Citrus Sinensis ID: 006632
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 637 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GZ63 | 574 | Pentatricopeptide repeat- | yes | no | 0.874 | 0.970 | 0.577 | 0.0 | |
| Q8S9D1 | 831 | Pentatricopeptide repeat- | no | no | 0.745 | 0.571 | 0.569 | 1e-161 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.701 | 0.565 | 0.261 | 2e-57 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.711 | 0.757 | 0.275 | 2e-56 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.718 | 0.718 | 0.278 | 1e-55 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.596 | 0.671 | 0.288 | 2e-55 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.704 | 0.605 | 0.262 | 4e-54 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.775 | 0.539 | 0.274 | 9e-54 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.687 | 0.696 | 0.272 | 9e-54 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.692 | 0.718 | 0.259 | 5e-53 |
| >sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/608 (57%), Positives = 435/608 (71%), Gaps = 51/608 (8%)
Query: 41 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
EKK++ S+P S P C C+ SCRTVRS TKLMN LIERG+P EAQ
Sbjct: 7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQT 66
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
+F L E GH+PSL++YTTLLAA+T+QK++ SI SI+S+VE++G DSIFFNAVINAFS
Sbjct: 67 VFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFS 126
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK--P 211
ESGNME+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S +LLDLM EGNV P
Sbjct: 127 ESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGP 186
Query: 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271
N+RT+NVLV+AWC +K + EAW V+ KM G++PD VTYNTIAT Y Q GE +AE +
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEV 246
Query: 272 VE--MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329
VE + +PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFV
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389
E+MDRDG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAH
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
AYSILAKGYVR +EP+KAEELL T+I PNVVIFTT+ISGWCS+GSMD A+ VF+KM
Sbjct: 367 AYSILAKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKM 425
Query: 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
C+ GVSPN+KTFETLMWGY E +QPW+AEE+LQ+M+ GV P+ STFLLLAEA R GLT
Sbjct: 426 CKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT 485
Query: 510 KEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGS 569
E+ + ++ +K K DI + LE+LY K+++ +S+ NLLQIP V + +
Sbjct: 486 DESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPT 532
Query: 570 AAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLAN 629
A A M LS +CK GAR+PIICQKQ Q G+ Q +
Sbjct: 533 AKA------------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVH 567
Query: 630 SCTVVFLN 637
SCT VFL+
Sbjct: 568 SCT-VFLS 574
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/478 (56%), Positives = 362/478 (75%), Gaps = 3/478 (0%)
Query: 35 KKNNPGEKKQLYSNSKPTDSQPQTH-CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
K+ N + + ++ +S+ Q ++ C C +C VRS TKLMN LIERG+PQEA +
Sbjct: 281 KEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHS 340
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
IFN LIE GHKPSL+TYTTL+ ALT QK F+S+ S++S+VE+NG+ PD+I FNA+INA S
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL 213
ESGN+++AM F KMKESG PT ST+NTLIKGYG GK EES +LLD+M R+ ++PN
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460
Query: 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV- 272
RT N+LV+AWCN++ I EAWN+++KM + G+KPDVVT+NT+A AYA+ G AE++I+
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520
Query: 273 EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332
M HN V+PN RTCG I++GYC+EGK++EALRF MKE GVHPNL +FN LIKGF+ I
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580
Query: 333 DRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392
D DGV EV+ LM+EF V PDV+T+ST+MNAWS+ G M +C+EI+ DM + GI PD HA+S
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640
Query: 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE- 451
ILAKGY R EPEKAE++L M + G PNVVI+T IISGWCS G M +A++V+ KMC
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI 700
Query: 452 HGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
