56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWG  133 (273)
T ss_pred             CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCC
Confidence            345678999999999999865433222222  356799999999999998766788899999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhC-------CcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEE
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAK-------GISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVV  222 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~  222 (639)
                      ....  ......+..+++++.++       |++||+||||+|......+...+++|+|++++.+                
T Consensus       134 ~~~~--~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~----------------  195 (273)
T cd07485         134 GTGG--GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN----------------  195 (273)
T ss_pred             CCCc--cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC----------------
Confidence            8741  23456677888888887       9999999999998766666777899999974321                


Q ss_pred             eEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEe
Q 006600          223 GQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFA  302 (639)
Q Consensus       223 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~  302 (639)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (273)
T cd07485         196 --------------------------------------------------------------------------------  195 (273)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCC
Q 006600          303 KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGV  382 (639)
Q Consensus       303 ~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~  382 (639)
                                                                          +.++.||++|+..        ||+|||.
T Consensus       196 ----------------------------------------------------~~~~~~S~~g~~~--------~i~apG~  215 (273)
T cd07485         196 ----------------------------------------------------DNKASFSNYGRWV--------DIAAPGV  215 (273)
T ss_pred             ----------------------------------------------------CCcCccccCCCce--------EEEeCCC
Confidence                                                                3566899999987        9999999


Q ss_pred             -cEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 006600          383 -NILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT-WSPAAIKSAIVTT  449 (639)
Q Consensus       383 -~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-ls~~~vk~~L~~T  449 (639)
                       .|+++++.....          . .+.|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus       216 ~~i~~~~~~~~~~----------~-~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T  273 (273)
T cd07485         216 GTILSTVPKLDGD----------G-GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES  273 (273)
T ss_pred             CccccccccccCC----------C-CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence             898887643110          0 468999999999999999999999999999 9999999999986

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=100.00  E-value=1.4e-40  Score=343.49  Aligned_cols=209  Identities=26%  Similarity=0.321  Sum_probs=167.3

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH----------hC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT----------FD  139 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~----------~~  139 (639)
                      ...|..+|||||||||+|...+        ...+.||||+|+|+.+|++...+. ...++++|++|++          ++
T Consensus        66 ~~~~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~~~-~~~~i~~a~~~a~~~~~~~~~~~~~  136 (285)
T cd07496          66 GVSPSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKCGG-TLSDIVDGMRWAAGLPVPGVPVNPN  136 (285)
T ss_pred             CCCCCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCCCC-cHHHHHHHHHHHhccCcCCCcccCC
Confidence            4556889999999999998642        234589999999999999987444 8889999999998          46


Q ss_pred             CCcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCc
Q 006600          140 GVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNN  218 (639)
Q Consensus       140 g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~  218 (639)
                      +++|||||||...    .....+..++.++.++|++||+||||+|... ...+...+++|+|||+..+            
T Consensus       137 ~~~Iin~S~G~~~----~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------  200 (285)
T cd07496         137 PAKVINLSLGGDG----ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------  200 (285)
T ss_pred             CCeEEEeCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence            7899999999874    2256788889999999999999999999765 4555667899999974322            


Q ss_pred             eEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceE
Q 006600          219 QTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVG  298 (639)
Q Consensus       219 ~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g  298 (639)
                                                                                                      
T Consensus       201 --------------------------------------------------------------------------------  200 (285)
T cd07496         201 --------------------------------------------------------------------------------  200 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceE
Q 006600          299 LIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIA  378 (639)
Q Consensus       299 ~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~  378 (639)
                                                                              +.++.||++|+..        ||+
T Consensus       201 --------------------------------------------------------~~~~~~S~~g~~v--------di~  216 (285)
T cd07496         201 --------------------------------------------------------GQRASYSNYGPAV--------DVS  216 (285)
T ss_pred             --------------------------------------------------------CCcccccCCCCCC--------CEE
Confidence                                                                    3667899999987        999


Q ss_pred             cCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006600          379 APGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT  449 (639)
Q Consensus       379 APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T  449 (639)
                      |||++|.++............. .... ...|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus       217 apG~~i~~~~~~~~~~~~~~~~-~~~~-~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t  285 (285)
T cd07496         217 APGGDCASDVNGDGYPDSNTGT-TSPG-GSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST  285 (285)
T ss_pred             eCCCCccccCCCCccccccccc-cCCC-CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence            9999999887643221000000 0001 4678999999999999999999999999999999999999976

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=100.00  E-value=1.6e-40  Score=334.98  Aligned_cols=207  Identities=29%  Similarity=0.298  Sum_probs=170.5

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .+.|..+|||||||||+|+..+        ...+.||||+|+|+.+|++...+.+...++.++++++++.+++|||||||
T Consensus        35 ~~~~~~~HGT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g  106 (242)
T cd07498          35 PTSDIDGHGTACAGVAAAVGNN--------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG  106 (242)
T ss_pred             CCCCCCCCHHHHHHHHHhccCC--------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence            3467889999999999998532        23468999999999999998756678899999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHh-CCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006600          150 SSLPLSTYVDDIISIGSFHAVA-KGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN  228 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (639)
                      ... ........+..++.++.+ +|+++|+||||+|......+...+++|+|||++..                      
T Consensus       107 ~~~-~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------  163 (242)
T cd07498         107 GSD-STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN----------------------  163 (242)
T ss_pred             CCC-CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------
Confidence            875 222345667778888888 99999999999998766667778999999975422                      


Q ss_pred             CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (242)
T cd07498         164 --------------------------------------------------------------------------------  163 (242)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006600          309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW  388 (639)
Q Consensus       309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~  388 (639)
                                                                    +.++.||++|+..        |++|||.++.+..
T Consensus       164 ----------------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~  189 (242)
T cd07498         164 ----------------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTG  189 (242)
T ss_pred             ----------------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCC
Confidence                                                          3567899999988        9999999998875


Q ss_pred             CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006600          389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT  449 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T  449 (639)
                      ........  .     . .+.|..++|||||||+|||++|||+|++|+|+++|||++|+.|
T Consensus       190 ~~~~~~~~--~-----~-~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t  242 (242)
T cd07498         190 TGRGSAGD--Y-----P-GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST  242 (242)
T ss_pred             cccccccc--C-----C-CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence            43211000  0     1 5778999999999999999999999999999999999999976

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=100.00  E-value=8.8e-40  Score=333.21  Aligned_cols=196  Identities=34%  Similarity=0.395  Sum_probs=171.8

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS  150 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~  150 (639)
                      +.|..||||||||||++....        ...+.|+||+|+|+.+|++...+.+...+++++|+++++.|++|||||||.
T Consensus        64 ~~d~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~  135 (260)
T cd07484          64 AMDDNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGG  135 (260)
T ss_pred             CCCCCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCC
Confidence            567889999999999987532        234689999999999999987677888999999999999999999999998


Q ss_pred             CCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCc
Q 006600          151 SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGK  230 (639)
Q Consensus       151 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~  230 (639)
                      ..     ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+                        
T Consensus       136 ~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------  186 (260)
T cd07484         136 GL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------------  186 (260)
T ss_pred             CC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------------
Confidence            73     4456778888889999999999999998877888888999999974322                        


Q ss_pred             CCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCC
Q 006600          231 EDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVH  310 (639)
Q Consensus       231 ~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~  310 (639)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (260)
T cd07484         187 --------------------------------------------------------------------------------  186 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCC
Q 006600          311 FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSP  390 (639)
Q Consensus       311 ~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~  390 (639)
                                                                  +..+.||++|+..        |++|||..|+++.+ 
T Consensus       187 --------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~-  213 (260)
T cd07484         187 --------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTP-  213 (260)
T ss_pred             --------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecC-
Confidence                                                        3566889999877        99999999998876 


Q ss_pred             CCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006600          391 VSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~  453 (639)
                                      .+.|..++|||||||+|||++|||+|++| |++++||++|++||+++
T Consensus       214 ----------------~~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~  259 (260)
T cd07484         214 ----------------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI  259 (260)
T ss_pred             ----------------CCCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence                            46899999999999999999999999999 99999999999999864

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=100.00  E-value=1.1e-39  Score=332.30  Aligned_cols=198  Identities=32%  Similarity=0.372  Sum_probs=167.5

Q ss_pred             CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006600           69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSL  148 (639)
Q Consensus        69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~Sl  148 (639)
                      .++.|..||||||||||+|...+        ...+.||||+|+|+.+|++...+.+...+++++|+++++.+++|||+||
T Consensus        57 ~~~~d~~~HGT~va~ii~~~~~~--------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~  128 (259)
T cd07473          57 NDPMDDNGHGTHVAGIIGAVGNN--------GIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSW  128 (259)
T ss_pred             CCCCCCCCcHHHHHHHHHCcCCC--------CCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCC
Confidence            45678899999999999998643        2345899999999999999876678899999999999999999999999


Q ss_pred             CCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC---CcccC--CCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006600          149 GSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP---QTVIN--TAPWVITVAASTIDRAFPTAITMGNNQTVVG  223 (639)
Q Consensus       149 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g  223 (639)
                      |...     ....+..++.++.++|++||+||||+|...   ..++.  ..+++|+||+...+                 
T Consensus       129 G~~~-----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-----------------  186 (259)
T cd07473         129 GGGG-----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-----------------  186 (259)
T ss_pred             CCCC-----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------
Confidence            9883     356788888999999999999999999652   22332  34788888864321                 


Q ss_pred             EEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEec
Q 006600          224 QAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAK  303 (639)
Q Consensus       224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~  303 (639)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (259)
T cd07473         187 --------------------------------------------------------------------------------  186 (259)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc
Q 006600          304 FPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN  383 (639)
Q Consensus       304 ~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~  383 (639)
                                                                         +.++.||++||.       +||+.|||.+
T Consensus       187 ---------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~  208 (259)
T cd07473         187 ---------------------------------------------------DALASFSNYGKK-------TVDLAAPGVD  208 (259)
T ss_pred             ---------------------------------------------------CCcCcccCCCCC-------CcEEEeccCC
Confidence                                                               355678999985       3599999999


Q ss_pred             EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       384 I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                      +++..+                 .+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus       209 ~~~~~~-----------------~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~  259 (259)
T cd07473         209 ILSTSP-----------------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD  259 (259)
T ss_pred             eEeccC-----------------CCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence            999665                 578999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=100.00  E-value=1.2e-39  Score=331.08  Aligned_cols=191  Identities=34%  Similarity=0.459  Sum_probs=165.7

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC-----CCcEEE
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD-----GVDVIS  145 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~dVIn  145 (639)
                      ..|..+|||||||||++..              .||||+|+|+.+|++...+....+.++++++++++.     +++|||
T Consensus        59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin  124 (255)
T cd04077          59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN  124 (255)
T ss_pred             CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence            4578899999999999863              699999999999999886678889999999999987     489999


Q ss_pred             EccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeE
Q 006600          146 LSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQ  224 (639)
Q Consensus       146 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~  224 (639)
                      ||||...      ...+..+++++.++|+++|+||||+|... ...+...+++|+||++..+                  
T Consensus       125 ~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------  180 (255)
T cd04077         125 MSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------  180 (255)
T ss_pred             eCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC------------------
Confidence            9999862      45677888899999999999999999765 3445567899999974322                  


Q ss_pred             EeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecC
Q 006600          225 AFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKF  304 (639)
Q Consensus       225 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~  304 (639)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (255)
T cd04077         181 --------------------------------------------------------------------------------  180 (255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcE
Q 006600          305 PTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNI  384 (639)
Q Consensus       305 ~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I  384 (639)
                                                                        +.++.||++||..        ||+|||.+|
T Consensus       181 --------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i  202 (255)
T cd04077         181 --------------------------------------------------DARASFSNYGSCV--------DIFAPGVDI  202 (255)
T ss_pred             --------------------------------------------------CCccCcccCCCCC--------cEEeCCCCe
Confidence                                                              3467899999988        999999999


Q ss_pred             EeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcc
Q 006600          385 LASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASL  452 (639)
Q Consensus       385 ~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~  452 (639)
                      .++....               .+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus       203 ~~~~~~~---------------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~  255 (255)
T cd04077         203 LSAWIGS---------------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK  255 (255)
T ss_pred             EecccCC---------------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence            9887642               4789999999999999999999999999999999999999999973

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=100.00  E-value=1.9e-39  Score=324.48  Aligned_cols=193  Identities=34%  Similarity=0.440  Sum_probs=166.9

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .+.|..+|||||||||++....         ..+.|+||+|+|+.+|++...+.....+++++++++++.|++|||||||
T Consensus        35 ~~~~~~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g  105 (229)
T cd07477          35 DYQDGNGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG  105 (229)
T ss_pred             CCCCCCCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence            4557889999999999998532         2468999999999999998766777889999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEee
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFY  227 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~  227 (639)
                      ...     ....+..++.++.++|+++|+||||++......  +...+++|+||+++.+                     
T Consensus       106 ~~~-----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------  159 (229)
T cd07477         106 GPS-----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN---------------------  159 (229)
T ss_pred             cCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC---------------------
Confidence            873     345567788889999999999999999776554  6677899999975432                     


Q ss_pred             cCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCC
Q 006600          228 NGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTK  307 (639)
Q Consensus       228 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~  307 (639)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (229)
T cd07477         160 --------------------------------------------------------------------------------  159 (229)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEec
Q 006600          308 DVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILAS  387 (639)
Q Consensus       308 ~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa  387 (639)
                                                                     +.++.||++|+..        |+.|||..|+++
T Consensus       160 -----------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~  184 (229)
T cd07477         160 -----------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILST  184 (229)
T ss_pred             -----------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence                                                           3556889999876        999999999998


Q ss_pred             cCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006600          388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT  449 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T  449 (639)
                      ++                 .+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus       185 ~~-----------------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t  229 (229)
T cd07477         185 YP-----------------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT  229 (229)
T ss_pred             cC-----------------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence            87                 4778999999999999999999999999999999999999976

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=100.00  E-value=1.6e-40  Score=342.69  Aligned_cols=273  Identities=36%  Similarity=0.448  Sum_probs=205.7

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|...++                     ...++.+.+.|.+..            .......|..+||||
T Consensus         5 iDtGid~~h~~~~~~~~---------------------~~~~~~~~~~~~~~~------------~~~~~~~~~~~HGT~   51 (282)
T PF00082_consen    5 IDTGIDPNHPDFSSGNF---------------------IWSKVPGGYNFVDGN------------PNPSPSDDDNGHGTH   51 (282)
T ss_dssp             EESBBTTTSTTTTCTTE---------------------EEEEEEEEEETTTTB------------STTTSSSTSSSHHHH
T ss_pred             EcCCcCCCChhHccCCc---------------------ccccccceeeccCCC------------CCcCccccCCCccch
Confidence            79999999999972211                     123445566776552            112345678899999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH-hCCCcEEEEccCCCCC-CCCCc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT-FDGVDVISLSLGSSLP-LSTYV  158 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~~-~~~~~  158 (639)
                      |||||+|.. . .     ......|+||+|+|+.+|++...+ .....++++|++++ +.+++|||||||.... .....
T Consensus        52 va~ii~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~  123 (282)
T PF00082_consen   52 VAGIIAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY  123 (282)
T ss_dssp             HHHHHHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred             hhhhccccc-c-c-----cccccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccccccccc
Confidence            999999996 2 1     123458999999999999987634 78888999999999 8999999999998320 11123


Q ss_pred             cchHHHHHHHhHhCCcEEEEeccCCCCCCCc---ccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCc
Q 006600          159 DDIISIGSFHAVAKGISVVCSAGNSGPYPQT---VINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNK  235 (639)
Q Consensus       159 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  235 (639)
                      .+.+..+++.+.++|+++|+||||+|.....   .+...+++|+||++...                             
T Consensus       124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-----------------------------  174 (282)
T PF00082_consen  124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-----------------------------  174 (282)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-----------------------------
T ss_pred             ccccccccccccccCcceeeccccccccccccccccccccccccccccccc-----------------------------
Confidence            3456667778889999999999999876543   34445788999864421                             


Q ss_pred             eeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccc
Q 006600          236 FYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGV  315 (639)
Q Consensus       236 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~i  315 (639)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (282)
T PF00082_consen  175 --------------------------------------------------------------------------------  174 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCc
Q 006600          316 PYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLE  395 (639)
Q Consensus       316 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~  395 (639)
                                                             +.++.||++|+.. .++++||||+|||.+|+++++...   
T Consensus       175 ---------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~---  211 (282)
T PF00082_consen  175 ---------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD---  211 (282)
T ss_dssp             ---------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE---
T ss_pred             ---------------------------------------ccccccccccccc-cccccccccccccccccccccccc---
Confidence                                                   2557899997543 278999999999999998887421   


Q ss_pred             cCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCC
Q 006600          396 QTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY  475 (639)
Q Consensus       396 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~  475 (639)
                                 ...|..++|||||||+|||++|||+|++|+|++.+||.+|++||.+++..          ........|
T Consensus       212 -----------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~----------~~~~~~~~~  270 (282)
T PF00082_consen  212 -----------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST----------NGEGYDNSY  270 (282)
T ss_dssp             -----------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET----------TSSSSHHHH
T ss_pred             -----------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC----------CCCCCCCCc
Confidence                       14688999999999999999999999999999999999999999976411          123445578


Q ss_pred             CCCCCCcCCcCC
Q 006600          476 GGGHVDPNKAMD  487 (639)
Q Consensus       476 G~G~id~~~A~~  487 (639)
                      |+|+||+.+|++
T Consensus       271 G~G~in~~~a~~  282 (282)
T PF00082_consen  271 GWGLINAEKALN  282 (282)
T ss_dssp             TTSBE-HHHHHH
T ss_pred             cCChhCHHHHhC
Confidence            999999999863

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=100.00  E-value=5.8e-39  Score=333.13  Aligned_cols=266  Identities=31%  Similarity=0.332  Sum_probs=192.6

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+...            .+..|    .++++.....+.+.                  +.|..+||||
T Consensus        14 iDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~~~------------------~~d~~~HGT~   59 (293)
T cd04842          14 ADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLSDT------------------KDDVDGHGTH   59 (293)
T ss_pred             EecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccCCC------------------CCCCCCCcch
Confidence            79999999999977532            01111    34555544444321                  2278999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCcc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG-GCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVD  159 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~  159 (639)
                      |||||+|...+...     ...+.||||+|+|+.+|++...+ .....++..+++++.+.+++|||||||... ..  ..
T Consensus        60 vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-~~--~~  131 (293)
T cd04842          60 VAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPV-NN--GY  131 (293)
T ss_pred             hheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCC-cc--cc
Confidence            99999998643211     11469999999999999998643 356677889999999999999999999884 11  12


Q ss_pred             chHHHHHHHhH-h-CCcEEEEeccCCCCCCC---cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCC
Q 006600          160 DIISIGSFHAV-A-KGISVVCSAGNSGPYPQ---TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLN  234 (639)
Q Consensus       160 ~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  234 (639)
                      .....++.++. + +|++||+||||+|....   ..+...+++|+|||++.......                       
T Consensus       132 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------  188 (293)
T cd04842         132 TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG-----------------------  188 (293)
T ss_pred             chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-----------------------
Confidence            33444554443 3 79999999999997654   45567799999998765421000                       


Q ss_pred             ceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCcccc
Q 006600          235 KFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFG  314 (639)
Q Consensus       235 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~  314 (639)
                                           ..|..                                                      
T Consensus       189 ---------------------~~~~~------------------------------------------------------  193 (293)
T cd04842         189 ---------------------EGGLG------------------------------------------------------  193 (293)
T ss_pred             ---------------------ccccc------------------------------------------------------
Confidence                                 00000                                                      


Q ss_pred             ccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCC
Q 006600          315 VPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNL  394 (639)
Q Consensus       315 ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~  394 (639)
                                                         .....+.++.||++||+.  ++++||||+|||++|+++...... 
T Consensus       194 -----------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~-  235 (293)
T cd04842         194 -----------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG-  235 (293)
T ss_pred             -----------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC-
Confidence                                               001235789999999998  899999999999999998754200 


Q ss_pred             ccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhcCc
Q 006600          395 EQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH-----P---TWSPAAIKSAIVTTAS  451 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~ls~~~vk~~L~~TA~  451 (639)
                       .....      ...|..++|||||||+|||++|||+|++     |   .+++.++|++|++||+
T Consensus       236 -~~~~~------~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~  293 (293)
T cd04842         236 -IGDTS------DSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR  293 (293)
T ss_pred             -CCCCC------hhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence             00001      5789999999999999999999999985     4   6677899999999985

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=100.00  E-value=5.1e-39  Score=328.05  Aligned_cols=205  Identities=20%  Similarity=0.088  Sum_probs=149.1

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh----CCCcEEEE
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF----DGVDVISL  146 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~----~g~dVIn~  146 (639)
                      +.|+.+|||||||||+|..+         ..++.||||+|+|+.+|++.      .++++++|++|++    .++.+|||
T Consensus        47 ~~d~~gHGT~VAGiIaa~~n---------~~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~  111 (277)
T cd04843          47 DQADSDHGTAVLGIIVAKDN---------GIGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEM  111 (277)
T ss_pred             CCCCCCCcchhheeeeeecC---------CCceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEc
Confidence            45678999999999998731         12358999999999999985      3456677777776    35678999


Q ss_pred             ccCCCCCCCC----CccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc-------------CCCCcEEEEEeeccCCcc
Q 006600          147 SLGSSLPLST----YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI-------------NTAPWVITVAASTIDRAF  209 (639)
Q Consensus       147 SlG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVgA~~~~~~~  209 (639)
                      |||.......    .....+..++.++.++|+++|+||||++.......             ...+++|+|||++.+.  
T Consensus       112 s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~--  189 (277)
T cd04843         112 QTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT--  189 (277)
T ss_pred             cccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC--
Confidence            9998741110    12334566888888999999999999986422111             0124577777643210  


Q ss_pred             ceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHH
Q 006600          210 PTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAAR  289 (639)
Q Consensus       210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~  289 (639)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (277)
T cd04843         190 --------------------------------------------------------------------------------  189 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCC
Q 006600          290 TVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLS  369 (639)
Q Consensus       290 ~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~  369 (639)
                                                                                      ...++.||++|+..  
T Consensus       190 ----------------------------------------------------------------~~~~~~fSn~G~~v--  203 (277)
T cd04843         190 ----------------------------------------------------------------GHTRLAFSNYGSRV--  203 (277)
T ss_pred             ----------------------------------------------------------------CCccccccCCCCcc--
Confidence                                                                            01378999999987  


Q ss_pred             CCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHH
Q 006600          370 PSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----I-HPTWSPAAIKS  444 (639)
Q Consensus       370 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ls~~~vk~  444 (639)
                            ||.|||++|+++.+........      +. .+.|..++|||||||||||++|||++    + +|+|+++|||+
T Consensus       204 ------di~APG~~i~s~~~~~~~~~~~------~~-~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~  270 (277)
T cd04843         204 ------DVYGWGENVTTTGYGDLQDLGG------EN-QDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRE  270 (277)
T ss_pred             ------ceEcCCCCeEecCCCCcccccC------CC-CcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence                  9999999999998753211000      00 23457899999999999999999975    4 49999999999


Q ss_pred             HHHhcCc
Q 006600          445 AIVTTAS  451 (639)
Q Consensus       445 ~L~~TA~  451 (639)
                      +|+.|+.
T Consensus       271 ~L~~t~~  277 (277)
T cd04843         271 LLTATGT  277 (277)
T ss_pred             HHHhcCC
Confidence            9999974

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=100.00  E-value=8e-39  Score=332.21  Aligned_cols=107  Identities=33%  Similarity=0.338  Sum_probs=86.8

Q ss_pred             CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006600           69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSL  148 (639)
Q Consensus        69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~Sl  148 (639)
                      .+..|..||||||||||+|+..            ..||||+|+|+.+|+++..+.....+++++|++|++++++||||||
T Consensus        47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~  114 (294)
T cd07482          47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL  114 (294)
T ss_pred             CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence            4556789999999999998742            2499999999999999875556889999999999999999999999


Q ss_pred             CCCCCCCC------CccchHHHHHHHhHhCCcEEEEeccCCCCCC
Q 006600          149 GSSLPLST------YVDDIISIGSFHAVAKGISVVCSAGNSGPYP  187 (639)
Q Consensus       149 G~~~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~  187 (639)
                      |.......      ...+.+..+++++.++|++||+||||+|...
T Consensus       115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~  159 (294)
T cd07482         115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV  159 (294)
T ss_pred             ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence            98641110      1123466777788899999999999999643

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=100.00  E-value=1.3e-38  Score=330.54  Aligned_cols=227  Identities=30%  Similarity=0.331  Sum_probs=159.7

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS  150 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~  150 (639)
                      +.|..||||||||||+|+..+         +...||||+|+|+.+|++..........+++||+||++.|++|||||||.
T Consensus        42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~  112 (297)
T cd07480          42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA  112 (297)
T ss_pred             CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence            467889999999999998642         23479999999999999987677778889999999999999999999998


Q ss_pred             CCCC--------CCCccchHHHHHHHh---------------HhCCcEEEEeccCCCCCCCcccC-----CCCcEEEEEe
Q 006600          151 SLPL--------STYVDDIISIGSFHA---------------VAKGISVVCSAGNSGPYPQTVIN-----TAPWVITVAA  202 (639)
Q Consensus       151 ~~~~--------~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~ap~vitVgA  202 (639)
                      ..++        .......++...+.+               .++|++||+||||+|........     ..++++.|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~  192 (297)
T cd07480         113 DFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA  192 (297)
T ss_pred             CCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence            6411        001122233333333               68999999999999864332211     1123333332


Q ss_pred             eccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcc
Q 006600          203 STIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQR  282 (639)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~  282 (639)
                      ....                                                                            
T Consensus       193 V~~~----------------------------------------------------------------------------  196 (297)
T cd07480         193 VGAL----------------------------------------------------------------------------  196 (297)
T ss_pred             ECCC----------------------------------------------------------------------------
Confidence            2111                                                                            


Q ss_pred             hHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccC
Q 006600          283 SAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSS  362 (639)
Q Consensus       283 ~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS  362 (639)
                                                                                              +....|++
T Consensus       197 ------------------------------------------------------------------------~~~~~~~~  204 (297)
T cd07480         197 ------------------------------------------------------------------------GRTGNFSA  204 (297)
T ss_pred             ------------------------------------------------------------------------CCCCCccc
Confidence                                                                                    11122222


Q ss_pred             CCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHH
Q 006600          363 RGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAI  442 (639)
Q Consensus       363 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~v  442 (639)
                      +.+    ....||||+|||.+|+++.+                 ++.|..++|||||||+|||++|||+|++|.+++.++
T Consensus       205 ~~~----~~~~~~dv~ApG~~i~s~~~-----------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~  263 (297)
T cd07480         205 VAN----FSNGEVDIAAPGVDIVSAAP-----------------GGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRAL  263 (297)
T ss_pred             cCC----CCCCceEEEeCCCCeEeecC-----------------CCcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHH
Confidence            222    22357899999999999877                 578999999999999999999999999999998888


Q ss_pred             HHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcC
Q 006600          443 KSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPN  483 (639)
Q Consensus       443 k~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~  483 (639)
                      +.+|+...+.....        ..........+|+|++++.
T Consensus       264 ~~~l~~~l~~~~~~--------~~~~~~~~~~~g~G~~~~~  296 (297)
T cd07480         264 AALLQARLTAARTT--------QFAPGLDLPDRGVGLGLAP  296 (297)
T ss_pred             HHHHHHHHhhcccC--------CCCCCCChhhcCCceeecC
Confidence            87777432210000        0223345567999999875

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=100.00  E-value=4.8e-39  Score=323.07  Aligned_cols=116  Identities=23%  Similarity=0.262  Sum_probs=94.7

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC------CCCHHHHHHHHHHHHhCCCcEEE
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG------GCSSADLLAAFDDATFDGVDVIS  145 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~dVIn  145 (639)
                      .|..||||||||||+                  |+||+|+|+.+|++...+      .+....+++||+||+++|+||||
T Consensus        46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn  107 (247)
T cd07491          46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS  107 (247)
T ss_pred             CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence            468899999999995                  679999999999998644      45678899999999999999999


Q ss_pred             EccCCCCCCC-CCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cc--cCCCCcEEEEEeecc
Q 006600          146 LSLGSSLPLS-TYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TV--INTAPWVITVAASTI  205 (639)
Q Consensus       146 ~SlG~~~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~ap~vitVgA~~~  205 (639)
                      ||||...... ......+..++.+|.++|++||+||||+|.... ++  +...+++|+|||++.
T Consensus       108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~  171 (247)
T cd07491         108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE  171 (247)
T ss_pred             eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence            9999874110 112567888999999999999999999997654 33  345689999998653

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=100.00  E-value=4.6e-38  Score=324.68  Aligned_cols=112  Identities=31%  Similarity=0.273  Sum_probs=91.2

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ...|+.||||||||++                  .||||+|+|+.+|++..    ..+++++||+||++++++|||||||
T Consensus        56 ~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG  113 (298)
T cd07494          56 PACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWG  113 (298)
T ss_pred             CCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecc
Confidence            3567889999999875                  58999999999999864    4567899999999999999999999


Q ss_pred             CCCCCCC--------CccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccC
Q 006600          150 SSLPLST--------YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTID  206 (639)
Q Consensus       150 ~~~~~~~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~  206 (639)
                      .......        .....+..++++|.++|++||+||||++.   .++...|++|+|||+..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~  175 (298)
T cd07494         114 YDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVD  175 (298)
T ss_pred             cCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEecc
Confidence            8641110        11245778888899999999999999984   457788999999987543

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=100.00  E-value=5.8e-38  Score=312.09  Aligned_cols=184  Identities=27%  Similarity=0.253  Sum_probs=152.8

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .+.|..||||||||||++.                  +|+++|+.+|++...+.+..+++++||+|++++|++|||||||
T Consensus        39 ~~~d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G  100 (222)
T cd07492          39 EGGDKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG  100 (222)
T ss_pred             CCCCCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence            4567889999999999754                  6999999999998767788999999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                      ... .  .....+..+++++.++|+++|+||||++.... .+...+++|+|++.....                      
T Consensus       101 ~~~-~--~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------  154 (222)
T cd07492         101 GPG-D--RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------  154 (222)
T ss_pred             CCC-C--CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------
Confidence            874 1  22356778888898999999999999986433 255668899998643210                      


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (222)
T cd07492         155 --------------------------------------------------------------------------------  154 (222)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS  389 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~  389 (639)
                                                                    ..   +.+++        ++++.|||.+|+++.+
T Consensus       155 ----------------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~  177 (222)
T cd07492         155 ----------------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAP  177 (222)
T ss_pred             ----------------------------------------------Cc---ccccC--------CceEEeCCCCeEeecC
Confidence                                                          01   11233        3499999999999887


Q ss_pred             CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                                       .+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus       178 -----------------~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~  222 (222)
T cd07492         178 -----------------HGRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV  222 (222)
T ss_pred             -----------------CCCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence                             478999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-38  Score=318.71  Aligned_cols=190  Identities=31%  Similarity=0.417  Sum_probs=166.1

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC---------CCc
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD---------GVD  142 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~d  142 (639)
                      .|++||||||||+|+++.              .|||-+++|+++||+.++|.+..+++++++|++++.         +..
T Consensus       254 ~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~s  319 (501)
T KOG1153|consen  254 EDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKS  319 (501)
T ss_pred             cccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCe
Confidence            578999999999999885              699999999999999999999999999999999985         467


Q ss_pred             EEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEE
Q 006600          143 VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTV  221 (639)
Q Consensus       143 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~  221 (639)
                      |.|||+|+..      +-.+..|+++|.+.|+++++||||+-.+.+ +.+..++.+|+|||++..               
T Consensus       320 v~NlSlGg~~------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~---------------  378 (501)
T KOG1153|consen  320 VANLSLGGFR------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN---------------  378 (501)
T ss_pred             EEEEecCCcc------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------
Confidence            9999999863      456889999999999999999999987754 445678899999986432               


Q ss_pred             EeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEE
Q 006600          222 VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIF  301 (639)
Q Consensus       222 ~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~  301 (639)
                                                                                                      
T Consensus       379 --------------------------------------------------------------------------------  378 (501)
T KOG1153|consen  379 --------------------------------------------------------------------------------  378 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCC
Q 006600          302 AKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPG  381 (639)
Q Consensus       302 ~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG  381 (639)
                                                                           +.++.||+||+++        ||-|||
T Consensus       379 -----------------------------------------------------D~iA~FSN~G~CV--------diFAPG  397 (501)
T KOG1153|consen  379 -----------------------------------------------------DTIAFFSNWGKCV--------DIFAPG  397 (501)
T ss_pred             -----------------------------------------------------cchhhhcCcccee--------eeecCc
Confidence                                                                 5889999999999        999999


Q ss_pred             CcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC---------CCHHHHHHHHHhcCcc
Q 006600          382 VNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT---------WSPAAIKSAIVTTASL  452 (639)
Q Consensus       382 ~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------ls~~~vk~~L~~TA~~  452 (639)
                      .+|+|+|-+.               ...-.+.||||||+|||||++|..+..+|.         .++.++|..++.-..+
T Consensus       398 v~IlSs~iGs---------------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~  462 (501)
T KOG1153|consen  398 VNILSSWIGS---------------NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ  462 (501)
T ss_pred             hhhhhhhhcC---------------ccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence            9999999864               467789999999999999999999998873         3788888888776553

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=100.00  E-value=6.7e-36  Score=305.57  Aligned_cols=205  Identities=29%  Similarity=0.321  Sum_probs=163.7

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG-GCSSADLLAAFDDATFDGVDVISLSL  148 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~dVIn~Sl  148 (639)
                      ...|..+|||||||||+|+..+         ..+.|+||+|+|+.+|+++..+ ......+.++++++++.+++||||||
T Consensus        41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~  111 (267)
T cd04848          41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSW  111 (267)
T ss_pred             CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccC
Confidence            3456789999999999998642         3568999999999999998754 67788899999999999999999999


Q ss_pred             CCCCCCCC----------CccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc---------CCCCcEEEEEeeccCCcc
Q 006600          149 GSSLPLST----------YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI---------NTAPWVITVAASTIDRAF  209 (639)
Q Consensus       149 G~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~ap~vitVgA~~~~~~~  209 (639)
                      |.......          .....+...+..+.++|+++|+||||++.......         ...+++|+||+++.+.  
T Consensus       112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--  189 (267)
T cd04848         112 GGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--  189 (267)
T ss_pred             CCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--
Confidence            98852110          14456777788888999999999999986543322         2357788888765331  


Q ss_pred             ceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHH
Q 006600          210 PTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAAR  289 (639)
Q Consensus       210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~  289 (639)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (267)
T cd04848         190 --------------------------------------------------------------------------------  189 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeec--ccCCCCCC
Q 006600          290 TVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAF--FSSRGPSS  367 (639)
Q Consensus       290 ~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~  367 (639)
                                                                                        ....  ||++|+..
T Consensus       190 ------------------------------------------------------------------~~~~~~~s~~~~~~  203 (267)
T cd04848         190 ------------------------------------------------------------------TIASYSYSNRCGVA  203 (267)
T ss_pred             ------------------------------------------------------------------Ccccccccccchhh
Confidence                                                                              2222  47777644


Q ss_pred             CCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 006600          368 LSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIV  447 (639)
Q Consensus       368 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~  447 (639)
                           -.++++|||.+|+++.+..               ...|..++|||||||+|||++|||+|++|+|++++||++|+
T Consensus       204 -----~~~~~~apG~~i~~~~~~~---------------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~  263 (267)
T cd04848         204 -----ANWCLAAPGENIYSTDPDG---------------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL  263 (267)
T ss_pred             -----hhheeecCcCceeecccCC---------------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence                 2347999999999987741               36788999999999999999999999999999999999999


Q ss_pred             hcCc
Q 006600          448 TTAS  451 (639)
Q Consensus       448 ~TA~  451 (639)
                      +||+
T Consensus       264 ~tA~  267 (267)
T cd04848         264 TTAT  267 (267)
T ss_pred             hhcC
Confidence            9985

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=100.00  E-value=2.3e-36  Score=314.18  Aligned_cols=198  Identities=22%  Similarity=0.171  Sum_probs=148.9

Q ss_pred             CCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 006600           73 DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSL  152 (639)
Q Consensus        73 D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~  152 (639)
                      |..||||||||||+|.....        ....||||+|+|+.+|++...  ........++.++.+ .++|||||||...
T Consensus        82 ~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~Vin~S~g~~~  150 (297)
T cd04059          82 DDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD-YIDIYSNSWGPDD  150 (297)
T ss_pred             cccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-CceEEECCCCCCC
Confidence            77899999999999986321        135899999999999999762  444555566665554 5699999999875


Q ss_pred             CCC--CCccchHHHHHHHhHh-----CCcEEEEeccCCCCCCCcc----cCCCCcEEEEEeeccCCccceEEEeCCceEE
Q 006600          153 PLS--TYVDDIISIGSFHAVA-----KGISVVCSAGNSGPYPQTV----INTAPWVITVAASTIDRAFPTAITMGNNQTV  221 (639)
Q Consensus       153 ~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~----~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~  221 (639)
                      ...  .........++.++.+     +|++||+||||+|......    ....|++|+|||++.+               
T Consensus       151 ~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---------------  215 (297)
T cd04059         151 DGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---------------  215 (297)
T ss_pred             CCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC---------------
Confidence            211  1122334455555543     6999999999999732221    1345788899875422               


Q ss_pred             EeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEE
Q 006600          222 VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIF  301 (639)
Q Consensus       222 ~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~  301 (639)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (297)
T cd04059         216 --------------------------------------------------------------------------------  215 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCC
Q 006600          302 AKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPG  381 (639)
Q Consensus       302 ~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG  381 (639)
                                                                           +.++.||++|+..        +++|||
T Consensus       216 -----------------------------------------------------g~~~~~s~~g~~~--------~~~a~g  234 (297)
T cd04059         216 -----------------------------------------------------GVRASYSEVGSSV--------LASAPS  234 (297)
T ss_pred             -----------------------------------------------------CCCcCCCCCCCcE--------EEEecC
Confidence                                                                 3667899999988        899999


Q ss_pred             Cc-------EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006600          382 VN-------ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS  451 (639)
Q Consensus       382 ~~-------I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~  451 (639)
                      ..       |+++.....              ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus       235 ~~~~~~~~~i~~~~~~~~--------------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~  297 (297)
T cd04059         235 GGSGNPEASIVTTDLGGN--------------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR  297 (297)
T ss_pred             CCCCCCCCceEeCCCCCC--------------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence            87       666654310              256788999999999999999999999999999999999999985

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2

Probab=100.00  E-value=1.5e-34  Score=289.55  Aligned_cols=193  Identities=24%  Similarity=0.189  Sum_probs=142.6

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHH--HhCCCcEEEEcc
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDA--TFDGVDVISLSL  148 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~dVIn~Sl  148 (639)
                      ..|..||||||||||||.               .|++|+|+|+..++...    ....+.++++|+  .+.+++||||||
T Consensus        33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~   93 (247)
T cd07488          33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY   93 (247)
T ss_pred             CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence            457899999999999987               35679999987665321    233456777887  668999999999


Q ss_pred             CCCCCCCC-----CccchHHHHHHHhHhC-CcEEEEeccCCCCCCC-----cccCCCCcEEEEEeeccCCccceEEEeCC
Q 006600          149 GSSLPLST-----YVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQ-----TVINTAPWVITVAASTIDRAFPTAITMGN  217 (639)
Q Consensus       149 G~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~ap~vitVgA~~~~~~~~~~~~~~~  217 (639)
                      |... ...     +..+.+..+++++.++ |+++|+||||+|....     ..+..++++|+|||++....         
T Consensus        94 G~~~-~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------  163 (247)
T cd07488          94 GEGL-KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------  163 (247)
T ss_pred             ccCC-CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC---------
Confidence            9875 211     1234567777877766 9999999999997532     22345688999998653310         


Q ss_pred             ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006600          218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV  297 (639)
Q Consensus       218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~  297 (639)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (247)
T cd07488         164 --------------------------------------------------------------------------------  163 (247)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCC--CCCCCCCCCcCC
Q 006600          298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSR--GPSSLSPSVLKP  375 (639)
Q Consensus       298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--Gp~~~~~~~~KP  375 (639)
                                                                              .-..+.||++  +|+.  ++..||
T Consensus       164 --------------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~  185 (247)
T cd07488         164 --------------------------------------------------------RFFASDVSNAGSEINS--YGRRKV  185 (247)
T ss_pred             --------------------------------------------------------cceecccccccCCCCC--CCCcee
Confidence                                                                    0123455554  4554  788999


Q ss_pred             ceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 006600          376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSP------AAIKSAIVTT  449 (639)
Q Consensus       376 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~------~~vk~~L~~T  449 (639)
                      ||+|||++|++  +                 .+.|..++|||||||||||++|||+|++|++.+      -++|.+|++|
T Consensus       186 di~APG~~i~s--~-----------------~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~  246 (247)
T cd07488         186 LIVAPGSNYNL--P-----------------DGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS  246 (247)
T ss_pred             EEEEeeeeEEC--C-----------------CCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence            99999999998  3                 467899999999999999999999999887764      4566666655

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-33  Score=301.76  Aligned_cols=240  Identities=28%  Similarity=0.320  Sum_probs=182.4

Q ss_pred             CCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC--CCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006600           74 AVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP--GGCSSADLLAAFDDATFDGVDVISLSLGSS  151 (639)
Q Consensus        74 ~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~--~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~  151 (639)
                      ..-|||||||||+|+..+.        ....||||+|||+.+++.+..  ...+...+.+|+..++++.+||||||+|-.
T Consensus       309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~  380 (1304)
T KOG1114|consen  309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED  380 (1304)
T ss_pred             CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence            4679999999999998543        245799999999999998653  133456789999999999999999999988


Q ss_pred             CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccC---CCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006600          152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVIN---TAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN  228 (639)
Q Consensus       152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (639)
                      . .-+.....++.+-+.+-++|+++|+||||.||...|++.   ....+|.|||.....+......              
T Consensus       381 a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~--------------  445 (1304)
T KOG1114|consen  381 A-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYS--------------  445 (1304)
T ss_pred             C-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhh--------------
Confidence            6 311222334443333448899999999999999888775   3457999998543321111000              


Q ss_pred             CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                                +.                                                                    
T Consensus       446 ----------~~--------------------------------------------------------------------  447 (1304)
T KOG1114|consen  446 ----------VR--------------------------------------------------------------------  447 (1304)
T ss_pred             ----------hh--------------------------------------------------------------------
Confidence                      00                                                                    


Q ss_pred             CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006600          309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW  388 (639)
Q Consensus       309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~  388 (639)
                                                                .+.......+|||||+.  ||.+--.|+|||+.|-| .
T Consensus       448 ------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs-V  482 (1304)
T KOG1114|consen  448 ------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS-V  482 (1304)
T ss_pred             ------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccC-C
Confidence                                                      01124678899999999  99999999999999844 3


Q ss_pred             CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccCCcCCccccccC
Q 006600          389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDEYAQSIVAEG  464 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~  464 (639)
                      |..             . -..-..|.|||||+|+++|++|||++    .+-.|||..||.+|++||++++.         
T Consensus       483 P~~-------------t-lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~---------  539 (1304)
T KOG1114|consen  483 PQY-------------T-LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD---------  539 (1304)
T ss_pred             chh-------------h-hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc---------
Confidence            322             2 45668899999999999999999965    56789999999999999997631         


Q ss_pred             CCCCCCCCCCCCCCCCCcCCcCC
Q 006600          465 APHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       465 ~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                           -.+|.||.|+|++.+|.+
T Consensus       540 -----id~faqG~GmlqVdkAyE  557 (1304)
T KOG1114|consen  540 -----IDSFAQGQGMLQVDKAYE  557 (1304)
T ss_pred             -----cchhccCcceeehhHHHH
Confidence                 156889999999999976

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=99.97  E-value=2.7e-30  Score=258.91  Aligned_cols=197  Identities=38%  Similarity=0.437  Sum_probs=159.5

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH-hCCCcEEEEcc
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT-FDGVDVISLSL  148 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~dVIn~Sl  148 (639)
                      ...|..+||||||++|++.....         ...|+||+++|+.+|+...........+++++++++ +.+++||||||
T Consensus        39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~  109 (241)
T cd00306          39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL  109 (241)
T ss_pred             CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence            34567899999999999986422         228999999999999998755577889999999999 89999999999


Q ss_pred             CCCCCCCCCccchHHHHHHHhHhC-CcEEEEeccCCCCCCC---cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeE
Q 006600          149 GSSLPLSTYVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQ---TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQ  224 (639)
Q Consensus       149 G~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~  224 (639)
                      |... .  .....+..++.++.++ |+++|+|+||.+....   ..+...+++|+||+++...                 
T Consensus       110 g~~~-~--~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-----------------  169 (241)
T cd00306         110 GGPG-S--PPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-----------------  169 (241)
T ss_pred             CCCC-C--CCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence            9884 2  1345677778888887 9999999999997765   4666789999999765331                 


Q ss_pred             EeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecC
Q 006600          225 AFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKF  304 (639)
Q Consensus       225 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~  304 (639)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (241)
T cd00306         170 --------------------------------------------------------------------------------  169 (241)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCee-ecccCCCCCCCCCCCcCCceEcCCCc
Q 006600          305 PTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEV-AFFSSRGPSSLSPSVLKPDIAAPGVN  383 (639)
Q Consensus       305 ~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG~~  383 (639)
                                                                         .. ..++++|        .|||+.|||..
T Consensus       170 ---------------------------------------------------~~~~~~~~~~--------~~~~~~apg~~  190 (241)
T cd00306         170 ---------------------------------------------------TPASPSSNGG--------AGVDIAAPGGD  190 (241)
T ss_pred             ---------------------------------------------------CccCCcCCCC--------CCceEEeCcCC
Confidence                                                               11 1334444        46699999999


Q ss_pred             EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006600          384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT  449 (639)
Q Consensus       384 I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T  449 (639)
                      +.+.....               ...+..++|||||||+|||++|||+|++|++++.++|++|+.|
T Consensus       191 ~~~~~~~~---------------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t  241 (241)
T cd00306         191 ILSSPTTG---------------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST  241 (241)
T ss_pred             ccCcccCC---------------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence            87751111               5789999999999999999999999999999999999999875

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-30  Score=269.43  Aligned_cols=221  Identities=28%  Similarity=0.378  Sum_probs=184.3

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSS  151 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~  151 (639)
                      .|.-||||.|||+|||...            -.|.||+++|+++|||-+..-.+.++.+.|++||+..++||+|+|+|++
T Consensus       235 dD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP  302 (1033)
T KOG4266|consen  235 DDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP  302 (1033)
T ss_pred             ccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence            3678999999999998742            2688999999999999886778899999999999999999999999988


Q ss_pred             CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCC--CcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTA--PWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a--p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                      .    +.+.|+-.-+-.....+|++|.|+||+||-.++..+++  ..||.||..                          
T Consensus       303 D----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI--------------------------  352 (1033)
T KOG4266|consen  303 D----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI--------------------------  352 (1033)
T ss_pred             c----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------------
Confidence            4    77778877777888999999999999999998888765  345555521                          


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (1033)
T KOG4266|consen  353 --------------------------------------------------------------------------------  352 (1033)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCC----CCCCcCCceEcCCCcEE
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSL----SPSVLKPDIAAPGVNIL  385 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~  385 (639)
                                                                +..+.++.|||||-+.+    .-|++||||++-|..|.
T Consensus       353 ------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~  390 (1033)
T KOG4266|consen  353 ------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVM  390 (1033)
T ss_pred             ------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccc
Confidence                                                      12368999999996643    36899999999999987


Q ss_pred             eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccCCcCCcccc
Q 006600          386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDEYAQSIV  461 (639)
Q Consensus       386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~g~p~~  461 (639)
                      ...-                 ..+...+||||.|+|.|||+++||.+    +.--+.|+-+|++|+..|.++..      
T Consensus       391 GS~v-----------------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg------  447 (1033)
T KOG4266|consen  391 GSKV-----------------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG------  447 (1033)
T ss_pred             cCcc-----------------cccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC------
Confidence            6554                 46678899999999999999999976    33447899999999999998732      


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          462 AEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       462 ~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                              ..-++||+|++|+.++.+
T Consensus       448 --------~NMfEQGaGkldLL~syq  465 (1033)
T KOG4266|consen  448 --------PNMFEQGAGKLDLLESYQ  465 (1033)
T ss_pred             --------CchhhccCcchhHHHHHH
Confidence                    223589999999988876

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=5e-22  Score=220.75  Aligned_cols=201  Identities=37%  Similarity=0.485  Sum_probs=155.8

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC-CCCCHHHHHHHHHHHHhCC--CcEEEEc
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP-GGCSSADLLAAFDDATFDG--VDVISLS  147 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~dVIn~S  147 (639)
                      ..|..+|||||+|++++....       +.....|+||+++++.+|++... +.....+++++++++++.+  +++||||
T Consensus       179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s  251 (508)
T COG1404         179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS  251 (508)
T ss_pred             CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence            468899999999999984211       12246899999999999999865 6777888899999999999  9999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHhHhCC-cEEEEeccCCCCCCCc----ccCCC--CcEEEEEeeccCCccceEEEeCCceE
Q 006600          148 LGSSLPLSTYVDDIISIGSFHAVAKG-ISVVCSAGNSGPYPQT----VINTA--PWVITVAASTIDRAFPTAITMGNNQT  220 (639)
Q Consensus       148 lG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgA~~~~~~~~~~~~~~~~~~  220 (639)
                      +|..  ........+..++..++..| +++|+|+||.+.....    .+...  +.+++|+|...               
T Consensus       252 ~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------  314 (508)
T COG1404         252 LGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------  314 (508)
T ss_pred             CCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence            9985  11134456777788887777 9999999999965421    11111  24444443211               


Q ss_pred             EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006600          221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI  300 (639)
Q Consensus       221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i  300 (639)
                                                                                                      
T Consensus       315 --------------------------------------------------------------------------------  314 (508)
T COG1404         315 --------------------------------------------------------------------------------  314 (508)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcC
Q 006600          301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAP  380 (639)
Q Consensus       301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP  380 (639)
                                                                           .+.+..||++|+..      ..+++||
T Consensus       315 -----------------------------------------------------~~~~~~~s~~g~~~------~~~~~ap  335 (508)
T COG1404         315 -----------------------------------------------------SDTVASFSNDGSPT------GVDIAAP  335 (508)
T ss_pred             -----------------------------------------------------CCccccccccCCCC------CcceeCC
Confidence                                                                 24778899999751      2299999


Q ss_pred             CCcEEe-----ccCCCCCCccCCCCCCCccCCC--ceeeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCc
Q 006600          381 GVNILA-----SWSPVSNLEQTDHVTPNYIPQF--NFKVESGTSMSCPHISGIVALLKAIHP-TWSPAAIKSAIVTTAS  451 (639)
Q Consensus       381 G~~I~s-----a~~~~~~~~~~~~~~~~~~~~~--~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~vk~~L~~TA~  451 (639)
                      |.+|.+     +++                 +.  .|..++||||++|||+|.+||+++.+| .+++.+++..+..++.
T Consensus       336 g~~i~~~~~~~~~~-----------------~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~  397 (508)
T COG1404         336 GVNILSLSAVNTLP-----------------GDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG  397 (508)
T ss_pred             Cccccccccceeee-----------------CCccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence            999987     443                 33  499999999999999999999999999 8999999999888877

>cd04056 Peptidases_S53 Peptidase domain in the S53 family

Probab=99.74  E-value=2.1e-17  Score=175.62  Aligned_cols=105  Identities=26%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             cCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCC-CCCccchHHHHHHHhHhCCc
Q 006600           99 AQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD---GVDVISLSLGSSLPL-STYVDDIISIGSFHAVAKGI  174 (639)
Q Consensus        99 ~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi  174 (639)
                      ......||||+|+|+.|++++..    ...++.++.+++.+   +++|||||||..... .....+.+..++.+|.++||
T Consensus        79 Dv~~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi  154 (361)
T cd04056          79 DVEYAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGI  154 (361)
T ss_pred             hHHHHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCe
Confidence            44567899999999999998642    45677888888887   999999999987411 00123567788888999999


Q ss_pred             EEEEeccCCCCCCC-----------cccCCCCcEEEEEeeccCC
Q 006600          175 SVVCSAGNSGPYPQ-----------TVINTAPWVITVAASTIDR  207 (639)
Q Consensus       175 ~vV~AAGN~G~~~~-----------~~~~~ap~vitVgA~~~~~  207 (639)
                      +||+|+||+|....           ..+...|||++||+++...
T Consensus       155 tvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~  198 (361)
T cd04056         155 TVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT  198 (361)
T ss_pred             EEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence            99999999997643           2345789999999987654

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-

>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.4e-15  Score=149.80  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             CceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCcc--ccccCCCCCCCCCCCCCCCCCCcCCc
Q 006600          408 FNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQS--IVAEGAPHKQADPFDYGGGHVDPNKA  485 (639)
Q Consensus       408 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p--~~~~~~~~~~~~~~~~G~G~id~~~A  485 (639)
                      .....-||||.|||-.||+-||-++++|.|+..+++.+-.-|.++..-....  ..+....-...-+..||+|.+|+.+.
T Consensus       376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam  455 (629)
T KOG3526|consen  376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM  455 (629)
T ss_pred             ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence            4455679999999999999999999999999999998887777764211100  00000022345566799999999887


Q ss_pred             CCCCeeeeCcccchhhhhhcCC
Q 006600          486 MDPGLVYDMEVSDYVRFLCAMG  507 (639)
Q Consensus       486 ~~~~lv~~~~~~~~~~~l~~~~  507 (639)
                      +.-...+...++.|   -|..|
T Consensus       456 v~lak~wktvppry---hc~ag  474 (629)
T KOG3526|consen  456 VMLAKAWKTVPPRY---HCTAG  474 (629)
T ss_pred             HHHHHHhccCCCce---eeccc
Confidence            66433344444433   35555

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

Probab=99.28  E-value=3e-11  Score=111.22  Aligned_cols=114  Identities=22%  Similarity=0.267  Sum_probs=88.7

Q ss_pred             CceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCC---
Q 006600          234 NKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVH---  310 (639)
Q Consensus       234 ~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~---  310 (639)
                      ....++++.+             .|...++...+++|||+||+|  |.|.+.+|..+++++||.++|++++......   
T Consensus        25 ~~~~~lv~~g-------------~g~~~d~~~~dv~GkIvL~~r--g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~   89 (143)
T cd02133          25 GKTYELVDAG-------------LGTPEDFEGKDVKGKIALIQR--GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTL   89 (143)
T ss_pred             CcEEEEEEcc-------------CCchhccCCCCccceEEEEEC--CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccC
Confidence            4466777643             344555666789999999999  8899999999999999999999988765411   


Q ss_pred             -ccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCC
Q 006600          311 -FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSS  367 (639)
Q Consensus       311 -~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~  367 (639)
                       ....||++.|+..+++.|++++++    .+++.+..+.. ..+.+.++.||||||.-
T Consensus        90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g  142 (143)
T cd02133          90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG  142 (143)
T ss_pred             CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence             125789999999999999999988    44455444443 44667899999999963

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

Probab=99.22  E-value=1.4e-10  Score=104.56  Aligned_cols=120  Identities=35%  Similarity=0.642  Sum_probs=96.5

Q ss_pred             EEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcc-hHHHHHHhh
Q 006600          213 ITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQR-SAATAARTV  291 (639)
Q Consensus       213 ~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~-~~~~k~~~~  291 (639)
                      +.++|++.+.|++++....   ..+++++...    .........|.+......+++||||||+|  +.| .+.+|..++
T Consensus         2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~----~~~~~~~~~C~~~~~~~~~v~GkIVlc~~--~~~~~~~~k~~~~   72 (126)
T cd02120           2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSA----NSGDVDASLCLPGSLDPSKVKGKIVLCDR--GGNTSRVAKGDAV   72 (126)
T ss_pred             EEeCCCCEEEEEEccCCCC---CccceEeccC----cCCCCccccCCCCCCChhhccccEEEEeC--CCCccHHHHHHHH
Confidence            6789999999999985442   4567776322    12334557899888888999999999999  778 999999999


Q ss_pred             hcCCceEEEEecCCCCC---CCccccccEEEEchhhHHHHHHHHHhcCCcEEE
Q 006600          292 LDSGGVGLIFAKFPTKD---VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVK  341 (639)
Q Consensus       292 ~~~Ga~g~i~~~~~~~~---~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~  341 (639)
                      +++||.|+|++++..+.   ......+|++.|..++++.|++|++++..++++
T Consensus        73 ~~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~  125 (126)
T cd02120          73 KAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT  125 (126)
T ss_pred             HHcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence            99999999999877654   223468999999999999999999998766554

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

Probab=98.82  E-value=1.5e-08  Score=90.54  Aligned_cols=85  Identities=18%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-----C-C--ccccccEEEEchhhHH
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-----V-H--FSFGVPYIQVDFAIGT  326 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-----~-~--~~~~ip~~~i~~~~~~  326 (639)
                      .+.|.+..+...+++|||+||+|  |.|.|.+|..+++++||.++|++|+....     . .  ....||+++|+..+++
T Consensus        29 ~~gC~~~~~~~~~~~GkIvLv~r--g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~  106 (122)
T cd04816          29 PAGCDASDYDGLDVKGAIVLVDR--GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA  106 (122)
T ss_pred             ccCCCccccCCCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence            47799888877899999999999  89999999999999999999999877632     1 1  3456999999999999


Q ss_pred             HHHHHHHhcCCcEEE
Q 006600          327 SLLTYMEANRNPIVK  341 (639)
Q Consensus       327 ~l~~~~~~~~~~~~~  341 (639)
                      .|++++.++.+.+++
T Consensus       107 ~l~~~l~~g~~v~~~  121 (122)
T cd04816         107 ALRRRLGAGETLELD  121 (122)
T ss_pred             HHHHHHcCCCEEEEe
Confidence            999999888765543

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

Probab=98.81  E-value=2.8e-08  Score=90.31  Aligned_cols=88  Identities=9%  Similarity=0.051  Sum_probs=73.9

Q ss_pred             cccCccCCCCC--CCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC-CC------CCccccccEEEEchh
Q 006600          253 GSARSCESGTL--NATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT-KD------VHFSFGVPYIQVDFA  323 (639)
Q Consensus       253 ~~~~~c~~~~~--~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~-~~------~~~~~~ip~~~i~~~  323 (639)
                      ...+.|.+...  .+.++.|+|+|++|  |.|+|.+|..+++++||.++|+||+.. ..      ......+|+++|+..
T Consensus        42 ~~~~gC~~~~~~~~~~~~~g~IaLV~R--G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~  119 (138)
T cd02122          42 NDHYGCDPDTRFPIPPNGEPWIALIQR--GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNP  119 (138)
T ss_pred             CCcCCCCCCccccCCccCCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence            34578998776  56789999999999  999999999999999999999999886 21      122357899999999


Q ss_pred             hHHHHHHHHHhcCCcEEEE
Q 006600          324 IGTSLLTYMEANRNPIVKF  342 (639)
Q Consensus       324 ~~~~l~~~~~~~~~~~~~i  342 (639)
                      +|+.|+.++.++.+.+++|
T Consensus       120 ~G~~l~~~l~~G~~Vtv~~  138 (138)
T cd02122         120 KGMEILELLERGISVTMVI  138 (138)
T ss_pred             HHHHHHHHHHcCCcEEEeC
Confidence            9999999999988766653

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like

Probab=98.79  E-value=2.3e-08  Score=87.85  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-----C--CccccccEEEEchhhH
Q 006600          253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-----V--HFSFGVPYIQVDFAIG  325 (639)
Q Consensus       253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-----~--~~~~~ip~~~i~~~~~  325 (639)
                      .....|....+...+++|||+|++|  |.|+|.+|..+++++||.++|+||+....     .  .....||+++|+.++|
T Consensus        28 ~~~~gC~~~~~~~~~l~gkIaLV~R--G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG  105 (120)
T cd02129          28 TSSVLCSASDVPPGGLKGKAVVVMR--GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDM  105 (120)
T ss_pred             CCcCCCCccccCccccCCeEEEEEC--CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHH
Confidence            3457799988888889999999999  99999999999999999999999987642     1  1346789999999999


Q ss_pred             HHHHHHHHhc
Q 006600          326 TSLLTYMEAN  335 (639)
Q Consensus       326 ~~l~~~~~~~  335 (639)
                      +.|++.+.++
T Consensus       106 ~~i~~~l~~~  115 (120)
T cd02129         106 LDIQQTFGDS  115 (120)
T ss_pred             HHHHHHhccC
Confidence            9999888743

This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.75  E-value=1.3e-07  Score=83.27  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             EEecccCccEEEEEEEEEcCCCCeeEEEEEeC--------CCC----------c-eEEEecCeEEEcCCCcEEEEEEEEE
Q 006600          539 ITIPELKKSITVSRQVTNVSPMNSVYTARVQA--------PAG----------T-TVRVEPSTLTFNSTRKKLKFKVTFY  599 (639)
Q Consensus       539 ~~~~~~~~~~~~~~tvtn~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~v~~~  599 (639)
                      |+|++.....+++++|+|.|+...+|+++...        ..|          . .+...|.++++ ++|++++|+|+++
T Consensus         1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~   79 (112)
T PF06280_consen    1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT   79 (112)
T ss_dssp             EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred             CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence            45666666799999999999999999998751        111          1 56777888999 6899999999999


Q ss_pred             Eee---cCCCceEEEEEEEEcC-c-eEEEEeEE
Q 006600          600 SRL---RVQGRYSFGNLFWEDG-I-HVVRIPLI  627 (639)
Q Consensus       600 ~~~---~~~~~~~~G~i~~~~~-~-~~v~~P~~  627 (639)
                      +++   ..++.|++|||.+++. . +.+++||+
T Consensus        80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~  112 (112)
T PF06280_consen   80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM  112 (112)
T ss_dssp             --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred             ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence            863   2558999999999985 4 48999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

Probab=98.74  E-value=5.6e-08  Score=85.85  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----C-------CccccccEEEEchh
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----V-------HFSFGVPYIQVDFA  323 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~-------~~~~~ip~~~i~~~  323 (639)
                      .+.|.+.. ...+++|||+|++|  |.|.|.+|..+++++||.++|+||+....    .       .....||+++|+..
T Consensus        21 ~~gC~~~~-~~~~~~g~I~Lv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~   97 (118)
T cd02127          21 LEACEELR-NIHDINGNIALIER--GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK   97 (118)
T ss_pred             cccCCCCC-CccccCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence            46798643 35679999999999  99999999999999999999999876541    1       12357999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEE
Q 006600          324 IGTSLLTYMEANRNPIVKF  342 (639)
Q Consensus       324 ~~~~l~~~~~~~~~~~~~i  342 (639)
                      +|+.|+..+..+..+++.|
T Consensus        98 dG~~L~~~l~~g~~~~~~~  116 (118)
T cd02127          98 NGYMIRKTLERLGLPYAII  116 (118)
T ss_pred             HHHHHHHHHHcCCceEEee
Confidence            9999999999988776654

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

Probab=98.74  E-value=1.4e-07  Score=84.41  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=69.7

Q ss_pred             cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC-CC------CCccccccEEEEchhhHHH
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT-KD------VHFSFGVPYIQVDFAIGTS  327 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~-~~------~~~~~~ip~~~i~~~~~~~  327 (639)
                      ...|.+..+ +.+++|||+|++|  |.|.|.+|..+++++||.++|+||+.. ..      ......||++.|+.++++.
T Consensus        31 ~~gC~~~~~-~~~~~gkIvlv~r--g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~  107 (122)
T cd02130          31 NLGCDAADY-PASVAGNIALIER--GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA  107 (122)
T ss_pred             CCCCCcccC-CcCCCCEEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence            346876555 3579999999999  999999999999999999999998773 22      1134679999999999999


Q ss_pred             HHHHHHhcCCcEEE
Q 006600          328 LLTYMEANRNPIVK  341 (639)
Q Consensus       328 l~~~~~~~~~~~~~  341 (639)
                      |+..++++.+.+++
T Consensus       108 L~~~l~~g~~v~~~  121 (122)
T cd02130         108 LVAALANGGEVSAN  121 (122)
T ss_pred             HHHHHhcCCcEEEe
Confidence            99999998876654

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []

Probab=98.72  E-value=1.7e-08  Score=87.02  Aligned_cols=78  Identities=23%  Similarity=0.371  Sum_probs=64.7

Q ss_pred             cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-------CCccccccEEEEchhhH
Q 006600          253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-------VHFSFGVPYIQVDFAIG  325 (639)
Q Consensus       253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~ip~~~i~~~~~  325 (639)
                      .....|.+......+++||||||+|  |.|+|.+|..+++++||.|+|+++.....       ......||+++|+.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~gkIvlv~r--g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g   94 (101)
T PF02225_consen   17 IDEGDCCPSDYNGSDVKGKIVLVER--GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDG   94 (101)
T ss_dssp             EECCHHHHHHTSTSTCTTSEEEEES--TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHH
T ss_pred             CCcccccccccCCccccceEEEEec--CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHH
Confidence            3456677888889999999999999  99999999999999999999999922111       34568899999999999


Q ss_pred             HHHHHHH
Q 006600          326 TSLLTYM  332 (639)
Q Consensus       326 ~~l~~~~  332 (639)
                      +.|++|+
T Consensus        95 ~~L~~~i  101 (101)
T PF02225_consen   95 EALLAYI  101 (101)
T ss_dssp             HHHHHHH
T ss_pred             hhhhccC
Confidence            9999986

The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

Probab=98.66  E-value=1.1e-07  Score=84.40  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             ccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC--C-----CccccccEEEEchhhHH
Q 006600          254 SARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD--V-----HFSFGVPYIQVDFAIGT  326 (639)
Q Consensus       254 ~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~--~-----~~~~~ip~~~i~~~~~~  326 (639)
                      ..+.|.+.... .+++|||+||.|  +.|.|.+|..+++++||.|+|++++....  .     .....+|+++|+.++++
T Consensus        26 ~~~~C~~~~~~-~~v~GkIvL~~r--g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~  102 (118)
T cd04818          26 NTDGCTAFTNA-AAFAGKIALIDR--GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD  102 (118)
T ss_pred             cccccCCCCcC-CCCCCEEEEEEC--CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence            45679887763 469999999998  88999999999999999999999877643  1     12357999999999999


Q ss_pred             HHHHHHHhcCCcEEE
Q 006600          327 SLLTYMEANRNPIVK  341 (639)
Q Consensus       327 ~l~~~~~~~~~~~~~  341 (639)
                      .|++|++.+...+++
T Consensus       103 ~l~~~l~~g~~v~v~  117 (118)
T cd04818         103 ALKAALAAGGTVTVT  117 (118)
T ss_pred             HHHHHHhcCCcEEEe
Confidence            999999988766554

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

Probab=98.64  E-value=2.4e-07  Score=82.95  Aligned_cols=85  Identities=13%  Similarity=0.096  Sum_probs=68.9

Q ss_pred             cCccCCCCCC--Cc----cccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-C-------------Ccccc
Q 006600          255 ARSCESGTLN--AT----LVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-V-------------HFSFG  314 (639)
Q Consensus       255 ~~~c~~~~~~--~~----~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~-------------~~~~~  314 (639)
                      .+.|.+....  +.    ...++|+|++|  |.|.|.+|..+++++||.++|+||+..+. .             .....
T Consensus        22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~   99 (127)
T cd02125          22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR--GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT   99 (127)
T ss_pred             cccCCCCcccccccccccCCCceEEEEEC--CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence            4678875442  22    37789999999  99999999999999999999999987543 1             11346


Q ss_pred             ccEEEEchhhHHHHHHHHHhcCCcEEE
Q 006600          315 VPYIQVDFAIGTSLLTYMEANRNPIVK  341 (639)
Q Consensus       315 ip~~~i~~~~~~~l~~~~~~~~~~~~~  341 (639)
                      ||+++|+..+|+.|+..+..+...+++
T Consensus       100 IP~v~Is~~~G~~L~~~l~~g~~V~v~  126 (127)
T cd02125         100 IPSALITKAFGEKLKKAISNGEMVVIK  126 (127)
T ss_pred             EeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence            999999999999999999988876654

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

Probab=98.64  E-value=1.3e-07  Score=84.77  Aligned_cols=83  Identities=25%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC------------CC---ccccccEEE
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD------------VH---FSFGVPYIQ  319 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~------------~~---~~~~ip~~~  319 (639)
                      ...|.+... +.+++|||+|++|  |.|+|.+|..+++++||.++|++|+..+.            ..   ....||+++
T Consensus        27 ~~gC~~~~~-~~~~~gkIaLv~R--G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~  103 (126)
T cd02126          27 YRACSEITN-AEEVKGKIAIMER--GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF  103 (126)
T ss_pred             hhcccCCCC-ccccCceEEEEEC--CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence            467886554 5578999999999  99999999999999999999999765431            11   245799999


Q ss_pred             EchhhHHHHHHHHHhcCCcEE
Q 006600          320 VDFAIGTSLLTYMEANRNPIV  340 (639)
Q Consensus       320 i~~~~~~~l~~~~~~~~~~~~  340 (639)
                      |+..+|+.|+..++.+...++
T Consensus       104 I~~~dG~~L~~~l~~~~~~~~  124 (126)
T cd02126         104 LFSKEGSKLLAAIKEHQNVEV  124 (126)
T ss_pred             EEHHHHHHHHHHHHhCCceEE
Confidence            999999999999998776554

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like

Probab=98.63  E-value=1.6e-07  Score=84.31  Aligned_cols=86  Identities=14%  Similarity=0.044  Sum_probs=69.1

Q ss_pred             cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----CCccccccEEEEchhhHHHH
Q 006600          253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----VHFSFGVPYIQVDFAIGTSL  328 (639)
Q Consensus       253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~~~~~~ip~~~i~~~~~~~l  328 (639)
                      ...+.|.+...+..+++|||+|++|  |.|.|.+|..+++++||.++|+|++....    ..+...+|.+.+ +++|+.|
T Consensus        39 ~~~~gC~~~~~~~~~~~g~IaLv~r--g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l  115 (129)
T cd02124          39 VADDACQPLPDDTPDLSGYIVLVRR--GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAW  115 (129)
T ss_pred             CCcccCcCCCcccccccCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHH
Confidence            3457898876666689999999999  88999999999999999999999877543    223344566666 9999999


Q ss_pred             HHHHHhcCCcEEE
Q 006600          329 LTYMEANRNPIVK  341 (639)
Q Consensus       329 ~~~~~~~~~~~~~  341 (639)
                      +..++.+...+++
T Consensus       116 ~~~l~~G~~vtv~  128 (129)
T cd02124         116 IDALAAGSNVTVD  128 (129)
T ss_pred             HHHHhcCCeEEEe
Confidence            9999888765543

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

Probab=98.62  E-value=1.4e-07  Score=86.16  Aligned_cols=82  Identities=13%  Similarity=0.230  Sum_probs=68.5

Q ss_pred             cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCC---------ccccccEEEEchhhH
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVH---------FSFGVPYIQVDFAIG  325 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~ip~~~i~~~~~  325 (639)
                      .+.|.+..   .+++|||+|++|  |.|+|.+|..+++++||.++|+||+......         ....||+++|+..+|
T Consensus        48 ~~gC~~~~---~~~~g~IvLV~R--G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G  122 (139)
T cd02132          48 LDCCSPST---SKLSGSIALVER--GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG  122 (139)
T ss_pred             ccccCCCC---cccCCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence            46788764   378999999999  9999999999999999999999987653311         135799999999999


Q ss_pred             HHHHHHHHhcCCcEEE
Q 006600          326 TSLLTYMEANRNPIVK  341 (639)
Q Consensus       326 ~~l~~~~~~~~~~~~~  341 (639)
                      +.|+..+.++...+++
T Consensus       123 ~~L~~~l~~g~~Vtv~  138 (139)
T cd02132         123 DALNKSLDQGKKVEVL  138 (139)
T ss_pred             HHHHHHHHcCCcEEEe
Confidence            9999999988765543

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd00538 PA PA: Protease-associated (PA) domain

Probab=98.58  E-value=2.1e-07  Score=83.51  Aligned_cols=85  Identities=22%  Similarity=0.299  Sum_probs=70.9

Q ss_pred             ccCccCCCC--CCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----C-----CccccccEEEEch
Q 006600          254 SARSCESGT--LNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----V-----HFSFGVPYIQVDF  322 (639)
Q Consensus       254 ~~~~c~~~~--~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~-----~~~~~ip~~~i~~  322 (639)
                      ....|.+..  +...+++||||||+|  +.|.|.+|..+++++||.|+|++++....    .     .....+|++.|+.
T Consensus        29 ~~~~C~~~~~~~~~~~~~GkIvl~~~--g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~  106 (126)
T cd00538          29 PLVGCGYGTTDDSGADVKGKIVLVRR--GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY  106 (126)
T ss_pred             ceEEEecCcccccCCCccceEEEEEC--CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence            345688776  677889999999998  88999999999999999999999877532    1     1346799999999


Q ss_pred             hhHHHHHHHHHhcCCcEE
Q 006600          323 AIGTSLLTYMEANRNPIV  340 (639)
Q Consensus       323 ~~~~~l~~~~~~~~~~~~  340 (639)
                      ++++.|++++.++.+.++
T Consensus       107 ~~g~~l~~~~~~~~~v~~  124 (126)
T cd00538         107 ADGEALLSLLEAGKTVTV  124 (126)
T ss_pred             HHHHHHHHHHhcCCceEE
Confidence            999999999998765544

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1

Probab=98.58  E-value=2.1e-07  Score=81.98  Aligned_cols=79  Identities=9%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-----C----CccccccEEEEchh
Q 006600          253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-----V----HFSFGVPYIQVDFA  323 (639)
Q Consensus       253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-----~----~~~~~ip~~~i~~~  323 (639)
                      ...+.|.+.  +..+++|||+|++|  |.|+|.+|..+++++||.++|+||+....     .    .....||+++++.+
T Consensus        25 ~p~~gC~~~--~~~~l~gkIvLV~R--G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~  100 (117)
T cd04813          25 SPTDACSLQ--EHAEIDGKVALVLR--GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRT  100 (117)
T ss_pred             CCCCCCCCC--CcCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHH
Confidence            345789766  55889999999999  99999999999999999999999876542     1    23357999999999


Q ss_pred             hHHHHHHHHHhc
Q 006600          324 IGTSLLTYMEAN  335 (639)
Q Consensus       324 ~~~~l~~~~~~~  335 (639)
                      ++++|+.++.++
T Consensus       101 ~g~~L~~l~~~~  112 (117)
T cd04813         101 SYHLLSSLLPKS  112 (117)
T ss_pred             HHHHHHHhcccc
Confidence            999999887654

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530

Probab=98.51  E-value=4e-07  Score=82.35  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=60.7

Q ss_pred             CCCCccccccEEEEEeCCCcch-----HHHHHHhhhcCCceEEEEecCC--CCC----CC---ccccccEEEEchhhHHH
Q 006600          262 TLNATLVRGKIVICFQSQFQRS-----AATAARTVLDSGGVGLIFAKFP--TKD----VH---FSFGVPYIQVDFAIGTS  327 (639)
Q Consensus       262 ~~~~~~~~gkivl~~~~~g~~~-----~~~k~~~~~~~Ga~g~i~~~~~--~~~----~~---~~~~ip~~~i~~~~~~~  327 (639)
                      ++...+++|||+|++|  |.|.     |.+|.++++++||.++|+||+.  .+.    +.   ....||+++|++++++.
T Consensus        49 d~~~~d~~GkIaLI~R--G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~  126 (139)
T cd04817          49 SYICGGMAGKICLIER--GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA  126 (139)
T ss_pred             cccCCCcCccEEEEEC--CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence            3445679999999999  8999     9999999999999999999997  332    12   14689999999999999


Q ss_pred             HHHHHHhc
Q 006600          328 LLTYMEAN  335 (639)
Q Consensus       328 l~~~~~~~  335 (639)
                      |+..+..+
T Consensus       127 L~~~l~~~  134 (139)
T cd04817         127 LLAALGQS  134 (139)
T ss_pred             HHHHhcCC
Confidence            99988544

This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

Probab=98.46  E-value=6.9e-07  Score=82.92  Aligned_cols=81  Identities=17%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             cCccCCCCCCC---ccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----CC-----ccccccEEEEch
Q 006600          255 ARSCESGTLNA---TLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----VH-----FSFGVPYIQVDF  322 (639)
Q Consensus       255 ~~~c~~~~~~~---~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~~-----~~~~ip~~~i~~  322 (639)
                      .+.|.+....+   .++.|+|+|++|  |.|+|.+|..+++++||.++|++|+..+.    ..     ....||+++|+.
T Consensus        50 ~~gC~~~~~~~~~~~~~~g~IvLV~R--G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~  127 (153)
T cd02123          50 LNACSPIENPPLNSNASGSFIVLIRR--GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK  127 (153)
T ss_pred             cccCCCCcccccccccCCCeEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence            46798766544   789999999999  99999999999999999999999987553    11     145899999999


Q ss_pred             hhHHHHHHHHHhcCC
Q 006600          323 AIGTSLLTYMEANRN  337 (639)
Q Consensus       323 ~~~~~l~~~~~~~~~  337 (639)
                      .+++.|+.++.....
T Consensus       128 ~dg~~L~~~l~~~~~  142 (153)
T cd02123         128 STGEILKKYASYEKG  142 (153)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            999999999987654

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2

Probab=98.26  E-value=1.2e-05  Score=72.21  Aligned_cols=75  Identities=13%  Similarity=0.105  Sum_probs=62.2

Q ss_pred             CCCCccccccEEEEEeCCCcc--hHHHHHHhhhcCCceEEEEecCCCCCC----------CccccccEEEEchhhHHHHH
Q 006600          262 TLNATLVRGKIVICFQSQFQR--SAATAARTVLDSGGVGLIFAKFPTKDV----------HFSFGVPYIQVDFAIGTSLL  329 (639)
Q Consensus       262 ~~~~~~~~gkivl~~~~~g~~--~~~~k~~~~~~~Ga~g~i~~~~~~~~~----------~~~~~ip~~~i~~~~~~~l~  329 (639)
                      ++...+++|||+++++  +.|  .+.+|..++.++||.|+|++++.....          .....||++.|+.++++.|.
T Consensus        37 d~~~~~v~GkIvlv~~--g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~  114 (127)
T cd04819          37 DFDGLDLEGKIAVVKR--DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA  114 (127)
T ss_pred             HcCCCCCCCeEEEEEc--CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence            3446679999999999  778  899999999999999999998765531          12357999999999999999


Q ss_pred             HHHHhcCCc
Q 006600          330 TYMEANRNP  338 (639)
Q Consensus       330 ~~~~~~~~~  338 (639)
                      +.++.+...
T Consensus       115 ~~l~~g~~~  123 (127)
T cd04819         115 RVAERNDTL  123 (127)
T ss_pred             HHHhcCCce
Confidence            999876543

A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola

>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00026  Score=82.74  Aligned_cols=114  Identities=23%  Similarity=0.305  Sum_probs=66.1

Q ss_pred             CCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC
Q 006600           74 AVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGV-DVISLSLGSSL  152 (639)
Q Consensus        74 ~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~  152 (639)
                      ..+|+||=+.-+           -++-....-+||+|+|..+=.-    ......+..|+.+-...-+ -+|-+||+...
T Consensus       270 g~~~~~~g~~E~-----------sLDVE~s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~  334 (1174)
T COG4934         270 GIGSGTGGAEET-----------SLDVEWSHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAE  334 (1174)
T ss_pred             CCCCCCCccccc-----------eeehhhhhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHH
Confidence            457877744311           1233445678999999988662    1222222233332222111 33335666533


Q ss_pred             -CCCCC--ccchHHHHHHHhHhCCcEEEEeccCCCCCCCc--------ccCCCCcEEEEEe
Q 006600          153 -PLSTY--VDDIISIGSFHAVAKGISVVCSAGNSGPYPQT--------VINTAPWVITVAA  202 (639)
Q Consensus       153 -~~~~~--~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA  202 (639)
                       .++++  .-+.+......|.++||.+++|+|.+|....+        .+..+|+|++||-
T Consensus       335 ~~~~~~~~~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG  395 (1174)
T COG4934         335 FQGPISPGYADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG  395 (1174)
T ss_pred             hccCCChHHHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence             12222  22455566667889999999999999865432        2346799999995

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2

Probab=97.40  E-value=0.00041  Score=62.91  Aligned_cols=76  Identities=18%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CCccccccEEEEEeCCCcc------hHHHH-------HHhhhcCCceEEEEecCCCC------C----C-CccccccEEE
Q 006600          264 NATLVRGKIVICFQSQFQR------SAATA-------ARTVLDSGGVGLIFAKFPTK------D----V-HFSFGVPYIQ  319 (639)
Q Consensus       264 ~~~~~~gkivl~~~~~g~~------~~~~k-------~~~~~~~Ga~g~i~~~~~~~------~----~-~~~~~ip~~~  319 (639)
                      ...+++||||++.+  +.|      .|..|       ...+++.||.++|+++....      .    . .....||++.
T Consensus        34 ~~~~v~GKIvlv~~--~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~  111 (134)
T cd04815          34 PAGAVKGKIVFFNQ--PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA  111 (134)
T ss_pred             chhhcCCeEEEecC--CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence            45689999999999  889      88888       79999999999999985421      1    1 2235699999


Q ss_pred             EchhhHHHHHHHHHhcCCcEEE
Q 006600          320 VDFAIGTSLLTYMEANRNPIVK  341 (639)
Q Consensus       320 i~~~~~~~l~~~~~~~~~~~~~  341 (639)
                      |+.++++.|...++.+..+.++
T Consensus       112 is~ed~~~L~r~l~~g~~v~~~  133 (134)
T cd04815         112 ISVEDADMLERLAARGKPIRVN  133 (134)
T ss_pred             echhcHHHHHHHHhCCCCeEEe
Confidence            9999999999999988765543

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a

>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00091  Score=72.42  Aligned_cols=74  Identities=26%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          412 VESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       412 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                      --.|||-++|+.||+.+|.++++|.++..++..++..++..........+.+  .....-...+|+|++|+..-+.
T Consensus       251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n--~~g~~~~h~~g~~~~~~~~~~~  324 (431)
T KOG3525|consen  251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSN--GAGGLVSHLYGFGLLDAKALVS  324 (431)
T ss_pred             cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEe--cCCceeeeeecccccCcchhhh
Confidence            3469999999999999999999999999999999998888653322222222  1222233358999999977665

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)

Probab=96.99  E-value=0.0013  Score=62.32  Aligned_cols=68  Identities=21%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC--------------------------------CC--
Q 006600          265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD--------------------------------VH--  310 (639)
Q Consensus       265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~--------------------------------~~--  310 (639)
                      ..+++|||+|+++  |.|.+.+|..+|+++||.|+|+|++..+.                                .+  
T Consensus        51 gv~v~GkIvLvr~--G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~  128 (183)
T cd02128          51 GVSVNGSVVLVRA--GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS  128 (183)
T ss_pred             CCCCCCeEEEEEC--CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence            4679999999999  88999999999999999999999874211                                00  


Q ss_pred             ---ccccccEEEEchhhHHHHHHHHHh
Q 006600          311 ---FSFGVPYIQVDFAIGTSLLTYMEA  334 (639)
Q Consensus       311 ---~~~~ip~~~i~~~~~~~l~~~~~~  334 (639)
                         .--.||+.-|+..++..|++.+.-
T Consensus       129 ~~~~lP~IPs~PIS~~da~~lL~~l~G  155 (183)
T cd02128         129 QSSGLPNIPAQTISAAAAAKLLSKMGG  155 (183)
T ss_pred             cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence               013488999999999999987753

This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=96.96  E-value=0.0018  Score=68.37  Aligned_cols=78  Identities=15%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC---------CCccccccEEEEchhhHHHHHHHHHhc
Q 006600          265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD---------VHFSFGVPYIQVDFAIGTSLLTYMEAN  335 (639)
Q Consensus       265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~ip~~~i~~~~~~~l~~~~~~~  335 (639)
                      ...+++|++++.|  |+|.|.+|...++++||.++++.|+..+.         ...+..||+++|.+++++.+......+
T Consensus        91 ~~kl~~~~~~v~R--GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~  168 (541)
T KOG2442|consen   91 QSKLSGKVALVFR--GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN  168 (541)
T ss_pred             CccccceeEEEec--ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence            4568999999999  99999999999999999999999995433         224578999999999999999877777


Q ss_pred             CCcEEEEEe
Q 006600          336 RNPIVKFSF  344 (639)
Q Consensus       336 ~~~~~~i~~  344 (639)
                      .+.++.+..
T Consensus       169 ~~V~~~lYa  177 (541)
T KOG2442|consen  169 DNVELALYA  177 (541)
T ss_pred             CeEEEEEEC
Confidence            766554443

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3

Probab=96.53  E-value=0.0089  Score=55.01  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             cCccCCCCCCCccccccEEEEEeCC----------------CcchHHHHHHhhhcCCceEEEEecCCCCCCCccccc---
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQ----------------FQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGV---  315 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~----------------g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~i---  315 (639)
                      ...|....+...+++|||||+.+..                ..|.+..|..++.+.||.|+|+|++.....+.....   
T Consensus        33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~  112 (151)
T cd04822          33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRF  112 (151)
T ss_pred             ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCccccccccc
Confidence            3557767777889999999998741                127889999999999999999998876542221111   


Q ss_pred             ---cEEEEchhhHHHHHHH
Q 006600          316 ---PYIQVDFAIGTSLLTY  331 (639)
Q Consensus       316 ---p~~~i~~~~~~~l~~~  331 (639)
                         ....++....+.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~  131 (151)
T cd04822         113 GGTAPQRVDIAAADPWFTA  131 (151)
T ss_pred             CccceEEechHHHHHHhhh
Confidence               2555666665555543

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=96.45  E-value=0.089  Score=45.03  Aligned_cols=82  Identities=17%  Similarity=0.200  Sum_probs=60.5

Q ss_pred             ccEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEcCceEEEEe
Q 006600          546 KSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIP  625 (639)
Q Consensus       546 ~~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~~~v~~P  625 (639)
                      ...+.+++|+|.|..+..|++.........++++|..-.+ ++|++.+++|++...  .....+.+.|...-....+.+|
T Consensus        20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~--~~~g~~~~~l~i~~e~~~~~i~   96 (102)
T PF14874_consen   20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT--KPLGDYEGSLVITTEGGSFEIP   96 (102)
T ss_pred             CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC--CCCceEEEEEEEEECCeEEEEE
Confidence            4667778899999999999997654334567777776555 679999999999843  2233468888877666778888