G+SPNL T+ETL+WG+ EA+QPW+AEE+L+ M+ V P + T L+A+ ++ G++
Sbjct: 701 VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIGVS 758
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 242/448 (54%), Gaps = 1/448 (0%)
Query: 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMS 131
V S T ++N + G +A + ++ +++ G P +VTY +++AAL + + +++
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255
Query: 132 QVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191
+ +NG+ PD + +N++++ + SG +EA+ KM+ G+ P TY+ L+ G
Sbjct: 256 TMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNG 315
Query: 192 KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTY 251
+ E+ K+ D M++ G +KP + TY L++ + + + E ++ M +G+ PD +
Sbjct: 316 RCMEARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374
Query: 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311
+ + AYA+ G+ DQA V +M G+ PN T G +I CK G++++A+ + M +
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434
Query: 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371
G+ P +++N LI G + +E++ M + + + I +++I+++ G + +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 494
Query: 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431
+++F+ M + G+KP+ Y+ L GY + ++A +LL M+ G PN V ++T+I+
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554
Query: 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491
G+C M+ A+ +F +M GVSP++ T+ ++ G + R+ A+E+ + G
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614
Query: 492 QKSTFLLLAEARRATGLTKEAKRILSKI 519
+ ST+ ++ LT +A ++ +
Sbjct: 615 ELSTYNIILHGLCKNKLTDDALQMFQNL 642
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 227/457 (49%), Gaps = 4/457 (0%)
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
T L+ GK ++A I L G P ++TY +++ N+ S++ ++
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS- 199
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
+ PD + +N ++ + +SG +++AM+ +M + P TY LI+
Sbjct: 200 --VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH 257
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
++KLLD M R+ P++ TYNVLV C E + EA ++ M +SG +P+V+T+N I
Sbjct: 258 AMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
+ G AE+++ +M G P+ T I+I+ C++G + A+ M ++G
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PN + +N L+ GF + D E L M PD++TY+T++ A G ++ EI
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
+ + G P Y+ + G + + KA +LL M P+ + +++++ G
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
+G +D AI+ F + G+ PN TF ++M G ++RQ RA + L M G P +++
Sbjct: 497 EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEE 532
+ +L E G+ KEA +L+++ NK + AE+
Sbjct: 557 YTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQ 593
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 239/464 (51%), Gaps = 6/464 (1%)
Query: 61 SFCMNKE----SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA 116
SFC + S R + +L + L++ K +A +F ++I P+++ ++ L +A
Sbjct: 39 SFCCERGFSAFSDRNLSYRERLRSGLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSA 97
Query: 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT 176
+ K+++ + ++ Q+E G+ + + +IN F + A K+ + G P
Sbjct: 98 IAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPN 157
Query: 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236
T T++TLI G + G+ E+++L+D M G+ KP+L T N LV C EA ++
Sbjct: 158 TITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSGKEAEAMLLI 216
Query: 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE 296
KM G +P+ VTY + ++G+ A E++ +ME ++ + III G CK
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276
Query: 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITY 356
G + A M+ G+ N++ +N+LI GF D ++L M + ++NP+V+T+
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416
S +++++ G + + +E+ +M GI PD Y+ L G+ +E +KA +++ M+
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476
G PN+ F +I+G+C +D +E+F KM GV + T+ TL+ G+ E +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 477 AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
A+E+ Q M + V P T+ +L + G +++A I KI+
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 213/385 (55%), Gaps = 5/385 (1%)
Query: 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS 178
I+K F+ ++ ++ E G P+ + + +I+ + G +E+A D F++M + GL
Sbjct: 179 IEKSFD----LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANER 234
Query: 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238