Q ss_pred             EEEEe
Q 006600          626 LIVRT  630 (639)
Q Consensus       626 ~~~~~  630 (639)
                      +-+..
T Consensus        97 v~a~~  101 (102)
T PF14874_consen   97 VKAEV  101 (102)
T ss_pred             EEEEE
Confidence            76654

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1

Probab=96.28  E-value=0.0059  Score=55.51  Aligned_cols=64  Identities=16%  Similarity=0.096  Sum_probs=49.4

Q ss_pred             ceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcc------------------hHHHHHHhhhcCCc
Q 006600          235 KFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQR------------------SAATAARTVLDSGG  296 (639)
Q Consensus       235 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~------------------~~~~k~~~~~~~Ga  296 (639)
                      ...|+++.+-.       .....|...++...|++||||++.+  |.|                  .+..|..++.++||
T Consensus        20 ~~aelVfvGyG-------i~a~~~~~dDYag~DVkGKIVlv~~--g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA   90 (142)
T cd04814          20 KDAPLVFVGYG-------IKAPELSWDDYAGLDVKGKVVVVLR--NDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGA   90 (142)
T ss_pred             cceeeEEecCC-------cCCCCCChhhcCCCCCCCcEEEEEc--CCCCcccccccccccccccccCHHHHHHHHHHCCC
Confidence            35666665321       1234677788888999999999998  555                  57889999999999


Q ss_pred             eEEEEecCCCC
Q 006600          297 VGLIFAKFPTK  307 (639)
Q Consensus       297 ~g~i~~~~~~~  307 (639)
                      .|+|++++...
T Consensus        91 ~gvIii~~~~~  101 (142)
T cd04814          91 AGVLIVHELAP  101 (142)
T ss_pred             cEEEEEeCCCc
Confidence            99999988653

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1

Probab=96.18  E-value=0.0083  Score=54.24  Aligned_cols=51  Identities=25%  Similarity=0.325  Sum_probs=42.9

Q ss_pred             cCccCCCCCCCccccccEEEEEeCCCcc------------hHHHHHHhhhcCCceEEEEecCCCC
Q 006600          255 ARSCESGTLNATLVRGKIVICFQSQFQR------------SAATAARTVLDSGGVGLIFAKFPTK  307 (639)
Q Consensus       255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~------------~~~~k~~~~~~~Ga~g~i~~~~~~~  307 (639)
                      ...|...++...+++|||||+.+  +.|            .+.+|.+++.++||.|+|+++....
T Consensus        35 ~~~~~~~Dy~~iDVkGKIVlv~~--g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~   97 (137)
T cd04820          35 APELGHDDYAGLDVKGKIVVVLS--GGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS   97 (137)
T ss_pred             ccCcCHhhccCCCCCCeEEEEEc--CCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence            35677777778899999999998  554            3789999999999999999988654

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=95.88  E-value=0.029  Score=45.63  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             ccEEEEEEEEEcCCCC-eeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEee-cCCCce
Q 006600          546 KSITVSRQVTNVSPMN-SVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRL-RVQGRY  608 (639)
Q Consensus       546 ~~~~~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~  608 (639)
                      ...+++.+|+|.|... ...++++..|+|-.+...|.++.--++|++++++++|+++. +..+.|
T Consensus         5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y   69 (78)
T PF10633_consen    5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY   69 (78)
T ss_dssp             EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred             CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence            4688899999999755 56888899999999888888776447899999999999873 333444

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)

Probab=95.40  E-value=0.017  Score=52.54  Aligned_cols=41  Identities=15%  Similarity=0.012  Sum_probs=37.1

Q ss_pred             ccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          266 TLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       266 ~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                      .+++|||+|++.  |...+..|.++|++.||.|+|||.++.+.
T Consensus        37 V~v~GkIvi~Ry--G~~~RG~Kv~~A~~~GA~GviIYsDP~d~   77 (153)
T cd02131          37 MNVTNQIALLKL--GQAPLLYKLSLLEEAGFGGVLLYVDPCDL   77 (153)
T ss_pred             CCccceEEEEec--cCcchHHHHHHHHHCCCeEEEEecChhhc
Confidence            679999999999  78889999999999999999999887543

This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=95.30  E-value=0.019  Score=51.60  Aligned_cols=85  Identities=9%  Similarity=0.059  Sum_probs=63.7

Q ss_pred             cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC---------CC----ccccccEEE
Q 006600          253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD---------VH----FSFGVPYIQ  319 (639)
Q Consensus       253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---------~~----~~~~ip~~~  319 (639)
                      ....+|... .+..+..+.+++++|  |.|+|..|..+++++||.++|+.++....         ++    +...||+.+
T Consensus        72 dPp~aC~el-rN~~f~~d~vaL~eR--GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~f  148 (193)
T KOG3920|consen   72 DPPHACEEL-RNEIFAPDSVALMER--GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVF  148 (193)
T ss_pred             CChhHHHHH-hhcccCCCcEEEEec--CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEE
Confidence            345677654 234567889999999  99999999999999999999998776543         22    347799999


Q ss_pred             EchhhHHHHHHHHHhcCCcEE
Q 006600          320 VDFAIGTSLLTYMEANRNPIV  340 (639)
Q Consensus       320 i~~~~~~~l~~~~~~~~~~~~  340 (639)
                      +...+|..++.-++.-...-+
T Consensus       149 llg~~Gy~ir~sL~r~~r~ha  169 (193)
T KOG3920|consen  149 LLGVTGYYIRVSLKRYFRDHA  169 (193)
T ss_pred             EeccceEEEehhHHHhCCccE
Confidence            988888776666655443333

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.074  Score=55.26  Aligned_cols=78  Identities=13%  Similarity=0.036  Sum_probs=61.5

Q ss_pred             CccCCCCC---CCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-------CCccccccEEEEchhhH
Q 006600          256 RSCESGTL---NATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-------VHFSFGVPYIQVDFAIG  325 (639)
Q Consensus       256 ~~c~~~~~---~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~ip~~~i~~~~~  325 (639)
                      ++|.+...   ........++++.|  |.|+|.+|..+|+.+|..+.|+||+....       .+....+++.+++...|
T Consensus        63 ~aC~~i~~~p~~~~~~~~~laLI~R--g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g  140 (348)
T KOG4628|consen   63 NACNPITNFPEHSTRSTSFLALIRR--GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG  140 (348)
T ss_pred             cccCccccCccCCCCCcceEEEEEc--cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence            56776332   23445678999999  88999999999999999999999977654       23457789999999999


Q ss_pred             HHHHHHHHhc
Q 006600          326 TSLLTYMEAN  335 (639)
Q Consensus       326 ~~l~~~~~~~  335 (639)
                      +.|++|....
T Consensus       141 e~l~~~~~~~  150 (348)
T KOG4628|consen  141 ELLSSYAGRT  150 (348)
T ss_pred             HHHHHhhccc
Confidence            9999875443

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like

Probab=95.09  E-value=0.021  Score=56.03  Aligned_cols=41  Identities=27%  Similarity=0.250  Sum_probs=37.1

Q ss_pred             CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCC
Q 006600          265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTK  307 (639)
Q Consensus       265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~  307 (639)
                      ..+++|||||+++  |.+.+.+|..+|++.||.|+|+|+...+
T Consensus        67 gvdv~GKIvLvr~--G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d  107 (220)
T cd02121          67 GIDVKGKIVIARY--GGIFRGLKVKNAQLAGAVGVIIYSDPAD  107 (220)
T ss_pred             CCCCCCeEEEEEC--CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence            5689999999999  8888899999999999999999987654

This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=93.10  E-value=1.1  Score=39.53  Aligned_cols=56  Identities=16%  Similarity=0.155  Sum_probs=39.3

Q ss_pred             cEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeec
Q 006600          547 SITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLR  603 (639)
Q Consensus       547 ~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~  603 (639)
                      .-..+++|+|.+..+.+|++++..++|+++......+++ ++|++.++.|.+.++..
T Consensus        32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~   87 (118)
T PF11614_consen   32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD   87 (118)
T ss_dssp             EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred             EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence            345678899999999999999998889999655578888 67999999999998744

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=90.04  E-value=3  Score=37.02  Aligned_cols=70  Identities=14%  Similarity=0.247  Sum_probs=49.7

Q ss_pred             CccEEEEEEEEEcCCCCeeEEEEEeC----CCCc--------------------eEEEecCeEEEcCCCcEEEEEEEEEE
Q 006600          545 KKSITVSRQVTNVSPMNSVYTARVQA----PAGT--------------------TVRVEPSTLTFNSTRKKLKFKVTFYS  600 (639)
Q Consensus       545 ~~~~~~~~tvtn~~~~~~ty~~~~~~----~~g~--------------------~v~v~p~~~~~~~~g~~~~~~v~~~~  600 (639)
                      +..++++++|+|.++...+|.+++..    ..|+                    -+++ |..+++ +++|++++++++..
T Consensus        26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~  103 (121)
T PF06030_consen   26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM  103 (121)
T ss_pred             CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence            45788999999999999999998631    1111                    1112 444777 67999999999998


Q ss_pred             eecCCCceEEEEEEEE
Q 006600          601 RLRVQGRYSFGNLFWE  616 (639)
Q Consensus       601 ~~~~~~~~~~G~i~~~  616 (639)
                      +...-.+.+-|-|.+.
T Consensus       104 P~~~f~G~ilGGi~~~  119 (121)
T PF06030_consen  104 PKKAFDGIILGGIYFS  119 (121)
T ss_pred             CCCCcCCEEEeeEEEE
Confidence            7655556677777765

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=87.77  E-value=8.6  Score=33.86  Aligned_cols=70  Identities=17%  Similarity=0.131  Sum_probs=47.7

Q ss_pred             ccEEEEEEEEEcCCCCeeEEEEEeC---CC----CceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEc
Q 006600          546 KSITVSRQVTNVSPMNSVYTARVQA---PA----GTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWED  617 (639)
Q Consensus       546 ~~~~~~~tvtn~~~~~~ty~~~~~~---~~----g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~  617 (639)
                      +..+.+++|+|.++.+..+.+.+..   ..    .-.+-++|..+.+ ++|++++++| +.....+......=+|.+..
T Consensus        14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~   90 (122)
T PF00345_consen   14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFRE   90 (122)
T ss_dssp             TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence            3457789999999988888888764   11    1257899999999 5799999999 76433234433344455543

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2

Probab=84.39  E-value=1.2  Score=41.33  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=34.4

Q ss_pred             CCCCccccccEEEEEeCCCc-----------------chHHHHHHhhhcCCceEEEEecCCC
Q 006600          262 TLNATLVRGKIVICFQSQFQ-----------------RSAATAARTVLDSGGVGLIFAKFPT  306 (639)
Q Consensus       262 ~~~~~~~~gkivl~~~~~g~-----------------~~~~~k~~~~~~~Ga~g~i~~~~~~  306 (639)
                      ++...|++||||++.+.+..                 -....|...+.+.||.|+|++....
T Consensus        42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~  103 (157)
T cd04821          42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE  103 (157)
T ss_pred             cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence            56678999999999864210                 1245699999999999999997653

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>COG1470 Predicted membrane protein [Function unknown]

Probab=83.57  E-value=9.3  Score=41.24  Aligned_cols=71  Identities=15%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             ccEEEEEEEEEcCCCCe-eEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEee-cCCCceEEEEEEEEc
Q 006600          546 KSITVSRQVTNVSPMNS-VYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRL-RVQGRYSFGNLFWED  617 (639)
Q Consensus       546 ~~~~~~~tvtn~~~~~~-ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~G~i~~~~  617 (639)
                      ...++...+.|.|+.+. .-.+++..|+|-++.|+|.++---++|+.+++++|++++. +..+.| +=+|.-+.
T Consensus       397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~ks  469 (513)
T COG1470         397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAKS  469 (513)
T ss_pred             ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEee
Confidence            46788889999998774 5668889999999999999765557899999999999874 444554 44455444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	639
3vta_A	621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		1e-105
3i6s_A	649	Crystal Structure Of The Plant Subtilisin-Like Prot		1e-79
3afg_A	539	Crystal Structure Of Pron-Tk-Sp From Thermococcus K		2e-08
1sue_A	266	Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu		5e-05
1s01_A	275	Large Increases In General Stability For Subtilisin		5e-05
1sua_A	266	Subtilisin Bpn' Length = 266		5e-05
1aqn_A	275	Subtilisin Mutant 8324 Length = 275		5e-05
1spb_S	266	Subtilisin Bpn' Prosegment (77 Residues) Complexed		5e-05
1wsd_A	269	Alkaline M-Protease Form I Crystal Strcuture Length		5e-05
1ak9_A	275	Subtilisin Mutant 8321 Length = 275		6e-05
1gns_A	263	Subtilisin Bpn' Length = 263		9e-05
1sbi_A	275	Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f,		1e-04
1mee_A	275	The Complex Between The Subtilisin From A Mesophili		1e-04
3f49_S	266	Anion-Triggered Engineered Subtilisin Subt_bacam Le		1e-04
1gnv_A	266	Calcium Independent Subtilisin Bpn' Mutant Length =		1e-04
1dui_A	266	Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr		1e-04
1suc_A	275	Calcium-Independent Subtilisin By Design Length = 2		1e-04
1c9j_A	269	Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A		1e-04
1st3_A	269	The Crystal Structure Of The Bacillus Lentus Alkali		2e-04
1ah2_A	269	Serine Protease Pb92 From Bacillus Alcalophilus, Nm		2e-04
1ndu_A	269	Bacillus Lentus Subtilisin Variant S101gV104N Lengt		2e-04
1ndq_A	269	Bacillus Lentus Subtilisin Length = 269		2e-04
1yjb_A	275	Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit		2e-04
3cnq_S	266	Prosubtilisin Substrate Complex Of Subtilisin Subt_		3e-04
2sbt_A	275	A Comparison Of The Three-Dimensional Structures Of		3e-04
2sni_E	275	Structural Comparison Of Two Serine Proteinase-Prot		3e-04
1lw6_E	281	Crystal Structure Of The Complex Of Subtilisin Bpn'		3e-04
2sic_E	275	Refined Crystal Structure Of The Complex Of Subtili		3e-04
3eif_A	936	1.9 Angstrom Crystal Structure Of The Active Form O		3e-04
1s02_A	275	Effects Of Engineered Salt Bridges On The Stability		3e-04
4dww_A	275	Crystal Structure Of Nattokinase From Bacillus Subt		3e-04
1sub_A	275	Calcium-Independent Subtilisin By Design Length = 2		4e-04
1c9n_A	269	Bacillus Lentus Substilisin Variant (Ser 87) K27rV1		4e-04
1a2q_A	275	Subtilisin Bpn' Mutant 7186 Length = 275		5e-04
1q5p_A	269	S156e/s166d Variant Of Bacillus Lentus Subtilisin L		5e-04
1iav_A	269	Structure On Native (Asn 87) Subtilisin From Bacill		5e-04
1scj_A	275	Crystal Structure Of Subtilisin-Propeptide Complex		5e-04
1c9m_A	269	Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L		6e-04
4dzt_A	276	Aqualysin I: The Crystal Structure Of A Serine Prot		7e-04
3lxu_X	1354	Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp I		9e-04

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Iteration: 1
 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/642 (37%), Positives = 330/642 (51%), Gaps = 59/642 (9%)
Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF DE     PP+W G C+    F    CNRKIIGAR Y  G     G +
Sbjct: 29  LDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDV 85
Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
           N         PRD  GHGTHT+STAAGG+V  A+                 +A YK+CW 
Sbjct: 86  NG--------PRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN 137
Query: 121 PGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVDDIISIGSFHAVAKGISVVCSA 180
             GCS              GVD+I            +VD  I+IGSFHAV +GI    SA
Sbjct: 138 -DGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVD-AIAIGSFHAVERGILTSNSA 195
Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GN GP   T  + +PW+++VAAST+DR F T + +GN Q+  G +        N++YP+V
Sbjct: 196 GNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLV 252
Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQS----QFQRSAATAARTVLDSGG 296
            G+DI     D+ ++R C   ++N  L++GKIV+C  S    +F +S   AA  ++ S  
Sbjct: 253 SGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSN- 311
Query: 297 VGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPE 356
                    T+D   S+ +P   +D     + L Y+ + R+P     F  T I    +P 
Sbjct: 312 ---------TRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPV 361
Query: 357 VAFFXXXXXXXXXXXVLKPDIAAPGVNILASW---SPVSNLEQTDHVTPNYIPQFNFKVE 413
           V  F           V+KPDI+ PGV ILA+W   +PV  + +             F + 
Sbjct: 362 VVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL----------FNII 411
Query: 414 SGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPF 473
           SGTSMSCPHI+GI   +K  +PTWSPAAIKSA++TTAS  +       A   P  +   F
Sbjct: 412 SGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN-------ARFNPQAE---F 461
Query: 474 DYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVN 533
            YG GHV+P KA+ PGLVYD   SDYV+FLC  GYN  A+  +    + C   +T  + +
Sbjct: 462 AYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWD 521
Query: 534 LNLPSITI---PELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRK 590
           LN PS  +   P    +   +R +T+V+P  S Y A + AP G T+ V P+ L+FN    
Sbjct: 522 LNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGD 581
Query: 591 KLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII 632
           +  F +T   R  ++G     +L W DG+H VR P+ + +++
Sbjct: 582 RKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITITSLV 621

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Iteration: 1
 Score =  294 bits (752), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 220/654 (33%), Positives = 324/654 (49%), Gaps = 58/654 (8%)
Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +D+GIWPES SF+D+ M EIP RW GIC+ G  FN S CNRK+IGA ++ KG  A    +
Sbjct: 31  LDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTV 90
Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
           N    +   S RD  GHGTH +S  AG   K  S                 LA+YK  + 
Sbjct: 91  N----ITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN 146
Query: 121 PGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVDDIISIGSFHAVAKGISVVCSA 180
            G  +S             GVD+I              +D ISI SF A+ KG+ V  SA
Sbjct: 147 EGTFTS-DLIAAMDQAVADGVDMI--SISYGYRFIPLYEDAISIASFGAMMKGVLVSASA 203
Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GN GP   ++ N +PW++ VA+   DR F   +T+GN   + G + +  +    +  P++
Sbjct: 204 GNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARA-FVRDSPVI 262
Query: 241 IGKDIATFDADEGSARSCESGTLNATLV--RGKIVIC-----FQSQFQ---RSAATAART 290
             K ++           C S  L + +      IVIC     F  Q +   R+   AA  
Sbjct: 263 YNKTLS----------DCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIF 312
Query: 291 VLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIG 350
           + +  GV    A FP          P + V+   G  ++ Y++ +  P    +F +T + 
Sbjct: 313 ISEDPGV-FRSATFPN---------PGVVVNKKEGKQVINYVKNSVTPTATITFQETYLD 362
Query: 351 QQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNF 410
            + +P VA             + KPDI APGV ILA++ P  N+  T  +  N +   ++
Sbjct: 363 TKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP--NVFATS-IGTNILLSTDY 419
Query: 411 KVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQA 470
            +ESGTSM+ PH +GI A+LKA HP WSP+AI+SA++TTA   D   + I  +   +K A
Sbjct: 420 ILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI-KDSDNNKAA 478
Query: 471 DPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNR--ASTTCNDKST 528
            P D G GHVDPN+A+DPGLVYD    DYV  LC++ +       + R  AS  C++ S 
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPS- 537
Query: 529 KFLVNLNLPS-ITIPELKKSITV-----SRQVTNVSPMNSVYTARVQAPAGTTVRVEPST 582
               +LN PS I +  ++ + T+      R VTNV    + Y A+++AP  +T+ V P  
Sbjct: 538 ---ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQI 594
Query: 583 LTFNSTRKKLKFKVTF-YSRLRVQGRYSFGNLFW--EDGIHVVRIPLIVRTIID 633
           L F +  +K  + +T  Y     Q R + G++ W  ++G H VR P++   II+
Sbjct: 595 LVFKNKNEKQSYTLTIRYIGDEGQSR-NVGSITWVEQNGNHSVRSPIVTSPIIE 647

>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 24/115 (20%)
Query: 373 LKPDIAAPGVNILASWSPVSNLEQ--TDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL 430
           LKP++ APG  I+A+ +  +++ Q   D+ T             GT+M+ PH++GI ALL
Sbjct: 323 LKPEVVAPGNWIIAARASGTSMGQPINDYYT----------AAPGTAMATPHVAGIAALL 372
Query: 431 KAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKA 485
              HP+W+P  +K+A++ TA +             P + AD   YG G V+  KA
Sbjct: 373 LQAHPSWTPDKVKTALIETADIV-----------KPDEIAD-IAYGAGRVNAYKA 415

>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGTSM+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252

>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I+++                 +P   +  +SGT+M+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSIVST-----------------LPGNKYGAKSGTAMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252

>pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I+++                 +P   +  +SGT+M+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSIVST-----------------LPGNKYGAKSGTAMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252

>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GTSM+ PH++G+ AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGVAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I   WS               +P   +  +SGT M+ PH++G  AL+ + HP
Sbjct: 185 DVMAPGVSI---WS--------------TLPGNKYGAKSGTXMASPHVAGAAALILSKHP 227
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 228 NWTNTQVRSSLENTTTKLGDSF 249

>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   SGTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIXST-----------------LPGNKYGAYSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGGTYGAYNGTSMATPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIVTTAS 451
           TW+ A ++  + +TA+
Sbjct: 240 TWTNAQVRDRLESTAT 255

>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 33/106 (31%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   SGTSM+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGGKYGALSGTSMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVD 481
            W+   ++S++  TA+                K  D F YG G ++
Sbjct: 231 NWTNTQVRSSLENTAT----------------KLGDSFYYGKGLIN 260

>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGT M+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGNKYGAKSGTXMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252

>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 17/74 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGTSM+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIVTT 449
            W+   ++S++  T
Sbjct: 231 NWTNTQVRSSLENT 244

>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +  +SGT M+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAKSGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GTSM+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GTSM+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GTSM+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GTSM+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GTSM+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   SGTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIXST-----------------LPGNKYGAYSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTYLGDSF 261

>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 33/106 (31%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   SGT+M+ PH++G  AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGGKYGALSGTAMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVD 481
            W+   ++S++  TA+                K  D F YG G ++
Sbjct: 231 NWTNTQVRSSLENTAT----------------KLGDSFYYGKGLIN 260

>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLQNTTTKLGDSF 261

>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLQNTTTKLGDSF 261

>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 47/231 (20%)
Query: 268 VRGKIVICFQSQ--FQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYI-QVDFA- 323
           V+GKI +  +    F+   A A +    +G VG++   +  +D  F   +P + Q+  A 
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKK----AGAVGVLI--YDNQDKGFPIELPNVDQMPAAF 341
Query: 324 IGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVN 383
           I       ++ N    + F+ T  V+      +++ F            +KPDIAAPG +
Sbjct: 342 ISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTADGN--IKPDIAAPGQD 399
Query: 384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSP---- 439
           IL+S                 +    +   SGTSMS P ++GI+ LL+  + T  P    
Sbjct: 400 ILSS-----------------VANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTP 442
Query: 440 -----AAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKA 485
                 A K  + +  +L DE  ++     +P +Q      G G VD  KA
Sbjct: 443 SERLDLAKKVLMSSATALYDEDEKAYF---SPRQQ------GAGAVDAKKA 484

>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GTSM+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GT M+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGGTYGAYNGTXMATPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIVTTAS 451
           TW+ A ++  + +TA+
Sbjct: 240 TWTNAQVRDRLESTAT 255

>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   SGT M+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYSGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GT M+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   SGT M+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYSGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
            W+   ++S++  TT  L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261

>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GT M+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GT M+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APGV+I ++                 +P   +   +GT M+ PH++G  AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGGTYGAYNGTCMATPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIVTTAS 451
           TW+ A ++  + +TA+
Sbjct: 240 TWTNAQVRDRLESTAT 255

>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           DI APGVN+ +++                 P   +   +GT M+ PH++G  AL+K  +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
           +WS   I++ +  TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249

>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APG +I ++W               Y      +  +GTSM+ PH++G+ AL    +P
Sbjct: 196 DLFAPGASIPSAW---------------YTSDTATQTLNGTSMATPHVAGVAALYLEQNP 240
Query: 436 TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHK 468
           + +PA++ SAI+  A+       S +  G+P++
Sbjct: 241 SATPASVASAILNGATTGR---LSGIGSGSPNR 270

>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii) Length = 1354

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 405 IPQFNF---KVESGTSMSCPHISGIVAL----LKAIHPTWSPAAIKSAIVTTASLKDEYA 457
           +PQF     ++ +GTS + PH++G VAL    LK  +  +SP +IK AI  TA+ K  Y 
Sbjct: 447 VPQFTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT-KLGY- 504
Query: 458 QSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYN 509
                        DPF  G G ++  KA +    +     + +RF   +G N
Sbjct: 505 ------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	639
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	0.0
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	0.0
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-146
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	5e-26
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	4e-24
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	6e-19
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	3e-22
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	2e-19
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	3e-20
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	8e-18
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	6e-20
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	4e-19
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	6e-20
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	2e-19
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	3e-19
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	6e-19
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	1e-18
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	7e-15
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	1e-18
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	1e-15
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	1e-17
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	2e-14
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	3e-17
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	7e-15
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	6e-17
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	7e-17
3t41_A	471	Epidermin leader peptide processing serine protea;	8e-17
3t41_A	471	Epidermin leader peptide processing serine protea;	1e-15
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	9e-17
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	1e-13
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	1e-16
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	5e-14
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	2e-16
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	2e-15
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	3e-16
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	1e-13
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	2e-14
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	4e-14
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	3e-14
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	9e-12
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	4e-14
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	5e-11
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	7e-14
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	2e-11
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	3e-13
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	3e-10
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	7e-13
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	8e-10
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	1e-11
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	8e-11
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	4e-11
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	2e-10
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	2e-07
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	2e-04
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	7e-07
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	2e-04
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	1e-04
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	3e-04

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621

 Score =  640 bits (1652), Expect = 0.0
 Identities = 256/635 (40%), Positives = 352/635 (55%), Gaps = 45/635 (7%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +DTGIWPES SF DE     PP+W G C+    F    CNRKIIGAR Y  G     G  
Sbjct: 29  LDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPG-- 83

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
                 +   PRD  GHGTHT+STAAGG+V  A+  GL  G ARGG PLA +A YK+CW 
Sbjct: 84  ------DVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW- 136

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
             GCS  D+LAA+DDA  DGVD+ISLS+G + P   Y  D I+IGSFHAV +GI    SA
Sbjct: 137 NDGCSDTDILAAYDDAIADGVDIISLSVGGANP-RHYFVDAIAIGSFHAVERGILTSNSA 195

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GN GP   T  + +PW+++VAAST+DR F T + +GN Q+  G +        N++YP+V
Sbjct: 196 GNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLV 252

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G+DI     D+ ++R C   ++N  L++GKIV+C  S        +        G   +
Sbjct: 253 SGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSL------DGAAGV 306

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
                T+D   S+ +P   +D     + L Y+ + R+P      + T++    +P V  F
Sbjct: 307 LMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSF 365

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSC 420
           SSRGP+  +  V+KPDI+ PGV ILA+W  V+ +               F + SGTSMSC
Sbjct: 366 SSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRR-------NTLFNIISGTSMSC 418

Query: 421 PHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV 480
           PHI+GI   +K  +PTWSPAAIKSA++TTAS  +          A       F YG GHV
Sbjct: 419 PHITGIATYVKTYNPTWSPAAIKSALMTTASPMN----------ARFNPQAEFAYGSGHV 468

Query: 481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSIT 540
           +P KA+ PGLVYD   SDYV+FLC  GYN  A+  +    + C   +T  + +LN PS  
Sbjct: 469 NPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG 528

Query: 541 I---PELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVT 597
           +   P    +   +R +T+V+P  S Y A + AP G T+ V P+ L+FN    +  F +T
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588

Query: 598 FYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII 632
                 ++G     +L W DG+H VR P+ + +++
Sbjct: 589 VRG--SIKGFVVSASLVWSDGVHYVRSPITITSLV 621

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649

 Score =  628 bits (1621), Expect = 0.0
 Identities = 230/642 (35%), Positives = 334/642 (52%), Gaps = 34/642 (5%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +D+GIWPES SF+D+ M EIP RW GIC+ G  FN S CNRK+IGA ++ KG  A    +
Sbjct: 31  LDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTV 90

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N        S RD  GHGTH +S  AG   K  S  G A G ARG AP A LA+YK  + 
Sbjct: 91  NI----TMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF- 145

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
             G  ++DL+AA D A  DGVD+IS+S G         +D ISI SF A+ KG+ V  SA
Sbjct: 146 NEGTFTSDLIAAMDQAVADGVDMISISYGYRFI--PLYEDAISIASFGAMMKGVLVSASA 203

Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
           GN GP   ++ N +PW++ VA+   DR F   +T+GN   + G + +  +    +  P++
Sbjct: 204 GNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPAR-AFVRDSPVI 262

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
             K +        S  S E            IVIC  +      +   R +  +     I
Sbjct: 263 YNKTL--------SDCSSEELLSQVENPENTIVICDDNG---DFSDQMRIITRARLKAAI 311

Query: 301 FA-KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAF 359
           F  + P      +F  P + V+   G  ++ Y++ +  P    +F +T +  + +P VA 
Sbjct: 312 FISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAA 371

Query: 360 FSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMS 419
            S+RGPS     + KPDI APGV ILA++ P            N +   ++ +ESGTSM+
Sbjct: 372 SSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIG---TNILLSTDYILESGTSMA 428

Query: 420 CPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGH 479
            PH +GI A+LKA HP WSP+AI+SA++TTA   D   + I  +   +K A P D G GH
Sbjct: 429 APHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI-KDSDNNKAATPLDMGAGH 487

Query: 480 VDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPS- 538
           VDPN+A+DPGLVYD    DYV  LC++ +       + R+S + N  +     +LN PS 
Sbjct: 488 VDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSA--DLNYPSF 545

Query: 539 ITIPELKKSI-----TVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLK 593
           I +  ++ +         R VTNV    + Y A+++AP  +T+ V P  L F +  +K  
Sbjct: 546 IALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQS 605

Query: 594 FKVTFYSRLRVQGRYSFGNLFW--EDGIHVVRIPLIVRTIID 633
           + +T           + G++ W  ++G H VR P++   II+
Sbjct: 606 YTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPIIE 647

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score =  447 bits (1150), Expect = e-146
 Identities = 106/611 (17%), Positives = 193/611 (31%), Gaps = 65/611 (10%)

Query: 2   DTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSN----CNRKIIGARWYVKGYEAEF 57
           D G     E+++  +  +   +     ++ +  +        N K+     Y K      
Sbjct: 25  DAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG---- 80

Query: 58  GKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKI 117
                              HGTH S   +G    +A           G  P A L + ++
Sbjct: 81  ------------KTAVDQEHGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLLMRV 124

Query: 118 CWAPG-GCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISV 176
               G    + +   A  DA   G  VI++S G++      + D       +A +KG+S+
Sbjct: 125 EIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSI 184

Query: 177 VCSAGNSGPYPQTV---INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDL 233
           V SAGN   +       +   P    V       +  T  +   ++ +         +  
Sbjct: 185 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQ 244

Query: 234 NKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLD 293
           +K  P++         A + +  +  +   +   V+GKI +  +                
Sbjct: 245 DKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFK--DKIAKAKK 302

Query: 294 SGGVGLIFAKFPTKDVHFSFG----VPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVI 349
           +G VG++      K           +P   +    G  L    +      + F+ T  V+
Sbjct: 303 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKT----ITFNATPKVL 358

Query: 350 GQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFN 409
                 +++ FSS G ++     +KPDIAAPG +IL+S                      
Sbjct: 359 PTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSV-----------------ANNK 399

Query: 410 FKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQ 469
           +   SGTSMS P ++GI+ LL+  + T  P    S  +  A      + + + +      
Sbjct: 400 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY 459

Query: 470 ADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTK 529
             P   G G VD  KA    +       D       +   +    +    +   ++KS K
Sbjct: 460 FSPRQQGAGAVDAKKASAATMYVT--DKDNTSSKVHLNNVSDKFEV----TVNVHNKSDK 513

Query: 530 FLVNLNLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTR 589
               L   +    +       +     V    S     + A +   V V      F+   
Sbjct: 514 P-QELYYQATVQTDKVDGKHFALA-PKVLYETSWQKITIPANSSKQVTVPIDASRFSKDL 571

Query: 590 KKLKFKVTFYS 600
                   F  
Sbjct: 572 LAQMKNGYFLE 582

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441

 Score =  110 bits (277), Expect = 5e-26
 Identities = 79/432 (18%), Positives = 152/432 (35%), Gaps = 77/432 (17%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPL--AWLAIYKICWAPGGCSSA 127
            P +   HGTH + T A         +   +G+  G  P   A + I K+    G   S+
Sbjct: 58  QPGNNNAHGTHVAGTIAA--------IANNEGVV-GVMPNQNANIHIVKVFNEAGWGYSS 108

Query: 128 DLLAAFDDATFD-GVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP- 185
            L+AA D      G +V+++SLG S   +T   + ++         G+ ++ +AGN+G  
Sbjct: 109 SLVAAIDTCVNSGGANVVTMSLGGSGS-TTTERNALN----THYNNGVLLIAAAGNAGDS 163

Query: 186 ---YPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAF--YNGKEDLNKFYPIV 240
              YP     +   V++VAA   +                   F  Y  + ++    P  
Sbjct: 164 SYSYP----ASYDSVMSVAAVDSNLDHAA--------------FSQYTDQVEI--SGP-- 201

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300
            G+ I +         +    T+         V+          + A   +  S    L 
Sbjct: 202 -GEAILSTVTVGEGRLA--DITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALA 258

Query: 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF 360
                            I +   +G    +Y E N     K +  K +        + + 
Sbjct: 259 ECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGI--------IVYS 310

Query: 361 SSRGPSSLSPSVLKPD----IAAPGVNILASWSPVSNL-EQTDHVTPNYIPQFNFKVESG 415
           +S  P   +P ++  +    + +  V+     +  + L + T           +++  +G
Sbjct: 311 NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQ---GNQDYEYYNG 367

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TSM+ PH+SG+  L+ + HP  S + +++A+  T       A  +   G  ++       
Sbjct: 368 TSMATPHVSGVATLVWSYHPECSASQVRAALNAT-------ADDLSVAGRDNQ------T 414

Query: 476 GGGHVDPNKAMD 487
           G G ++   A  
Sbjct: 415 GYGMINAVAAKA 426

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354

 Score =  107 bits (267), Expect = 4e-24
 Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 40/237 (16%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            V  ++SR P           + APG  I +                  + +      +G
Sbjct: 418 NVYTWTSRDPCIDG--GQGVTVCAPGGAIASVP-------------QFTMSKSQLM--NG 460

Query: 416 TSMSCPHISGIVAL----LKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQAD 471
           TSM+ PH++G VAL    LK  +  +SP +IK AI  TA+                   D
Sbjct: 461 TSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT--------------KLGYVD 506

Query: 472 PFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFL 531
           PF  G G ++  KA +    +     + +RF   +G NN+   +  R     N       
Sbjct: 507 PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVG-NNADKGIHLRQGVQRNSIDYNVY 565

Query: 532 VNLNLPSITIPELKKSITVSRQVTNVSPMNSV----YTARVQAPAGTTVRVEPSTLT 584
           +     +    + K     + ++  ++    V    +           VRV+P+ L 
Sbjct: 566 IEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354

 Score = 90.7 bits (224), Expect = 6e-19
 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 21/145 (14%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGC--SSAD 128
              +  HGTH SS A+G           +     G AP A +    I     G   +   
Sbjct: 266 VGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIGDGRLGSMETGTA 316

Query: 129 LLAAFDDA-----TFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNS 183
           L+ A             +DVI++S G     S     I  + +      G+  V SAGN 
Sbjct: 317 LVRAMTKVMELCRDGRRIDVINMSYGEHANWS-NSGRIGELMNEVVNKYGVVWVASAGNH 375

Query: 184 GPYPQTVIN----TAPWVITVAAST 204
           GP   TV      + P +I V A  
Sbjct: 376 GPALCTVGTPPDISQPSLIGVGAYV 400

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 99.5 bits (248), Expect = 3e-22
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 22/145 (15%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            +  FSSRGP++   + LKP++ APG  I+A+ +  +++ Q  +               G
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAA--------PG 357

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           T+M+ PH++GI ALL   HP+W+P  +K+A++ T            A+     +     Y
Sbjct: 358 TAMATPHVAGIAALLLQAHPSWTPDKVKTALIET------------ADIVKPDEIADIAY 405

Query: 476 GGGHVDPNKAMDPGLVYDMEVSDYV 500
           G G V+  KA        +  + YV
Sbjct: 406 GAGRVNAYKAAYYDNYAKLTFTGYV 430

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           +P D  GHGTH +S AAG           + G  +G AP A L   K+    G  S +D+
Sbjct: 173 TPYDDNGHGTHVASIAAGTG-------AASNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225

Query: 130 LA----AFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP 185
           +     A  +    G+ VI+LSLGS    S+   D +S    +A   G+ VV +AGNSGP
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGS--SQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGP 283

Query: 186 YPQTVIN--TAPWVITVAASTID 206
              TV +   A  VITV A    
Sbjct: 284 NKYTVGSPAAASKVITVGAVDKY 306

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 350 GQQISPEVAFFSSRGPSS----LSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYI 405
            Q  +  VA +SSRG  S            +I+APG ++ ++W                 
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW----------------- 238

Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGA 465
               +   SGTSM+ PH+SG+ A + A +P+ S   ++S +   A   D       A G 
Sbjct: 239 YNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG- 297

Query: 466 PHKQADPFDYGGGHVD 481
                D +  G G   
Sbjct: 298 -----DDYASGFGFAR 308

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score = 83.5 bits (207), Expect = 8e-18
 Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           S  D  GHGTH + TA       +   G+      G AP A L  YK+    G   S D+
Sbjct: 64  SCTDRNGHGTHVAGTALA--DGGSDQAGIY-----GVAPDADLWAYKVLLDSGSGYSDDI 116

Query: 130 LAAFD-----DATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
            AA               +IS+SLGSS   ++ +   ++    +A +KG+ +V +AGNSG
Sbjct: 117 AAAIRHAADQATATGTKTIISMSLGSSAN-NSLISSAVN----YAYSKGVLIVAAAGNSG 171

Query: 185 PYPQTVIN--TAPWVITVAASTIDRAFPTA 212
               T+      P  I VAA    +   T 
Sbjct: 172 YSQGTIGYPGALPNAIAVAALENVQQNGTY 201

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score = 89.5 bits (223), Expect = 6e-20
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 41/132 (31%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
           + A FSS GP        + D+ APGV+I ++                  P   +   +G
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTL-----------------PGNKYGAYNG 219

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TSM+ PH++G  AL+ + HP W+   ++S++  T +                K  D F Y
Sbjct: 220 TSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT----------------KLGDSFYY 263

Query: 476 GGGHVDPNKAMD 487
           G G ++   A  
Sbjct: 264 GKGLINVQAAAQ 275

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score = 86.8 bits (216), Expect = 4e-19
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 18/143 (12%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
             +D   HGTH + T A            + G+  G AP A L   K+  A G    + +
Sbjct: 57  PFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVLGADGSGQYSWI 107

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT 189
           +   + A  + +DVI++SLG     S  +   +      AVA G+ VV +AGN G    +
Sbjct: 108 INGIEWAIANNMDVINMSLGGPSG-SAALKAAVD----KAVASGVVVVAAAGNEGTSGSS 162

Query: 190 VINT----APWVITVAASTIDRA 208
                    P VI V A      
Sbjct: 163 STVGYPGKYPSVIAVGAVDSSNQ 185

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score = 89.1 bits (222), Expect = 6e-20
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
              D  GHGTH + T A         L    G+  G AP   L   K+  + G  S + +
Sbjct: 56  YNTDGNGHGTHVAGTVAA--------LDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGI 106

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT 189
           ++  + AT +G+DVI++SLG +   ST +   +     +A A+G+ VV +AGNSG    T
Sbjct: 107 VSGIEWATTNGMDVINMSLGGASG-STAMKQAVD----NAYARGVVVVAAAGNSGNSGST 161

Query: 190 VINT----APWVITVAASTIDRA 208
                      VI V A   +  
Sbjct: 162 NTIGYPAKYDSVIAVGAVDSNSN 184

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 41/130 (31%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             A FSS G         + ++ APG  + +++                 P   +   +G
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTY-----------------PTNTYATLNG 218

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TSM+ PH++G  AL+ + HP  S + +++ + +TA+                     F Y
Sbjct: 219 TSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT----------------YLGSSFYY 262

Query: 476 GGGHVDPNKA 485
           G G ++   A
Sbjct: 263 GKGLINVEAA 272

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           S +D  GHGTH + T A         L  + G+  G AP A L   K+  A G  S + +
Sbjct: 55  STQDGNGHGTHVAGTIAA--------LNNSIGVL-GVAPSAELYAVKVLGASGSGSVSSI 105

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP---- 185
               + A  +G+ V +LSLGS  P S  ++  ++     A ++G+ VV ++GNSG     
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSP-SATLEQAVN----SATSRGVLVVAASGNSGAGSIS 160

Query: 186 YPQTVINTAPWVITVAASTIDRA 208
           YP          + V A+  +  
Sbjct: 161 YP----ARYANAMAVGATDQNNN 179

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score = 86.1 bits (214), Expect = 6e-19
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 41/130 (31%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             A FS  G           DI APGVN+ +++                 P   +   +G
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTY-----------------PGSTYASLNG 213

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TSM+ PH++G  AL+K  +P+WS   I++ +  TA+                       Y
Sbjct: 214 TSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT----------------SLGSTNLY 257

Query: 476 GGGHVDPNKA 485
           G G V+   A
Sbjct: 258 GSGLVNAEAA 267

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 21/143 (14%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           +P++  GHGTH +  AA   V + S      G+A G AP A +   ++    G  +   +
Sbjct: 64  TPQNGNGHGTHCAGIAAA--VTNNS-----TGIA-GTAPKASILAVRVLDNSGSGTWTAV 115

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP---- 185
                 A   G  VISLSLG ++  ++ +   ++    +A  KG  VV +AGN+G     
Sbjct: 116 ANGITYAADQGAKVISLSLGGTVG-NSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPN 170

Query: 186 YPQTVINTAPWVITVAASTIDRA 208
           YP          I VA++  +  
Sbjct: 171 YPA----YYSNAIAVASTDQNDN 189

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score = 74.5 bits (184), Expect = 7e-15
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 42/132 (31%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             + FS+ G           D+AAPG +I +++                 P   +   SG
Sbjct: 189 NKSSFSTYGSW--------VDVAAPGSSIYSTY-----------------PTSTYASLSG 223

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TSM+ PH++G+  LL +   +   + I++AI  TA                        +
Sbjct: 224 TSMATPHVAGVAGLLASQGRS--ASNIRAAIENTAD---------------KISGTGTYW 266

Query: 476 GGGHVDPNKAMD 487
             G V+  KA+ 
Sbjct: 267 AKGRVNAYKAVQ 278

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score = 85.3 bits (212), Expect = 1e-18
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
            P D   HGTH +  AA     + +      G+A G AP   +   +     G  + +D+
Sbjct: 65  DPMDLNNHGTHVAGIAAA--ETNNA-----TGIA-GMAPNTRILAVRALDRNGSGTLSDI 116

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP---- 185
             A   A   G +VI+LSLG     +T +++ ++    +A  KG  VV +AGN+G     
Sbjct: 117 ADAIIYAADSGAEVINLSLGCDCH-TTTLENAVN----YAWNKGSVVVAAAGNNGSSTTF 171

Query: 186 YPQTVINTAPWVITVAASTIDRA 208
            P     +   VI V A      
Sbjct: 172 EPA----SYENVIAVGAVDQYDR 190

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 42/132 (31%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            +A FS+ G           D+ APGV+I+++                      +   SG
Sbjct: 190 RLASFSNYGTW--------VDVVAPGVDIVSTI-----------------TGNRYAYMSG 224

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TSM+ PH++G+ ALL +         I+ AI  TA                        +
Sbjct: 225 TSMASPHVAGLAALLASQGRN--NIEIRQAIEQTAD---------------KISGTGTYF 267

Query: 476 GGGHVDPNKAMD 487
             G ++   A+ 
Sbjct: 268 KYGRINSYNAVT 279

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score = 85.9 bits (212), Expect = 1e-17
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 22/135 (16%)

Query: 354 SPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFN-FKV 412
           +  VA FSSR             + APGV IL++     ++    H           +  
Sbjct: 325 TFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376

Query: 413 ESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADP 472
             GTSM+ PH++G+VA+L    P   P  I+  +  T            A        D 
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENT------------AFDFNGNGWDH 424

Query: 473 FDYGGGHVDPNKAMD 487
              G G V  + A+ 
Sbjct: 425 D-TGYGLVKLDAALQ 438

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score = 75.5 bits (185), Expect = 2e-14
 Identities = 35/147 (23%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKI------CWAPGGC 124
                  GTH + T A             +G+  G AP A +    I          G  
Sbjct: 194 SSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGGNGYV 244

Query: 125 SSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
               + A    AT  G  V++ S G     S  + +       +A+  G+ +V SAGN+ 
Sbjct: 245 GDDYVAAGIIWATDHGAKVMNHSWGGWGY-SYTMKEAFD----YAMEHGVVMVVSAGNNT 299

Query: 185 P-----YPQTVINTAPWVITVAASTID 206
                 YP       P VI VAA    
Sbjct: 300 SDSHHQYPA----GYPGVIQVAALDYY 322

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 25/150 (16%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
           +  D  GHGTH + T A              G+  G AP A L I K     G      +
Sbjct: 79  NFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKALSGDGSGEMGWI 129

Query: 130 LAAFDDAT------FDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNS 183
             A   A        + + +I++SLG     S  + D +     +AV+  +SVVC+AGN 
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPTD-SEELHDAVK----YAVSNNVSVVCAAGNE 184

Query: 184 GPYPQTVINT-----APWVITVAASTIDRA 208
           G   +             VI V A   D  
Sbjct: 185 GDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 30/100 (30%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            ++ F++             DI APGV I +++                     +   SG
Sbjct: 214 RLSDFTNTNEE--------IDIVAPGVGIKSTY-----------------LDSGYAELSG 248

Query: 416 TSMSCPHISGIVALLKAIHP-----TWSPAAIKSAIVTTA 450
           T+M+ PH++G +AL+  +       + S   I + +V  A
Sbjct: 249 TAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA 288

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 35/222 (15%), Positives = 59/222 (26%), Gaps = 43/222 (19%)

Query: 1   MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
           +D         F+   + ++ P W+    E          + I      +KG E E    
Sbjct: 56  IDGDPDYTLSCFEGAEVSKVFPYWHEP-AEPITPEDYAAFQSIRD--QGLKGKEKEEALE 112

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAG----GMVKDASFLGLAQGLARGGAPLAWLAIYK 116
                 +         H  H +ST  G     +               G AP   +    
Sbjct: 113 AVIPDTK--DRIVLNDHACHVTSTIVGQEHSPVF--------------GIAPNCRVINMP 156

Query: 117 ICWAPGG-----CSSADLLAAFDDATFDGVDVISLSLG---SSLPLSTYVDDIISIGSFH 168
                 G      S  +L  A D A   G ++I  +      +      +   I      
Sbjct: 157 QDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK----K 212

Query: 169 AVAKGISVVCSAGNSGP----YPQTVINTAPWVITVAASTID 206
                + +V   GN+       P       P  + V A+ +D
Sbjct: 213 CQDNNVLIVSPTGNNSNESWCLP----AVLPGTLAVGAAKVD 250

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score = 81.8 bits (202), Expect = 7e-17
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 36/136 (26%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
               FS+ G ++      K  I APG  IL +  P +                     +G
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQ-PCTEEPVR---------------LTG 290

Query: 416 TSMSCPHISGIVALLKAIH----PTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQAD 471
           TSM+ P ++GI ALL ++           A+++A++ TA   D           P    +
Sbjct: 291 TSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD-----------PEVVEE 339

Query: 472 PFDYGGGHVDPNKAMD 487
           P     G V+   AM 
Sbjct: 340 PERCLRGFVNIPGAMK 355

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 82.6 bits (204), Expect = 8e-17
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNY-----IPQFNF 410
            ++ FS+ G +         DIAAPG +         +    +                +
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400

Query: 411 KVESGTSMSCPHISGIVALLKA-IHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQ 469
             ++GT+++ P +SG +AL+    H    P      +                       
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHG--------------TSKNN 446

Query: 470 ADPFDYGGGHVDPNKAMD 487
                YG G +D  KA++
Sbjct: 447 KPFSRYGHGELDVYKALN 464

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 32/168 (19%), Positives = 48/168 (28%), Gaps = 46/168 (27%)

Query: 70  SPRDAVGHGTHTSSTAA--GGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSA 127
              D  GHGT  S   +  G ++              G AP     +Y++          
Sbjct: 194 DVNDRKGHGTMVSGQTSANGKLI--------------GVAPNNKFTMYRVF-GSKKTELL 238

Query: 128 DLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSF-----------HAVAKGISV 176
            +  A   A  DG  VI++S+GS + L                        +A  K   V
Sbjct: 239 WVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIV 298

Query: 177 VCSAGNSGPYPQTVINTA------------------PWVITVAASTID 206
           V +AGN G                              V+TV ++   
Sbjct: 299 VAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK 346

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score = 81.3 bits (201), Expect = 9e-17
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 38/132 (28%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
                S  G + +       DIAAPG NI                     P       SG
Sbjct: 235 GGITGSRFGNNWV-------DIAAPGQNITFLR-----------------PDAKTGTGSG 270

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TS +   +SG++A + + +P  +   +K  ++ +A                +        
Sbjct: 271 TSEATAIVSGVLAAMTSCNPRATATELKRTLLESAD--------------KYPSLVDKVT 316

Query: 476 GGGHVDPNKAMD 487
            G  ++  KA+ 
Sbjct: 317 EGRVLNAEKAIS 328

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 38/170 (22%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSA-- 127
                  HGT  +S  A          G+      G  P A ++  ++       S    
Sbjct: 82  KSEALYIHGTAMASLIASR-------YGIY-----GVYPHALISSRRVIPDGVQDSWIRA 129

Query: 128 -DLLAAFDDATFDGVDVISLSLGSS--LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
            + + +          +I++S G       S + + +              +V + GN G
Sbjct: 130 IESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGNDG 185

Query: 185 P-----------YP------QTVINTAPWVITVAASTIDRAFPTAITMGN 217
                       +P       +V      VI VAA    R   T +  G 
Sbjct: 186 ADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGG 235

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 43/175 (24%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 49  YVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAG--------GMVKDASFLGLAQ 100
                    GK+++  R       D  GHGTH   T A         G+        +  
Sbjct: 51  IAWCVSTLRGKVSTKLR----DCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRV 106

Query: 101 GLARGGAPLAWLA---IYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTY 157
             ARG    + +A      I    G            D   D  +VIS+SLG      +Y
Sbjct: 107 LDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-DSY 165

Query: 158 VDDIISIGSFHAVAKGISVVCSAGNSGP----YPQTVINTAPWVITVAASTIDRA 208
           + D+I      A   GI +V ++GN G     YP       P VI V A   +  
Sbjct: 166 LYDMII----QAYNAGIVIVAASGNEGAPSPSYP----AAYPEVIAVGAIDSNDN 212

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 53/145 (36%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            +A FS+R P          +++APGV+IL+++                 P  +++   G
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTY-----------------PDDSYETLMG 244

Query: 416 TSMSCPHISGIVALLKAIH-------------PTWSPAAIKSAIVTTASLKDEYAQSIVA 462
           T+M+ PH+SG+VAL++A +                S   ++  +  T       A  +  
Sbjct: 245 TAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT-------ADDLGP 297

Query: 463 EGAPHKQADPFDYGGGHVDPNKAMD 487
            G         DYG G V    A+ 
Sbjct: 298 TGWDA------DYGYGVVRAALAVQ 316

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 80.8 bits (199), Expect = 2e-16
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 15/137 (10%)

Query: 357 VAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGT 416
           VA FSSRGP+      +KPD+ APG  IL++ S ++          +      +    GT
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSK-----YAYMGGT 254

Query: 417 SMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYG 476
           SM+ P ++G VA L+           K +++  A +    A  I             + G
Sbjct: 255 SMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAG--AADIGLGY------PNGNQG 306

Query: 477 GGHVDPNKAMDPGLVYD 493
            G V  +K+++   V +
Sbjct: 307 WGRVTLDKSLNVAYVNE 323

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 78.5 bits (193), Expect = 2e-15
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS--A 127
           +  D  GHGTH + +  G                +G AP A L    I  + GG     +
Sbjct: 61  NANDTNGHGTHVAGSVLG-----------NGSTNKGMAPQANLVFQSIMDSGGGLGGLPS 109

Query: 128 DLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP 187
           +L   F  A   G  + + S G+++    Y  D  ++  +      ++++ +AGN GP  
Sbjct: 110 NLQTLFSQAYSAGARIHTNSWGAAVN-GAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNG 167

Query: 188 QTVIN--TAPWVITVAASTIDRAFPTAITMGNNQ 219
            T+    TA   ITV A+   R    +     N 
Sbjct: 168 GTISAPGTAKNAITVGATENLRPSFGSYADNINH 201

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 43/175 (24%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 49  YVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAG--------GMVKDASFLGLAQ 100
                    GK+++  R       D  GHGTH   T A         G+        +  
Sbjct: 126 IAWCVSTLRGKVSTKLR----DCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRV 181

Query: 101 GLARGGAPLAWLA---IYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTY 157
             ARG    + +A      I    G            D   D  +VIS+SLG      +Y
Sbjct: 182 LDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-DSY 240

Query: 158 VDDIISIGSFHAVAKGISVVCSAGNSGP----YPQTVINTAPWVITVAASTIDRA 208
           + D+I      A   GI +V ++GN G     YP       P VI V A   +  
Sbjct: 241 LYDMII----QAYNAGIVIVAASGNEGAPSPSYP----AAYPEVIAVGAIDSNDN 287

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 31/134 (23%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
            +A FS+R P          +++APGV+IL+++                 P  +++   G
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTY-----------------PDDSYETLMG 319

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFD- 474
           T+M+ PH+SG+VAL++A +       +         +     + I+   A       +D 
Sbjct: 320 TAMATPHVSGVVALIQAAYYQKYGKILPVGT--FDDISKNTVRGILHITADDLGPTGWDA 377

Query: 475 -YGGGHVDPNKAMD 487
            YG G V    A+ 
Sbjct: 378 DYGYGVVRAALAVQ 391

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 36/136 (26%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             A FS+ G           D+AAPG +IL++    +    +D           +   +G
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSD----------AYSFMAG 274

Query: 416 TSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQAD 471
           TSM+ PH+SG+ AL+ +    ++   +PA +K  +V+T S              P     
Sbjct: 275 TSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS--------------PFNGRL 320

Query: 472 PFDYGGGHVDPNKAMD 487
               G G VD   A++
Sbjct: 321 DRALGSGIVDAEAAVN 336

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 30/153 (19%)

Query: 70  SPRDAVGHGTHTSSTAAG---------GMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
              D+  HG+H + T A          G+   A  + + + L R G   +      + WA
Sbjct: 97  ERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPV-RALGRCGGYDSD-ISDGLYWA 154

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
                 A    A      +   VI++SLGS    S     +I      A   G  VV +A
Sbjct: 155 ------AGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLGALVVVAA 204

Query: 181 GNSGP-----YPQTVINTAPWVITVAASTIDRA 208
           GN        +P     +   V++V A+T    
Sbjct: 205 GNENQNASNTWP----TSCNNVLSVGATTSRGI 233

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 23/96 (23%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             + FS+ G           DI APG +I +SW        ++  T            SG
Sbjct: 186 SRSSFSNYGTCL--------DIYAPGSSITSSWY------TSNSAT---------NTISG 222

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TSM+ PH++G+ AL    +P  SPA + + + T A+
Sbjct: 223 TSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRAT 258

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278

 Score = 64.9 bits (159), Expect = 9e-12
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
              D  GHGTH + T  G   G+ K+ + +G+                 ++    G  S+
Sbjct: 65  DATDCNGHGTHVAGTIGGSTYGVAKNVNVVGV-----------------RVLNCSGSGSN 107

Query: 127 ADLLAAFDDATFDGV--DVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
           + ++A  +    +     V ++SLG     S   DD ++     AVA GI+ V +AGN  
Sbjct: 108 SGVIAGINWVKNNASGPAVANMSLGG--GASQATDDAVN----AAVAAGITFVVAAGNDN 161

Query: 185 PYPQTVINT----APWVITVAASTID 206
                  N     A   ITV ++T +
Sbjct: 162 ---SNACNYSPARAADAITVGSTTSN 184

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 23/96 (23%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             A FS+ G           D+ APG +I ++W        +D  T         +  +G
Sbjct: 184 ARASFSNYGSCV--------DLFAPGASIPSAWY------TSDTAT---------QTLNG 220

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TSM+ PH++G+ AL    +P+ +PA++ SAI+  A+
Sbjct: 221 TSMATPHVAGVAALYLEQNPSATPASVASAILNGAT 256

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 63.0 bits (154), Expect = 5e-11
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 35/146 (23%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
           + +D  GHGTH + T  G   G+ K  +   +                 ++    G  S+
Sbjct: 63  NGQDCNGHGTHVAGTIGGVTYGVAKAVNLYAV-----------------RVLDCNGSGST 105

Query: 127 ADLLAAFDDATFDGVD--VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
           + ++A  D  T +     V ++SLG    +ST +D+ +     +++A G+    +AGN  
Sbjct: 106 SGVIAGVDWVTRNHRRPAVANMSLGG--GVSTALDNAVK----NSIAAGVVYAVAAGNDN 159

Query: 185 PYPQTVINT----APWVITVAASTID 206
                  N         +TV A+T  
Sbjct: 160 ---ANACNYSPARVAEALTVGATTSS 182

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 25/96 (26%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             + FS+ G           D+ APG  I ++W                     +K  SG
Sbjct: 184 SRSSFSNWGSCV--------DLFAPGSQIKSAW-----------------YDGGYKTISG 218

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TSM+ PH++G+ AL    +   +P  +   + + AS
Sbjct: 219 TSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRAS 254

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
              D  GHGTH + T  G   G+ K+ + +G+                 ++    G  ++
Sbjct: 63  DSSDCNGHGTHVAGTIGGSQYGVAKNVNIVGV-----------------RVLSCSGSGTT 105

Query: 127 ADLLAAFDDATFDGV--DVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSG 184
           + +++  D    +     V ++SLG     ST +D  +      A+  G+S + +AGNS 
Sbjct: 106 SGVISGVDWVAQNASGPSVANMSLGG--GQSTALDSAVQ----GAIQSGVSFMLAAGNSN 159

Query: 185 PYPQTVINT----APWVITVAASTID 206
                  NT     P  +TV ++T  
Sbjct: 160 ---ADACNTSPARVPSGVTVGSTTSS 182

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APG +I+ + S                       +SGTS +  H++GI A++ +  P
Sbjct: 208 DLFAPGEDIIGASS------DCSTCF---------VSQSGTSQAAAHVAGIAAMMLSAEP 252

Query: 436 TWSPAAIKSAIVTTAS 451
             + A ++  ++  ++
Sbjct: 253 ELTLAELRQRLIHFSA 268

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 30/170 (17%), Positives = 48/170 (28%), Gaps = 45/170 (26%)

Query: 55  AEFGKLNSSDRVEFL----SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGA 107
                  +    +             HGTH +   +G   G+ K AS   L         
Sbjct: 48  VMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDAGVAKGASMRSL--------- 98

Query: 108 PLAWLAIYKICWAPGGCSSADLLAAFDDATFD------GVDVISLSLGSSLPLSTYVDDI 161
                   ++    G  + +  L   +           G  V+ L L      S  ++  
Sbjct: 99  --------RVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG--GYSRVLNAA 148

Query: 162 ISIGSFHAVAKGISVVCSAGNSGP-----YPQTVINTAPWVITVAASTID 206
                      G+ +V +AGN         P     +AP VITV A+   
Sbjct: 149 CQ----RLARAGVVLVTAAGNFRDDACLYSPA----SAPEVITVGATNAQ 190

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692

 Score = 70.8 bits (173), Expect = 7e-13
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
           D+ APG +I+ + S  S    +               +SGTS +  H++GI A++ +  P
Sbjct: 360 DLFAPGEDIIGASSDCSTCFVS---------------QSGTSQAAAHVAGIAAMMLSAEP 404

Query: 436 TWSPAAIKSAIVTTAS 451
             + A ++  ++  ++
Sbjct: 405 ELTLAELRQRLIHFSA 420

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692

 Score = 60.8 bits (147), Expect = 8e-10
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 41/151 (27%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
                  HGTH +   +G   G+ K AS   L                 ++    G  + 
Sbjct: 219 QASKCDSHGTHLAGVVSGRDAGVAKGASMRSL-----------------RVLNCQGKGTV 261

Query: 127 ADLLAAFDDATFDGVD------VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA 180
           +  L   +      +       V+ L L      S  ++             G+ +V +A
Sbjct: 262 SGTLIGLEFIRKSQLVQPVGPLVVLLPLAG--GYSRVLNAACQ----RLARAGVVLVTAA 315

Query: 181 GNSGP-----YPQTVINTAPWVITVAASTID 206
           GN         P     +AP VITV A+   
Sbjct: 316 GNFRDDACLYSPA----SAPEVITVGATNAQ 342

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 26/96 (27%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             + FS+ G           DI APG +I ++W                         SG
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTW-----------------IGGRTNTISG 223

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TSM+ PHI+G+ A L  +    S  A+   I T ++
Sbjct: 224 TSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLST 258

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 40/151 (26%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
           + RD  GHGTH + T      G+ K  S  G+                 K+    G  S 
Sbjct: 63  TARDGHGHGTHCAGTIGSKTWGVAKKVSIFGV-----------------KVLDDSGSGSL 105

Query: 127 ADLLAAFDDATFDGVD-------VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCS 179
           ++++A  D    D          V S+SLG     S  ++   +       + G+ V  +
Sbjct: 106 SNIIAGMDFVASDRQSRNCPRRTVASMSLGG--GYSAALNQAAA----RLQSSGVFVAVA 159

Query: 180 AGNSGPYPQTVINT----APWVITVAASTID 206
           AGN     +   NT     P V TV A+  +
Sbjct: 160 AGNDN---RDAANTSPASEPTVCTVGATDSN 187

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 26/96 (27%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
             + FS+ G       +   DI  PG +IL++W                    + +  SG
Sbjct: 188 RRSSFSNYGSV-----L---DIFGPGTDILSTW-----------------IGGSTRSISG 222

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
           TSM+ PH++G+ A L  +  T + A+    I  TA+
Sbjct: 223 TSMATPHVAGLAAYLMTLGKT-TAASACRYIADTAN 257

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 37/151 (24%), Positives = 52/151 (34%), Gaps = 40/151 (26%)

Query: 70  SPRDAVGHGTHTSSTAAG---GMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSS 126
           S RD  GHGTH + T      G+ K     G+                 K+    G    
Sbjct: 62  SSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGV-----------------KVLDDNGSGQY 104

Query: 127 ADLLAAFDDATFDGVD-------VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCS 179
           + ++A  D    D  +       V SLSLG     S+ V+   +       + G+ V  +
Sbjct: 105 STIIAGMDFVASDKNNRNCPKGVVASLSLGG--GYSSSVNSAAA----RLQSSGVMVAVA 158

Query: 180 AGNSGPYPQTVINT----APWVITVAASTID 206
           AGN+        N      P V TV AS   
Sbjct: 159 AGNNN---ADARNYSPASEPSVCTVGASDRY 186

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 3/122 (2%)

Query: 366 SSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISG 425
           SS +     P  +    + LA+ +  S  +    +    + Q   +  +GTS S P  +G
Sbjct: 211 SSATQFGNVPWYSEACSSTLAT-TYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAG 269

Query: 426 IVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKA 485
           I+AL    +   +   ++  +V T+      A      G   K +    YG G +D    
Sbjct: 270 IIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHS--YGYGLLDAGAM 327

Query: 486 MD 487
           + 
Sbjct: 328 VA 329

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 22/174 (12%)

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
              D     +  +   HGT  +   A                   G  +A+ A       
Sbjct: 71  QDPDPQPRYTQMNDNRHGTRCAGEVAA-----------VANNGVCGVGVAYNARIGGVRM 119

Query: 121 PGGCSSADLLAAFDDATFDGVDVISLSLGSS-------LPLSTYVDDIISIGSFHAVAKG 173
             G  +  + A       + + + S S G          P     +      S      G
Sbjct: 120 LDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLG 179

Query: 174 ISVVCSAGNSG----PYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG 223
              V ++GN G             + + ++++++T     P      ++     
Sbjct: 180 SIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATT 233

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 26/214 (12%)

Query: 356 EVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESG 415
               +S    + +         +  G  I            +  +              G
Sbjct: 231 LHPPYSEGCSAVM----AVTYSSGSGEYIH-----------SSDINGRCSNSH-----GG 270

Query: 416 TSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475
           TS + P  +G+  LL   +P  +   ++   + +A   ++ A     + A  K+     Y
Sbjct: 271 TSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSH-RY 329

Query: 476 GGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLN 535
           G G +D +K ++    ++  V+    F     Y + + +       +    S K L + N
Sbjct: 330 GFGKIDAHKLIEMSKTWE-NVNAQTWFYLPTLYVSQSTNSTEETLESVITISEKSLQDAN 388

Query: 536 LPSITIPELKKSITVSR----QVTNVSPMNSVYT 565
              I    +   I         V  +SP   +  
Sbjct: 389 FKRIEHVTVTVDIDTEIRGTTTVDLISPAGIISN 422

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 73  DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAA 132
               HGT  +   A    K  +F G+      G    A ++  +I    G  ++ D  A+
Sbjct: 96  SDDYHGTRCAGEIA--AKKGNNFCGV------GVGYNAKISGIRI--LSGDITTEDEAAS 145

Query: 133 FDDATFDGVDVISLSLGS-------SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGP 185
                 D  D+ S S G          P       ++   +    +KG   V ++GN G 
Sbjct: 146 LIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGT 204

Query: 186 YPQTVI----NTAPWVITVAASTIDRAFP 210
                       + + IT+ A       P
Sbjct: 205 RGDNCNYDGYTNSIYSITIGAIDHKDLHP 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	639
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	100.0
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	100.0
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	100.0
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	100.0
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	100.0
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	100.0
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	100.0
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	100.0
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	100.0
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	100.0
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	100.0
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	100.0
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	100.0
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	100.0
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	100.0
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	100.0
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	100.0
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	100.0
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	100.0
3t41_A	471	Epidermin leader peptide processing serine protea;	100.0
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	100.0
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	100.0
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	100.0
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	100.0
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	100.0
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	100.0
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	100.0
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	100.0
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	100.0
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	100.0
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	100.0
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	100.0
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	100.0
1ga6_A	372	Serine-carboxyl proteinase; serine-carboxyl protei	99.85
1t1e_A	552	Kumamolisin; proenzyme, prosubtilase, activation m	99.83
3edy_A	544	Tripeptidyl-peptidase 1; protease, TPP1, sedolisin	99.02
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	98.72
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	96.74
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	95.85
3kas_A	640	Transferrin receptor protein 1; transferrin recept	95.3
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	94.75
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	94.73
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	87.66
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	87.25
2r39_A	118	FIXG-related protein; structural GE PSI-2, protein	85.53
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	83.92
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	83.17

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=100.00  E-value=3.8e-119  Score=1014.54  Aligned_cols=604  Identities=37%  Similarity=0.622  Sum_probs=543.0

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.++++.++|.+|+|.|+.+.+|+...||+|++++++|.+++.....    ....+..+++|..|||||
T Consensus        31 iDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~~~~~~~~~----~~~~~~~~~~D~~GHGTh  106 (649)
T 3i6s_A           31 LDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDP----TVNITMNSARDTDGHGTH  106 (649)
T ss_dssp             EESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECCHHHHHHCT----TCCCTTCSSBCSSSHHHH
T ss_pred             EccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEeccCccccccc----ccccCCCCCCCCCCcHHH
Confidence            7999999999999999999999999999999999999999999999999977654321    123456688999999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||||+..++.+.+|++.+.+.||||+|+|++||+++.. ++..+++++||+||+++|+||||||||...  ..+..+
T Consensus       107 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~--~~~~~~  183 (649)
T 3i6s_A          107 CASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISYGYRF--IPLYED  183 (649)
T ss_dssp             HHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT-EECHHHHHHHHHHHHHTTCSEEEECCCCCS--CCGGGC
T ss_pred             HHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC-CCCHHHHHHHHHHHHHcCCCEEEeCCccCC--cccchh
Confidence            99999999988888888888889999999999999999984 499999999999999999999999999873  347789


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      ++.+++++|+++|++||+||||+|+...++.+.+||+|+|||++.+|.|...+.+++++.+.|.+++.... ....+|++
T Consensus       184 ~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lgng~~~~g~sl~~~~~-~~~~~plv  262 (649)
T 3i6s_A          184 AISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARA-FVRDSPVI  262 (649)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEETTSCEEEEECCCSSCB-CEEEEEEE
T ss_pred             HHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeCCCcEEeeeecccCcc-cCcceeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999987765 46689999


Q ss_pred             EccccccCCCCccccCccCCCCCCCccc--cccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLV--RGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYI  318 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~  318 (639)
                      +..          ....|.+..++..++  +||||+|.|  |.|.+.+|..+++++|+.|+|++++........+.+|++
T Consensus       263 ~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~--g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~P~~  330 (649)
T 3i6s_A          263 YNK----------TLSDCSSEELLSQVENPENTIVICDD--NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGV  330 (649)
T ss_dssp             CCT----------TTTTCCCHHHHTTSSSGGGCEEEECC--CSCHHHHHHHHHHHTCSEEEEECCCGGGGGCCCCCSCEE
T ss_pred             ecc----------cccccccccccccccccCCcEEEEeC--CCccHHHHHHHHHhcCceEEEEecCccccccccCcCCEE
Confidence            864          357899888888777  999999999  899999999999999999999999884446678899999


Q ss_pred             EEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCC
Q 006600          319 QVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTD  398 (639)
Q Consensus       319 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~  398 (639)
                      .++..+++.|++|++++.+++++|.+..++.+....+.++.||||||+...+++|||||+|||++|+|+|+.........
T Consensus       331 ~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~  410 (649)
T 3i6s_A          331 VVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIG  410 (649)
T ss_dssp             EECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEET
T ss_pred             EEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccc
Confidence            99999999999999999999999999999988888999999999999997789999999999999999999754433222


Q ss_pred             CCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCC
Q 006600          399 HVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGG  478 (639)
Q Consensus       399 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G  478 (639)
                      .+.  + +...|..+||||||||||||++|||||+||+|+|++||++||+||.++++.+.|+.++ ....++++++||+|
T Consensus       411 ~d~--~-~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~-~~~~~a~~~~~GaG  486 (649)
T 3i6s_A          411 TNI--L-LSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDS-DNNKAATPLDMGAG  486 (649)
T ss_dssp             TTE--E-ECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEET-TTSSBCCHHHHTTC
T ss_pred             ccc--c-cccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccccc-ccCCcCCcCCCCee
Confidence            220  0 1378999999999999999999999999999999999999999999999999999886 25678899999999


Q ss_pred             CCCcCCcCCCCeeeeCcccchhhhhhcCCCCccceeecccCccc--ccCCCccccccCCcCeEEecc-cCcc-----EEE
Q 006600          479 HVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTT--CNDKSTKFLVNLNLPSITIPE-LKKS-----ITV  550 (639)
Q Consensus       479 ~id~~~A~~~~lv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ln~ps~~~~~-~~~~-----~~~  550 (639)
                      +||+.+|++||||||++.+||+.|||++||+..+|+.|++.+..  |+.    ...+||||||++.. +.+.     ++|
T Consensus       487 ~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyPs~~~~~~~~~~~~~~~~~~  562 (649)
T 3i6s_A          487 HVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYPSFIALYSIEGNFTLLEQKF  562 (649)
T ss_dssp             BCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCSSEEEEECCSSCCCCEEEEE
T ss_pred             eeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCCcEEeecccCCCCccceEEE
Confidence            99999999999999999999999999999999999999998877  974    56799999999987 5666     899


Q ss_pred             EEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEc--CceEEEEeEEE
Q 006600          551 SRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWED--GIHVVRIPLIV  628 (639)
Q Consensus       551 ~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~--~~~~v~~P~~~  628 (639)
                      +|||||||+...+|++.++.|.|++|+|+|++|+|.+.+|+++|+|+|+......+.|.||+|+|++  +.|.||+||+|
T Consensus       563 ~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v  642 (649)
T 3i6s_A          563 KRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT  642 (649)
T ss_dssp             EEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEE
T ss_pred             EEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEE
Confidence            9999999998999999999999999999999999988899999999999765556778999999999  89999999999


Q ss_pred             EeEe
Q 006600          629 RTII  632 (639)
Q Consensus       629 ~~~~  632 (639)
                      +.++
T Consensus       643 ~~~~  646 (649)
T 3i6s_A          643 SPII  646 (649)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            8753

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=100.00  E-value=2.4e-110  Score=945.81  Aligned_cols=590  Identities=43%  Similarity=0.738  Sum_probs=495.1

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      |||||||+||+|+|++++++|.+|+|.|+.+.+|.   ||+|++++++|..+....        ..+..+|+|.+|||||
T Consensus        29 iDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~~~~~~~~~~--------~~~~~~p~D~~GHGTH   97 (621)
T 3vta_A           29 LDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPIS--------PGDVNGPRDTNGHGTH   97 (621)
T ss_dssp             EESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEEECCCSSSCC--------TTCCSSSBCSSSHHHH
T ss_pred             EecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeeeecccCCccC--------CCCCCCCCCCCcCHHH
Confidence            79999999999999999999999999999998886   999999999998764432        3455689999999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||||+..++.+..|++.+.++||||+|+|++||+|++ .+|..+++++||++|+++|+||||||||+.. +.++..+
T Consensus        98 vAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~di~~a~~~a~~~g~dVin~SlG~~~-~~~~~~~  175 (621)
T 3vta_A           98 TASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN-DGCSDTDILAAYDDAIADGVDIISLSVGGAN-PRHYFVD  175 (621)
T ss_dssp             HHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEET-TEECHHHHHHHHHHHHHHTCSEEEECCCCCC-GGGGGGC
T ss_pred             HHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecC-CCCCHHHHHHHHHHHHHhCCCEEEecCCCCC-CCCcCCc
Confidence            9999999998888888888888999999999999999998 5688999999999999999999999999886 5557788


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      ++++++++|+++||+||+||||+|+...++.+.+||+++|++++.++.+...+.++++..+.+.++...   ....++++
T Consensus       176 ~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~  252 (621)
T 3vta_A          176 AIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTF---DNQYYPLV  252 (621)
T ss_dssp             THHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEEBCCCCS---CCEEECEE
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeeeeecccC---CCcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999988877543   34577888


Q ss_pred             EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV  320 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i  320 (639)
                      +..+.............|.+..+++.+++|||++|.+.     +..+..+....|+.++|++++... ..+.+.+|...+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~-----~~~~~~~~~~~Ga~gvi~~~~~~~-~~~~~~lP~~~v  326 (621)
T 3vta_A          253 SGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS-----FGPHEFFKSLDGAAGVLMTSNTRD-YADSYPLPSSVL  326 (621)
T ss_dssp             ETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC-----CCHHHHHHHHTTCSEEEEECSCCS-SCCCCSSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceEEEEecC-----CChhHHhhhhcceeEEEEEecCCC-cccccccceEEE
Confidence            87765555555566778999999999999999999762     335666778889999999987654 345678999999


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV  400 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~  400 (639)
                      +..++..++.|+..+..+...+....+.. +...+.++.||||||+...++++||||+|||++|+|+++.........  
T Consensus       327 ~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~--  403 (621)
T 3vta_A          327 DPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIR--  403 (621)
T ss_dssp             CHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEECCSSSCBTTBC--
T ss_pred             CHHHHHHHHHHHhccCCcceEEecceEec-cCCCCceeeecCCCCCCCCCCeeccccccCCcceEeecCccccccCcC--
Confidence            99999999999999998888876655544 456789999999999987789999999999999999998654332211  


Q ss_pred             CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCC
Q 006600          401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV  480 (639)
Q Consensus       401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~i  480 (639)
                           +...|..|||||||||||||+||||||+||+|+|++||++||+||++++..          ..++.+++||+|+|
T Consensus       404 -----~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~----------~~~~~~~~~GaG~v  468 (621)
T 3vta_A          404 -----RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR----------FNPQAEFAYGSGHV  468 (621)
T ss_dssp             -----CCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTT----------TCTTTHHHHTTCBC
T ss_pred             -----CCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccccc----------CCCCCchhcCCCcc
Confidence                 157899999999999999999999999999999999999999999977543          34567789999999


Q ss_pred             CcCCcCCCCeeeeCcccchhhhhhcCCCCccceeecccCcccccCCCccccccCCcCeEEec---ccCccEEEEEEEEEc
Q 006600          481 DPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVNLNLPSITIP---ELKKSITVSRQVTNV  557 (639)
Q Consensus       481 d~~~A~~~~lv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~---~~~~~~~~~~tvtn~  557 (639)
                      |+.+|++||||||++.+||+.|||+++|+.++++.+++....|+........+||||||++.   ++..+++|+|||||+
T Consensus       469 ~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnv  548 (621)
T 3vta_A          469 NPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSV  548 (621)
T ss_dssp             CHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEEC
T ss_pred             CHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEcc
Confidence            99999999999999999999999999999999999999988998766677899999999985   455789999999999


Q ss_pred             CCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEcCceEEEEeEEEEeEe
Q 006600          558 SPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII  632 (639)
Q Consensus       558 ~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~~~v~~P~~~~~~~  632 (639)
                      |....+|+++++.|+|++|+|+|++|+|.+.+|+++|+|+|+.  ..++.|+||+|+|+++.|.||+||+|+..|
T Consensus       549 g~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~--~~~~~~~~g~l~w~d~~h~Vr~Pi~v~~~i  621 (621)
T 3vta_A          549 APQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG--SIKGFVVSASLVWSDGVHYVRSPITITSLV  621 (621)
T ss_dssp             SSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE--CCCSSEEEEEEEEECSSCCCEEEEEEECC-
T ss_pred             CCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe--cCCCceEEEEEEEEcCCEEEEeCEEEEEeC
Confidence            9999999999999999999999999999988999999999975  467889999999999999999999999765

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=100.00  E-value=1.1e-81  Score=739.41  Aligned_cols=520  Identities=23%  Similarity=0.266  Sum_probs=409.0

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCc----------CCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCC
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGF----------NRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLS   70 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f----------~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (639)
                      ||||||++||+|++.      ..|++.|..+..|          ...+||+|++++++|.++.                .
T Consensus        24 IDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~----------------~   81 (926)
T 1xf1_A           24 IDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG----------------K   81 (926)
T ss_dssp             EESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS----------------C
T ss_pred             EecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC----------------C
Confidence            799999999999853      4566666432211          1346999999999997641                1


Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG-CSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ..|..||||||||||||+...+.+.    ++.+.||||+|+|++||+|+..+. +..+++++||++|+++|+||||||||
T Consensus        82 ~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~SlG  157 (926)
T 1xf1_A           82 TAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFG  157 (926)
T ss_dssp             CCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEEEECCC
Confidence            2288999999999999987554321    346799999999999999987432 45678999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCC-------------CCcccCC--CCcEEEEEeeccCCccceEEE
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPY-------------PQTVINT--APWVITVAASTIDRAFPTAIT  214 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~~--ap~vitVgA~~~~~~~~~~~~  214 (639)
                      ......+...+.+..++++|+++||+||+||||+|+.             ..++.++  +||+|+|||++.++.+...+.
T Consensus       158 ~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~~~~~~  237 (926)
T 1xf1_A          158 NAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVR  237 (926)
T ss_dssp             SCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEEEEEEE
T ss_pred             CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccccccccccceE
Confidence            8742233456788999999999999999999999963             2334444  799999999999999988888


Q ss_pred             e-CCceEEEeEEeecC-cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhh
Q 006600          215 M-GNNQTVVGQAFYNG-KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVL  292 (639)
Q Consensus       215 ~-~~~~~~~g~~~~~~-~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~  292 (639)
                      + +++....+.++... .++....+|+++...            .|.+..+  .+++||||+|+|  |.|.+.+|..+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkivl~~r--g~~~~~~k~~~~~  301 (926)
T 1xf1_A          238 VKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIALIER--GDIDFKDKIAKAK  301 (926)
T ss_dssp             EECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEEEEEC--CSSCHHHHHHHHH
T ss_pred             EEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCeEEEEEC--CCCCHHHHHHHHH
Confidence            7 55544444444332 222456789988643            3665555  689999999999  8999999999999


Q ss_pred             cCCceEEEEecCCCCC----CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCC
Q 006600          293 DSGGVGLIFAKFPTKD----VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSL  368 (639)
Q Consensus       293 ~~Ga~g~i~~~~~~~~----~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~  368 (639)
                      ++|++|+|++++....    ......+|+..++..++.+|++    ....++++............+.++.||||||+. 
T Consensus       302 ~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~-  376 (926)
T 1xf1_A          302 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA-  376 (926)
T ss_dssp             HTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT-
T ss_pred             hCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcceeccccCCCCCC-
Confidence            9999999999887543    3466889999999999998874    444444444444345566678999999999997 


Q ss_pred             CCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHH---
Q 006600          369 SPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAA---  441 (639)
Q Consensus       369 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~---  441 (639)
                       ++++||||+|||++|+|+++                 ++.|..+||||||||||||+||||+|    .||+|+|+|   
T Consensus       377 -~~~lKPDI~APG~~I~sa~~-----------------~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~  438 (926)
T 1xf1_A          377 -DGNIKPDIAAPGQDILSSVA-----------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLD  438 (926)
T ss_dssp             -TSCBSCCEEEECCCEEESSS-----------------CSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHH
T ss_pred             -CCccCceEECCCCCEEeecc-----------------CCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence             99999999999999999997                 47899999999999999999999964    599999997   


Q ss_pred             -HHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCCCeeeeCcccchhhhhhcCCCCccceeecccCc
Q 006600          442 -IKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRAS  520 (639)
Q Consensus       442 -vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  520 (639)
                       ||++||+||++++..+        ....+++++||+|+||+.+|+++.+           |||..+++..         
T Consensus       439 ~Iks~L~~TA~~~~~~~--------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~---------  490 (926)
T 1xf1_A          439 LAKKVLMSSATALYDED--------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS---------  490 (926)
T ss_dssp             HHHHHHHHHSBCCEEGG--------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS---------
T ss_pred             HHHHHHHhcCCCcccCC--------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc---------
Confidence             9999999999764321        1235678899999999999999854           5677654332         


Q ss_pred             ccccCCCccccccCCcCeEEecccCccEEEEEEEEEcCCCC--eeEEEEEeC--CCCceEEEecCeEEEc-------CCC
Q 006600          521 TTCNDKSTKFLVNLNLPSITIPELKKSITVSRQVTNVSPMN--SVYTARVQA--PAGTTVRVEPSTLTFN-------STR  589 (639)
Q Consensus       521 ~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tvtn~~~~~--~ty~~~~~~--~~g~~v~v~p~~~~~~-------~~g  589 (639)
                                       +|.+.++.+.++++|||||+|+.+  .+|++++..  |.+..++|+|..|.+.       ++|
T Consensus       491 -----------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag  553 (926)
T 1xf1_A          491 -----------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPAN  553 (926)
T ss_dssp             -----------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTT
T ss_pred             -----------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCC
Confidence                             345555566889999999999754  567777764  6788888888766554       359


Q ss_pred             cEEEEEEEEEEee--------cCCCceEEEEEEEEc--Cce-EEEEeEEEEe
Q 006600          590 KKLKFKVTFYSRL--------RVQGRYSFGNLFWED--GIH-VVRIPLIVRT  630 (639)
Q Consensus       590 ~~~~~~v~~~~~~--------~~~~~~~~G~i~~~~--~~~-~v~~P~~~~~  630 (639)
                      |+++|+|+|++..        .+++.|+||+|+|++  +.| .||+||+++.
T Consensus       554 ~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~  605 (926)
T 1xf1_A          554 SSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR  605 (926)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred             CEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence            9999999999751        246679999999994  555 5999999975

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=100.00  E-value=1.7e-53  Score=464.11  Aligned_cols=334  Identities=21%  Similarity=0.285  Sum_probs=246.6

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCC--eEEEEEeecCCCCCCHHHHHHHHHHHHhC-CCcEEEE
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLA--WLAIYKICWAPGGCSSADLLAAFDDATFD-GVDVISL  146 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~L~~~kv~~~~~~~~~~~i~~ai~~a~~~-g~dVIn~  146 (639)
                      ++.|..||||||||||+|...         +.++.||||+|  +|+.+|+++..+.+..+++++||+||+++ |++||||
T Consensus        58 ~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~  128 (441)
T 1y9z_A           58 QPGNNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTM  128 (441)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCCCCcHHHHHHHHhcccC---------CCCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEe
Confidence            567889999999999999852         12468999995  99999999876667888999999999999 9999999


Q ss_pred             ccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCC---------
Q 006600          147 SLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGN---------  217 (639)
Q Consensus       147 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~---------  217 (639)
                      |||...     ....+..++.++.++|++||+||||+|......+...+++|+|||++.+.....+...+.         
T Consensus       129 S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~  203 (441)
T 1y9z_A          129 SLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGE  203 (441)
T ss_dssp             CCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECS
T ss_pred             CCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccC
Confidence            999873     234677888999999999999999999877777778899999999987754322211111         


Q ss_pred             ----------ce----EEEeEEeecCcC-CCCceee--eEEccccccCCCCccccCccCCC--CCCCccccccEEEEEeC
Q 006600          218 ----------NQ----TVVGQAFYNGKE-DLNKFYP--IVIGKDIATFDADEGSARSCESG--TLNATLVRGKIVICFQS  278 (639)
Q Consensus       218 ----------~~----~~~g~~~~~~~~-~~~~~~p--l~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gkivl~~~~  278 (639)
                                ++    .+.|.+++.... +....++  +.+..... ..........|...  .++..+++|||++|+| 
T Consensus       204 ~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~r-  281 (441)
T 1y9z_A          204 AILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFSCGNMANKICLVER-  281 (441)
T ss_dssp             SEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEECCCCTTEEEEEEC-
T ss_pred             CeeccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhccccccccccCCCccccEEEEec-
Confidence                      11    122222211100 0000000  11111100 00001123457753  5677899999999999 