TY LI G G ++ ++ + M +G V PNL TYN ++ C + +A+ V +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 239 MAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298
M G+ ++VTYNT+ + + ++A +V+ +M+ +G+ PN T +I G+C GK
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST 358
+ +AL R +K G+ P+LV +N+L+ GF D G +++ M+E + P +TY+
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418
+++ ++ + M+K ++ M + G+ PD H YS+L G+ + + +A L +M+E
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478
PN VI+ T+I G+C +GS RA+++ +M E ++PN+ ++ ++ + R+ AE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533
Query: 479 EILQIMKAFGVHPQKSTFLLLAEAR 503
+++ M G+ P S L++ A+
Sbjct: 534 RLVEKMIDSGIDPSTSILSLISRAK 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/458 (26%), Positives = 224/458 (48%), Gaps = 9/458 (1%)
Query: 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHS 128
C V S +++ + + G+ +EA + + G+ P +++Y+T++ + +
Sbjct: 243 CWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWK 302
Query: 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188
++ ++ G+ P+S + ++I + EA + F +M G+ P T Y TLI G+
Sbjct: 303 LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC 362
Query: 189 IAGKPEESVKLL-DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD 247
G + K ++ SR+ + P++ TY ++ +C ++ EA + H+M G++PD
Sbjct: 363 KRGDIRAASKFFYEMHSRD--ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307
VT+ + Y + G A V M G PN T +I G CKEG + A
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR---VNPDVITYSTIMNAWS 364
M + G+ PN+ +N ++ G + ++E + L+ EF +N D +TY+T+M+A+
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCK---SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 537
Query: 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424
+G MDK +EI +M G++P +++L G+ E E+LL M+ G PN
Sbjct: 538 KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 597
Query: 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484
F +++ +C ++ A ++ MC GV P+ KT+E L+ G+ +AR A + Q M
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657
Query: 485 KAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522
K G ST+ +L + EA+ + +++ +
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 144/525 (27%), Positives = 257/525 (48%), Gaps = 31/525 (5%)
Query: 41 EKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIE 100
++K L S K + P C R + T L++ L + EA +F + +
Sbjct: 265 QRKDLDSAFKVFNEMPLKGCR--------RNEVAYTHLIHGLCVARRIDEAMDLFVKMKD 316
Query: 101 GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160
P++ TYT L+ +L +R + +++ ++EE G+ P+ + +I++ E+
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEK 376
Query: 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220
A + +M E GL P TYN LI GY G E++V +++LM + PN RTYN L+
Sbjct: 377 ARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR-KLSPNTRTYNELI 435
Query: 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280
+ +C + N+ +A V++KM + PDVVTYN++ ++G D A ++ M G+
Sbjct: 436 KGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340
P+ T +I CK +++EA ++++ GV+PN+V++ LI G+ + D +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
L M P+ +T++ +++ G + + + + M K G++P +IL ++
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
Query: 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460
+ + + A M+ SG P+ +TT I +C +G + A ++ KM E+GVSP+L T
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFT 674
Query: 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
+ +L+ GY + Q A ++L+ M+ G P + TFL L K +L
Sbjct: 675 YSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL------------IKHLLEMKY 722
Query: 521 NKERTNEME-------AEEDIPVESLERLYHKEAT--TASYPNLL 556
K++ +E E E D VE LE++ T SY L+
Sbjct: 723 GKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 227/441 (51%), Gaps = 3/441 (0%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG 137
L++ L K EA A+ + ++ G +P L TY T++ L + + S++ ++E+
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
++ D + + +I+A N+ +A++ F +M G+ P TYN+LI+ G+ ++
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 198 KLL-DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256
+LL D++ R+ N PN+ T++ L+ A+ E + EA + +M + PD+ TY+++
Sbjct: 311 RLLSDMIERKIN--PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 257 AYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP 316
+ + D+A+ + M PN T +I G+CK +++E + R M + G+
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
N V +N LI+G + D D ++ M V PD+ITYS +++ G ++K +F