Q ss_pred             CCc-----chHHHHHHhhhcCCceEEEEecCCCCC---------CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEe
Q 006600          279 QFQ-----RSAATAARTVLDSGGVGLIFAKFPTKD---------VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSF  344 (639)
Q Consensus       279 ~g~-----~~~~~k~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~  344 (639)
                       +.     +.+.+|..+++++|+.++|++++....         ......+|.+.++..+++.|+.|+.++    +    
T Consensus       282 -g~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~----  352 (441)
T 1y9z_A          282 -VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T----  352 (441)
T ss_dssp             -CSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E----
T ss_pred             -cccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----c----
Confidence             54     478899999999999999999876432         123467999999999999999876321    0    


Q ss_pred             ceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHH
Q 006600          345 TKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA  424 (639)
                                                     .+        ++..                 .+.|..++||||||||||
T Consensus       353 -------------------------------t~--------~~~~-----------------~~~y~~~sGTSmAaP~VA  376 (441)
T 1y9z_A          353 -------------------------------TV--------SNQG-----------------NQDYEYYNGTSMATPHVS  376 (441)
T ss_dssp             -------------------------------EE--------EEEE-----------------EESEEEECSHHHHHHHHH
T ss_pred             -------------------------------cc--------cccc-----------------CCCceeecccccCCcccc
Confidence                                           00        1111                 478999999999999999


Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCCCeeeeCcccchhhhhh
Q 006600          425 GIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLC  504 (639)
Q Consensus       425 G~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~l~  504 (639)
                      |++|||+|+||+|+|++||++||+||++++..+             .+.+||+|+||+.+|+           ||+.|||
T Consensus       377 G~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g-------------~~~~~G~G~vn~~~A~-----------~~~~~lc  432 (441)
T 1y9z_A          377 GVATLVWSYHPECSASQVRAALNATADDLSVAG-------------RDNQTGYGMINAVAAK-----------AYLDESC  432 (441)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS-------------CBTTTBTCBCCHHHHH-----------HHHHHCT
T ss_pred             hHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC-------------CcccccccccCHHHHH-----------HHHHhhh
Confidence            999999999999999999999999999765432             2457999999999996           4999999


Q ss_pred             cCCC
Q 006600          505 AMGY  508 (639)
Q Consensus       505 ~~~~  508 (639)
                      ++++
T Consensus       433 ~~~~  436 (441)
T 1y9z_A          433 TGPT  436 (441)
T ss_dssp             TCC-
T ss_pred             cCCC
Confidence            9874

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=100.00  E-value=3.2e-51  Score=454.26  Aligned_cols=267  Identities=38%  Similarity=0.516  Sum_probs=218.7

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+                           ++++.++|..+               ..++.|+.|||||
T Consensus       146 iDtGid~~Hpdl~~---------------------------~i~~~~d~~~~---------------~~~~~D~~gHGTh  183 (539)
T 3afg_A          146 IDTGIDASHPDLQG---------------------------KVIGWVDFVNG---------------KTTPYDDNGHGTH  183 (539)
T ss_dssp             EESBCCTTSGGGTT---------------------------TEEEEEETTTC---------------CSSCCBSSSHHHH
T ss_pred             EecCCCCCChHHhC---------------------------CEeeeEECCCC---------------CCCCCCCCCCHHH
Confidence            79999999999943                           35566677543               1256789999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC----CCcEEEEccCCCCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD----GVDVISLSLGSSLPLST  156 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~dVIn~SlG~~~~~~~  156 (639)
                      |||||||+...       ..+.+.||||+|+|+++|+++..+.+..+++++||+||+++    |++|||||||...  ..
T Consensus       184 VAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~--~~  254 (539)
T 3afg_A          184 VASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ--SS  254 (539)
T ss_dssp             HHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS--CC
T ss_pred             HHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC--CC
Confidence            99999998532       12346899999999999999876677889999999999986    9999999999874  22


Q ss_pred             CccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCC
Q 006600          157 YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLN  234 (639)
Q Consensus       157 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  234 (639)
                      ...+.+..+++++.++|++||+||||+|+...++  +...+++|+|||++..                            
T Consensus       255 ~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~----------------------------  306 (539)
T 3afg_A          255 DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY----------------------------  306 (539)
T ss_dssp             CSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT----------------------------
T ss_pred             ccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC----------------------------
Confidence            4567889999999999999999999999865443  4567899999975421                            


Q ss_pred             ceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCcccc
Q 006600          235 KFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFG  314 (639)
Q Consensus       235 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~  314 (639)
                                                                                                      
T Consensus       307 --------------------------------------------------------------------------------  306 (539)
T 3afg_A          307 --------------------------------------------------------------------------------  306 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCC
Q 006600          315 VPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNL  394 (639)
Q Consensus       315 ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~  394 (639)
                                                              +.++.||||||+.  ++++||||+|||++|+++++.....
T Consensus       307 ----------------------------------------~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~  344 (539)
T 3afg_A          307 ----------------------------------------DVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM  344 (539)
T ss_dssp             ----------------------------------------SCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC
T ss_pred             ----------------------------------------cccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC
Confidence                                                    3778999999998  8999999999999999999753211


Q ss_pred             ccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCC
Q 006600          395 EQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFD  474 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~  474 (639)
                      ..        .....|..++|||||||||||++|||+|++|+|++++||++|++||+++...            ..+.+.
T Consensus       345 ~~--------~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~------------~~~~~~  404 (539)
T 3afg_A          345 GQ--------PINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPD------------EIADIA  404 (539)
T ss_dssp             SE--------ECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGG------------GCSBTT
T ss_pred             CC--------CCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC------------CCCccC
Confidence            00        0024699999999999999999999999999999999999999999975321            134568


Q ss_pred             CCCCCCCcCCcCCC
Q 006600          475 YGGGHVDPNKAMDP  488 (639)
Q Consensus       475 ~G~G~id~~~A~~~  488 (639)
                      ||+|+||+.+|++.
T Consensus       405 ~G~G~vn~~~Al~~  418 (539)
T 3afg_A          405 YGAGRVNAYKAAYY  418 (539)
T ss_dssp             TBTCBCCHHHHHTG
T ss_pred             ccCCccCHHHHhhh
Confidence            99999999999984

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=100.00  E-value=3.2e-49  Score=404.57  Aligned_cols=242  Identities=28%  Similarity=0.323  Sum_probs=198.6

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           ++.+++|.++               ..+|.|..|||||
T Consensus        38 iDtGvd~~hp~l~~~---------------------------~~~~~~~~~~---------------~~~~~d~~gHGT~   75 (280)
T 1dbi_A           38 IDTGVDYTHPDLDGK---------------------------VIKGYDFVDN---------------DYDPMDLNNHGTH   75 (280)
T ss_dssp             EESCCCTTSTTTTTT---------------------------EEEEEETTTT---------------BSCCCCSSSHHHH
T ss_pred             EeCCcCCCChhhccC---------------------------cccceeccCC---------------CCCCCCCCCcHHH
Confidence            799999999999542                           3455666543               1246788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||+|...++        ..+.||||+|+|+.+|++...+.+..+++++||+||+++|++|||||||...     ...
T Consensus        76 vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~-----~~~  142 (280)
T 1dbi_A           76 VAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HTT  142 (280)
T ss_dssp             HHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CCH
T ss_pred             HHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CCH
Confidence            999999985432        2458999999999999998767788999999999999999999999999873     346


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      .+..+++++.++|++||+||||+|......+...+++|+|||++..                                  
T Consensus       143 ~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------  188 (280)
T 1dbi_A          143 TLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------------------------------  188 (280)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT----------------------------------
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC----------------------------------
Confidence            7888889999999999999999997766667778999999975422                                  


Q ss_pred             EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV  320 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i  320 (639)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (280)
T 1dbi_A          189 --------------------------------------------------------------------------------  188 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV  400 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~  400 (639)
                                                        +.++.||++||.+        ||+|||++|+++++           
T Consensus       189 ----------------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~-----------  215 (280)
T 1dbi_A          189 ----------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTIT-----------  215 (280)
T ss_dssp             ----------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEET-----------
T ss_pred             ----------------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecC-----------
Confidence                                              3678999999866        99999999999987           


Q ss_pred             CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCC
Q 006600          401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV  480 (639)
Q Consensus       401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~i  480 (639)
                            ++.|..++|||||||||||++|||++  |++++.+||++|++||+++..               ....||+|+|
T Consensus       216 ------~~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~---------------~~~~~G~G~v  272 (280)
T 1dbi_A          216 ------GNRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG---------------TGTYFKYGRI  272 (280)
T ss_dssp             ------TTEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT---------------BTTTBSSEEC
T ss_pred             ------CCCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC---------------CCCcccCCEE
Confidence                  57899999999999999999999987  899999999999999997531               1246999999


Q ss_pred             CcCCcCC
Q 006600          481 DPNKAMD  487 (639)
Q Consensus       481 d~~~A~~  487 (639)
                      |+.+|++
T Consensus       273 n~~~A~~  279 (280)
T 1dbi_A          273 NSYNAVT  279 (280)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHhc
Confidence            9999976

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=100.00  E-value=1.3e-50  Score=429.19  Aligned_cols=291  Identities=21%  Similarity=0.177  Sum_probs=184.1

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|++..+.+....|+..++.....+. ..+..+..  .............  ....+..++.|.+|||||
T Consensus        38 iDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~D~~gHGTh  112 (357)
T 4h6x_A           38 IDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDY-AAFQSIRD--QGLKGKEKEEALE--AVIPDTKDRIVLNDHACH  112 (357)
T ss_dssp             EESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHH-HHHHHHHH--HTCCSHHHHHHHH--HHCTTTHHHHHHHHHHHH
T ss_pred             EcCCCCCCChhHcCCCcccccccccccccccCcccc-cccccccC--ccccccccccccc--cccCCCCCCcCCCCcHHH
Confidence            799999999999987666666677765442211000 00000000  0000000000000  001122345677899999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC-----CCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP-----GGCSSADLLAAFDDATFDGVDVISLSLGSSLPLS  155 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~-----~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~  155 (639)
                      |||||||+..          ..+.||||+|+|+.+|++...     +.....+++++|+||++.|++|||||||... ..
T Consensus       113 VAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-~~  181 (357)
T 4h6x_A          113 VTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPT-QT  181 (357)
T ss_dssp             HHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSEEEEC--------
T ss_pred             HHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCEEeeccccCC-cc
Confidence            9999999742          245899999999999997542     2344567899999999999999999999875 33


Q ss_pred             CCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCc
Q 006600          156 TYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNK  235 (639)
Q Consensus       156 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  235 (639)
                      ....+.+..++.++.++|++||+||||+|......+...|++|+|||++.+                             
T Consensus       182 ~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------------------------  232 (357)
T 4h6x_A          182 SEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD-----------------------------  232 (357)
T ss_dssp             ----CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-----------------------------
T ss_pred             ccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-----------------------------
Confidence            345677888999999999999999999998777777778999999985422                             


Q ss_pred             eeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccc
Q 006600          236 FYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGV  315 (639)
Q Consensus       236 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~i  315 (639)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (357)
T 4h6x_A          233 --------------------------------------------------------------------------------  232 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCc
Q 006600          316 PYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLE  395 (639)
Q Consensus       316 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~  395 (639)
                                                             +.++.|||||+..     .||||+|||++|+++++.     
T Consensus       233 ---------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~-----  263 (357)
T 4h6x_A          233 ---------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEILGAQPC-----  263 (357)
T ss_dssp             ---------------------------------------SSBCTTCC---CT-----TTTEEEEECSSEEECCTT-----
T ss_pred             ---------------------------------------CcccccccCCCCC-----CccceeecCCCeEeccCC-----
Confidence                                                   4778999999754     599999999999999874     


Q ss_pred             cCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCC
Q 006600          396 QTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQAD  471 (639)
Q Consensus       396 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~  471 (639)
                                 ++.|..++|||||||||||++|||++    ++|.|+++|||++|++||++++.           .....
T Consensus       264 -----------~~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~-----------~~~~~  321 (357)
T 4h6x_A          264 -----------TEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDP-----------EVVEE  321 (357)
T ss_dssp             -----------CSCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------------
T ss_pred             -----------CCcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCC-----------CCCCC
Confidence                       46778899999999999999999995    45789999999999999996532           12334


Q ss_pred             CCCCCCCCCCcCCcCC
Q 006600          472 PFDYGGGHVDPNKAMD  487 (639)
Q Consensus       472 ~~~~G~G~id~~~A~~  487 (639)
                      +.+||+|+||+.+|++
T Consensus       322 ~~~~G~G~vn~~~A~~  337 (357)
T 4h6x_A          322 PERCLRGFVNIPGAMK  337 (357)
T ss_dssp             ---CTTCBCCHHHHHH
T ss_pred             cccceeEEecHHHHHH
Confidence            5679999999999987

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=100.00  E-value=6.8e-49  Score=401.09  Aligned_cols=214  Identities=30%  Similarity=0.421  Sum_probs=184.6

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS  150 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~  150 (639)
                      +.|..||||||||||+|..+         ...+.||||+|+|+.+|++...+.+..++++++|+||++++++|||||||.
T Consensus        57 ~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~  127 (274)
T 1r0r_E           57 NTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGG  127 (274)
T ss_dssp             TCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEB
T ss_pred             CCCCCCCHHHHHHHHHccCC---------CCceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            56789999999999999731         224689999999999999987667788999999999999999999999998


Q ss_pred             CCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC----CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEe
Q 006600          151 SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP----QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAF  226 (639)
Q Consensus       151 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~  226 (639)
                      ..     ....+..+++++.++|++||+||||+|...    ...+...+++|+|||++.+                    
T Consensus       128 ~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------  182 (274)
T 1r0r_E          128 AS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------------------  182 (274)
T ss_dssp             SS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT--------------------
T ss_pred             CC-----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC--------------------
Confidence            74     346788889999999999999999999752    3345566889999975321                    


Q ss_pred             ecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC
Q 006600          227 YNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT  306 (639)
Q Consensus       227 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~  306 (639)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (274)
T 1r0r_E          183 --------------------------------------------------------------------------------  182 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEe
Q 006600          307 KDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILA  386 (639)
Q Consensus       307 ~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s  386 (639)
                                                                      +.++.||++||.+        ||+|||++|++
T Consensus       183 ------------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s  206 (274)
T 1r0r_E          183 ------------------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYS  206 (274)
T ss_dssp             ------------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEE
T ss_pred             ------------------------------------------------CCcCccCCCCCCc--------eEEeCCCCeEe
Confidence                                                            3678899999855        99999999999


Q ss_pred             ccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCC
Q 006600          387 SWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAP  466 (639)
Q Consensus       387 a~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~  466 (639)
                      +++                 .+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.            
T Consensus       207 ~~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------------  257 (274)
T 1r0r_E          207 TYP-----------------TNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------------  257 (274)
T ss_dssp             EET-----------------TTEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------------
T ss_pred             ecC-----------------CCCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC------------
Confidence            987                 578999999999999999999999999999999999999999999652            


Q ss_pred             CCCCCCCCCCCCCCCcCCcCC
Q 006600          467 HKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       467 ~~~~~~~~~G~G~id~~~A~~  487 (639)
                          ++..||+|+||+.+|++
T Consensus       258 ----~~~~~G~G~~~~~~A~~  274 (274)
T 1r0r_E          258 ----SSFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             ----CHHHHTTCBCCHHHHTC
T ss_pred             ----CCCCcccCccCHHHHhC
Confidence                24579999999999985

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=100.00  E-value=1.3e-48  Score=397.55  Aligned_cols=215  Identities=32%  Similarity=0.412  Sum_probs=188.4

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ++.|..||||||||||+|..+         ...+.||||+|+|+.+|++...+.+..+++++||+||++++++|||||||
T Consensus        55 ~~~d~~gHGT~vAgiia~~~~---------~~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G  125 (269)
T 1gci_A           55 STQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLG  125 (269)
T ss_dssp             SCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCCCCChHHHHHHHhcCcC---------CCCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence            356889999999999999731         22458999999999999998767788899999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                      ...     ....+..+++++.++|++||+||||+|......+...+++|+|||++.+                       
T Consensus       126 ~~~-----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------------------  177 (269)
T 1gci_A          126 SPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-----------------------  177 (269)
T ss_dssp             BSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------------
T ss_pred             CCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-----------------------
Confidence            873     2457888889999999999999999998777777778999999975422                       


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (269)
T 1gci_A          178 --------------------------------------------------------------------------------  177 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS  389 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~  389 (639)
                                                                   +.++.||++||.+        ||+|||++|+++++
T Consensus       178 ---------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~  204 (269)
T 1gci_A          178 ---------------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYP  204 (269)
T ss_dssp             ---------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEET
T ss_pred             ---------------------------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecC
Confidence                                                         3678999999976        99999999999987


Q ss_pred             CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCC
Q 006600          390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQ  469 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~  469 (639)
                                       ++.|..++|||||||||||++|||+|++|+|++.|||++|++||+++.               
T Consensus       205 -----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------------  252 (269)
T 1gci_A          205 -----------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------  252 (269)
T ss_dssp             -----------------TTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------
T ss_pred             -----------------CCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC---------------
Confidence                             578999999999999999999999999999999999999999999652               


Q ss_pred             CCCCCCCCCCCCcCCcCC
Q 006600          470 ADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       470 ~~~~~~G~G~id~~~A~~  487 (639)
                       ++..||+|+||+.+|++
T Consensus       253 -~~~~~G~G~vn~~~A~~  269 (269)
T 1gci_A          253 -STNLYGSGLVNAEAATR  269 (269)
T ss_dssp             -CHHHHTTCBCCHHHHTC
T ss_pred             -CCCCcccCccCHHHHcC
Confidence             24479999999999985

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=100.00  E-value=1.9e-48  Score=398.91  Aligned_cols=242  Identities=29%  Similarity=0.372  Sum_probs=205.4

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+                           +++.+++|.++               ..++.|..|||||
T Consensus        37 iDtGvd~~h~~l~~---------------------------~~~~~~~~~~~---------------~~~~~d~~gHGT~   74 (279)
T 1thm_A           37 VDTGVQSNHPDLAG---------------------------KVVGGWDFVDN---------------DSTPQNGNGHGTH   74 (279)
T ss_dssp             EESCCCTTCTTTTT---------------------------TEEEEEETTTT---------------BSCCCCSSSHHHH
T ss_pred             EccCCCCCCcchhc---------------------------CccccccccCC---------------CCCCCCCCCcHHH
Confidence            79999999999954                           24455666543               1246788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||||+|...++        ..+.||||+|+|+.+|++...+.+..+++++||+||+++|++|||||||...     ..+
T Consensus        75 vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-----~~~  141 (279)
T 1thm_A           75 CAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GNS  141 (279)
T ss_dssp             HHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CCH
T ss_pred             HHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-----CCH
Confidence            999999986432        2458999999999999998767788899999999999999999999999873     346


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      .+..+++++.++|++||+||||+|......+...+++|+|||++.+                                  
T Consensus       142 ~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------  187 (279)
T 1thm_A          142 GLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN----------------------------------  187 (279)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT----------------------------------
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC----------------------------------
Confidence            7888889999999999999999998777777778999999975422                                  


Q ss_pred             EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV  320 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i  320 (639)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T 1thm_A          188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV  400 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~  400 (639)
                                                        +.++.||++||.+        ||+|||++|+++++           
T Consensus       188 ----------------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~-----------  214 (279)
T 1thm_A          188 ----------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYP-----------  214 (279)
T ss_dssp             ----------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEET-----------
T ss_pred             ----------------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeC-----------
Confidence                                              3678999999866        99999999999987           


Q ss_pred             CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCC
Q 006600          401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV  480 (639)
Q Consensus       401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~i  480 (639)
                            .+.|..++|||||||||||++|||  ++|.+++++||++|++||+++...+               ..||+|+|
T Consensus       215 ------~~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~---------------~~~G~G~v  271 (279)
T 1thm_A          215 ------TSTYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG---------------TYWAKGRV  271 (279)
T ss_dssp             ------TTEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT---------------TTBSSEEC
T ss_pred             ------CCCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC---------------ccccCCee
Confidence                  578999999999999999999999  5799999999999999999763221               36899999


Q ss_pred             CcCCcCC
Q 006600          481 DPNKAMD  487 (639)
Q Consensus       481 d~~~A~~  487 (639)
                      |+.+|++
T Consensus       272 n~~~A~~  278 (279)
T 1thm_A          272 NAYKAVQ  278 (279)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhc
Confidence            9999875

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=100.00  E-value=1.9e-48  Score=399.08  Aligned_cols=214  Identities=32%  Similarity=0.429  Sum_probs=185.2

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSS  151 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~  151 (639)
                      .|..||||||||||+|...         ...+.||||+|+|+.+|++...+.+..++++++|+|+++++++|||||||..
T Consensus        59 ~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~  129 (281)
T 1to2_E           59 QDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP  129 (281)
T ss_dssp             CCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred             CCCCCcHHHHHHHHhccCC---------CCcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCC
Confidence            5789999999999999731         2246899999999999999876677889999999999999999999999987


Q ss_pred             CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC----CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEee
Q 006600          152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP----QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFY  227 (639)
Q Consensus       152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~  227 (639)
                      .     ....+..+++++.++|++||+||||+|...    ...+...|++|+|||++..                     
T Consensus       130 ~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------------------  183 (281)
T 1to2_E          130 S-----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS---------------------  183 (281)
T ss_dssp             C-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------------------
T ss_pred             C-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC---------------------
Confidence            4     346788889999999999999999999752    3345566889999975321                     


Q ss_pred             cCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCC
Q 006600          228 NGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTK  307 (639)
Q Consensus       228 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~  307 (639)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (281)
T 1to2_E          184 --------------------------------------------------------------------------------  183 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEec
Q 006600          308 DVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILAS  387 (639)
Q Consensus       308 ~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa  387 (639)
                                                                     +.++.||++||.+        ||+|||++|+++
T Consensus       184 -----------------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~  208 (281)
T 1to2_E          184 -----------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQST  208 (281)
T ss_dssp             -----------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEE
T ss_pred             -----------------------------------------------CCcCCcCCCCCCc--------eEEecCCCeEee
Confidence                                                           3678999999965        999999999999


Q ss_pred             cCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCC
Q 006600          388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPH  467 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~  467 (639)
                      ++                 ++.|..++|||||||||||++|||+|++|+|++++||++|++||+++.             
T Consensus       209 ~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-------------  258 (281)
T 1to2_E          209 LP-----------------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-------------  258 (281)
T ss_dssp             ET-----------------TTEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-------------
T ss_pred             cC-----------------CCCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-------------
Confidence            87                 578999999999999999999999999999999999999999999652             


Q ss_pred             CCCCCCCCCCCCCCcCCcCCC
Q 006600          468 KQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       468 ~~~~~~~~G~G~id~~~A~~~  488 (639)
                         +++.||+|+||+.+|++.
T Consensus       259 ---~~~~~G~G~v~~~~a~~~  276 (281)
T 1to2_E          259 ---DSFYYGKGLINVQAAAQH  276 (281)
T ss_dssp             ---CHHHHTTCBCCHHHHTSS
T ss_pred             ---CCCCcccceecHHHHhhh
Confidence               345799999999999985

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=100.00  E-value=2.1e-49  Score=407.14  Aligned_cols=223  Identities=24%  Similarity=0.221  Sum_probs=185.7

Q ss_pred             CCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC-CCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006600           73 DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP-GGCSSADLLAAFDDATFDGVDVISLSLGSS  151 (639)
Q Consensus        73 D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~-~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~  151 (639)
                      |.+||||||||||+|+..          ..+.||||+|+|+.+|++.+. +.....+++++|+||++++++|||||||..
T Consensus        47 ~~~gHGT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~  116 (282)
T 3zxy_A           47 FMSAHGTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGEL  116 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEE
T ss_pred             CCCCcccceeehhhccCC----------ceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccc
Confidence            467999999999999742          235899999999999998654 466788899999999999999999999976


Q ss_pred             CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcC
Q 006600          152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKE  231 (639)
Q Consensus       152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  231 (639)
                      . .....+..+..++.++.++|+++|+||||+|......+...+++|+|||++.+                         
T Consensus       117 ~-~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------  170 (282)
T 3zxy_A          117 T-DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH-------------------------  170 (282)
T ss_dssp             E-SSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------------
T ss_pred             c-ccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------------
Confidence            4 22234566788889999999999999999998877777888999999975422                         


Q ss_pred             CCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCc
Q 006600          232 DLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHF  311 (639)
Q Consensus       232 ~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~  311 (639)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (282)
T 3zxy_A          171 --------------------------------------------------------------------------------  170 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCC
Q 006600          312 SFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPV  391 (639)
Q Consensus       312 ~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~  391 (639)
                                                                 +.++.||+||+..     .||||+|||++|+++++  
T Consensus       171 -------------------------------------------~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~--  200 (282)
T 3zxy_A          171 -------------------------------------------GHPLDFSNWGSTY-----EQQGILAPGEDILGAKP--  200 (282)
T ss_dssp             -------------------------------------------SCBCSSSCCCHHH-----HHHEEEEECSSEEEECT--
T ss_pred             -------------------------------------------CccccccCCCCCc-----cccceeccCcceeeecC--
Confidence                                                       4677899998653     68899999999999987  


Q ss_pred             CCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC----CCCCHHHHHHHHHhcCccCCcCCccccccCCCC
Q 006600          392 SNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH----PTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPH  467 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~  467 (639)
                                     ++.|..++|||||||||||++|||+|++    |.++++|||++|++||++++.           .
T Consensus       201 ---------------~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~-----------~  254 (282)
T 3zxy_A          201 ---------------GGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDD-----------D  254 (282)
T ss_dssp             ---------------TSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------------
T ss_pred             ---------------CCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCC-----------C
Confidence                           5789999999999999999999999875    789999999999999996532           2


Q ss_pred             CCCCCCCCCCCCCCcCCcCC
Q 006600          468 KQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       468 ~~~~~~~~G~G~id~~~A~~  487 (639)
                      .+.....+|+|+||+.+|++
T Consensus       255 ~~~~~~~~G~G~ln~~~A~~  274 (282)
T 3zxy_A          255 APEQARRCLAGRLNVSGAFT  274 (282)
T ss_dssp             ----CGGGTTCBCCHHHHHH
T ss_pred             CCCccCceeeeEeCHHHHHH
Confidence            23345579999999999986

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=100.00  E-value=4.3e-48  Score=404.74  Aligned_cols=247  Identities=27%  Similarity=0.333  Sum_probs=200.9

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+                           +++.+++|..++..           +..++.|..|||||
T Consensus        48 iDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~~-----------~~~~~~d~~gHGT~   89 (327)
T 2x8j_A           48 IDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYGG-----------DETNFSDNNGHGTH   89 (327)
T ss_dssp             EESCCCTTCTTTGG---------------------------GEEEEEECSSGGGG-----------CTTCCCCSSSHHHH
T ss_pred             EcCCCCCCChhHhh---------------------------cccCCccccCCCCC-----------CCCCCCCCCCchHH
Confidence            79999999999954                           34556677655321           11245688999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh------CCCcEEEEccCCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF------DGVDVISLSLGSSLPL  154 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~------~g~dVIn~SlG~~~~~  154 (639)
                      |||||+|...         +..+.||||+|+|+.+|++...+.+..+++++||+||++      .+++|||||||...  
T Consensus        90 VAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S~G~~~--  158 (327)
T 2x8j_A           90 VAGTVAAAET---------GSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT--  158 (327)
T ss_dssp             HHHHHHCCCC---------SSBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEECEEBSC--
T ss_pred             HHHHHhccCC---------CCCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEECCCcCC--
Confidence            9999999841         224689999999999999987667788999999999999      89999999999873  


Q ss_pred             CCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-----CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          155 STYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-----QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       155 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                         ....+..+++++.++|++||+||||+|...     ...+...+++|+|||++.+                       
T Consensus       159 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~-----------------------  212 (327)
T 2x8j_A          159 ---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD-----------------------  212 (327)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT-----------------------
T ss_pred             ---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC-----------------------
Confidence               346688888999999999999999999652     3445567899999975422                       


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (327)
T 2x8j_A          213 --------------------------------------------------------------------------------  212 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS  389 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~  389 (639)
                                                                   +.++.||++||.+        ||+|||++|+++++
T Consensus       213 ---------------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~~~  239 (327)
T 2x8j_A          213 ---------------------------------------------LRLSDFTNTNEEI--------DIVAPGVGIKSTYL  239 (327)
T ss_dssp             ---------------------------------------------CCBSCC---CCCC--------SEEEECSSEEEECS
T ss_pred             ---------------------------------------------CCCCCccCCCCCc--------eEecCcCceEeecC
Confidence                                                         4678999999855        99999999999987


Q ss_pred             CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCccCCcCCccccccC
Q 006600          390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI-----HPTWSPAAIKSAIVTTASLKDEYAQSIVAEG  464 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~  464 (639)
                                       ++.|..++|||||||||||++|||+|+     +|.|++.+||++|++||+++.          
T Consensus       240 -----------------~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g----------  292 (327)
T 2x8j_A          240 -----------------DSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG----------  292 (327)
T ss_dssp             -----------------TTCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS----------
T ss_pred             -----------------CCCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC----------
Confidence                             578999999999999999999999999     999999999999999999652          


Q ss_pred             CCCCCCCCCCCCCCCCCcCCcCC
Q 006600          465 APHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       465 ~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                           ++...||+|+||+.+|++
T Consensus       293 -----~~~~~~G~G~vd~~~A~~  310 (327)
T 2x8j_A          293 -----FTAQAEGNGFLTLDLVER  310 (327)
T ss_dssp             -----SCHHHHTTCEECTTHHHH
T ss_pred             -----CCCCceeeeEECHHHHHH
Confidence                 235579999999999987

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-47  Score=445.55  Aligned_cols=353  Identities=26%  Similarity=0.258  Sum_probs=243.4

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHh-----CCCcEE
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG--CSSADLLAAFDDATF-----DGVDVI  144 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~--~~~~~i~~ai~~a~~-----~g~dVI  144 (639)
                      .|++||||||||||||.. +        +..+.||||+|+|+.+|+++....  .....++++|.+|++     .|++||
T Consensus       267 ~D~~GHGThVAGIIAa~~-N--------~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI  337 (1354)
T 3lxu_X          267 GMSSPHGTHVSSIASGNH-S--------SRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI  337 (1354)
T ss_dssp             ECCCHHHHHHHHHHCCCC-S--------SSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CCCCCcHHHHHHHHhcCC-C--------CCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence            478999999999999985 2        234689999999999999976422  256778888888887     799999


Q ss_pred             EEccCCCCCCCCCccchHHHHHHHhH-hCCcEEEEeccCCCCCCCcc--cC--CCCcEEEEEeeccCCccceEEEeCCce
Q 006600          145 SLSLGSSLPLSTYVDDIISIGSFHAV-AKGISVVCSAGNSGPYPQTV--IN--TAPWVITVAASTIDRAFPTAITMGNNQ  219 (639)
Q Consensus       145 n~SlG~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~~--~~--~ap~vitVgA~~~~~~~~~~~~~~~~~  219 (639)
                      |||||....  ....+.+..++.++. ++|++||+||||+|+...++  +.  .++++|+|||++...........    
T Consensus       338 NmS~G~~~~--~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~----  411 (1354)
T 3lxu_X          338 NMSYGEHAN--WSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM----  411 (1354)
T ss_dssp             EECCCCCCS--CSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC--------
T ss_pred             EcCCccCCC--CCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc----
Confidence            999999851  133467778888886 89999999999999865544  33  36999999997644211000000    


Q ss_pred             EEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEE
Q 006600          220 TVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGL  299 (639)
Q Consensus       220 ~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~  299 (639)
                                                                                                      
T Consensus       412 --------------------------------------------------------------------------------  411 (1354)
T 3lxu_X          412 --------------------------------------------------------------------------------  411 (1354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEc
Q 006600          300 IFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAA  379 (639)
Q Consensus       300 i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A  379 (639)
                                                                        .....+.++.|||+||+.  ++++||||+|
T Consensus       412 --------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaA  439 (1354)
T 3lxu_X          412 --------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCA  439 (1354)
T ss_dssp             --------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEE
T ss_pred             --------------------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEe
Confidence                                                              001125789999999998  8999999999


Q ss_pred             CCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccCCc
Q 006600          380 PGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDE  455 (639)
Q Consensus       380 PG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~  455 (639)
                      ||++|+++....               .+.|..++|||||||||||++|||++    .+|+|++.+||++|++||+++. 
T Consensus       440 PG~~I~St~~~~---------------~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~-  503 (1354)
T 3lxu_X          440 PGGAIASVPQFT---------------MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG-  503 (1354)
T ss_dssp             EC------------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCT-
T ss_pred             cCceEEEeecCC---------------CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCC-
Confidence            999999876532               47899999999999999999999986    7999999999999999999652 


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCCcCCcCCCCeeeeCcccchhhhhhcCCCCcc-ceeecccCcccccCCCccccccC
Q 006600          456 YAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNS-AISLMNRASTTCNDKSTKFLVNL  534 (639)
Q Consensus       456 ~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  534 (639)
                                   ..+++.||+|+||+.+|++..+.++..+.+++.|+|..+.... .|-+  +.               
T Consensus       504 -------------~~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIyl--R~---------------  553 (1354)
T 3lxu_X          504 -------------YVDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHL--RQ---------------  553 (1354)
T ss_dssp             -------------TSCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEE--CS---------------
T ss_pred             -------------CCCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEE--ec---------------
Confidence                         1345689999999999999988999999999999999874322 1111  10               


Q ss_pred             CcCeEEecccCccEEEEEEEE----EcC---C-CCeeEE--EEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecC
Q 006600          535 NLPSITIPELKKSITVSRQVT----NVS---P-MNSVYT--ARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRV  604 (639)
Q Consensus       535 n~ps~~~~~~~~~~~~~~tvt----n~~---~-~~~ty~--~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~  604 (639)
                        +     ......+++++|+    |..   . ....|.  +.+...+ --|++ |..|.+  .++.++|.|.++.... 
T Consensus       554 --~-----~~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~~-p~~l~l--~~~~r~~~v~vDp~~L-  621 (1354)
T 3lxu_X          554 --G-----VQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQC-GAFLDL--SYGTRSIAVRVDPTGL-  621 (1354)
T ss_dssp             --S-----CCCSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEEE-CSCEEC--TTSCEEEEEEECGGGC-
T ss_pred             --c-----ccCCceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Cceec-ccceee--cCCCceEEEEECCCCC-
Confidence              0     0112333333332    211   1 111122  2222111 12332 666766  4778899999986544 


Q ss_pred             CCceEEEEEEEEc-----CceEEEEeEEEE
Q 006600          605 QGRYSFGNLFWED-----GIHVVRIPLIVR  629 (639)
Q Consensus       605 ~~~~~~G~i~~~~-----~~~~v~~P~~~~  629 (639)
                      ..+..++.|...|     ..+..|+|+-|-
T Consensus       622 ~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~  651 (1354)
T 3lxu_X          622 QPGVHSAVIRAYDTDCVQKGSLFEIPVTVV  651 (1354)
T ss_dssp             CSEEEEEEEEEEESSCTTSCCSEEEEEEEE
T ss_pred             CCcceeEEEEEEEcCCcccCceEEeeEEEE
Confidence            5567899998877     258899999765

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=100.00  E-value=2.3e-48  Score=417.74  Aligned_cols=248  Identities=29%  Similarity=0.364  Sum_probs=205.4

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.++                           +..+++|..+...          .+..++.|..|||||
T Consensus       111 iDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~----------~~~~~~~d~~gHGT~  153 (395)
T 2z2z_A          111 LDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS----------TKLRDCADQNGHGTH  153 (395)
T ss_dssp             EESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB----------CCHHHHBCSSSHHHH
T ss_pred             EcCCCCCCChhHhhc---------------------------cccCccccCCccc----------CCCCCCCCCCCCHHH
Confidence            799999999999653                           3344555433110          001124678999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC--------------------C
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD--------------------G  140 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~--------------------g  140 (639)
                      |||||+|.. +        ...+.||||+|+|+.+|+++..+.+..+++++||+||+++                    +
T Consensus       154 vAgiia~~~-n--------~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  224 (395)
T 2z2z_A          154 VIGTIAALN-N--------DIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA  224 (395)
T ss_dssp             HHHHHHCCC-S--------SSSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCC
T ss_pred             HHHHHHeec-C--------CCceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccccccCCC
Confidence            999999973 1        2245899999999999999876667889999999999988                    9


Q ss_pred             CcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceE
Q 006600          141 VDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQT  220 (639)
Q Consensus       141 ~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~  220 (639)
                      ++|||||||...     ....+..++.++.++|++||+||||+|......+...+++|+|||++.+              
T Consensus       225 ~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------  285 (395)
T 2z2z_A          225 AEVISMSLGGPA-----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN--------------  285 (395)
T ss_dssp             CSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------
T ss_pred             CeEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC--------------
Confidence            999999999873     2456788889999999999999999998777777788999999985422              


Q ss_pred             EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006600          221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI  300 (639)
Q Consensus       221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i  300 (639)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (395)
T 2z2z_A          286 --------------------------------------------------------------------------------  285 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcC
Q 006600          301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAP  380 (639)
Q Consensus       301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP  380 (639)
                                                                            +.++.||++||          +|+||
T Consensus       286 ------------------------------------------------------~~~a~fS~~G~----------~v~AP  301 (395)
T 2z2z_A          286 ------------------------------------------------------DNIASFSNRQP----------EVSAP  301 (395)
T ss_dssp             ------------------------------------------------------SCBCTTSCSSC----------SEEEE
T ss_pred             ------------------------------------------------------CCCCcccCCCC----------CEEeC
Confidence                                                                  47789999997          67999


Q ss_pred             CCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCC-------------CCCHHHHHHHHH
Q 006600          381 GVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP-------------TWSPAAIKSAIV  447 (639)
Q Consensus       381 G~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-------------~ls~~~vk~~L~  447 (639)
                      |++|+|+++                 ++.|..++|||||||||||++|||+|++|             .|++.+||++|+
T Consensus       302 G~~i~s~~~-----------------~~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~  364 (395)
T 2z2z_A          302 GVDILSTYP-----------------DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILH  364 (395)
T ss_dssp             CSSEEEEET-----------------TTEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHH
T ss_pred             CCCeeeecC-----------------CCceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHH
Confidence            999999997                 57899999999999999999999999999             999999999999


Q ss_pred             hcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          448 TTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       448 ~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                      +||+++...             ..+..||+|+||+.+|++
T Consensus       365 ~tA~~~~~~-------------g~~~~~G~G~vd~~~A~~  391 (395)
T 2z2z_A          365 ITADDLGPT-------------GWDADYGYGVVRAALAVQ  391 (395)
T ss_dssp             HHSBCCSSS-------------SSBTTTBTCBCCHHHHHH
T ss_pred             hhccccCCC-------------CCCCCccCceeCHHHHHH
Confidence            999975321             234689999999999986

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=100.00  E-value=7.8e-47  Score=393.50  Aligned_cols=264  Identities=30%  Similarity=0.326  Sum_probs=209.3

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           +..+++|.....           .......|..|||||
T Consensus        33 iDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~-----------~~~~~~~d~~gHGT~   74 (310)
T 2ixt_A           33 LDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT-----------PINNSCTDRNGHGTH   74 (310)
T ss_dssp             EESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-----------CEETCCCCSSSHHHH
T ss_pred             EecCCCCCCHHHhhc---------------------------ccccccccCCCC-----------CCCCCCCCCCCCHHH
Confidence            799999999999553                           334456654311           111245678999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCC-----cEEEEccCCCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGV-----DVISLSLGSSLPLS  155 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-----dVIn~SlG~~~~~~  155 (639)
                      |||||+|....       +...+.||||+|+|+.+|++...+.+..+++++||+|++++++     +|||||||...   
T Consensus        75 vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~---  144 (310)
T 2ixt_A           75 VAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---  144 (310)
T ss_dssp             HHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS---
T ss_pred             HHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCC---
Confidence            99999998521       2234689999999999999987677889999999999999888     99999999873   


Q ss_pred             CCccchHHHHHHHhHhCCcEEEEeccCCCCCC--CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCC
Q 006600          156 TYVDDIISIGSFHAVAKGISVVCSAGNSGPYP--QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDL  233 (639)
Q Consensus       156 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~--~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  233 (639)
                        ....+..+++++.++|++||+||||+|...  ...+...+++|+|||+....                          
T Consensus       145 --~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~--------------------------  196 (310)
T 2ixt_A          145 --NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ--------------------------  196 (310)
T ss_dssp             --CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE--------------------------
T ss_pred             --CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc--------------------------
Confidence              346778888999999999999999999763  34455679999999854210                          


Q ss_pred             CceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccc
Q 006600          234 NKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSF  313 (639)
Q Consensus       234 ~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~  313 (639)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (310)
T 2ixt_A          197 --------------------------------------------------------------------------------  196 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCC--eeecccCCCCCCCC----CCCcCCceEcCCCcEEec
Q 006600          314 GVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISP--EVAFFSSRGPSSLS----PSVLKPDIAAPGVNILAS  387 (639)
Q Consensus       314 ~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~Gp~~~~----~~~~KPDI~APG~~I~sa  387 (639)
                                                             ..+  .++.||++||....    ..+.||||+|||++|+++
T Consensus       197 ---------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~  237 (310)
T 2ixt_A          197 ---------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYST  237 (310)
T ss_dssp             ---------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEE
T ss_pred             ---------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeee
Confidence                                                   002  67789999995421    123599999999999999


Q ss_pred             cCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCC
Q 006600          388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPH  467 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~  467 (639)
                      ++                 ++.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+.      ...
T Consensus       238 ~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~------~~a  294 (310)
T 2ixt_A          238 WY-----------------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG------YGA  294 (310)
T ss_dssp             CT-----------------TSSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS------TTC
T ss_pred             cC-----------------CCCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC------ccc
Confidence            87                 5789999999999999999999999999999999999999999998754321      123


Q ss_pred             CCCCCCCCCCCCCCc
Q 006600          468 KQADPFDYGGGHVDP  482 (639)
Q Consensus       468 ~~~~~~~~G~G~id~  482 (639)
                      .......+|+|++|+
T Consensus       295 ~~g~d~~~G~G~~~v  309 (310)
T 2ixt_A          295 AIGDDYASGFGFARV  309 (310)
T ss_dssp             CSSSBTTTBTCBCCC
T ss_pred             ccCCccccccceeec
Confidence            455667899999996

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=100.00  E-value=1.1e-47  Score=401.02  Aligned_cols=248  Identities=29%  Similarity=0.369  Sum_probs=204.0

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|+++                           +..+++|..+...          .+..+..|..|||||
T Consensus        36 iDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~----------~~~~~~~d~~gHGT~   78 (320)
T 2z30_A           36 LDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS----------TKLRDCADQNGHGTH   78 (320)
T ss_dssp             EESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB----------CCHHHHBCSSSHHHH
T ss_pred             ECCCCCCCChhHhcc---------------------------cccCccccCCccC----------CCCCCCCCCCCCHHH
Confidence            799999999999552                           3344555443110          001123578999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC--------------------C
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD--------------------G  140 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~--------------------g  140 (639)
                      |||||+|..         +...+.||||+|+|+.+|++...+.+..++++++|+||+++                    +
T Consensus        79 vAgiia~~~---------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  149 (320)
T 2z30_A           79 VIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDA  149 (320)
T ss_dssp             HHHHHHCCS---------SSBSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSCCTTCTTSCC
T ss_pred             HHHHHHccc---------CCCceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccccccccccccCC
Confidence            999999973         12245899999999999999876677889999999999987                    9


Q ss_pred             CcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceE
Q 006600          141 VDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQT  220 (639)
Q Consensus       141 ~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~  220 (639)
                      ++|||||||...     ....+..++.++.++|++||+||||+|......+...|++|+|||++.+              
T Consensus       150 ~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------  210 (320)
T 2z30_A          150 AEVISMSLGGPA-----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN--------------  210 (320)
T ss_dssp             CSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------
T ss_pred             ceEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC--------------
Confidence            999999999874     2456788888999999999999999998777777788999999985422              


Q ss_pred             EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006600          221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI  300 (639)
Q Consensus       221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i  300 (639)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (320)
T 2z30_A          211 --------------------------------------------------------------------------------  210 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcC
Q 006600          301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAP  380 (639)
Q Consensus       301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP  380 (639)
                                                                            +.++.||++||          +|+||
T Consensus       211 ------------------------------------------------------~~~~~~S~~g~----------~v~AP  226 (320)
T 2z30_A          211 ------------------------------------------------------DNIASFSNRQP----------EVSAP  226 (320)
T ss_dssp             ------------------------------------------------------SCBCTTSCSSC----------SEEEE
T ss_pred             ------------------------------------------------------CCcCcccCCCC----------CEEeC
Confidence                                                                  36788999987          78999


Q ss_pred             CCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHH
Q 006600          381 GVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH-------------PTWSPAAIKSAIV  447 (639)
Q Consensus       381 G~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------p~ls~~~vk~~L~  447 (639)
                      |++|+++++                 .+.|..++|||||||||||++|||+|++             |+|++.+||++|+
T Consensus       227 G~~i~s~~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~  289 (320)
T 2z30_A          227 GVDILSTYP-----------------DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILH  289 (320)
T ss_dssp             CSSEEEEET-----------------TTEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHH
T ss_pred             CCCeEEecc-----------------CCCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHH
Confidence            999999987                 5789999999999999999999999998             9999999999999


Q ss_pred             hcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          448 TTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       448 ~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                      +||+++..             +.....||+|+||+.+|++
T Consensus       290 ~ta~~~~~-------------~g~~~~~G~G~vd~~~A~~  316 (320)
T 2z30_A          290 ITADDLGP-------------TGWDADYGYGVVRAALAVQ  316 (320)
T ss_dssp             HHSBCCSS-------------SSSBTTTBTCBCCHHHHHH
T ss_pred             hhCccCCC-------------CCCCCCcCCceeCHHHHHH
Confidence            99997532             1234579999999999986

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=100.00  E-value=9.5e-48  Score=399.86  Aligned_cols=225  Identities=24%  Similarity=0.244  Sum_probs=188.3

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC-CCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP-GGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~-~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ..|..||||||||||+|+..          ..+.||||+|+|+.+|++.+. +......+++||+||++++++|||+|||
T Consensus        58 ~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g  127 (306)
T 4h6w_A           58 NGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAG  127 (306)
T ss_dssp             -CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeecccc
Confidence            34678999999999999742          245899999999999998653 5677888999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                      ... ........+..+++++.++|++||+||||+|......+...+++|+|||++..                       
T Consensus       128 ~~~-~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-----------------------  183 (306)
T 4h6w_A          128 QLT-DAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-----------------------  183 (306)
T ss_dssp             EEE-SSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-----------------------
T ss_pred             ccc-cCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-----------------------
Confidence            764 22244566888899999999999999999998777777778999999975422                       


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (306)
T 4h6w_A          184 --------------------------------------------------------------------------------  183 (306)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS  389 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~  389 (639)
                                                                   +.++.||++|+..     .||||+|||++|+++++
T Consensus       184 ---------------------------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~  213 (306)
T 4h6w_A          184 ---------------------------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKP  213 (306)
T ss_dssp             ---------------------------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECT
T ss_pred             ---------------------------------------------CCccccccccCCc-----CcceeecCCcCcccccC
Confidence                                                         3667889998643     68899999999999987


Q ss_pred             CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCccCCcCCccccccCC
Q 006600          390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI----HPTWSPAAIKSAIVTTASLKDEYAQSIVAEGA  465 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~  465 (639)
                                       ++.|..++|||||||||||++|||+++    +|.|+|+|||++|++||+++...+        
T Consensus       214 -----------------~~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~--------  268 (306)
T 4h6w_A          214 -----------------NGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD--------  268 (306)
T ss_dssp             -----------------TSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT--------
T ss_pred             -----------------CCceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC--------
Confidence                             578999999999999999999999864    699999999999999999764222        


Q ss_pred             CCCCCCCCCCCCCCCCcCCcCC
Q 006600          466 PHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       466 ~~~~~~~~~~G~G~id~~~A~~  487 (639)
                         ......||+|+||+.+|++
T Consensus       269 ---~~~~~~~G~G~ln~~~Av~  287 (306)
T 4h6w_A          269 ---TDDQSRCLMGKLNILDAIE  287 (306)
T ss_dssp             ---CSCGGGGTTCBCCHHHHHH
T ss_pred             ---CCCCCCcceeecCHHHHHH
Confidence               2334579999999999987

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=100.00  E-value=6.1e-47  Score=424.81  Aligned_cols=247  Identities=27%  Similarity=0.198  Sum_probs=193.1

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecC------CCCCCHHHHHHHHHHHHhCCCcE
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA------PGGCSSADLLAAFDDATFDGVDV  143 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~------~~~~~~~~i~~ai~~a~~~g~dV  143 (639)
                      ++.|..||||||||||||..+         +.++.||||+|+|+.+|+++.      .+....+.+++||+||+++|++|
T Consensus       193 d~~d~~gHGThVAGiIAa~~n---------g~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadV  263 (671)
T 1r6v_A          193 DSSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKV  263 (671)
T ss_dssp             BCCTTCSHHHHHHHHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSE
T ss_pred             CCccCCCcchhhhhhhhccCC---------CCceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCE
Confidence            345678999999999999741         224689999999999999976      13345677999999999999999


Q ss_pred             EEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCceEEE
Q 006600          144 ISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVV  222 (639)
Q Consensus       144 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~  222 (639)
                      ||||||...     ....+..++++|.++|++||+||||+|... ...+...|++|+|||++.+.               
T Consensus       264 IN~SlG~~~-----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g---------------  323 (671)
T 1r6v_A          264 MNHSWGGWG-----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG---------------  323 (671)
T ss_dssp             EEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET---------------
T ss_pred             EEeCCCCCC-----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCC---------------
Confidence            999999863     346788899999999999999999999764 45566779999999864321               


Q ss_pred             eEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEe
Q 006600          223 GQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFA  302 (639)
Q Consensus       223 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~  302 (639)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (671)
T 1r6v_A          324 --------------------------------------------------------------------------------  323 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCC
Q 006600          303 KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGV  382 (639)
Q Consensus       303 ~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~  382 (639)
                                                                        ....++.||++||..        ||+|||+
T Consensus       324 --------------------------------------------------~~~~~a~fSn~G~~v--------dv~APG~  345 (671)
T 1r6v_A          324 --------------------------------------------------GTFRVAGFSSRSDGV--------SVGAPGV  345 (671)
T ss_dssp             --------------------------------------------------TEEEECSSSCCCTTE--------EEEEECS
T ss_pred             --------------------------------------------------CceeeccccCCCCCe--------eEEecCC
Confidence                                                              001578999999987        9999999


Q ss_pred             cEEeccCCCCCCccCCCC-CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCcccc
Q 006600          383 NILASWSPVSNLEQTDHV-TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIV  461 (639)
Q Consensus       383 ~I~sa~~~~~~~~~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~  461 (639)
                      +|+|+++......-.... ......++.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...|    
T Consensus       346 ~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g----  421 (671)
T 1r6v_A          346 TILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG----  421 (671)
T ss_dssp             SEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS----
T ss_pred             CEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC----
Confidence            999998854211100000 000011458999999999999999999999999999999999999999999764222    


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcCCcCCCCeeeeCcc
Q 006600          462 AEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEV  496 (639)
Q Consensus       462 ~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~  496 (639)
                               ....||||+||+.+|++..|..+...
T Consensus       422 ---------~d~~~G~G~vna~~Al~~~l~~~~~~  447 (671)
T 1r6v_A          422 ---------WDHDTGYGLVKLDAALQGPLPTQGGV  447 (671)
T ss_dssp             ---------CBTTTBTCBCCHHHHHHCCCCSSSEE
T ss_pred             ---------CCCCcccceeCHHHHhhhhcCCCCCc
Confidence                     24579999999999999766555433

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=100.00  E-value=4.6e-47  Score=401.38  Aligned_cols=254  Identities=19%  Similarity=0.122  Sum_probs=201.2

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      |||||| +||+|.+.                           ++.+++|..+..          ......+.|..|||||
T Consensus        51 iDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~----------~~~~~~~~d~~gHGT~   92 (347)
T 2iy9_A           51 VDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS----------PFPVKKSEALYIHGTA   92 (347)
T ss_dssp             EESCCC-CCGGGTTC---------------------------EEEEEECBTTCC----------SSCCSSSHHHHHHHHH
T ss_pred             EcCCCc-CChhhhcC---------------------------cccCCcccCCCC----------CCCCCCCCCCCCcHHH
Confidence            799999 99999543                           344455654311          0111245678899999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC------CCcEEEEccCCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD------GVDVISLSLGSSLPL  154 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~dVIn~SlG~~~~~  154 (639)
                      |||||+|+.            ++.||||+|+|+.+|++...+..   ++++||+||+++      |++|||||||...  
T Consensus        93 vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~---~~~~ai~~a~~~~~~~~~~~~Vin~S~G~~~--  155 (347)
T 2iy9_A           93 MASLIASRY------------GIYGVYPHALISSRRVIPDGVQD---SWIRAIESIMSNVFLAPGEEKIINISGGQKG--  155 (347)
T ss_dssp             HHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT---HHHHHHHHHHTCTTSCTTEEEEEEESSCBCC--
T ss_pred             HHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH---HHHHHHHHHHhhhhcccCCceEEEeccccCC--
Confidence            999999871            24899999999999999763322   999999999999      9999999999873  


Q ss_pred             CCCccchHHHHHHHhHhCCcEEEEeccCCCCC-------CCcccCCCC----------cEEEEEeecc--CCccceEEEe
Q 006600          155 STYVDDIISIGSFHAVAKGISVVCSAGNSGPY-------PQTVINTAP----------WVITVAASTI--DRAFPTAITM  215 (639)
Q Consensus       155 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------~~~~~~~ap----------~vitVgA~~~--~~~~~~~~~~  215 (639)
                      .......+..++.++.++|++||+||||+|..       ....+...+          ++|+|||++.  +..       
T Consensus       156 ~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~-------  228 (347)
T 2iy9_A          156 VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGE-------  228 (347)
T ss_dssp             C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTS-------
T ss_pred             CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCc-------
Confidence            12356778889999999999999999999975       334555567          9999998654  110       


Q ss_pred             CCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCC
Q 006600          216 GNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSG  295 (639)
Q Consensus       216 ~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~G  295 (639)
                                     .                                                                
T Consensus       229 ---------------~----------------------------------------------------------------  229 (347)
T 2iy9_A          229 ---------------T----------------------------------------------------------------  229 (347)
T ss_dssp             ---------------C----------------------------------------------------------------
T ss_pred             ---------------e----------------------------------------------------------------
Confidence                           0                                                                


Q ss_pred             ceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCC
Q 006600          296 GVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKP  375 (639)
Q Consensus       296 a~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP  375 (639)
                                                                             ....+.++.||++||+       ||
T Consensus       230 -------------------------------------------------------~~~~~~~~~fS~~G~~-------~~  247 (347)
T 2iy9_A          230 -------------------------------------------------------PVLHGGGITGSRFGNN-------WV  247 (347)
T ss_dssp             -------------------------------------------------------CCBCCCSSSCBCBCTT-------TC
T ss_pred             -------------------------------------------------------ecccCCCCCCCCCCCC-------CC
Confidence                                                                   0001356799999994       67


Q ss_pred             ceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCc
Q 006600          376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDE  455 (639)
Q Consensus       376 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~  455 (639)
                      ||+|||++|+++++                 ++.|..++|||||||||||++|||+|++|+|++.+||++|++||+++..
T Consensus       248 di~APG~~i~s~~~-----------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~  310 (347)
T 2iy9_A          248 DIAAPGQNITFLRP-----------------DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPS  310 (347)
T ss_dssp             SEEEECSSEEEECT-----------------TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGG
T ss_pred             EEEeCCCCeEeecC-----------------CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCC
Confidence            99999999999998                 5789999999999999999999999999999999999999999997532


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCCcCCcCCC
Q 006600          456 YAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       456 ~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~  488 (639)
                      .              ....+|+|+||+.+|++.
T Consensus       311 ~--------------~~~~~G~G~ld~~~A~~~  329 (347)
T 2iy9_A          311 L--------------VDKVTEGRVLNAEKAISM  329 (347)
T ss_dssp             G--------------TTTSGGGEECCHHHHHHH
T ss_pred             C--------------CCccccCCEecHHHHHHH
Confidence            1              125899999999999983

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=100.00  E-value=1.3e-46  Score=414.37  Aligned_cols=222  Identities=26%  Similarity=0.293  Sum_probs=187.0

Q ss_pred             CCCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEc
Q 006600           68 FLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLS  147 (639)
Q Consensus        68 ~~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~S  147 (639)
                      ...+.|..||||||||||+|+.            .+.||||+|+|+++|+++. +.+...++++||+||+++|++|||||
T Consensus       192 ~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~-~~~~~~~i~~ai~~a~~~g~~Vin~S  258 (471)
T 3t41_A          192 VHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGS-KKTELLWVSKAIVQAANDGNQVINIS  258 (471)
T ss_dssp             TTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSS-SCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccC-CCCcHHHHHHHHHHHHhCCCCEEEeC
Confidence            3467889999999999999863            2589999999999999987 77889999999999999999999999


Q ss_pred             cCCCCC------CC-----CCccchHHHHHHHhHhCCcEEEEeccCCCCCCCc------------------ccCCCCcEE
Q 006600          148 LGSSLP------LS-----TYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT------------------VINTAPWVI  198 (639)
Q Consensus       148 lG~~~~------~~-----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~ap~vi  198 (639)
                      ||....      ..     ....+.+..+++++.++|++||+||||+|.....                  .+...+++|
T Consensus       259 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vi  338 (471)
T 3t41_A          259 VGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVV  338 (471)
T ss_dssp             CCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEE
T ss_pred             CCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeE
Confidence            997420      00     0123567888889999999999999999976432                  455678899


Q ss_pred             EEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeC
Q 006600          199 TVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQS  278 (639)
Q Consensus       199 tVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~  278 (639)
                      +|||++.+                                                                        
T Consensus       339 tVgA~~~~------------------------------------------------------------------------  346 (471)
T 3t41_A          339 TVGSTDQK------------------------------------------------------------------------  346 (471)
T ss_dssp             EEEEECTT------------------------------------------------------------------------
T ss_pred             EEEeeCCC------------------------------------------------------------------------
Confidence            99975422                                                                        


Q ss_pred             CCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeee
Q 006600          279 QFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVA  358 (639)
Q Consensus       279 ~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a  358 (639)
                                                                                                  +.++
T Consensus       347 ----------------------------------------------------------------------------~~~a  350 (471)
T 3t41_A          347 ----------------------------------------------------------------------------SNLS  350 (471)
T ss_dssp             ----------------------------------------------------------------------------SSBC
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        4678


Q ss_pred             cccCCCCCCCCCCCcCCceEcCCCc----------------------EEeccCCCCCCccCCCCCCCccCCCceeeeccc
Q 006600          359 FFSSRGPSSLSPSVLKPDIAAPGVN----------------------ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGT  416 (639)
Q Consensus       359 ~fSS~Gp~~~~~~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGT  416 (639)
                      .||++||+.       |||+|||++                      |+++++                 ++.|..++||
T Consensus       351 ~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~-----------------~~~~~~~sGT  406 (471)
T 3t41_A          351 EFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTAN-----------------NGRYIYQAGT  406 (471)
T ss_dssp             TTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECT-----------------TSSEEEECSH
T ss_pred             CccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCC-----------------CCCEEeecch
Confidence            999999963       499999987                      888887                 5789999999


Q ss_pred             cchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCC
Q 006600          417 SMSCPHISGIVALLKAIHP-TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       417 SmAaP~VAG~aALl~q~~p-~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~  488 (639)
                      |||||||||++|||+|++| .|+|++||++|++||.+..              ..+...||||+||+.+|++.
T Consensus       407 S~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~--------------~~~~~~~G~G~vd~~~Al~~  465 (471)
T 3t41_A          407 ALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKN--------------NKPFSRYGHGELDVYKALNV  465 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCS--------------CCCHHHHTTCBBCHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCC--------------CCCcCccccChhCHHHHHHH
Confidence            9999999999999999999 8999999999999999642              14456899999999999984

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=100.00  E-value=9.3e-46  Score=402.74  Aligned_cols=249  Identities=28%  Similarity=0.301  Sum_probs=192.6

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCC--CHHHHHHHHHHHHhCCCcEEEEc
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGC--SSADLLAAFDDATFDGVDVISLS  147 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~--~~~~i~~ai~~a~~~g~dVIn~S  147 (639)
                      ++.|..||||||||||+|+..           .+.||||+|+|+++|++...+..  ...++.++|++|+++|++|||||
T Consensus        61 ~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S  129 (434)
T 1wmd_A           61 NANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNS  129 (434)
T ss_dssp             CCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEEEec
Confidence            467889999999999998642           25799999999999999764433  45679999999999999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHh-HhCCcEEEEeccCCCCCCCc--ccCCCCcEEEEEeeccCCccceEEEeCCceEEEeE
Q 006600          148 LGSSLPLSTYVDDIISIGSFHA-VAKGISVVCSAGNSGPYPQT--VINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQ  224 (639)
Q Consensus       148 lG~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~  224 (639)
                      ||... ..  ..+....+++++ .++|++||+||||+|....+  .+..++++|+|||++..+..               
T Consensus       130 ~G~~~-~~--~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~---------------  191 (434)
T 1wmd_A          130 WGAAV-NG--AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS---------------  191 (434)
T ss_dssp             CCBCC-TT--CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG---------------
T ss_pred             CCCCc-CC--cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcc---------------
Confidence            99874 11  123455666665 58999999999999976443  44567999999997643200               


Q ss_pred             EeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecC
Q 006600          225 AFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKF  304 (639)
Q Consensus       225 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~  304 (639)
                            .                                                +..                      
T Consensus       192 ------~------------------------------------------------~~~----------------------  195 (434)
T 1wmd_A          192 ------F------------------------------------------------GSY----------------------  195 (434)
T ss_dssp             ------G------------------------------------------------CGG----------------------
T ss_pred             ------c------------------------------------------------Ccc----------------------
Confidence                  0                                                000                      


Q ss_pred             CCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcE
Q 006600          305 PTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNI  384 (639)
Q Consensus       305 ~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I  384 (639)
                                                                    ....+.++.||++||+.  ++++||||+|||++|
T Consensus       196 ----------------------------------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i  227 (434)
T 1wmd_A          196 ----------------------------------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFI  227 (434)
T ss_dssp             ----------------------------------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSE
T ss_pred             ----------------------------------------------cCCCCccccccCCCCCC--CCCCCceEEcCCCCe
Confidence                                                          01235889999999998  899999999999999


Q ss_pred             EeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcCccCCcCCcc
Q 006600          385 LASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTW-----SPAAIKSAIVTTASLKDEYAQS  459 (639)
Q Consensus       385 ~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l-----s~~~vk~~L~~TA~~~~~~g~p  459 (639)
                      +++++.........     ....+.|..++|||||||||||++|||+|++|++     ++++||++|++||+++.     
T Consensus       228 ~s~~~~~~~~~~~~-----~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~-----  297 (434)
T 1wmd_A          228 LSARSSLAPDSSFW-----ANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG-----  297 (434)
T ss_dssp             EEECCTTCCGGGSS-----EEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-----
T ss_pred             EecCCCCCCCcccc-----cCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC-----
Confidence            99986432110000     0004689999999999999999999999998875     89999999999998641     


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCcCCcCCCC
Q 006600          460 IVAEGAPHKQADPFDYGGGHVDPNKAMDPG  489 (639)
Q Consensus       460 ~~~~~~~~~~~~~~~~G~G~id~~~A~~~~  489 (639)
                              ...+...||||+||+.+|++..
T Consensus       298 --------~~~~~~~~G~G~vd~~~a~~~~  319 (434)
T 1wmd_A          298 --------LGYPNGNQGWGRVTLDKSLNVA  319 (434)
T ss_dssp             --------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred             --------CCCCCccCCcCeEeHHHhcccc
Confidence                    2345678999999999999754

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=100.00  E-value=3.9e-45  Score=385.76  Aligned_cols=227  Identities=27%  Similarity=0.260  Sum_probs=187.4

Q ss_pred             CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh----------
Q 006600           69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF----------  138 (639)
Q Consensus        69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~----------  138 (639)
                      .+..|..||||||||||+|...++        ..+.||||+|+|+.+|++...+ +...+++++|+||++          
T Consensus        96 ~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~~~~~~~  166 (340)
T 3lpc_A           96 KERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGRCG-GYDSDISDGLYWAAGGRIAGIPENR  166 (340)
T ss_dssp             GSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBTTB-CCHHHHHHHHHHHHTCCCTTSCCCS
T ss_pred             cCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecCCC-CcHHHHHHHHHHHhccccccccccc
Confidence            346788999999999999986432        2358999999999999998744 788999999999998          


Q ss_pred             CCCcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCC
Q 006600          139 DGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGN  217 (639)
Q Consensus       139 ~g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~  217 (639)
                      .+++|||||||...    .....+..+++++.++|++||+||||+|.... ..+...+++|+|||++..           
T Consensus       167 ~~~~Vin~S~G~~~----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-----------  231 (340)
T 3lpc_A          167 NPAKVINMSLGSDG----QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR-----------  231 (340)
T ss_dssp             SCCSEEEECCCEES----CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT-----------
T ss_pred             CCCeEEEeCcCCCC----CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC-----------
Confidence            89999999999863    34556778889999999999999999997643 345667899999975422           


Q ss_pred             ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006600          218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV  297 (639)
Q Consensus       218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~  297 (639)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (340)
T 3lpc_A          232 --------------------------------------------------------------------------------  231 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCce
Q 006600          298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDI  377 (639)
Q Consensus       298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI  377 (639)
                                                                               +.++.||++||.        |||
T Consensus       232 ---------------------------------------------------------~~~~~~S~~g~~--------~di  246 (340)
T 3lpc_A          232 ---------------------------------------------------------GIRASFSNYGVD--------VDL  246 (340)
T ss_dssp             ---------------------------------------------------------SSBCTTCCBSTT--------CCE
T ss_pred             ---------------------------------------------------------CCcCCCCCCCCC--------ceE
Confidence                                                                     467899999984        599


Q ss_pred             EcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHhcCccC
Q 006600          378 AAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI-H---PTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       378 ~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~ls~~~vk~~L~~TA~~~  453 (639)
                      +|||++|+++++......         . .+.|..++|||||||||||++|||+|+ +   |.|++++||++|++||+++
T Consensus       247 ~ApG~~i~s~~~~~~~~~---------~-~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~  316 (340)
T 3lpc_A          247 AAPGQDILSTVDSGTRRP---------V-SDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPF  316 (340)
T ss_dssp             EEECSSEEEEEESCSSSC---------C-SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCC
T ss_pred             EecCCCeecccCCCCcCC---------C-CCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcC
Confidence            999999999987532110         0 356999999999999999999999998 5   9999999999999999965


Q ss_pred             CcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCC
Q 006600          454 DEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       454 ~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~  488 (639)
                      .              ..+...||+|+||+.+|++.
T Consensus       317 ~--------------~~~~~~~G~G~vd~~~Av~~  337 (340)
T 3lpc_A          317 N--------------GRLDRALGSGIVDAEAAVNS  337 (340)
T ss_dssp             S--------------SCCSSCCCSSBCCHHHHHHH
T ss_pred             C--------------CCCCCCcccceecHHHHHHH
Confidence            2              12345899999999999874

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=100.00  E-value=3e-44  Score=368.02  Aligned_cols=218  Identities=27%  Similarity=0.381  Sum_probs=186.3

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           ++.+++|.+.               ..++.|..|||||
T Consensus        36 iDtGvd~~h~~l~~~---------------------------~~~~~~~~~~---------------~~~~~d~~gHGT~   73 (284)
T 1sh7_A           36 IDTGVNNNHEEFGGR---------------------------SVSGYDFVDN---------------DADSSDCNGHGTH   73 (284)
T ss_dssp             EESCCCTTCTTTTTC---------------------------EEEEEETTTT---------------BSCCCCSSSHHHH
T ss_pred             EcCCCCCCChhHcCC---------------------------ccccccccCC---------------CCCCCCCCCcHHH
Confidence            799999999999542                           3345566543               1246788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF--DGVDVISLSLGSSLPLSTYV  158 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~--~g~dVIn~SlG~~~~~~~~~  158 (639)
                      |||||+|..              .||||+|+|+.+|++...+.+..+++++||+|+++  .+++|||||||...      
T Consensus        74 vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~------  133 (284)
T 1sh7_A           74 VAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ------  133 (284)
T ss_dssp             HHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC------
T ss_pred             HHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC------
Confidence            999999873              69999999999999987677889999999999998  47999999999862      


Q ss_pred             cchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCcee
Q 006600          159 DDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFY  237 (639)
Q Consensus       159 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  237 (639)
                      ...+..+++++.++|++||+||||+|.... ..+...+++|+|||++.+                               
T Consensus       134 ~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------  182 (284)
T 1sh7_A          134 STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS-------------------------------  182 (284)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT-------------------------------
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC-------------------------------
Confidence            356888889999999999999999996542 345567899999975422                               


Q ss_pred             eeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccE
Q 006600          238 PIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPY  317 (639)
Q Consensus       238 pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~  317 (639)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (284)
T 1sh7_A          183 --------------------------------------------------------------------------------  182 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006600          318 IQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT  397 (639)
Q Consensus       318 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~  397 (639)
                                                           +.++.||++||.+        ||+|||++|+++++        
T Consensus       183 -------------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~--------  209 (284)
T 1sh7_A          183 -------------------------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWY--------  209 (284)
T ss_dssp             -------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECT--------
T ss_pred             -------------------------------------CCcCcccCCCCcc--------EEEeccCCeEEecC--------
Confidence                                                 4678999999976        99999999999987        


Q ss_pred             CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006600          398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~  453 (639)
                               .+.|..++|||||||||||++|||+|++|+|+++|||++|++||++.
T Consensus       210 ---------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~  256 (284)
T 1sh7_A          210 ---------DGGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN  256 (284)
T ss_dssp             ---------TSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred             ---------CCCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence                     47899999999999999999999999999999999999999999964

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=100.00  E-value=1.6e-44  Score=369.16  Aligned_cols=214  Identities=30%  Similarity=0.351  Sum_probs=183.8

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           +..+++|..                  ++.|..|||||
T Consensus        38 iDsGvd~~H~~l~~~---------------------------~~~~~~~~~------------------~~~d~~gHGT~   72 (279)
T 2pwa_A           38 IDTGIEASHPEFEGR---------------------------AQMVKTYYY------------------SSRDGNGHGTH   72 (279)
T ss_dssp             EESCCCTTCGGGTTC---------------------------EEEEEESSS------------------CSSCSSSHHHH
T ss_pred             EeCCCCCCChhHhCc---------------------------cccccCCCC------------------CCCCCCCCHHH
Confidence            799999999999553                           233455541                  34578999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCC-------cEEEEccCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGV-------DVISLSLGSSLP  153 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-------dVIn~SlG~~~~  153 (639)
                      |||||+|+.              .||||+|+|+.+|++...+.+..++++++|+|++++++       +|||||||..  
T Consensus        73 vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~--  136 (279)
T 2pwa_A           73 CAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG--  136 (279)
T ss_dssp             HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE--
T ss_pred             HHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC--
Confidence            999999862              69999999999999987677889999999999999887       9999999975  


Q ss_pred             CCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCC
Q 006600          154 LSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKED  232 (639)
Q Consensus       154 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  232 (639)
                          ..+.+..+++++.++|++||+||||+|.... ..+...|++|+|||++.+                          
T Consensus       137 ----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------------------  186 (279)
T 2pwa_A          137 ----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------------------  186 (279)
T ss_dssp             ----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------------------
T ss_pred             ----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC--------------------------
Confidence                2467888889999999999999999997543 345667999999975422                          


Q ss_pred             CCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCcc
Q 006600          233 LNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFS  312 (639)
Q Consensus       233 ~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~  312 (639)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T 2pwa_A          187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCC
Q 006600          313 FGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVS  392 (639)
Q Consensus       313 ~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~  392 (639)
                                                                +.++.||++||.+        ||+|||++|+++++   
T Consensus       187 ------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~---  213 (279)
T 2pwa_A          187 ------------------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWI---  213 (279)
T ss_dssp             ------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEET---
T ss_pred             ------------------------------------------CCcCCcCCCCCcc--------eEEEecCCeEEeec---
Confidence                                                      4678999999976        99999999999987   


Q ss_pred             CCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006600          393 NLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~  453 (639)
                                    .+.|..++|||||||||||++|||+|+ |++++.|||++|++||++.
T Consensus       214 --------------~~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~  259 (279)
T 2pwa_A          214 --------------GGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKG  259 (279)
T ss_dssp             --------------TTEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred             --------------CCCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence                          468999999999999999999999999 9999999999999999964

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=100.00  E-value=8.7e-44  Score=364.06  Aligned_cols=220  Identities=29%  Similarity=0.377  Sum_probs=186.3

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           +..+++|.++               ..++.|..|||||
T Consensus        38 iDtGid~~Hpdl~~~---------------------------~~~~~d~~~~---------------~~~~~d~~gHGT~   75 (278)
T 2b6n_A           38 IDTGVLNTHNEFGGR---------------------------ASSGYDFIDN---------------DYDATDCNGHGTH   75 (278)
T ss_dssp             EESCCCTTCGGGTTC---------------------------EEEEEETTTT---------------BSCCCCSSSHHHH
T ss_pred             EeCCCCCCChhHhcc---------------------------cccCeecCCC---------------CCCCCCCCCcHHH
Confidence            799999999999553                           2334566543               1246788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF--DGVDVISLSLGSSLPLSTYV  158 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~--~g~dVIn~SlG~~~~~~~~~  158 (639)
                      |||||+|..              .||||+|+|+.+|++.+.+.+..++++++|+|+++  .+++|||||||...      
T Consensus        76 vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~------  135 (278)
T 2b6n_A           76 VAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA------  135 (278)
T ss_dssp             HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC------
T ss_pred             HHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc------
Confidence            999999862              69999999999999987677889999999999997  59999999999863      


Q ss_pred             cchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCcee
Q 006600          159 DDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFY  237 (639)
Q Consensus       159 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  237 (639)
                      .+.+..+++++.++|++||+||||+|.... ..+...+++|+|||++.+                               
T Consensus       136 ~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------  184 (278)
T 2b6n_A          136 SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN-------------------------------  184 (278)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------------
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC-------------------------------
Confidence            356788889999999999999999997543 235567899999975422                               


Q ss_pred             eeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccE
Q 006600          238 PIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPY  317 (639)
Q Consensus       238 pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~  317 (639)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (278)
T 2b6n_A          185 --------------------------------------------------------------------------------  184 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006600          318 IQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT  397 (639)
Q Consensus       318 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~  397 (639)
                                                           +.++.||++||.+        ||+|||++|++++...      
T Consensus       185 -------------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~------  213 (278)
T 2b6n_A          185 -------------------------------------DSRSSFSNYGTCL--------DIYAPGSSITSSWYTS------  213 (278)
T ss_dssp             -------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS------
T ss_pred             -------------------------------------CCcCCcCCCCCCC--------eEEeCCCCeECcccCC------
Confidence                                                 3677899999865        9999999999998742      


Q ss_pred             CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006600          398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~  453 (639)
                               .+.|..++|||||||||||++|||+|++|+|++.|||++|++||++.
T Consensus       214 ---------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~  260 (278)
T 2b6n_A          214 ---------NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD  260 (278)
T ss_dssp             ---------TTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred             ---------CCCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence                     47899999999999999999999999999999999999999999864

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=100.00  E-value=1.3e-43  Score=362.86  Aligned_cols=219  Identities=28%  Similarity=0.373  Sum_probs=187.0

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           +...++|...                 ++.|..|||||
T Consensus        38 iDtGvd~~h~~l~~~---------------------------~~~~~~~~~~-----------------~~~d~~gHGT~   73 (276)
T 4dzt_A           38 IDTGIRTTHREFGGR---------------------------ARVGYDALGG-----------------NGQDCNGHGTH   73 (276)
T ss_dssp             EESCCCTTCGGGTTC---------------------------EEEEEETTSS-----------------CSCCSSSHHHH
T ss_pred             EccCCCCCChhHccC---------------------------eeccccCCCC-----------------CCCCCCCCHHH
Confidence            799999999999553                           2334455432                 45678999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD--GVDVISLSLGSSLPLSTYV  158 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~--g~dVIn~SlG~~~~~~~~~  158 (639)
                      |||||+|..              .||||+|+|+.+|++...+.....+++++|+|+++.  +++|||||||...      
T Consensus        74 vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~------  133 (276)
T 4dzt_A           74 VAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV------  133 (276)
T ss_dssp             HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC------
T ss_pred             HHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC------
Confidence            999999873              699999999999999877788999999999999986  9999999999762      


Q ss_pred             cchHHHHHHHhHhCCcEEEEeccCCCCCCCcc-cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCcee
Q 006600          159 DDIISIGSFHAVAKGISVVCSAGNSGPYPQTV-INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFY  237 (639)
Q Consensus       159 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  237 (639)
                      ...+..+++++.++|+++|+||||+|...... +...+++|+|||++.+                               
T Consensus       134 ~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------  182 (276)
T 4dzt_A          134 STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS-------------------------------  182 (276)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------------
T ss_pred             CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC-------------------------------
Confidence            46688888999999999999999999764433 5667889999975422                               


Q ss_pred             eeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccE
Q 006600          238 PIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPY  317 (639)
Q Consensus       238 pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~  317 (639)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (276)
T 4dzt_A          183 --------------------------------------------------------------------------------  182 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006600          318 IQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT  397 (639)
Q Consensus       318 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~  397 (639)
                                                           +.++.||++||..        ||+|||++|++++...      
T Consensus       183 -------------------------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~------  211 (276)
T 4dzt_A          183 -------------------------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTS------  211 (276)
T ss_dssp             -------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS------
T ss_pred             -------------------------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCC------
Confidence                                                 4778999999987        9999999999998753      


Q ss_pred             CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCC
Q 006600          398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKD  454 (639)
Q Consensus       398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~  454 (639)
                               ...|..++|||||||+|||++|||+|++|+|++++||++|++||++..
T Consensus       212 ---------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~  259 (276)
T 4dzt_A          212 ---------DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR  259 (276)
T ss_dssp             ---------SSCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred             ---------CCceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence                     468999999999999999999999999999999999999999999753

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=100.00  E-value=7.4e-43  Score=379.67  Aligned_cols=231  Identities=20%  Similarity=0.208  Sum_probs=177.8

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC------CCcE
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD------GVDV  143 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~dV  143 (639)
                      ++.|..||||||||||+|+.              .||||+|+|+.+|+++..+.+..+++++||+|+++.      +++|
T Consensus        67 ~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~V  132 (546)
T 2qtw_B           67 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV  132 (546)
T ss_dssp             -CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred             CCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeE
Confidence            45688999999999999873              699999999999999876677889999999999974      9999


Q ss_pred             EEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEEE
Q 006600          144 ISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTVV  222 (639)
Q Consensus       144 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~  222 (639)
                      ||||||..      ....+..+++++.++|++||+||||+|.... ..+...|++|+|||++.....             
T Consensus       133 INmSlGg~------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~-------------  193 (546)
T 2qtw_B          133 VLLPLAGG------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-------------  193 (546)
T ss_dssp             EEECEEEE------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-------------
T ss_pred             EEecCCCC------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-------------
Confidence            99999965      2457888899999999999999999997542 335667999999986543100             


Q ss_pred             eEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEe
Q 006600          223 GQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFA  302 (639)
Q Consensus       223 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~  302 (639)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (546)
T 2qtw_B          194 --------------------------------------------------------------------------------  193 (546)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCC
Q 006600          303 KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGV  382 (639)
Q Consensus       303 ~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~  382 (639)
                                                                         ...-..||++|+.+        ||+|||+
T Consensus       194 ---------------------------------------------------a~~s~~fSn~G~~v--------DI~APG~  214 (546)
T 2qtw_B          194 ---------------------------------------------------VTLGTLGTNFGRCV--------DLFAPGE  214 (546)
T ss_dssp             ---------------------------------------------------CEETTEECCBSTTC--------CEEEECS
T ss_pred             ---------------------------------------------------ccccCCcCCCCCcc--------eEEecCc
Confidence                                                               00001289999854        9999999


Q ss_pred             cEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccc
Q 006600          383 NILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVA  462 (639)
Q Consensus       383 ~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~  462 (639)
                      +|+++++..               ...|..++|||||||||||++|||+|++|+|+++|||++|++||.+.......+..
T Consensus       215 ~I~St~~~~---------------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~  279 (546)
T 2qtw_B          215 DIIGASSDC---------------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPE  279 (546)
T ss_dssp             SEEEECTTS---------------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCH
T ss_pred             cEEeeccCC---------------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCcc
Confidence            999998743               46799999999999999999999999999999999999999999864321110000


Q ss_pred             ---cCCC----CCCCCCCCCCCCC--CCcCCcCC
Q 006600          463 ---EGAP----HKQADPFDYGGGH--VDPNKAMD  487 (639)
Q Consensus       463 ---~~~~----~~~~~~~~~G~G~--id~~~A~~  487 (639)
                         .+..    ..+.....+|+|+  .++..+..
T Consensus       280 ~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s  313 (546)
T 2qtw_B          280 DQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS  313 (546)
T ss_dssp             HHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred             ccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence               0000    1122455678888  77776664

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=100.00  E-value=2.5e-42  Score=381.44  Aligned_cols=232  Identities=18%  Similarity=0.122  Sum_probs=180.6

Q ss_pred             CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006600           72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSS  151 (639)
Q Consensus        72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~  151 (639)
                      .|..||||||||||||...++        ..+.||||+|+|+.+|++..  .+...++++||+|+++++ +|||||||..
T Consensus        95 ~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~-~Iin~S~G~~  163 (503)
T 2id4_A           95 LSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN-DIYSCSWGPA  163 (503)
T ss_dssp             STTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-SEEEECEESC
T ss_pred             CCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-CEEEeCCCcC
Confidence            578899999999999986332        23589999999999999974  477889999999999998 9999999987


Q ss_pred             CCCCC--CccchHHHHHHHhH-----hCCcEEEEeccCCCCCCCc--ccC--CCCcEEEEEeeccCCccceEEEeCCceE
Q 006600          152 LPLST--YVDDIISIGSFHAV-----AKGISVVCSAGNSGPYPQT--VIN--TAPWVITVAASTIDRAFPTAITMGNNQT  220 (639)
Q Consensus       152 ~~~~~--~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~--~~~--~ap~vitVgA~~~~~~~~~~~~~~~~~~  220 (639)
                      ..+..  .....+..++.++.     .+|++||+||||+|.....  .+.  .++++|+|||++.+              
T Consensus       164 ~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~--------------  229 (503)
T 2id4_A          164 DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK--------------  229 (503)
T ss_dssp             CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT--------------
T ss_pred             CCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC--------------
Confidence            42111  12244666666666     4799999999999965332  222  45789999975422              


Q ss_pred             EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006600          221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI  300 (639)
Q Consensus       221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i  300 (639)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (503)
T 2id4_A          230 --------------------------------------------------------------------------------  229 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEc-
Q 006600          301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAA-  379 (639)
Q Consensus       301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A-  379 (639)
                                                                            +.++.||++||..        |++| 
T Consensus       230 ------------------------------------------------------~~~a~~S~~g~~~--------~~~a~  247 (503)
T 2id4_A          230 ------------------------------------------------------DLHPPYSEGCSAV--------MAVTY  247 (503)
T ss_dssp             ------------------------------------------------------SCCCTTCCCCTTE--------EEEEE
T ss_pred             ------------------------------------------------------CCcCCcCCCCCcc--------eEeec
Confidence                                                                  4677999999988        8887 


Q ss_pred             ---CCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcC
Q 006600          380 ---PGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEY  456 (639)
Q Consensus       380 ---PG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~  456 (639)
                         ||..|+++...                ++.|..++|||||||||||++|||+|++|+|++.+||.+|+.||++++..
T Consensus       248 ~~gpG~~I~st~~~----------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~  311 (503)
T 2id4_A          248 SSGSGEYIHSSDIN----------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN  311 (503)
T ss_dssp             CSBTTBCEEEECST----------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTC
T ss_pred             CCCCCCceEeecCC----------------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCC
Confidence               89999998543                47899999999999999999999999999999999999999999987533


Q ss_pred             -CccccccCCCCCCCCCCCCCCCCCCcCCcCCC
Q 006600          457 -AQSIVAEGAPHKQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       457 -g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~  488 (639)
                       .......  .........||||+||+++|++.
T Consensus       312 ~~~~~~~~--~~g~~~~~~~G~G~vda~~Av~~  342 (503)
T 2id4_A          312 ADGDWRDS--AMGKKYSHRYGFGKIDAHKLIEM  342 (503)
T ss_dssp             GGGCCEEC--SSSSEEBTTTBTCBCCHHHHHHH
T ss_pred             cCCCceec--CCCCccCcccCCcEecHHHHHHH
Confidence             1111111  11122345799999999999984

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=100.00  E-value=4.8e-43  Score=384.68  Aligned_cols=239  Identities=18%  Similarity=0.140  Sum_probs=183.0

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh-CCCcEEEEcc
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF-DGVDVISLSL  148 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~dVIn~Sl  148 (639)
                      .+.|..||||||||||||...++        ..+.||||+|+|+.+|++.    +...++++|++++++ ++++||||||
T Consensus        80 ~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~~~Vin~S~  147 (471)
T 1p8j_A           80 TQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASW  147 (471)
T ss_dssp             CTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECC
T ss_pred             CCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCCCeEEEecc
Confidence            45688999999999999975432        2358999999999999985    335789999999999 9999999999


Q ss_pred             CCCCCCCC--CccchHHHHHHHhHh-----CCcEEEEeccCCCCCCCc--c--cCCCCcEEEEEeeccCCccceEEEeCC
Q 006600          149 GSSLPLST--YVDDIISIGSFHAVA-----KGISVVCSAGNSGPYPQT--V--INTAPWVITVAASTIDRAFPTAITMGN  217 (639)
Q Consensus       149 G~~~~~~~--~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~ap~vitVgA~~~~~~~~~~~~~~~  217 (639)
                      |....+..  .....+..++.++.+     +|++||+||||+|.....  .  ...++++|+|||++.+           
T Consensus       148 G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~-----------  216 (471)
T 1p8j_A          148 GPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF-----------  216 (471)
T ss_dssp             BSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-----------
T ss_pred             CcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC-----------
Confidence            98642110  112334555555553     699999999999975332  1  2245889999975422           