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
+ + K+ ++PD + Y+I+ +G + + E +L ++ G PNV+I+TT+ISG+C
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G + A +F +M E G PN T+ TL+ + E+++ M++ G ST
Sbjct: 549 GLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608
Query: 497 LLLAEARRATGLTKEAKRILS 517
++ L K +LS
Sbjct: 609 SMVINMLHDGRLEKSYLEMLS 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 225/444 (50%), Gaps = 3/444 (0%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG 137
++N L R + A AI +++ G+ PS+VT +LL R + +++ Q+ E G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
PD++ F +++ + EA+ +M G P TY +I G G+P+ ++
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATA 257
LL+ M + G ++ ++ Y+ ++ + C +++ +A N+ +M G++PDV TY+++ +
Sbjct: 226 NLLNKMEK-GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317
G A ++ +M + PN T +I + KEGK+ EA + M + + PN
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 318 LVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
+V +N LI GF + DR D ++ LM PDV+TY+T++N + A + E+F
Sbjct: 345 IVTYNSLINGFC-MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
DM + G+ + Y+ L G+ + + + A+ + M+ G HPN++ + T++ G C +
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G +++A+ VF+ + + + P++ T+ + G +A + ++ + GV P +
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 497 LLLAEARRATGLTKEAKRILSKIK 520
+ GL +EA + K+K
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMK 547
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 637 | ||||||
| 225430029 | 635 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.976 | 0.691 | 0.0 | |
| 147812173 | 635 | hypothetical protein VITISV_033966 [Viti | 0.973 | 0.976 | 0.684 | 0.0 | |
| 224143015 | 552 | predicted protein [Populus trichocarpa] | 0.864 | 0.998 | 0.735 | 0.0 | |
| 296081889 | 608 | unnamed protein product [Vitis vinifera] | 0.930 | 0.975 | 0.663 | 0.0 | |
| 225445222 | 636 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.998 | 0.605 | 0.0 | |
| 356554513 | 632 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 1.0 | 0.602 | 0.0 | |
| 297808589 | 568 | pentatricopeptide repeat-containing prot | 0.874 | 0.980 | 0.585 | 0.0 | |
| 255546465 | 608 | pentatricopeptide repeat-containing prot | 0.907 | 0.950 | 0.587 | 0.0 | |
| 30689969 | 574 | pentatricopeptide repeat-containing prot | 0.874 | 0.970 | 0.577 | 0.0 | |
| 26449475 | 574 | unknown protein [Arabidopsis thaliana] g | 0.874 | 0.970 | 0.575 | 0.0 |
| >gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/622 (69%), Positives = 516/622 (82%), Gaps = 2/622 (0%)
Query: 16 KYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSM 75
++Q G+T VKK + + + K +L+ S+ D Q Q C C++K SCRTVRS
Sbjct: 16 EHQDGTTDVKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSR 75
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
TKLMN +IE+G+PQE Q+I +++IEGGHKPSLVTYTTLLAALTIQK F+SIHSI+SQVEE
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
NGM+PDSIFFNAVINAFSESGNM+EAM FWKMKESG PTTST+NTLIKGYGIAG+PEE
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S KLL+LMS++ NV+PNLRTYNVLVRAWCN+KNI +AWNV++KM ASG++PD VTYNTIA
Sbjct: 196 SQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIA 255
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
TAYAQNGEA QAE +I+EM+++ VQPN RTC III GYCKEGKIKEAL+F MK+ G+
Sbjct: 256 TAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQ 315
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PNLV+FN LIKGF++ +DRDGV+EVL LM+EF V PDVIT+STIMNAWS AGFMDKC+EI
Sbjct: 316 PNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
FDDM KA I+PDAH YSILAKGYVR EPEKAEE+L MI+SGFHPNVVIFTTII+GWCS
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCS 435
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
G M+ AI++F+KMCE G++PNLKTFETL+WGY EARQPW++EE+LQIM+ F V P+K+T
Sbjct: 436 AGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTT 495
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNL 555
LL+AEA RATGL KEA RILS +KN+E T+E + E+ IPV SLE+ Y K +AS+PN
Sbjct: 496 LLLVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQK--PSASFPNQ 553
Query: 556 LQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615
LQ+PN+V SDQKGS +A K+ RM+L D D SLE SW AT S+ L+HSC GAR PIICQK
Sbjct: 554 LQLPNLVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQK 613
Query: 616 QPLGQVGMYSQLANSCTVVFLN 637
Q GQ+ MYSQLA+SC +VFLN
Sbjct: 614 QSHGQLCMYSQLAHSCPLVFLN 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/622 (68%), Positives = 513/622 (82%), Gaps = 2/622 (0%)
Query: 16 KYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSM 75
++Q G+T KK + + + K +L+ S+ D Q Q C C++K SCRTVRS
Sbjct: 16 EHQDGTTDAKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSR 75
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
TKLMN +IE+G+PQE Q+I +++IEGGHKPSLVTYTTLLAALTIQK F+SIHSI+SQVEE
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
NGM+PDSIFFNAVINAFSESGNM+EAM FWKMKESG PTTST+NTLIKGYGIAG+PEE
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S KLL+LMS++ NV+PNLRTYNVLVRAWCN+ NI +AWNV++KM ASG++PD VTYNTIA
Sbjct: 196 SQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIA 255
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
TAYAQNGEA QAE +I+EM+++ VQPN RTC III GYCKEGKIKEAL+F MK+ G+
Sbjct: 256 TAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQ 315
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PNLV+FN LIKGF++ +DRDGV+EVL LM+EF V PDVIT+STIMNAWS AGFMDKC+EI
Sbjct: 316 PNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
FDDM KA I+PDAH YSILAKGYVR EPEKAEE+L MI+SGFHPNVV+FTTII+GWCS
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCS 435
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
G M+ AI++F+KMCE G++PNLKTFETL+WGY EARQPW++EE+LQIM+ F V P+K+T
Sbjct: 436 AGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTT 495
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNL 555
LL+AEA RATGL KEA RILS +KN+E T+E + E+ IPV S E+ Y K +AS+PN
Sbjct: 496 LLLVAEAWRATGLKKEANRILSAVKNEETTHETDREDKIPVGSSEKHYQK--PSASFPNQ 553
Query: 556 LQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615
LQ+PN+V SDQKGS +A K+ RM+L D D SLE SW AT S+ L+HSC GAR PIICQK
Sbjct: 554 LQLPNLVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQK 613
Query: 616 QPLGQVGMYSQLANSCTVVFLN 637
Q GQ+ MYSQLA+SC +VFLN
Sbjct: 614 QSHGQLCMYSQLAHSCPLVFLN 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa] gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/579 (73%), Positives = 483/579 (83%), Gaps = 28/579 (4%)
Query: 60 CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI 119
C FC K+SCRTVRS TKLMN L+E+GKPQEA++IF +LIEGGHKPSL++YTTLLAALT+
Sbjct: 1 CKFCTTKDSCRTVRSRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTM 60
Query: 120 QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTST 179
QKRF+SI+SI+SQVEENGM+PDSIFFNAVINAFSESGNME AM+TFWKM+E+G+ PTTST
Sbjct: 61 QKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTST 120
Query: 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239
YNTLIKGYGIAGKPEESVKLL+LMS+EGNVKPNLRTYNVLVRAWCN+K ITEAWNV++KM
Sbjct: 121 YNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKM 180
Query: 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI 299
ASG++PDVVTYNTIATAYAQ G DQAE VI+EM++NGVQPN RTCGII+SGYCKEG+I
Sbjct: 181 IASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRI 240
Query: 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359
+EALRFA MKE G+HPNLVIFN LIKGFV IMDRDGVDEVL LM+EF V PDVIT+STI
Sbjct: 241 REALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTI 300
Query: 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF 419
MNAWSTAGFM+KC+EIFDDM KAGI+PDAHAYSILAKGYVR QEPEKAEELL TMI+SGF
Sbjct: 301 MNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGF 360
Query: 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479
PNVVIFTT+ISGWCS G MD A+ VFDKMC+ G+SPNLKTFETL+WG++EARQPW+AEE
Sbjct: 361 QPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEE 420
Query: 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEA-EEDIPVES 538
ILQIM F V P+KST LL+AEA RATG+TKEA R+L KE TN EA E++IPV +
Sbjct: 421 ILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLLGTRNRKEMTNRKEALEKEIPVGN 480
Query: 539 LERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMY 598
LE+LY K+ Y N+LQIP+ CSW AT SM
Sbjct: 481 LEKLYQKQTEGVLYSNILQIPST---------------------------CSWLATGSMS 513
Query: 599 LSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFLN 637
LSHSCK G RLPIIC+KQ Q GMY QLA SCT VFLN
Sbjct: 514 LSHSCKFGLRLPIICRKQSQAQHGMYGQLAQSCTAVFLN 552
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/622 (66%), Positives = 496/622 (79%), Gaps = 29/622 (4%)
Query: 16 KYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSM 75
++Q G+T VKK + + + K +L+ S+ D Q Q C C++K SCRTVRS
Sbjct: 16 EHQDGTTDVKKEEVEALQTEVKRRDGKHELHPVSQSADPQSQVRCISCLSKTSCRTVRSR 75
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