Q ss_pred             ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006600          218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV  297 (639)
Q Consensus       218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~  297 (639)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (471)
T 1p8j_A          217 --------------------------------------------------------------------------------  216 (471)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCce
Q 006600          298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDI  377 (639)
Q Consensus       298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI  377 (639)
                                                                               +.++.||++||..  ....+|..
T Consensus       217 ---------------------------------------------------------g~~a~~S~~g~~~--~~~~~~~~  237 (471)
T 1p8j_A          217 ---------------------------------------------------------GNVPWYSEACSST--LATTYSSG  237 (471)
T ss_dssp             ---------------------------------------------------------SCCCTTCCBCTTC--CEEEECCC
T ss_pred             ---------------------------------------------------------CCcccccCCCCcc--eEEeCCCC
Confidence                                                                     4678999999987  55566677


Q ss_pred             EcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCC
Q 006600          378 AAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYA  457 (639)
Q Consensus       378 ~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g  457 (639)
                      .+||..|+++...                +..|..++|||||||||||++|||+|++|+|++++||++|++||++++...
T Consensus       238 ~~~g~~i~st~~~----------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~  301 (471)
T 1p8j_A          238 NQNEKQIVTTDLR----------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA  301 (471)
T ss_dssp             STTSCCEEEEETT----------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC
T ss_pred             CCCCCCEEEeeCC----------------CCccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCC
Confidence            7778899998763                467999999999999999999999999999999999999999999875432


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCcCCcCCC
Q 006600          458 QSIVAEGAPHKQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       458 ~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~  488 (639)
                      .....+  .........||||+||+.+|++.
T Consensus       302 ~~~~~n--~~g~~~~~~~G~G~vda~~Av~~  330 (471)
T 1p8j_A          302 DDWATN--GVGRKVSHSYGYGLLDAGAMVAL  330 (471)
T ss_dssp             SCCEEC--TTSCEEBTTTBTCBCCHHHHHHH
T ss_pred             CCceec--CCCcccCCCCCCEEEcHhHHHHH
Confidence            212111  11122456899999999999984

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=100.00  E-value=9.4e-43  Score=357.01  Aligned_cols=214  Identities=29%  Similarity=0.359  Sum_probs=183.2

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+.                           +...+.|..+                  ..|..|||||
T Consensus        39 iDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------------~~d~~gHGT~   73 (279)
T 3f7m_A           39 IDTGVEDTHPDFEGR---------------------------AKQIKSYAST------------------ARDGHGHGTH   73 (279)
T ss_dssp             EESCCCTTCGGGTTC---------------------------EEEEEECSSS------------------SSCSSSHHHH
T ss_pred             EcCCCCCCChhhccc---------------------------cccccCCCCC------------------CCCCCCcHHH
Confidence            799999999999553                           2334445332                  2278899999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCC-------CcEEEEccCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDG-------VDVISLSLGSSLP  153 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g-------~dVIn~SlG~~~~  153 (639)
                      |||||+|+.              .||||+|+|+.+|++...+.+..++++++|+|+++++       ++|||||||..  
T Consensus        74 vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~--  137 (279)
T 3f7m_A           74 CAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--  137 (279)
T ss_dssp             HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE--
T ss_pred             HHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC--
Confidence            999999863              6999999999999998877889999999999999876       89999999965  


Q ss_pred             CCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc-cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCC
Q 006600          154 LSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV-INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKED  232 (639)
Q Consensus       154 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  232 (639)
                          ..+.+..++.++.++|++||+||||+|...... +...+++|+|||++.+                          
T Consensus       138 ----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------------------  187 (279)
T 3f7m_A          138 ----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN--------------------------  187 (279)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------------------
T ss_pred             ----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC--------------------------
Confidence                346788888999999999999999999764433 5667899999975422                          


Q ss_pred             CCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCcc
Q 006600          233 LNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFS  312 (639)
Q Consensus       233 ~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~  312 (639)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T 3f7m_A          188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCC
Q 006600          313 FGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVS  392 (639)
Q Consensus       313 ~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~  392 (639)
                                                                +.++.||++||..        ||+|||++|+++++   
T Consensus       188 ------------------------------------------~~~~~~S~~g~~~--------di~ApG~~i~s~~~---  214 (279)
T 3f7m_A          188 ------------------------------------------DVRSTFSNYGRVV--------DIFAPGTSITSTWI---  214 (279)
T ss_dssp             ------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECG---
T ss_pred             ------------------------------------------CCCCCCCCCCCCC--------eEEECCCCeEeecC---
Confidence                                                      4678999999976        99999999999987   


Q ss_pred             CCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006600          393 NLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~  453 (639)
                                    .+.|..++|||||||+|||++|||+|++|+ ++++||++|++||++.
T Consensus       215 --------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~  260 (279)
T 3f7m_A          215 --------------GGRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKN  260 (279)
T ss_dssp             --------------GGCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEES
T ss_pred             --------------CCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccc
Confidence                          577999999999999999999999999999 9999999999999964

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=100.00  E-value=3.7e-44  Score=399.71  Aligned_cols=197  Identities=22%  Similarity=0.281  Sum_probs=0.0

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC------CCcE
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD------GVDV  143 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~dV  143 (639)
                      ++.|..||||||||||+|+.              .||||+|+|+++||+++.+.+..+++++||+|++++      |++|
T Consensus       219 ~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~V  284 (692)
T 2p4e_P          219 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV  284 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceE
Confidence            56789999999999999873              699999999999999876778889999999999986      8999


Q ss_pred             EEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCc-ccCCCCcEEEEEeeccCCccceEEEeCCceEEE
Q 006600          144 ISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT-VINTAPWVITVAASTIDRAFPTAITMGNNQTVV  222 (639)
Q Consensus       144 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~  222 (639)
                      ||||||+..      ...+..+++++.++|++||+||||+|..... .++..|++|+|||++.+..              
T Consensus       285 INmSlGg~~------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~--------------  344 (692)
T 2p4e_P          285 VLLPLAGGY------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQ--------------  344 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCCCCC------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCC--------------
Confidence            999999652      3567778888999999999999999976433 3556799999998653310              


Q ss_pred             eEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEe
Q 006600          223 GQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFA  302 (639)
Q Consensus       223 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~  302 (639)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (692)
T 2p4e_P          345 --------------------------------------------------------------------------------  344 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCC
Q 006600          303 KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGV  382 (639)
Q Consensus       303 ~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~  382 (639)
                                                                        ....-+.||+|||.        |||+|||+
T Consensus       345 --------------------------------------------------~a~~ss~fSn~G~~--------vDI~APG~  366 (692)
T 2p4e_P          345 --------------------------------------------------PVTLGTLGTNFGRC--------VDLFAPGE  366 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------ccccccccCCCCCc--------eeEEecCC
Confidence                                                              00001238999984        49999999


Q ss_pred             cEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006600          383 NILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK  453 (639)
Q Consensus       383 ~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~  453 (639)
                      +|+|+++..               .+.|..++|||||||||||++|||+|++|+|++++||++|++||.+.
T Consensus       367 ~I~St~~~~---------------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~  422 (692)
T 2p4e_P          367 DIIGASSDC---------------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD  422 (692)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cEEeeccCC---------------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence            999999742               36799999999999999999999999999999999999999999864

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=100.00  E-value=4.2e-41  Score=381.23  Aligned_cols=275  Identities=19%  Similarity=0.087  Sum_probs=168.6

Q ss_pred             CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHH-HHHHhCCCcEEEEccC
Q 006600           71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAF-DDATFDGVDVISLSLG  149 (639)
Q Consensus        71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai-~~a~~~g~dVIn~SlG  149 (639)
                      ..|.+||||||||||||.. +        +..+.||||+|+|+.+|++++.+.....+++.|+ +++..++++|||||||
T Consensus       109 ~~~~~gHGThVAGiIAa~~-n--------~~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G  179 (600)
T 3hjr_A          109 TDPDTAHGTSVSGIIAAVD-N--------AIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYG  179 (600)
T ss_dssp             CSTTCCHHHHHHHHHHCCS-S--------SSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCC
T ss_pred             CCCCCChHHHHHHHHhEeC-C--------CCCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccC
Confidence            3457899999999999863 1        1235899999999999999876777788877776 6677889999999999


Q ss_pred             CCCCCCCCccch----HHHHHHHh--HhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006600          150 SSLPLSTYVDDI----ISIGSFHA--VAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG  223 (639)
Q Consensus       150 ~~~~~~~~~~~~----~~~a~~~a--~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g  223 (639)
                      ............    +..++..+  ..+|+++|+||||.+.......      +.+.+....                 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~~g~~-----------------  236 (600)
T 3hjr_A          180 MSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNRTGNG-----------------  236 (600)
T ss_dssp             CCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEEESSC-----------------
T ss_pred             ccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------cccccCCCC-----------------
Confidence            764221122211    22222222  2689999999999874211000      000000000                 


Q ss_pred             EEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEec
Q 006600          224 QAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAK  303 (639)
Q Consensus       224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~  303 (639)
                                 ..                .....|.....  ......|                               
T Consensus       237 -----------~~----------------~~~~~~~~d~~--~~~~~~I-------------------------------  256 (600)
T 3hjr_A          237 -----------PK----------------LPFENSNLDPS--NSNFWNL-------------------------------  256 (600)
T ss_dssp             -----------CC----------------CCSSBTTSSGG--GGSSSEE-------------------------------
T ss_pred             -----------CC----------------CCcccccccCc--cccCcce-------------------------------
Confidence                       00                00001100000  0000000                               


Q ss_pred             CCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc
Q 006600          304 FPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN  383 (639)
Q Consensus       304 ~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~  383 (639)
                                                                 ++......+.++.||++|+..        +++|||..
T Consensus       257 -------------------------------------------sVgA~~~~g~~a~yS~~G~~v--------~~~apg~~  285 (600)
T 3hjr_A          257 -------------------------------------------VVSALNADGVRSSYSSVGSNI--------FLSATGGE  285 (600)
T ss_dssp             -------------------------------------------EEEEECTTSSBCTTCCBCTTC--------CEEEECCS
T ss_pred             -------------------------------------------EEeeecCCCCEeecccCCcce--------eeccCCCC
Confidence                                                       011122346888999999988        89999876


Q ss_pred             EE--------eccCCCCCCc---------cCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 006600          384 IL--------ASWSPVSNLE---------QTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAI  446 (639)
Q Consensus       384 I~--------sa~~~~~~~~---------~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L  446 (639)
                      +.        +..+......         ..............|..++|||||||||||++|||+|++|+|+++|||++|
T Consensus       286 ~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L  365 (600)
T 3hjr_A          286 YGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLL  365 (600)
T ss_dssp             CSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred             CCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            32        2222110000         000000000114678999999999999999999999999999999999999


Q ss_pred             HhcCccCCcCCcccccc---------------CC---CCCCCCCCCCCCCCCCcCCcCCC
Q 006600          447 VTTASLKDEYAQSIVAE---------------GA---PHKQADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       447 ~~TA~~~~~~g~p~~~~---------------~~---~~~~~~~~~~G~G~id~~~A~~~  488 (639)
                      ++||++++....|+...               ++   .....-...||||+||+.+|++.
T Consensus       366 ~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~  425 (600)
T 3hjr_A          366 ARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALEL  425 (600)
T ss_dssp             HHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred             HhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHH
Confidence            99999998766653211               00   11122245699999999999873

>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*

Probab=99.85  E-value=2.9e-21  Score=203.85  Aligned_cols=102  Identities=21%  Similarity=0.189  Sum_probs=78.9

Q ss_pred             eeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC--CCCccchHHHHHHHhHhCCcEEEEec
Q 006600          104 RGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF-DGVDVISLSLGSSLPL--STYVDDIISIGSFHAVAKGISVVCSA  180 (639)
Q Consensus       104 ~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AA  180 (639)
                      ..+||+|+++.|++... ..+..++++.+|+||++ ++++|||||||.....  .....+.+..++.+|..+||+||+||
T Consensus        90 g~~aP~a~~~~~~~~~~-~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As  168 (372)
T 1ga6_A           90 GSAGGAVQQLLFYMADQ-SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS  168 (372)
T ss_dssp             HHTTSCEEEEEEEEECT-TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             hhcCCCCcEEEEEeCCC-CCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence            44789999999999865 34677889999999998 8999999999976300  00122456777778889999999999


Q ss_pred             cCCCCCCC-------------cccCCCCcEEEEEeeccC
Q 006600          181 GNSGPYPQ-------------TVINTAPWVITVAASTID  206 (639)
Q Consensus       181 GN~G~~~~-------------~~~~~ap~vitVgA~~~~  206 (639)
                      ||+|...+             ..+...|+|++||+++..
T Consensus       169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~  207 (372)
T 1ga6_A          169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY  207 (372)
T ss_dssp             CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred             CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence            99996532             334567999999998654

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A

Probab=99.83  E-value=6.7e-21  Score=210.94  Aligned_cols=99  Identities=23%  Similarity=0.333  Sum_probs=78.3

Q ss_pred             ccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCc---cchHHHHHHHhHhCCc
Q 006600          101 GLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF---DGVDVISLSLGSSLPLSTYV---DDIISIGSFHAVAKGI  174 (639)
Q Consensus       101 ~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~~~~---~~~~~~a~~~a~~~Gi  174 (639)
                      ..+.||||+|+|+.|++.+     ..++++.+|+||++   ++++|||||||...  ..+.   ...+..++.+|..+||
T Consensus       272 ~~~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e--~~~~~~~~~~~~~~~~~a~~~Gi  344 (552)
T 1t1e_A          272 EVAGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPE--DSWAPASIAAMNRAFLDAAALGV  344 (552)
T ss_dssp             HHHHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEG--GGSCHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCc--ccCCHHHHHHHHHHHHHHHhCCe
Confidence            3568999999999999742     45789999999998   79999999999873  1111   2456777778889999


Q ss_pred             EEEEeccCCCCCC--------CcccCCCCcEEEEEeeccC
Q 006600          175 SVVCSAGNSGPYP--------QTVINTAPWVITVAASTID  206 (639)
Q Consensus       175 ~vV~AAGN~G~~~--------~~~~~~ap~vitVgA~~~~  206 (639)
                      +||+||||+|...        ...+...|+|++||+++..
T Consensus       345 ~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~  384 (552)
T 1t1e_A          345 TVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV  384 (552)
T ss_dssp             EEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred             EEEEecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence            9999999999643        2344567999999998643

>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*

Probab=99.02  E-value=7.8e-10  Score=121.57  Aligned_cols=101  Identities=17%  Similarity=0.143  Sum_probs=62.9

Q ss_pred             eeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH--hCCCcEEEEccCCCCCC-CCCccchHHHHHHHhHhCCcEEEEec
Q 006600          104 RGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT--FDGVDVISLSLGSSLPL-STYVDDIISIGSFHAVAKGISVVCSA  180 (639)
Q Consensus       104 ~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~--~~g~dVIn~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AA  180 (639)
                      .+++++..++.|-....  ....+.++..+++..  .+-++|||+|||..... ...+.+.+..++.++..+||.|++|+
T Consensus       262 ~a~~~~i~~~~~~~~g~--~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS  339 (544)
T 3edy_A          262 MSAGANISTWVYSSPGR--HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFAS  339 (544)
T ss_dssp             HHHSTTSEEEEECCCSC--CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             hccCCCceEEEEecCCc--ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            34555556555543211  112234455444443  35688999999987410 00112345566677889999999999


Q ss_pred             cCCCCCC----------CcccCCCCcEEEEEeeccC
Q 006600          181 GNSGPYP----------QTVINTAPWVITVAASTID  206 (639)
Q Consensus       181 GN~G~~~----------~~~~~~ap~vitVgA~~~~  206 (639)
                      ||+|...          ...++..|||++||+++..
T Consensus       340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l~  375 (544)
T 3edy_A          340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQ  375 (544)
T ss_dssp             CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEES
T ss_pred             CCCCccccCCCCCccccCCCcCCCCcEEEEeeeecc
Confidence            9999643          2345577999999998653

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}

Probab=98.72  E-value=6.3e-08  Score=91.24  Aligned_cols=91  Identities=13%  Similarity=0.163  Sum_probs=74.2

Q ss_pred             ccCccCCCCCCCcc-------ccccEEEEEeCCCc-chHHHHHHhhhcCCceEEEEecCCC-C-C---C--CccccccEE
Q 006600          254 SARSCESGTLNATL-------VRGKIVICFQSQFQ-RSAATAARTVLDSGGVGLIFAKFPT-K-D---V--HFSFGVPYI  318 (639)
Q Consensus       254 ~~~~c~~~~~~~~~-------~~gkivl~~~~~g~-~~~~~k~~~~~~~Ga~g~i~~~~~~-~-~---~--~~~~~ip~~  318 (639)
                      ....|.+.......       .++||+|++|  |. |+|.+|..+++++||.++||||+.. + .   +  +....||++
T Consensus        82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R--G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv  159 (194)
T 3icu_A           82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR--GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAI  159 (194)
T ss_dssp             CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES--CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEE
T ss_pred             CcCCCCCCccccCCcccccccCCCeEEEEEC--CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEE
Confidence            46789886543322       4789999999  98 9999999999999999999999742 1 1   1  233579999


Q ss_pred             EEchhhHHHHHHHHHhcCCcEEEEEece
Q 006600          319 QVDFAIGTSLLTYMEANRNPIVKFSFTK  346 (639)
Q Consensus       319 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~  346 (639)
                      +|+..+|+.|++++.++..++++|....
T Consensus       160 ~Is~~~G~~L~~~L~~G~~Vtvti~vg~  187 (194)
T 3icu_A          160 MIGNLKGTKILQSIQRGIQVTMVIEVGK  187 (194)
T ss_dssp             EECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence            9999999999999999988888877654

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=96.74  E-value=0.0059  Score=65.26  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----C--CccccccEEEEchhhHHHHHHHHH
Q 006600          263 LNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----V--HFSFGVPYIQVDFAIGTSLLTYME  333 (639)
Q Consensus       263 ~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~--~~~~~ip~~~i~~~~~~~l~~~~~  333 (639)
                      +...+++|||||+.+  |.|.|.+|..+++++||.|+|++++....    .  +....||...++.++++.|+..+.
T Consensus       108 ~~~~dv~GkIvlv~~--g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~  182 (421)
T 2ek8_A          108 VAGKDLNGKIALIQR--GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR  182 (421)
T ss_dssp             TTTSCCTTSEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred             cCCCCcCceEEEEeC--CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence            344589999999999  89999999999999999999999876433    1  134679999999999999999984

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=95.85  E-value=0.028  Score=60.29  Aligned_cols=80  Identities=14%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             CccccccEEEEEeCCCcch---------HHHH----HHhhhcCCceEEEEecCCCCC--------C--C-ccccccEEEE
Q 006600          265 ATLVRGKIVICFQSQFQRS---------AATA----ARTVLDSGGVGLIFAKFPTKD--------V--H-FSFGVPYIQV  320 (639)
Q Consensus       265 ~~~~~gkivl~~~~~g~~~---------~~~k----~~~~~~~Ga~g~i~~~~~~~~--------~--~-~~~~ip~~~i  320 (639)
                      ..+++|||||+.+  +.|.         +..|    ..+|.++||.|+|++++....        .  . ....||++.|
T Consensus       124 ~~dvkGKIVlv~~--~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I  201 (444)
T 3iib_A          124 AGSLNDKIAFIDA--KTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI  201 (444)
T ss_dssp             TTTTTTCEEEECC--CCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE
T ss_pred             ccccCccEEEEeC--CCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe
Confidence            4689999999988  6663         4444    457999999999999864321        1  1 2357999999


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEece
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTK  346 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~  346 (639)
                      +.++++.|+..+..+...++++....
T Consensus       202 s~~da~~L~~~l~~g~~~~v~l~~~~  227 (444)
T 3iib_A          202 SNPDADLINAMLKRDKEVVISLELGS  227 (444)
T ss_dssp             CHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred             cHHHHHHHHHHHhCCCCeEEEEEEee
Confidence            99999999999988776666665443

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=95.30  E-value=0.027  Score=62.94  Aligned_cols=66  Identities=23%  Similarity=0.160  Sum_probs=54.5

Q ss_pred             ccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-C-----------------C-----------------
Q 006600          266 TLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-V-----------------H-----------------  310 (639)
Q Consensus       266 ~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~-----------------~-----------------  310 (639)
                      .+++|||||+++  |.|.+.+|..+|+++||.|+|+|++..+. .                 +                 
T Consensus       128 vdv~GkIvlv~~--g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~  205 (640)
T 3kas_A          128 TPVNGSIVIVRA--GKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR  205 (640)
T ss_dssp             SCCTTSEEEEES--CSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCS
T ss_pred             cccCCcEEEEec--CCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccc
Confidence            579999999999  89999999999999999999999865321 0                 0                 


Q ss_pred             --ccccccEEEEchhhHHHHHHHHH
Q 006600          311 --FSFGVPYIQVDFAIGTSLLTYME  333 (639)
Q Consensus       311 --~~~~ip~~~i~~~~~~~l~~~~~  333 (639)
                        ....||+..|+.++++.|...+.
T Consensus       206 ~~~~p~IP~~~Is~~~a~~Ll~~l~  230 (640)
T 3kas_A          206 SSGLPNIPVQTISRAAAEKLFGNME  230 (640)
T ss_dssp             SCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred             ccCCCCCCEEecCHHHHHHHHHHcc
Confidence              01258999999999999987654

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=94.75  E-value=0.024  Score=64.10  Aligned_cols=68  Identities=21%  Similarity=0.268  Sum_probs=55.4

Q ss_pred             CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCC------------------C-----C------Cc----
Q 006600          265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTK------------------D-----V------HF----  311 (639)
Q Consensus       265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~------------------~-----~------~~----  311 (639)
                      ..+++|||||+++  |.|.+.+|..+|+++||.|+|+|+++.+                  .     .      .+    
T Consensus       150 ~~~v~GkIvlv~~--G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TP  227 (707)
T 3fed_A          150 GINCTGKIVIARY--GKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTP  227 (707)
T ss_dssp             CCCCTTCEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCT
T ss_pred             CCCCCCeEEEEEC--CCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCC
Confidence            4579999999999  8899999999999999999999985210                  0     0      00    


Q ss_pred             ------------------cccccEEEEchhhHHHHHHHHHh
Q 006600          312 ------------------SFGVPYIQVDFAIGTSLLTYMEA  334 (639)
Q Consensus       312 ------------------~~~ip~~~i~~~~~~~l~~~~~~  334 (639)
                                        ...||+.-|+..+++.|+..+..
T Consensus       228 G~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g  268 (707)
T 3fed_A          228 GYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG  268 (707)
T ss_dssp             TSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred             CCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence                              13689999999999999987753

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.73  E-value=0.1  Score=45.11  Aligned_cols=74  Identities=22%  Similarity=0.230  Sum_probs=53.1

Q ss_pred             CccEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEE-cCceEEE
Q 006600          545 KKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWE-DGIHVVR  623 (639)
Q Consensus       545 ~~~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~-~~~~~v~  623 (639)
                      +.+.+.+++|+|.|+.+..|++....    .++++|.+-++ ++|++..++|+|.+.   .-..+.+.+... ++...+.
T Consensus        40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~---~~g~~~~~l~v~~~~g~~~~  111 (122)
T 2ys4_A           40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQ---SVGDHSGRLIVCYDTGEKVF  111 (122)
T ss_dssp             SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCS---SSBCCCCBCEEEESSSCEEC
T ss_pred             CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcC---CCccEEEEEEEEECCCCEEE
Confidence            35788889999999999999877643    47889999888 579999999999864   223345554443 4444444


Q ss_pred             EeE
Q 006600          624 IPL  626 (639)
Q Consensus       624 ~P~  626 (639)
                      +++
T Consensus       112 v~L  114 (122)
T 2ys4_A          112 VSL  114 (122)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            444

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.66  E-value=0.79  Score=38.49  Aligned_cols=66  Identities=11%  Similarity=0.175  Sum_probs=46.8

Q ss_pred             CcCeEEeccc--CccEEEEEEEEEcCCCCeeEEEEEeC-CCCceEEEecCeEEEcCCCcEEEEEEEEEEe
Q 006600          535 NLPSITIPEL--KKSITVSRQVTNVSPMNSVYTARVQA-PAGTTVRVEPSTLTFNSTRKKLKFKVTFYSR  601 (639)
Q Consensus       535 n~ps~~~~~~--~~~~~~~~tvtn~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~  601 (639)
                      +...+-++.+  +...+.+++++|.|+.+..|++.... +.+..++++|..-.+ ++|++.+++|++.+.
T Consensus        13 ~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~   81 (112)
T 2e6j_A           13 NFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSI   81 (112)
T ss_dssp             SCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCC
T ss_pred             CcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECC
Confidence            3344444433  34677788999999999999984211 112357789999888 579999999999864

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=87.25  E-value=0.35  Score=51.66  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=26.9

Q ss_pred             cCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCC
Q 006600          352 QISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSP  390 (639)
Q Consensus       352 ~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~  390 (639)
                      ...+.++.||++|+..        ||+|||++|+++++.
T Consensus       181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~  211 (441)
T 1y9z_A          181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV  211 (441)
T ss_dssp             CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred             CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence            3457899999999876        999999999999874

>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}

Probab=85.53  E-value=4.1  Score=34.57  Aligned_cols=54  Identities=13%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             cEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEee
Q 006600          547 SITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRL  602 (639)
Q Consensus       547 ~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~  602 (639)
                      .-..++++.|....+.+|.++++..+++++. .+..+++ ++|+.+++.|.+.++.
T Consensus        32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~   85 (118)
T 2r39_A           32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP   85 (118)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred             EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence            3556778899999999999999877775543 3556777 5799999999998863

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=83.92  E-value=11  Score=33.01  Aligned_cols=83  Identities=11%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             ccEEEEEEEEEcCCCCeeEEEEEeCC----CCceEEEecCeEEEcCCCcEEEEEEEEEEeec----C-CC-ceEEEEEEE
Q 006600          546 KSITVSRQVTNVSPMNSVYTARVQAP----AGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLR----V-QG-RYSFGNLFW  615 (639)
Q Consensus       546 ~~~~~~~tvtn~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~----~-~~-~~~~G~i~~  615 (639)
                      ...+-+++|+|.|.-+.+|++.....    ..--++++|..-++ .+|++.+++|++.+.+.    . .+ .-++--|++
T Consensus        43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL  121 (140)
T 3qbt_B           43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL  121 (140)
T ss_dssp             CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred             eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence            45677789999999999999974321    12247788999888 67999999999987531    0 01 112344444


Q ss_pred             E-cCceEEEEeEEEE
Q 006600          616 E-DGIHVVRIPLIVR  629 (639)
Q Consensus       616 ~-~~~~~v~~P~~~~  629 (639)
                      . .++.+..+|+-..
T Consensus       122 ~Ve~G~d~fI~v~g~  136 (140)
T 3qbt_B          122 HLDRGKDYFLTISGN  136 (140)
T ss_dssp             EETTSCEEEEEEEEE
T ss_pred             EeecCCcEEEEEecc
Confidence            3 4567777777553

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=83.17  E-value=7.9  Score=36.74  Aligned_cols=80  Identities=11%  Similarity=0.020  Sum_probs=52.1

Q ss_pred             ccEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEc----C--c
Q 006600          546 KSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWED----G--I  619 (639)
Q Consensus       546 ~~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~----~--~  619 (639)
                      ...+.+++++|.|+.+.+++.. ..|....+...|..|   ++|++.+++|++.......-+...+.|.+..    +  .
T Consensus        19 ~~~~~~~~i~N~g~~pl~i~~~-~~p~~~~~~~~~~~I---~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~   94 (220)
T 2qsv_A           19 DEGVVRLVVNNTDESDLQVAVV-SLPSFVSLDDRAFRL---QAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKK   94 (220)
T ss_dssp             CCCEEEEEEEECSSSCEEEEEE-ECCTTEECSCCEEEE---CSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCE
T ss_pred             CcceEEEEEEeCCCCceEEEec-cCCCceEeeeCccee---CCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCcc
Confidence            3566688999999999888864 346665554444444   6799999999998653333345566666543    2  2


Q ss_pred             eEEEEeEEEE
Q 006600          620 HVVRIPLIVR  629 (639)
Q Consensus       620 ~~v~~P~~~~  629 (639)
                      ...++|+...
T Consensus        95 ~~~~i~v~g~  104 (220)
T 2qsv_A           95 AVDSVMVSLP  104 (220)
T ss_dssp             EEEEEEEEEE
T ss_pred             cccEEEEEEE
Confidence            3446666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	639
d1v6ca_	435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	3e-37
d1r6va_	671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	7e-13
d1r6va_	671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	0.001
d1gcia_	269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	8e-12
d1gcia_	269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	8e-06
d1p8ja2	334	c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou	1e-11
d1r0re_	274	c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls	2e-11
d1r0re_	274	c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls	4e-05
d2ixta1	309	c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus	4e-11
d1to2e_	281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	1e-10
d2id4a2	339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	1e-09
d1wmda2	318	c.41.1.1 (A:1-318) Alkaline serine protease kp-43,	5e-09
d2pwaa1	279	c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach	3e-07
d1dbia_	280	c.41.1.1 (A:) Thermostable serine protease {Bacill	2e-06
d1dbia_	280	c.41.1.1 (A:) Thermostable serine protease {Bacill	6e-05
d1thma_	279	c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar	2e-05
d1ga6a_	369	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse	9e-05
d1t1ga_	357	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac	0.001

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score =  142 bits (357), Expect = 3e-37
 Identities = 72/430 (16%), Positives = 151/430 (35%), Gaps = 55/430 (12%)

Query: 61  NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA 120
           N+S    +  P +   HGTH + T A  +  +   +G+           A + I K+   
Sbjct: 49  NNSGTGNWYQPGNNNAHGTHVAGTIAA-IANNEGVVGVMPN------QNANIHIVKVFNE 101

Query: 121 PGGCSSADLLAAFDDAT-FDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCS 179
            G   S+ L+AA D      G +V+++SLG S   +T  + + +  +   +     ++ +
Sbjct: 102 AGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGVL-----LIAA 156

Query: 180 AGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPI 239
           AGN+G    +   +   V++VAA   +          +   +         E +     +
Sbjct: 157 AGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI-----SGPGEAILSTVTV 211

Query: 240 VIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGL 299
                        G  R  +      +     +V    ++   S  + A   +++   G 
Sbjct: 212 -------------GEGRLADITIGGQSYFSNGVVPH--NRLTPSGTSYAPAPINASATGA 256

Query: 300 IFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAF 359
           +             G  +   + A    L+  +    +   + + TK          + +
Sbjct: 257 LAECTVN-------GTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVY 309

Query: 360 FSSRGPSSLSPSVL--KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTS 417
            +S  P   +P ++    DI  P V++  +       +     T +     +++  +GTS
Sbjct: 310 SNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTS 369

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGG 477
           M+ PH+SG+  L+ + HP  S + +++A+  TA                         G 
Sbjct: 370 MATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA-------------GRDNQTGY 416

Query: 478 GHVDPNKAMD 487
           G ++   A  
Sbjct: 417 GMINAVAAKA 426

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

 Score = 69.3 bits (168), Expect = 7e-13
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 361 SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFN-FKVESGTSMS 419
            +   +  S       + APGV IL++     ++    H           +    GTSM+
Sbjct: 324 GTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMA 383

Query: 420 CPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGH 479
            PH++G+VA+L    P   P  I+  +  TA   +                   D G G 
Sbjct: 384 APHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-------------GWDHDTGYGL 430

Query: 480 VDPNKAMDPGLVYDMEVSDY 499
           V  + A+   L     V ++
Sbjct: 431 VKLDAALQGPLPTQGGVEEF 450

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 46/263 (17%), Positives = 69/263 (26%), Gaps = 28/263 (10%)

Query: 71  PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP------GGC 124
                  GTH + T A                  G AP A +    I   P      G  
Sbjct: 194 SSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYV 244

Query: 125 SSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSA-GNS 183
               + A    AT  G  V++ S G            +     +A+  G+ +V SA  N+
Sbjct: 245 GDDYVAAGIIWATDHGAKVMNHSWGG-----WGYSYTMKEAFDYAMEHGVVMVVSAGNNT 299

Query: 184 GPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGK--EDLNKFYPIVI 241
                      P VI VAA              +    V            +     I  
Sbjct: 300 SDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGY 359

Query: 242 GKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIF 301
                   A  G       GT  A      +V     +F  +     R +L++       
Sbjct: 360 EGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF---- 415

Query: 302 AKFPTKDVHFSFGVPYIQVDFAI 324
             F         G   +++D A+
Sbjct: 416 -DFNGNGWDHDTGYGLVKLDAAL 437

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

 Score = 63.8 bits (154), Expect = 8e-12
 Identities = 34/140 (24%), Positives = 49/140 (35%), Gaps = 41/140 (29%)

Query: 347 TVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIP 406
            V     +   A FS  G           DI APGVN+                  +  P
Sbjct: 170 AVGATDQNNNRASFSQYGAG--------LDIVAPGVNV-----------------QSTYP 204

Query: 407 QFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAP 466
              +   +GTSM+ PH++G  AL+K  +P+WS   I++ +  TA                
Sbjct: 205 GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTA---------------- 248

Query: 467 HKQADPFDYGGGHVDPNKAM 486
                   YG G V+   A 
Sbjct: 249 TSLGSTNLYGSGLVNAEAAT 268

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

 Score = 45.7 bits (107), Expect = 8e-06
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 108 PLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSF 167
           P A L   K+  A G  S + +    + A  +G+ V +LSLGS  P +T    +      
Sbjct: 84  PSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV-----N 138

Query: 168 HAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFY 227
            A ++G+ VV ++GNSG    +        + V A+  +    +    G    +V     
Sbjct: 139 SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVN 198

Query: 228 NGKEDLNKFYPIVIGKDIAT 247
                    Y  + G  +AT
Sbjct: 199 VQSTYPGSTYASLNGTSMAT 218

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIV 447
            +  S  +    +    + Q   +  +GTS S P  +GI+AL    +   +   ++  +V
Sbjct: 231 TTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVV 290

Query: 448 TTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487
            T+      A      G   K +    YG G +D    + 
Sbjct: 291 QTSKPAHLNADDWATNGVGRKVSH--SYGYGLLDAGAMVA 328

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 33/128 (25%)

Query: 358 AFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTS 417
           A  S+   +S S    + ++ APG  +                  +  P   +   +GTS
Sbjct: 178 AVDSNSNRASFSSVGAELEVMAPGAGV-----------------YSTYPTNTYATLNGTS 220

Query: 418 MSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGG 477
           M+ PH++G  AL+ + HP  S + +++ + +TA+                     F YG 
Sbjct: 221 MASPHVAGAAALILSKHPNLSASQVRNRLSSTAT----------------YLGSSFYYGK 264

Query: 478 GHVDPNKA 485
           G ++   A
Sbjct: 265 GLINVEAA 272

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 10/173 (5%)

Query: 106 GAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIG 165
            AP   L   K+  + G  S + +++  + AT +G+DVI++S              +   
Sbjct: 83  VAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMS-----LGGASGSTAMKQA 137

Query: 166 SFHAVAKGISVVCSAGNSGPYPQTVI----NTAPWVITVAASTIDRAFPTAITMGNNQTV 221
             +A A+G+ VV +AGNSG    T           VI V A   +    +  ++G    V
Sbjct: 138 VDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEV 197

Query: 222 VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARS-CESGTLNATLVRGKIV 273
           +              Y  + G  +A+      +A    +   L+A+ VR ++ 
Sbjct: 198 MAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 250

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 23/108 (21%)

Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
             +I+APG ++ ++W                     +   SGTSM+ PH+SG+ A + A 
Sbjct: 224 DIEISAPGSSVYSTW-----------------YNGGYNTISGTSMATPHVSGLAAKIWAE 266

Query: 434 HPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVD 481
           +P+ S   ++S +   A   D       A G      D +  G G   
Sbjct: 267 NPSLSNTQLRSNLQERAKSVDIKGGYGAAIG------DDYASGFGFAR 308

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 33/114 (28%)

Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
           + D+ APGV+I ++                  P   +   +GTSM+ PH++G  AL+ + 
Sbjct: 195 ELDVMAPGVSIQSTL-----------------PGNKYGAYNGTSMASPHVAGAAALILSK 237

Query: 434 HPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487
           HP W+   ++S++  T +                K  D F YG G ++   A  
Sbjct: 238 HPNWTNTQVRSSLENTTT----------------KLGDSFYYGKGLINVQAAAQ 275

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIV 447
            +   +    +++  + I         GTS + P  +G+  LL   +P  +   ++   +
Sbjct: 235 MAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSI 294

Query: 448 TTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487
            +A   ++ A     + A  K+     YG G +D +K ++
Sbjct: 295 LSAVGLEKNADGDWRDSAMGKKYSHR-YGFGKIDAHKLIE 333

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 23/120 (19%)

Query: 373 LKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA 432
           +KPD+ APG  IL++ S           +        +    GTSM+ P ++G VA L+ 
Sbjct: 216 IKPDVMAPGTFILSARSS-----LAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLRE 270

Query: 433 IHP-----TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487
                   T  P+ +K+A++  A+                      + G G V  +K+++
Sbjct: 271 HFVKNRGITPKPSLLKAALIAGAA-------------DIGLGYPNGNQGWGRVTLDKSLN 317

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSA 445
           +++  V ++        +     + +  SGTSM+ PH++G+ A L  +  T + +A +  
Sbjct: 193 SNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-Y 251

Query: 446 IVTTAS 451
           I  TA+
Sbjct: 252 IADTAN 257

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 13/175 (7%)

Query: 73  DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAA 132
           D   HGTH +  AA          G+A            +   +     G  + +D+  A
Sbjct: 68  DLNNHGTHVAGIAAAETNNATGIAGMAPN--------TRILAVRALDRNGSGTLSDIADA 119

Query: 133 FDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVIN 192
              A   G +VI+LS              +     +A  KG  VV +AGN+G        
Sbjct: 120 IIYAADSGAEVINLS-----LGCDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPA 174

Query: 193 TAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIAT 247
           +   VI V A        +    G    VV              Y  + G  +A+
Sbjct: 175 SYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMAS 229

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

 Score = 43.0 bits (100), Expect = 6e-05
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSA 445
           +++    ++        + I    +   SGTSM+ PH++G+ ALL       +   I+ A
Sbjct: 195 SNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLA--SQGRNNIEIRQA 252

Query: 446 IVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487
           I  TA                        +  G ++   A+ 
Sbjct: 253 IEQTADKIS---------------GTGTYFKYGRINSYNAVT 279

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 17/102 (16%)

Query: 386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSA 445
           +++    ++        +  P   +   SGTSM+ PH++G+  LL +   +   + I++A
Sbjct: 194 STYGSWVDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAA 251

Query: 446 IVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487
           I  TA                        +  G V+  KA+ 
Sbjct: 252 IENTADKIS---------------GTGTYWAKGRVNAYKAVQ 278

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 31/181 (17%), Positives = 52/181 (28%), Gaps = 17/181 (9%)

Query: 55  AEFGKLNSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAI 114
            +F   N    V   + +    +G ++      G         L      G A  A   +
Sbjct: 45  QQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEW------DLDSQSIVGSAGGAVQQL 98

Query: 115 YKICWAPGGCSSADLLAAFDDATFD-GVDVISLSL------GSSLPLSTYVDDIISIGSF 167
                      +  L  AF+ A  D    VI++SL       ++       D I +    
Sbjct: 99  LFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFA---- 154

Query: 168 HAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFY 227
            A A+G +   S+G+ G Y               +         A+      T    A+ 
Sbjct: 155 TAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYS 214

Query: 228 N 228
           N
Sbjct: 215 N 215

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 16/241 (6%)

Query: 70  SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADL 129
                 G     +    G        + L   +A   AP A +A+Y       G  +A  
Sbjct: 57  VSVSVDGATNQPTGDPNGP----DGEVELDIEVAGALAPGAKIAVYFAPNTDAGFLNAI- 111

Query: 130 LAAFDDATFDGVDVISLSLGSSLPLSTY-VDDIISIGSFHAVAKGISVVCSAGNSGPYPQ 188
                        ++S+S G             ++     A A G++V+ +AG+SG    
Sbjct: 112 -TTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDG 170

Query: 189 TVINT--------APWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
                        +P+V+    + +  +                    G        P  
Sbjct: 171 EQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSW 230

Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIV-ICFQSQFQRSAATAARTVLDSGGVGL 299
             +      A+ G+        +           +    +      T+A   L +  V  
Sbjct: 231 QERANVPPSANPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVAR 290

Query: 300 I 300
           I
Sbjct: 291 I 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	639
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	100.0
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	100.0
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	100.0
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	100.0
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	100.0
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	100.0
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	100.0
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	100.0
d2pwaa1	279	Proteinase K {Fungus (Tritirachium album), strain	100.0
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	100.0
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	100.0
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	100.0
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	99.93
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	99.91
d1de4c2	193	Transferrin receptor ectodomain, apical domain {Hu	96.61
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.52
d3bi1a2	233	Glutamate carboxypeptidase II {Human (Homo sapiens	94.81

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=100.00  E-value=4.1e-48  Score=419.84  Aligned_cols=342  Identities=20%  Similarity=0.236  Sum_probs=215.0

Q ss_pred             CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecC--CCeEEEEEeecCCCCCCHHHHHHHHHHHHh-CCCcEEE
Q 006600           69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAP--LAWLAIYKICWAPGGCSSADLLAAFDDATF-DGVDVIS  145 (639)
Q Consensus        69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP--~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~dVIn  145 (639)
                      .+|.|++||||||||||||+..         +..+.||||  +++|+.+|++.....+...++++||+++++ .|++|||
T Consensus        57 ~~~~d~~gHGThvAgiiag~~~---------~~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin  127 (435)
T d1v6ca_          57 YQPGNNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVT  127 (435)
T ss_dssp             TCCCSSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCCCCCcHHHHHHHHhccCC---------CCceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEe
Confidence            4678899999999999999862         234689999  899999999987666677889999999986 5999999


Q ss_pred             EccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEE--Ee
Q 006600          146 LSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTV--VG  223 (639)
Q Consensus       146 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~--~g  223 (639)
                      +|||...     ....+..+++++.++|+++|+||||+|+...+.++.++++|+|||++.+.....+-..+....+  .|
T Consensus       128 ~S~g~~~-----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG  202 (435)
T d1v6ca_         128 MSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPG  202 (435)
T ss_dssp             ECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEEC
T ss_pred             cccCCCC-----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecc
Confidence            9999874     3455677888899999999999999998888888889999999998766543221111111111  01


Q ss_pred             EEeecCcCCCCceeee-EEccccccCC-C---CccccC------------------ccC--CCCCCCccccccEEEEEeC
Q 006600          224 QAFYNGKEDLNKFYPI-VIGKDIATFD-A---DEGSAR------------------SCE--SGTLNATLVRGKIVICFQS  278 (639)
Q Consensus       224 ~~~~~~~~~~~~~~pl-~~~~~~~~~~-~---~~~~~~------------------~c~--~~~~~~~~~~gkivl~~~~  278 (639)
                      ..+..........+.. .......... .   ......                  .|.  .......++.+++.++.+.
T Consensus       203 ~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (435)
T d1v6ca_         203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV  282 (435)
T ss_dssp             SSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred             cceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeecc
Confidence            1110000000000000 0000000000 0   000000                  000  0112223445555555542


Q ss_pred             C---CcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCC
Q 006600          279 Q---FQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISP  355 (639)
Q Consensus       279 ~---g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  355 (639)
                      .   .......+.......++.+++.++                                                    
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  310 (435)
T d1v6ca_         283 GNQGSSYPEINSTKACKTAGAKGIIVYS----------------------------------------------------  310 (435)
T ss_dssp             SCSSSSCTHHHHHHHHHHTTCSEEEEEC----------------------------------------------------
T ss_pred             CCccccceeeeeceeecccCCcceEEec----------------------------------------------------
Confidence            1   123344444445555555444332                                                    