TKLMN +IE+G+PQE Q+I +++IEGGHKPSLVTYTTLLAALTIQK F+SIHSI+SQVEE
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
NGM+PDSIFFNAVINAFSESGNM+EAM FWKMKESG PTTST+NTLIKGYGIAG+PEE
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S KLL+LMS++ NV+PNLRTYNVLVRAWCN+KNI +AWNV++KM ASG++PD VTYNTIA
Sbjct: 196 SQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIA 255
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315
TAYAQNGEA QAE +I+EM+++ VQPN RTC III GYCKEGKIKEAL+F MK+ G+
Sbjct: 256 TAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQ 315
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375
PNLV+FN LIKGF++ +DRDGV+EVL LM+EF V PDVIT+STIMNAWS AGFMDKC+EI
Sbjct: 316 PNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375
Query: 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435
FDDM KA I+PDAH YSILAKGYVR EPEKAEE+L MI+SGFHPNVVIFTTII+GWCS
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCS 435
Query: 436 DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495
G M+ AI++F+KMCE G++PNLKTFETL+WGY EARQPW++EE+LQIM+ F V P+K+T
Sbjct: 436 AGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTT 495
Query: 496 FLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNL 555
LL+AEA RATGL KEA RILS +KN+E T+E + E+ IPV SLE+ Y K +AS+PN
Sbjct: 496 LLLVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQK--PSASFPNQ 553
Query: 556 LQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615
LQ+PN+ SW AT S+ L+HSC GAR PIICQK
Sbjct: 554 LQLPNL---------------------------SSWTATRSLSLTHSCTFGARSPIICQK 586
Query: 616 QPLGQVGMYSQLANSCTVVFLN 637
Q GQ+ MYSQLA+SC +VFLN
Sbjct: 587 QSHGQLCMYSQLAHSCPLVFLN 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222 [Vitis vinifera] gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/636 (60%), Positives = 475/636 (74%), Gaps = 1/636 (0%)
Query: 1 MGKFAEGKAFLQTDDKYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHC 60
MG F + K K++ G+ KK Q ++ EK QL S S DSQ Q+ C
Sbjct: 1 MGGFGKEKVHPVIMSKHRDGTNTSKKRV-QASSVMESPLHEKDQLQSVSTSMDSQIQSRC 59
Query: 61 SFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQ 120
C+ SCRTVRS TKLMN LIE+GKPQEAQ IFN+L E GH+P+L+TYTTLLAALT Q
Sbjct: 60 LVCLGNNSCRTVRSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQ 119
Query: 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTY 180
KRF SI S++S++E+NG+ PDS+FFNA+INAFSESGN++EAM F KMK+ G PTTST+
Sbjct: 120 KRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTF 179
Query: 181 NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240
NTLIKGYG AG PEE +KLLDLMS+E NVKPN RT+N L+RAWCN+K ITEAWNV++KMA
Sbjct: 180 NTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMA 239
Query: 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300
ASG++PDVVTYNT+A AYAQNGE +AE +I+EM++N V PN RTCGIII+GYCKEGK+K
Sbjct: 240 ASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMK 299
Query: 301 EALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360
+ALRF M+ YGVHPNLVIFN LIKGF++I D DGVDE L LM+EF V PDV+T+STIM
Sbjct: 300 DALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIM 359
Query: 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420
NAWS+ G MDKC+EIFDDM KAGI+PD HA+SILAKGYVR EPEKAE LL M +SG
Sbjct: 360 NAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQ 419
Query: 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480
PNVVIFTTIISGWCS G M+ A V++KMCE G+ PNLKTFETL+WGY EA++P +AEE+
Sbjct: 420 PNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEEL 479
Query: 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLE 540
LQIM+ GV P KST L+A+A A GL EAKRI + ++ + E+D+ ESLE
Sbjct: 480 LQIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKNDVEEAPKVMISTKEDDVAAESLE 539
Query: 541 RLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLS 600
R+Y K+ ASY +++Q+P +V +DQ GS AA + RM+++ S E W AT SM+L+
Sbjct: 540 RIYQKQNLKASYSDIVQVPGIVMTDQNGSTAANIRSRMIMKGPGSPPENLWTATKSMFLA 599
Query: 601 HSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFL 636
+ R IC+ Q GQVG+ Q NSC +VFL
Sbjct: 600 QASGFRVRPSFICRTQFQGQVGVCGQCVNSCRLVFL 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/637 (60%), Positives = 471/637 (73%), Gaps = 5/637 (0%)
Query: 1 MGKFAEGKAFLQTDDKYQSGSTIVKKGWGQMIPAKKNNPGEKKQLYSNSKPTDSQPQTHC 60
MGK T + QSG+ +KKG K N+ K + +K T+S Q C
Sbjct: 1 MGKPGNDDTDCGTRSRKQSGNNNMKKGLFHSEFDKGNHFDGKNHMNEITKATNSGSQPSC 60
Query: 61 SFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQ 120
+FCM K C+ VRS TK+MN LI+ GKPQEA IF NLIEGGH+PSL TYTTLL ALT Q
Sbjct: 61 TFCMGKNDCQIVRSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQ 120
Query: 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTY 180
K F IHSI+S VEE M PDSIFFNA+INAF+ESGNME+A KMKESGL P+ TY
Sbjct: 121 KYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTY 180
Query: 181 NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240
NTLIKGYGIAGKP+ES+KLLDLMS EGNVKPNL+TYN+L+RA C +NI+EAWNV++KM
Sbjct: 181 NTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMT 240
Query: 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300
ASGM+PDVVT+NTIATAYAQNG+ QAE +I+EM+ N ++PN RTC IIISGYC+EGK++
Sbjct: 241 ASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQ 300
Query: 301 EALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360
EALRF MK+ G+ PNL++ N L+ GFV++MDRDGVDEVL LM+EF++ PDVITYSTIM
Sbjct: 301 EALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIM 360
Query: 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420
NAWS AGF++KCKEI+++M K+G+KPDAHAYSILAKGYVR QE EKAEE+L M +SG H
Sbjct: 361 NAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVH 420
Query: 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480
PNVVIFTT+ISGWCS G MD A+ VFDKM E GVSPNLKTFETL+WGY+EA+QPW+AE +
Sbjct: 421 PNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGM 480
Query: 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLE 540
LQIM+ F V P+KST LL+AEA R G + AK +L +K K N + +++ P + E
Sbjct: 481 LQIMEEFHVQPKKSTILLVAEAWRFAGFKERAKTLLRTVKAK-MANSIGKDDNKPAKMSE 539
Query: 541 RLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLS 600
++Y K T A + +LLQIP++ S+DQKGSA ++ R LLRD ++E T
Sbjct: 540 KIYQKPHTNAPFCSLLQIPSISSTDQKGSALTSRRNRRLLRDG--AVETLLLTTKFKCHP 597
Query: 601 HSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFLN 637
C+ G I+ KQ GQ G Y Q ANSCT VFLN
Sbjct: 598 QICRYGEGFSIM-GKQFQGQHGTY-QFANSCTAVFLN 632
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/603 (58%), Positives = 435/603 (72%), Gaps = 46/603 (7%)
Query: 41 EKKQLYSNSKPTDSQPQTH--CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNL 98
EKK++ S+P S P + C C SCRTVRS TKLMN LIERG+P EAQ +F L
Sbjct: 6 EKKKVLPMSEPEKSTPIKYRFCKSCGEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTL 65
Query: 99 IEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158
E GH+PSL++YTTLLAA+T+QK++ S+ SI+S+VE++G PDSIFFNAVINAFSESGNM
Sbjct: 66 AETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQSGTKPDSIFFNAVINAFSESGNM 125
Query: 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN--VKPNLRTY 216
E+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S LLDLM E N V+PN+RT+
Sbjct: 126 EDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLEESNVDVRPNIRTF 185
Query: 217 NVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE--M 274
NVLV+AWC +K + EAW V+HKM G++PD VTYNTIAT Y Q GE +AE +VE +
Sbjct: 186 NVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMV 245
Query: 275 EHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334
+PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFVE+MDR
Sbjct: 246 MKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDR 305
Query: 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSIL 394
DG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAHAYSIL
Sbjct: 306 DGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSIL 365
Query: 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454
AKGYVR +EP+KAEELL T+I PNVVIFTT+ISGWCS GSMD A+ VF+KMC+ GV
Sbjct: 366 AKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWCSSGSMDDAMRVFNKMCKFGV 424
Query: 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKR 514
SPN+KTFETLMWGY E +QPW+AEE+LQ+M+ FGV P+ STFLLLAEA R GLT E+ +
Sbjct: 425 SPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGFGVKPENSTFLLLAEAWRVAGLTDESNK 484
Query: 515 ILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALK 574
++ +K K DI + LE+LY K+++ +S NLLQIP V + +A A
Sbjct: 485 AINALKCK----------DIEIAKLEKLYQKQSSGSSL-NLLQIP--VGKRELPTAKA-- 529
Query: 575 KGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTVV 634
M LS +CK GAR+PIICQKQ Q G+ Q +SCT V
Sbjct: 530 ----------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVHSCT-V 565
Query: 635 FLN 637
FLN
Sbjct: 566 FLN 568
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/601 (58%), Positives = 443/601 (73%), Gaps = 23/601 (3%)
Query: 41 EKKQLYSNSKPTDSQPQTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIE 100