Q ss_pred             eeecccCCCCCCCC--CCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhh
Q 006600          356 EVAFFSSRGPSSLS--PSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI  433 (639)
Q Consensus       356 ~~a~fSS~Gp~~~~--~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~  433 (639)
                           ++.+|....  ....||||.+||..|.++......................|..|||||||||||||++|||||+
T Consensus       311 -----~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~  385 (435)
T d1v6ca_         311 -----NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSY  385 (435)
T ss_dssp             -----CSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHH
Confidence                 333333211  2457999999999887653211000000000000000467999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCCCeeeeCcccchhhhhhc
Q 006600          434 HPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCA  505 (639)
Q Consensus       434 ~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~l~~  505 (639)
                      ||+|+++|||++||+||+++.             ..+++++||+|+||+.+|++           ||...|.
T Consensus       386 ~P~~s~~~vk~~L~~TA~~~~-------------~~~~~~~~G~G~vn~~~A~~-----------~l~~~~~  433 (435)
T d1v6ca_         386 HPECSASQVRAALNATADDLS-------------VAGRDNQTGYGMINAVAAKA-----------YLDESCT  433 (435)
T ss_dssp             CTTSCHHHHHHHHHHHSBCCS-------------SSSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred             CCCCCHHHHHHHHHhhCcccC-------------CCCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence            999999999999999999652             34567799999999999964           7777664

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=100.00  E-value=2.2e-46  Score=424.62  Aligned_cols=241  Identities=27%  Similarity=0.220  Sum_probs=192.3

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC------CCCCHHHHHHHHHHHHhCCCcE
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP------GGCSSADLLAAFDDATFDGVDV  143 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~------~~~~~~~i~~ai~~a~~~g~dV  143 (639)
                      ++.|..||||||||||||+..         +..+.||||+|+|+++|++.+.      +....+.+++||+||+++|++|
T Consensus       193 ~~~d~~gHGT~VAGiiaa~~~---------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~V  263 (671)
T d1r6va_         193 DSSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKV  263 (671)
T ss_dssp             BCCTTCSHHHHHHHHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSE
T ss_pred             cCcccCCCCccccceeeeecc---------ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcE
Confidence            466788999999999999752         2346899999999999999642      4567788999999999999999


Q ss_pred             EEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCceEEE
Q 006600          144 ISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVV  222 (639)
Q Consensus       144 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~  222 (639)
                      ||||||+..     ....+..+++.+.++|+++|+||||++... ...+...|++|+|||++...               
T Consensus       264 in~S~g~~~-----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~---------------  323 (671)
T d1r6va_         264 MNHSWGGWG-----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG---------------  323 (671)
T ss_dssp             EEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET---------------
T ss_pred             Eeccccccc-----CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC---------------
Confidence            999999873     446778888999999999999999998653 44566779999999864321               


Q ss_pred             eEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEe
Q 006600          223 GQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFA  302 (639)
Q Consensus       223 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~  302 (639)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (671)
T d1r6va_         324 --------------------------------------------------------------------------------  323 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCC
Q 006600          303 KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGV  382 (639)
Q Consensus       303 ~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~  382 (639)
                                                                        ....++.||+|||.+        ||+|||+
T Consensus       324 --------------------------------------------------~~~~~a~fS~~g~~~--------dv~APG~  345 (671)
T d1r6va_         324 --------------------------------------------------GTFRVAGFSSRSDGV--------SVGAPGV  345 (671)
T ss_dssp             --------------------------------------------------TEEEECSSSCCCTTE--------EEEEECS
T ss_pred             --------------------------------------------------CcceeeeccCCCCCc--------eEEecCC
Confidence                                                              012678999999987        9999999


Q ss_pred             cEEeccCCCCCCccCCCC-CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCcccc
Q 006600          383 NILASWSPVSNLEQTDHV-TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIV  461 (639)
Q Consensus       383 ~I~sa~~~~~~~~~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~  461 (639)
                      +|+|+++........... ......++.|..++|||||||||||++|||+|++|+|++.|||++|++||++++..     
T Consensus       346 ~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----  420 (671)
T d1r6va_         346 TILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----  420 (671)
T ss_dssp             SEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----
T ss_pred             CeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----
Confidence            999998754322111100 00001157899999999999999999999999999999999999999999976432     


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcCCcCCCCe
Q 006600          462 AEGAPHKQADPFDYGGGHVDPNKAMDPGL  490 (639)
Q Consensus       462 ~~~~~~~~~~~~~~G~G~id~~~A~~~~l  490 (639)
                              ..+..||||+||+.+||+..+
T Consensus       421 --------g~~~~~G~G~vna~~Av~~~~  441 (671)
T d1r6va_         421 --------GWDHDTGYGLVKLDAALQGPL  441 (671)
T ss_dssp             --------SCBTTTBTCBCCHHHHHHCCC
T ss_pred             --------CCCCCcccChhCHHHHhhCcC
Confidence                    234579999999999997543

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=100.00  E-value=7e-45  Score=370.69  Aligned_cols=242  Identities=29%  Similarity=0.326  Sum_probs=196.1

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+                           +++.+++|...               ...+.|..+||||
T Consensus        38 iDsGi~~~h~~l~~---------------------------~~~~~~~~~~~---------------~~~~~d~~~HGT~   75 (280)
T d1dbia_          38 IDTGVDYTHPDLDG---------------------------KVIKGYDFVDN---------------DYDPMDLNNHGTH   75 (280)
T ss_dssp             EESCCCTTSTTTTT---------------------------TEEEEEETTTT---------------BSCCCCSSSHHHH
T ss_pred             EccCcCCCChhhcC---------------------------CeeecccccCC---------------CCccccccccccc
Confidence            79999999999954                           23445555432               1356788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||+|+|...+        ...+.||||+|+|+.+|+++..+.+...++++||++++++|++|||||||...     ..+
T Consensus        76 vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~-----~~~  142 (280)
T d1dbia_          76 VAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HTT  142 (280)
T ss_dssp             HHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CCH
T ss_pred             eeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc-----cch
Confidence            99999988532        33568999999999999998777889999999999999999999999999873     334


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      ....+...+.++|+++|+||||+|......+...+++|+|||.+.+                                  
T Consensus       143 ~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------  188 (280)
T d1dbia_         143 TLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------------------------------  188 (280)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT----------------------------------
T ss_pred             hHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC----------------------------------
Confidence            5667778899999999999999997766677778899999975322                                  


Q ss_pred             EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV  320 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i  320 (639)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (280)
T d1dbia_         189 --------------------------------------------------------------------------------  188 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV  400 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~  400 (639)
                                                        +.++.||++||..        |++|||.+|++...           
T Consensus       189 ----------------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~-----------  215 (280)
T d1dbia_         189 ----------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTIT-----------  215 (280)
T ss_dssp             ----------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEET-----------
T ss_pred             ----------------------------------CCcCCcCCCCCcc--------cccCCccceecccc-----------
Confidence                                              4778999999977        99999999999887           


Q ss_pred             CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCC
Q 006600          401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV  480 (639)
Q Consensus       401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~i  480 (639)
                            ...|..++|||||||+|||++|||+|.  .+++.+||++|++||+++.               .+...||+|+|
T Consensus       216 ------~~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~---------------~~~~~~G~G~l  272 (280)
T d1dbia_         216 ------GNRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKIS---------------GTGTYFKYGRI  272 (280)
T ss_dssp             ------TTEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCT---------------TBTTTBSSEEC
T ss_pred             ------CcceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCC---------------CCCCcCCCCeE
Confidence                  578999999999999999999999995  4589999999999998652               12346999999


Q ss_pred             CcCCcCC
Q 006600          481 DPNKAMD  487 (639)
Q Consensus       481 d~~~A~~  487 (639)
                      |+++||+
T Consensus       273 n~~~Al~  279 (280)
T d1dbia_         273 NSYNAVT  279 (280)
T ss_dssp             CHHHHHT
T ss_pred             cHHHHcC
Confidence            9999986

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=100.00  E-value=3.2e-44  Score=365.94  Aligned_cols=242  Identities=29%  Similarity=0.374  Sum_probs=205.6

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.+                           +++..++|.++               ...|.|..+||||
T Consensus        37 iDsGi~~~H~~~~~---------------------------~~~~~~~~~~~---------------~~~~~d~~~HGT~   74 (279)
T d1thma_          37 VDTGVQSNHPDLAG---------------------------KVVGGWDFVDN---------------DSTPQNGNGHGTH   74 (279)
T ss_dssp             EESCCCTTCTTTTT---------------------------TEEEEEETTTT---------------BSCCCCSSSHHHH
T ss_pred             EcCCCCCCChhhcC---------------------------Ceecccccccc---------------Ccccccccccccc
Confidence            79999999999954                           34455666543               1356788999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD  160 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~  160 (639)
                      |||+|++...+        ...+.||||+|+|+.+|++...+.+...+++++|+++++.+++|+|||||...     ...
T Consensus        75 vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~-----~~~  141 (279)
T d1thma_          75 CAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GNS  141 (279)
T ss_dssp             HHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CCH
T ss_pred             cceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc-----cch
Confidence            99999998642        23568999999999999998877888999999999999999999999999873     445


Q ss_pred             hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006600          161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV  240 (639)
Q Consensus       161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~  240 (639)
                      ....+...+.++|+++|+|+||+|......+...+++|+|||++.+                                  
T Consensus       142 ~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~----------------------------------  187 (279)
T d1thma_         142 GLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN----------------------------------  187 (279)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT----------------------------------
T ss_pred             hHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC----------------------------------
Confidence            5677888899999999999999998877777788999999975422                                  


Q ss_pred             EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006600          241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV  320 (639)
Q Consensus       241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i  320 (639)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T d1thma_         188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006600          321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV  400 (639)
Q Consensus       321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~  400 (639)
                                                        +.++.||++|+..        ||+|||..|+++.+           
T Consensus       188 ----------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~-----------  214 (279)
T d1thma_         188 ----------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYP-----------  214 (279)
T ss_dssp             ----------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEET-----------
T ss_pred             ----------------------------------CCCccccCCCceE--------EEeeeeeccccccC-----------
Confidence                                              4678999999987        99999999999987           


Q ss_pred             CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCC
Q 006600          401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHV  480 (639)
Q Consensus       401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~i  480 (639)
                            ++.|..++|||||||+|||++|||+|.+|  ++.+||++|++||+++.               .....||+|+|
T Consensus       215 ------~~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~---------------g~~~~~G~G~v  271 (279)
T d1thma_         215 ------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS---------------GTGTYWAKGRV  271 (279)
T ss_dssp             ------TTEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT---------------TBTTTBSSEEC
T ss_pred             ------cccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC---------------CCCCcceeeeE
Confidence                  57899999999999999999999999766  78999999999998652               12346999999


Q ss_pred             CcCCcCC
Q 006600          481 DPNKAMD  487 (639)
Q Consensus       481 d~~~A~~  487 (639)
                      |+.+||+
T Consensus       272 n~~~Av~  278 (279)
T d1thma_         272 NAYKAVQ  278 (279)
T ss_dssp             CHHHHHH
T ss_pred             cHHHhhC
Confidence            9999975

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=100.00  E-value=2.4e-44  Score=365.95  Aligned_cols=215  Identities=30%  Similarity=0.420  Sum_probs=182.0

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .+.|..||||||||||++...         ...+.|+||+|+|+.+|++...+....++++++++++.+++++|||+|||
T Consensus        56 ~~~d~~gHGT~vAgii~~~~~---------~~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~  126 (274)
T d1r0re_          56 YNTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG  126 (274)
T ss_dssp             TTCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEE
T ss_pred             CCCCccccccccccccccccc---------cccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccccc
Confidence            456788999999999998753         22458999999999999998767778899999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC----cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEE
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ----TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQA  225 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~  225 (639)
                      ...     ..........++.++++++|+||||+|....    ..+...+++|+|||++.+                   
T Consensus       127 ~~~-----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------  182 (274)
T d1r0re_         127 GAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN-------------------  182 (274)
T ss_dssp             BSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-------------------
T ss_pred             ccc-----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC-------------------
Confidence            874     3344566677888999999999999986532    233456889999975422                   


Q ss_pred             eecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCC
Q 006600          226 FYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFP  305 (639)
Q Consensus       226 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~  305 (639)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (274)
T d1r0re_         183 --------------------------------------------------------------------------------  182 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEE
Q 006600          306 TKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNIL  385 (639)
Q Consensus       306 ~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~  385 (639)
                                                                       +.++.||++|+.+        ||+|||++|+
T Consensus       183 -------------------------------------------------~~~~~~s~~g~~~--------di~APG~~i~  205 (274)
T d1r0re_         183 -------------------------------------------------SNRASFSSVGAEL--------EVMAPGAGVY  205 (274)
T ss_dssp             -------------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEE
T ss_pred             -------------------------------------------------CCcccccCCCCCE--------EEEecCCCcc
Confidence                                                             4678999999855        9999999999


Q ss_pred             eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCC
Q 006600          386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGA  465 (639)
Q Consensus       386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~  465 (639)
                      ++.+                 .+.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.           
T Consensus       206 ~~~~-----------------~~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-----------  257 (274)
T d1r0re_         206 STYP-----------------TNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-----------  257 (274)
T ss_dssp             EEET-----------------TTEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----------
T ss_pred             cccC-----------------CCCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----------
Confidence            9987                 578999999999999999999999999999999999999999998642           


Q ss_pred             CCCCCCCCCCCCCCCCcCCcCC
Q 006600          466 PHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       466 ~~~~~~~~~~G~G~id~~~A~~  487 (639)
                           +...||+|+||+.+|++
T Consensus       258 -----~~~~~G~G~ln~~~A~~  274 (274)
T d1r0re_         258 -----SSFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             -----CHHHHTTCBCCHHHHTC
T ss_pred             -----CCCceEcCeecHHHhcC
Confidence                 23479999999999986

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=100.00  E-value=7.6e-44  Score=363.53  Aligned_cols=213  Identities=32%  Similarity=0.432  Sum_probs=182.7

Q ss_pred             CCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 006600           73 DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSL  152 (639)
Q Consensus        73 D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~  152 (639)
                      +..+|||||||||+|...         .....||||+|+|+.+|++..++.....+++++|+|+++.+++|||+|||.. 
T Consensus        60 ~~~~HGT~vAgiiag~~~---------~~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~-  129 (281)
T d1to2e_          60 DNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP-  129 (281)
T ss_dssp             CSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS-
T ss_pred             CcCCCCceeecccccCCC---------CCCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC-
Confidence            467999999999998742         2245899999999999999876677889999999999999999999999987 


Q ss_pred             CCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC----cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006600          153 PLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ----TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN  228 (639)
Q Consensus       153 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (639)
                          .....+..+++++.++|+++|+||||+|....    ..+...+++|+|||++.+                      
T Consensus       130 ----~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------  183 (281)
T d1to2e_         130 ----SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS----------------------  183 (281)
T ss_dssp             ----CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT----------------------
T ss_pred             ----cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC----------------------
Confidence                34566788888999999999999999996532    234456889999975422                      


Q ss_pred             CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006600          229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD  308 (639)
Q Consensus       229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~  308 (639)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (281)
T d1to2e_         184 --------------------------------------------------------------------------------  183 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006600          309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW  388 (639)
Q Consensus       309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~  388 (639)
                                                                    +.++.||++||.+        |++|||..|+++.
T Consensus       184 ----------------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~  209 (281)
T d1to2e_         184 ----------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTL  209 (281)
T ss_dssp             ----------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEE
T ss_pred             ----------------------------------------------CCCCcccCCCCCc--------cccCCCCCceeec
Confidence                                                          4678899999987        9999999999998


Q ss_pred             CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCC
Q 006600          389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHK  468 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~  468 (639)
                      +                 ++.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.              
T Consensus       210 ~-----------------~~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------  258 (281)
T d1to2e_         210 P-----------------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------  258 (281)
T ss_dssp             T-----------------TTEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------
T ss_pred             C-----------------CCeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------
Confidence            7                 578999999999999999999999999999999999999999999652              


Q ss_pred             CCCCCCCCCCCCCcCCcCCC
Q 006600          469 QADPFDYGGGHVDPNKAMDP  488 (639)
Q Consensus       469 ~~~~~~~G~G~id~~~A~~~  488 (639)
                        +...||+|+||+.+|++.
T Consensus       259 --~~~~~G~G~ld~~~A~~~  276 (281)
T d1to2e_         259 --DSFYYGKGLINVQAAAQH  276 (281)
T ss_dssp             --CHHHHTTCBCCHHHHTSS
T ss_pred             --CCCCcccCcccHHHHHhh
Confidence              123689999999999983

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=100.00  E-value=1.2e-43  Score=359.64  Aligned_cols=215  Identities=32%  Similarity=0.412  Sum_probs=186.8

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      .+.|..||||||||||++...         .....|+||+|+|+.+|++...+......+.++++++..+++++||+|||
T Consensus        55 ~~~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g  125 (269)
T d1gcia_          55 STQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLG  125 (269)
T ss_dssp             SCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             CccccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhccccccccccc
Confidence            456788999999999998753         23457999999999999998877888899999999999999999999999


Q ss_pred             CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006600          150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG  229 (639)
Q Consensus       150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (639)
                      ...     .......+..++.++|++||+||||+|......+...|++|+||++..+                       
T Consensus       126 ~~~-----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------------------  177 (269)
T d1gcia_         126 SPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-----------------------  177 (269)
T ss_dssp             BSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------------
T ss_pred             ccc-----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-----------------------
Confidence            873     3345566778889999999999999998777777788999999975422                       


Q ss_pred             cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006600          230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV  309 (639)
Q Consensus       230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~  309 (639)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (269)
T d1gcia_         178 --------------------------------------------------------------------------------  177 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006600          310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS  389 (639)
Q Consensus       310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~  389 (639)
                                                                   +.++.||++||..        ||+|||..+.++.+
T Consensus       178 ---------------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~  204 (269)
T d1gcia_         178 ---------------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYP  204 (269)
T ss_dssp             ---------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEET
T ss_pred             ---------------------------------------------CCcccccCCCCCc--------eEEEeeecceeccC
Confidence                                                         4678999999976        99999999999887


Q ss_pred             CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCC
Q 006600          390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQ  469 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~  469 (639)
                                       ...|..++|||||||+|||++|||+|++|+|++++||++|++||.++.               
T Consensus       205 -----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g---------------  252 (269)
T d1gcia_         205 -----------------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------  252 (269)
T ss_dssp             -----------------TTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------
T ss_pred             -----------------CCceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------------
Confidence                             578999999999999999999999999999999999999999999652               


Q ss_pred             CCCCCCCCCCCCcCCcCC
Q 006600          470 ADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       470 ~~~~~~G~G~id~~~A~~  487 (639)
                       +...||+|+||+++|++
T Consensus       253 -~~~~~G~G~ln~~~Avk  269 (269)
T d1gcia_         253 -STNLYGSGLVNAEAATR  269 (269)
T ss_dssp             -CHHHHTTCBCCHHHHTC
T ss_pred             -CCCCcccCeEcHHHhcC
Confidence             12358999999999986

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=2.5e-39  Score=334.27  Aligned_cols=270  Identities=29%  Similarity=0.298  Sum_probs=203.3

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|.++                           +...++|.....           .....+.|..|||||
T Consensus        33 iDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~-----------~~~~~~~d~~gHGT~   74 (309)
T d2ixta1          33 LDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT-----------PINNSCTDRNGHGTH   74 (309)
T ss_dssp             EESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-----------CEETCCCCSSSHHHH
T ss_pred             EccCCCCCChhHhcc---------------------------ccccccccCCCC-----------CCCCCcccccccccc
Confidence            799999999999553                           344455654321           112345678899999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC-----CCcEEEEccCCCCCCC
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD-----GVDVISLSLGSSLPLS  155 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~dVIn~SlG~~~~~~  155 (639)
                      |||||+|....       +...+.||||+|+|+.+|++...+.+..++++.+++++++.     ...|+|+||+...   
T Consensus        75 VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~---  144 (309)
T d2ixta1          75 VAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---  144 (309)
T ss_dssp             HHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS---
T ss_pred             ccccccccccc-------cchhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccccccccc---
Confidence            99999987532       22346899999999999999877788899999999998874     3468999999873   


Q ss_pred             CCccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc--CCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCC
Q 006600          156 TYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI--NTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDL  233 (639)
Q Consensus       156 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  233 (639)
                        .......++..+.++|+++|+||||++.......  ...+++++|++...........                    
T Consensus       145 --~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~--------------------  202 (309)
T d2ixta1         145 --NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYR--------------------  202 (309)
T ss_dssp             --CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEE--------------------
T ss_pred             --cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccccc--------------------
Confidence              3455667778888999999999999997655443  3457888888653221000000                    


Q ss_pred             CceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccc
Q 006600          234 NKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSF  313 (639)
Q Consensus       234 ~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~  313 (639)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (309)
T d2ixta1         203 --------------------------------------------------------------------------------  202 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCC
Q 006600          314 GVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSN  393 (639)
Q Consensus       314 ~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~  393 (639)
                                                           .........++++|+..  ....||||+|||.+|+++.+    
T Consensus       203 -------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~----  239 (309)
T d2ixta1         203 -------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWY----  239 (309)
T ss_dssp             -------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECT----
T ss_pred             -------------------------------------ccccccccccccccccc--cCCCcceeecCCCceeeecC----
Confidence                                                 00112344567777776  66789999999999999987    


Q ss_pred             CccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCC
Q 006600          394 LEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPF  473 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~  473 (639)
                                   ...|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+..      .......+
T Consensus       240 -------------~~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~------g~~~~~~~  300 (309)
T d2ixta1         240 -------------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY------GAAIGDDY  300 (309)
T ss_dssp             -------------TSSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST------TCCSSSBT
T ss_pred             -------------CCcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc------CCccCCCc
Confidence                         57899999999999999999999999999999999999999999987644321      23455667


Q ss_pred             CCCCCCCCc
Q 006600          474 DYGGGHVDP  482 (639)
Q Consensus       474 ~~G~G~id~  482 (639)
                      .+|+|++|+
T Consensus       301 ~~g~G~~~v  309 (309)
T d2ixta1         301 ASGFGFARV  309 (309)
T ss_dssp             TTBTCBCCC
T ss_pred             ccCCCEecC
Confidence            889999875

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

Probab=100.00  E-value=5.6e-39  Score=326.90  Aligned_cols=202  Identities=31%  Similarity=0.357  Sum_probs=167.8

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC-------CCc
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD-------GVD  142 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~-------g~d  142 (639)
                      ++.|.+||||||||||+|+.              .|+||+|+|+.+|++........+.+..+++++...       +++
T Consensus        62 ~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (279)
T d2pwaa1          62 SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV  127 (279)
T ss_dssp             CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred             CcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccc
Confidence            34577899999999999863              699999999999999876778888999999998764       345


Q ss_pred             EEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCc-ccCCCCcEEEEEeeccCCccceEEEeCCceEE
Q 006600          143 VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT-VINTAPWVITVAASTIDRAFPTAITMGNNQTV  221 (639)
Q Consensus       143 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~  221 (639)
                      |+|+|||...      .+.+..++.++.++|+++|+||||++..... .+...|++|+|||++.+               
T Consensus       128 i~n~s~g~~~------~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~---------------  186 (279)
T d2pwaa1         128 VASLSLGGGY------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY---------------  186 (279)
T ss_dssp             EEEECCCEEC------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------
T ss_pred             ceeccCCCcc------ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec---------------
Confidence            9999999762      3567778888999999999999999865433 34567889999975422               


Q ss_pred             EeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEE
Q 006600          222 VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIF  301 (639)
Q Consensus       222 ~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~  301 (639)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T d2pwaa1         187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCC
Q 006600          302 AKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPG  381 (639)
Q Consensus       302 ~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG  381 (639)
                                                                           +.++.||++||..        ||+|||
T Consensus       187 -----------------------------------------------------g~~~~~S~~G~~~--------dv~APG  205 (279)
T d2pwaa1         187 -----------------------------------------------------DRRSSFSNYGSVL--------DIFGPG  205 (279)
T ss_dssp             -----------------------------------------------------SBBCTTCCBSTTC--------CEEEEC
T ss_pred             -----------------------------------------------------CCCccccCCCCcc--------cccccc
Confidence                                                                 4778999999987        999999


Q ss_pred             CcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCcccc
Q 006600          382 VNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIV  461 (639)
Q Consensus       382 ~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~  461 (639)
                      .+|+++++                 ++.|..++|||||||+|||++|||+|++|.++++++|. |++||++.+       
T Consensus       206 ~~i~s~~~-----------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-------  260 (279)
T d2pwaa1         206 TDILSTWI-----------------GGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-------  260 (279)
T ss_dssp             SSEEEEET-----------------TTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-------
T ss_pred             cccccccc-----------------CCcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-------
Confidence            99999987                 57899999999999999999999999999999887775 778887421       


Q ss_pred             ccCCCCCCCCCCCCCCCCCCc
Q 006600          462 AEGAPHKQADPFDYGGGHVDP  482 (639)
Q Consensus       462 ~~~~~~~~~~~~~~G~G~id~  482 (639)
                                ....|+|++|+
T Consensus       261 ----------~~~~g~g~~n~  271 (279)
T d2pwaa1         261 ----------LSNIPFGTVNL  271 (279)
T ss_dssp             ----------CBSCCTTSCCE
T ss_pred             ----------CCCCCCCChhh
Confidence                      22579999886

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=100.00  E-value=1.3e-37  Score=322.56  Aligned_cols=280  Identities=26%  Similarity=0.267  Sum_probs=206.0

Q ss_pred             CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006600            1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH   80 (639)
Q Consensus         1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH   80 (639)
                      ||||||++||+|....                .     ...++...+.+...                .++.|..|||||
T Consensus        29 iDsGi~~~h~~~~~~~----------------~-----~~~~~~~~~~~~~~----------------~~~~d~~gHGT~   71 (318)
T d1wmda2          29 ADTGLDTGRNDSSMHE----------------A-----FRGKITALYALGRT----------------NNANDTNGHGTH   71 (318)
T ss_dssp             EESCCTTSCSSTTSCT----------------T-----TTTCEEEEEETTTT----------------TCCCCSSSHHHH
T ss_pred             EcCCcCCCCcccccCc----------------c-----cCCcEEeecCCCCC----------------CCCCCCCCCCcc
Confidence            6999999999996531                0     23345555554322                245678999999


Q ss_pred             hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC--CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCc
Q 006600           81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG--GCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYV  158 (639)
Q Consensus        81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~--~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~  158 (639)
                      |||||+|+..           ...||||+|+|+.+|++...+  ......+..+++++...+++|+|+|||.....  ..
T Consensus        72 vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~--~~  138 (318)
T d1wmda2          72 VAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNG--AY  138 (318)
T ss_dssp             HHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTT--CC
T ss_pred             ceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccccccccc--cc
Confidence            9999998742           237999999999999997643  23455678899999999999999999988522  33


Q ss_pred             cchHHHHHHHhHhCCcEEEEeccCCCCCCCcccC--CCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCce
Q 006600          159 DDIISIGSFHAVAKGISVVCSAGNSGPYPQTVIN--TAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKF  236 (639)
Q Consensus       159 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  236 (639)
                      ......+...+.++++++|+|+||.|.....+..  ..++++++.+.........                         
T Consensus       139 ~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------------------  193 (318)
T d1wmda2         139 TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG-------------------------  193 (318)
T ss_dssp             CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC-------------------------
T ss_pred             chhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc-------------------------
Confidence            4455666667789999999999999977655443  3466777765432210000                         


Q ss_pred             eeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCcccccc
Q 006600          237 YPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVP  316 (639)
Q Consensus       237 ~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip  316 (639)
                                         .                                                            
T Consensus       194 -------------------~------------------------------------------------------------  194 (318)
T d1wmda2         194 -------------------S------------------------------------------------------------  194 (318)
T ss_dssp             -------------------G------------------------------------------------------------
T ss_pred             -------------------c------------------------------------------------------------
Confidence                               0                                                            


Q ss_pred             EEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCcc
Q 006600          317 YIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQ  396 (639)
Q Consensus       317 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~  396 (639)
                                                       .......+..+|++||..  ....|||+.|||.+|+++.........
T Consensus       195 ---------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~  239 (318)
T d1wmda2         195 ---------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSS  239 (318)
T ss_dssp             ---------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGG
T ss_pred             ---------------------------------ccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCc
Confidence                                             001124677899999988  788999999999999998875432221


Q ss_pred             CCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCC
Q 006600          397 TDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH-----PTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQAD  471 (639)
Q Consensus       397 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~  471 (639)
                      ...     .....|..++|||||||+|||++|||+|++     +.|++.+||++|++||+++.             ...+
T Consensus       240 ~~~-----~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~-------------~~~~  301 (318)
T d1wmda2         240 FWA-----NHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG-------------LGYP  301 (318)
T ss_dssp             SSE-----EEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-------------SCSS
T ss_pred             ccc-----CCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC-------------CCCC
Confidence            111     114678889999999999999999999975     46889999999999999652             2344


Q ss_pred             CCCCCCCCCCcCCcCC
Q 006600          472 PFDYGGGHVDPNKAMD  487 (639)
Q Consensus       472 ~~~~G~G~id~~~A~~  487 (639)
                      ...||||+||+.+||+
T Consensus       302 ~~~~G~G~ld~~~Al~  317 (318)
T d1wmda2         302 NGNQGWGRVTLDKSLN  317 (318)
T ss_dssp             CTTTTTCBCCHHHHHT
T ss_pred             CCCeeeceecHHHHhC
Confidence            5689999999999986

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.7e-35  Score=302.79  Aligned_cols=233  Identities=18%  Similarity=0.143  Sum_probs=158.6

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh-CCCcEEEEcc
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF-DGVDVISLSL  148 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~dVIn~Sl  148 (639)
                      ...|..||||||||||+|...++        ....|+||+++|+.+|+...    ...+.+.++.++++ .+++++||||
T Consensus        79 ~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~n~S~  146 (334)
T d1p8ja2          79 TQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG----EVTDAVEARSLGLNPNHIHIYSASW  146 (334)
T ss_dssp             CTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS----CCCHHHHHHHHTSCTTTCCEEEECC
T ss_pred             ccccCccchhhhhhhhhhccccc--------cccccccccccccchhhccc----cccchHHHHHHHhhhcCCcEEeCCC
Confidence            44578899999999999986432        23479999999999998753    33455667777765 6899999999


Q ss_pred             CCCCCCCCCc-------cchHHHHHHHhHhCCcEEEEeccCCCCCCCcccC----CCCcEEEEEeeccCCccceEEEeCC
Q 006600          149 GSSLPLSTYV-------DDIISIGSFHAVAKGISVVCSAGNSGPYPQTVIN----TAPWVITVAASTIDRAFPTAITMGN  217 (639)
Q Consensus       149 G~~~~~~~~~-------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVgA~~~~~~~~~~~~~~~  217 (639)
                      |.........       ......+...+.++|+++|+||||++........    ..+.+++|++....           
T Consensus       147 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------  215 (334)
T d1p8ja2         147 GPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF-----------  215 (334)
T ss_dssp             BSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-----------
T ss_pred             CCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC-----------
Confidence            9865221111       1112233445568899999999998754332221    23445555543221           


Q ss_pred             ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006600          218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV  297 (639)
Q Consensus       218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~  297 (639)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (334)
T d1p8ja2         216 --------------------------------------------------------------------------------  215 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCce
Q 006600          298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDI  377 (639)
Q Consensus       298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI  377 (639)
                                                                               +..+.||++|+..      ...+
T Consensus       216 ---------------------------------------------------------g~~~~~s~~~~~~------~~~~  232 (334)
T d1p8ja2         216 ---------------------------------------------------------GNVPWYSEACSST------LATT  232 (334)
T ss_dssp             ---------------------------------------------------------SCCCTTCCBCTTC------CEEE
T ss_pred             ---------------------------------------------------------CceeeecccCCcc------cccc
Confidence                                                                     3445556665544      1133


Q ss_pred             EcCCCc-----EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcc
Q 006600          378 AAPGVN-----ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASL  452 (639)
Q Consensus       378 ~APG~~-----I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~  452 (639)
                      .+||..     +.+...                 ...|..++|||||||+|||++|||+|++|+|++.|||++|++||.+
T Consensus       233 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~  295 (334)
T d1p8ja2         233 YSSGNQNEKQIVTTDLR-----------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKP  295 (334)
T ss_dssp             ECCCSTTSCCEEEEETT-----------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBC
T ss_pred             ccccccccccccccccC-----------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcc
Confidence            344322     222222                 4778899999999999999999999999999999999999999998


Q ss_pred             CCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          453 KDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       453 ~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                      .......+...  .........||+|+||+++||+
T Consensus       296 ~~~~~~~~~~~--~~~~~~~~~~G~G~lna~~Av~  328 (334)
T d1p8ja2         296 AHLNADDWATN--GVGRKVSHSYGYGLLDAGAMVA  328 (334)
T ss_dssp             TTCCCSCCEEC--TTSCEEBTTTBTCBCCHHHHHH
T ss_pred             cCCCCcccccc--CCCcccCCCCcceEeCHHHHHH
Confidence            75444333322  1223344578999999999987

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=301.35  Aligned_cols=237  Identities=18%  Similarity=0.109  Sum_probs=168.8

Q ss_pred             CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006600           70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG  149 (639)
Q Consensus        70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG  149 (639)
                      ...+..+|||||||+|+|....+        ....||||+|+|+.+|+..  +.....++..++.++++. .+|+|+|||
T Consensus        85 ~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~v~~~s~g  153 (339)
T d2id4a2          85 PRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILS--GDITTEDEAASLIYGLDV-NDIYSCSWG  153 (339)
T ss_dssp             CCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTT--SCCCHHHHHHHTTTTTTT-CSEEEECEE
T ss_pred             CCcccccccceeeeccccccccc--------ccccccccccccceEEEee--ccccchHHHHHHHHHHhh-CCEEeccCC
Confidence            34567899999999999875432        2358999999999999875  467778888888887765 489999999


Q ss_pred             CCCCCCCCc--c----c-hHHHHHHHhHhCCcEEEEeccCCCCCCCccc--C--CCCcEEEEEeeccCCccceEEEeCCc
Q 006600          150 SSLPLSTYV--D----D-IISIGSFHAVAKGISVVCSAGNSGPYPQTVI--N--TAPWVITVAASTIDRAFPTAITMGNN  218 (639)
Q Consensus       150 ~~~~~~~~~--~----~-~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~--~ap~vitVgA~~~~~~~~~~~~~~~~  218 (639)
                      .........  .    . ....+...+..+|+++|+||||++.......  .  ..+.+++|++++              
T Consensus       154 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  219 (339)
T d2id4a2         154 PADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID--------------  219 (339)
T ss_dssp             SCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC--------------
T ss_pred             CCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc--------------
Confidence            764221111  1    1 1223344555799999999999875432221  1  223444444322              


Q ss_pred             eEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceE
Q 006600          219 QTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVG  298 (639)
Q Consensus       219 ~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g  298 (639)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (339)
T d2id4a2         220 --------------------------------------------------------------------------------  219 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceE
Q 006600          299 LIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIA  378 (639)
Q Consensus       299 ~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~  378 (639)
                                                                            ..+..+.||++|+..    ...++..
T Consensus       220 ------------------------------------------------------~~g~~~~~s~~~~~~----~~~~~~~  241 (339)
T d2id4a2         220 ------------------------------------------------------HKDLHPPYSEGCSAV----MAVTYSS  241 (339)
T ss_dssp             ------------------------------------------------------TTSCCCTTCCCCTTE----EEEEECS
T ss_pred             ------------------------------------------------------ccccccccccccCcc----ceeeeee
Confidence                                                                  123556677777643    3456778


Q ss_pred             cCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCc
Q 006600          379 APGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQ  458 (639)
Q Consensus       379 APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~  458 (639)
                      +||..|.++...                +..|..++|||||||||||++|||+|++|+|++.|||.+|+.||.+++....
T Consensus       242 ~~g~~~~s~~~~----------------~~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~  305 (339)
T d2id4a2         242 GSGEYIHSSDIN----------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNAD  305 (339)
T ss_dssp             BTTBCEEEECST----------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGG
T ss_pred             ccccccceeccC----------------CCccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCC
Confidence            899999887653                4678999999999999999999999999999999999999999998754322


Q ss_pred             cc-cccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006600          459 SI-VAEGAPHKQADPFDYGGGHVDPNKAMD  487 (639)
Q Consensus       459 p~-~~~~~~~~~~~~~~~G~G~id~~~A~~  487 (639)
                      .. .+.  .........||||+||+.+||+
T Consensus       306 ~~~~~~--~~~~~~~~~~G~G~ln~~~Av~  333 (339)
T d2id4a2         306 GDWRDS--AMGKKYSHRYGFGKIDAHKLIE  333 (339)
T ss_dssp             GCCEEC--SSSSEEBTTTBTCBCCHHHHHH
T ss_pred             cccccc--CCCCCcCCCccchhhCHHHHHH
Confidence            11 111  1223345579999999999987

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=99.93  E-value=3.3e-28  Score=254.99  Aligned_cols=123  Identities=21%  Similarity=0.232  Sum_probs=82.1

Q ss_pred             CCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH---hCCCcEEEEccC
Q 006600           73 DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT---FDGVDVISLSLG  149 (639)
Q Consensus        73 D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~---~~g~dVIn~SlG  149 (639)
                      |.++|+|||+|++++...+.    ..+...+.||||+|+|+.+|+...     ....+.++++++   +.+++|||+|||
T Consensus        60 ~~~g~~~~~~g~~~~~~~~~----~~d~~~~~GvAp~A~i~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~Vin~S~G  130 (357)
T d1t1ga_          60 SVDGATNQPTGDPNGPDGEV----ELDIEVAGALAPGAKIAVYFAPNT-----DAGFLNAITTAVHDPTHKPSIVSISWG  130 (357)
T ss_dssp             ESTTCCCCCCSCTTSTHHHH----HHHHHHHHHHSTTSEEEEEECCSS-----HHHHHHHHHHHHHCTTTCCSEEEECCC
T ss_pred             CCCCCCCCCCCccccccccc----cCCcccceeecccCeEEEEecccC-----CCchHHHHHHHHHhhhcCCeEEecccc
Confidence            45678888888876553211    112234689999999999998754     234555666654   469999999999


Q ss_pred             CCCCCC-CCccchHHHHHHHhHhCCcEEEEeccCCCCCCCc--------ccCCCCcEEEEEeec
Q 006600          150 SSLPLS-TYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT--------VINTAPWVITVAAST  204 (639)
Q Consensus       150 ~~~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA~~  204 (639)
                      ...... ......+...+..+..+|+++|+|+||+|.....        .....+++++|++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (357)
T d1t1ga_         131 GPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR  194 (357)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred             cCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence            864110 0112345666677789999999999999854322        223457888888754

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=99.91  E-value=1.4e-25  Score=236.47  Aligned_cols=124  Identities=19%  Similarity=0.137  Sum_probs=95.8

Q ss_pred             CCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCC
Q 006600           73 DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF-DGVDVISLSLGSS  151 (639)
Q Consensus        73 D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~dVIn~SlG~~  151 (639)
                      +..+||||+++++.+..         ....+.||||+|+|+++|++.+.+.....+++++|++|++ .+++|||+|||..
T Consensus        66 ~~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~  136 (369)
T d1ga6a_          66 SNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC  136 (369)
T ss_dssp             TTSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred             CCCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence            46789999999988653         2334689999999999999988677888899999999986 5799999999975


Q ss_pred             CC--CCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-------------cccCCCCcEEEEEeecc
Q 006600          152 LP--LSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-------------TVINTAPWVITVAASTI  205 (639)
Q Consensus       152 ~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~ap~vitVgA~~~  205 (639)
                      ..  ......+.+..++.++.++|++||+||||+|....             ..+...+++++|+++..
T Consensus       137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~  205 (369)
T d1ga6a_         137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL  205 (369)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred             ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence            31  01123355667788888999999999999985422             12234689999997653

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00094  Score=60.20  Aligned_cols=66  Identities=23%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             ccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC---------C-------Cc------------------
Q 006600          266 TLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD---------V-------HF------------------  311 (639)
Q Consensus       266 ~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---------~-------~~------------------  311 (639)
                      .+++|||+|+++  |.+.+.+|..+|++.||.|+|+|.++.+.         .       .+                  
T Consensus        59 ~~v~GkI~l~r~--G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~  136 (193)
T d1de4c2          59 TPVNGSIVIVRA--GKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR  136 (193)
T ss_dssp             SCCTTSEEEEES--CSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCC
T ss_pred             cccCceEEEEeC--CCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccc
Confidence            578999999999  89999999999999999999999764432         0       00                  


Q ss_pred             ---cccccEEEEchhhHHHHHHHHH
Q 006600          312 ---SFGVPYIQVDFAIGTSLLTYME  333 (639)
Q Consensus       312 ---~~~ip~~~i~~~~~~~l~~~~~  333 (639)
                         --.||+.-|+..+++.|++.+.
T Consensus       137 ~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         137 SSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             cCCCCcCCeeeCCHHHHHHHHHHcC
Confidence               0237899999999999988663

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.52  E-value=0.021  Score=45.92  Aligned_cols=89  Identities=18%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             CCcCeEEecccCccEEEEEEEEEcCCCCee-EEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEee-cCCCceEEE
Q 006600          534 LNLPSITIPELKKSITVSRQVTNVSPMNSV-YTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRL-RVQGRYSFG  611 (639)
Q Consensus       534 ln~ps~~~~~~~~~~~~~~tvtn~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~G  611 (639)
                      +..|++.+.- ....+++.+|+|.|....+ -.++++.|+|=++...+.  .+ ++||+++++++|.++. +..+.|...
T Consensus         6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~--~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i~   81 (103)
T d1w8oa1           6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVE--PL-MPGRQAKGQVTITVPAGTTPGRYRVG   81 (103)
T ss_dssp             EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEEC--CB-CTTCEEEEEEEEECCTTCCCEEEEEE
T ss_pred             ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcce--ee-CCCCcEEEEEEEECCCCCCCceEEEE
Confidence            4456777644 4678999999999976654 567888999988865444  44 6899999999999873 344555444


Q ss_pred             EEEEEcCceEEEEeEE
Q 006600          612 NLFWEDGIHVVRIPLI  627 (639)
Q Consensus       612 ~i~~~~~~~~v~~P~~  627 (639)
                       +..+.+.......|-
T Consensus        82 -~~a~~~~~~~s~t~t   96 (103)
T d1w8oa1          82 -ATLRTSAGNASTTFT   96 (103)
T ss_dssp             -EEEEETTEEEEEEEE
T ss_pred             -EEEEeCCcceEEEEE
Confidence             444544333333333

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.01  Score=54.95  Aligned_cols=39  Identities=23%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCC
Q 006600          265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFP  305 (639)
Q Consensus       265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~  305 (639)
                      ..+++|||+|+++  |.+.+.+|..+|++.||.|+|+|.++
T Consensus        76 gi~~~gkIvl~ry--G~~~~~~Kv~~A~~~GA~GviiysDP  114 (233)
T d3bi1a2          76 KINCSGKIVIARY--GKVFRGNKVKNAQLAGAKGVILYSDP  114 (233)
T ss_dssp             CCCCTTCEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred             CCcccceEEEEeC--CCCchhHHHHHHHHcCceEEEEecCh
Confidence            4589999999999  88999999999999999999999875