EK Q S DS+ Q+ C C+ K SCRTV S TKLMN LI +GKP EA IF+NL+E
Sbjct: 27 EKDQFQLISPSVDSRVQSRCPVCLGKNSCRTVHSRTKLMNILIGKGKPHEANLIFDNLVE 86
Query: 101 GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160
GH+P+L+TYTTL+AALT K F SI ++S+VEENGM PDSI +NA+INAFSESGN++E
Sbjct: 87 DGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKE 146
Query: 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220
AM F KMK++G PTTST+NTLIKGYG AGKPEE +K+L LMS +G+VKPN RTYN+LV
Sbjct: 147 AMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILV 206
Query: 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280
RAWC++KNI EAWNV+HKM ASG++PDVVTYN +A AYAQ GE +AE++I+EM++ V
Sbjct: 207 RAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVA 266
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340
PN RTCGII++GYCKEG + EALRF MKE GVHPNLVIFN LIKGF++I D DGVDE
Sbjct: 267 PNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEA 326
Query: 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
L LM+E+ V PDVIT+STIMNAWS+AG MDKC+EIF+DM KAGI+PD HA+SILAKGYVR
Sbjct: 327 LTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVR 386
Query: 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460
E E AE +L +M +SG PNVVI TTIISGWCS G M+ A V++KMCE G+SPNLKT
Sbjct: 387 AGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKT 446
Query: 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
FETL+WGY+EARQP +AEE+LQ+M+ GV P+KST L+A+A R GL EAKRI K
Sbjct: 447 FETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAWRNIGLLCEAKRI---TK 503
Query: 521 NKERTNEMEAE---EDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALK-KG 576
+E E+ A+ +IPVESLER+Y + +ASY LQI V + Q GS +A+ +
Sbjct: 504 IEEEDEELYADCKRGEIPVESLERIYRDQNGSASYLKTLQISGEVMTKQNGSTSAVNIRS 563
Query: 577 RMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTVVFL 636
+++LR S SC++ + IIC++ V M +L NSC ++ +
Sbjct: 564 QLVLRRYRS----------------SCQNRKQPLIICRQHCRHCVRMCGKLINSCGMIAI 607
Query: 637 N 637
+
Sbjct: 608 S 608
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/608 (57%), Positives = 435/608 (71%), Gaps = 51/608 (8%)
Query: 41 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
EKK++ S+P S P C C+ SCRTVRS TKLMN LIERG+P EAQ
Sbjct: 7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQT 66
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
+F L E GH+PSL++YTTLLAA+T+QK++ SI SI+S+VE++G DSIFFNAVINAFS
Sbjct: 67 VFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFS 126
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK--P 211
ESGNME+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S +LLDLM EGNV P
Sbjct: 127 ESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGP 186
Query: 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271
N+RT+NVLV+AWC +K + EAW V+ KM G++PD VTYNTIAT Y Q GE +AE +
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEV 246
Query: 272 VE--MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329
VE + +PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFV
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389
E+MDRDG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAH
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
AYSILAKGYVR +EP+KAEELL T+I PNVVIFTT+ISGWCS+GSMD A+ VF+KM
Sbjct: 367 AYSILAKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKM 425
Query: 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
C+ GVSPN+KTFETLMWGY E +QPW+AEE+LQ+M+ GV P+ STFLLLAEA R GLT
Sbjct: 426 CKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT 485
Query: 510 KEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGS 569
E+ + ++ +K K DI + LE+LY K+++ +S+ NLLQIP V + +
Sbjct: 486 DESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPT 532
Query: 570 AAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLAN 629
A A M LS +CK GAR+PIICQKQ Q G+ Q +
Sbjct: 533 AKA------------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVH 567
Query: 630 SCTVVFLN 637
SCT VFL+
Sbjct: 568 SCT-VFLS 574
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana] gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/608 (57%), Positives = 434/608 (71%), Gaps = 51/608 (8%)
Query: 41 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
EKK++ S+P S P C C+ SCRTVRS TKLMN LIERG+P EAQ
Sbjct: 7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQT 66
Query: 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
+F L E GH+PSL++YTTLLAA+T+QK++ SI SI+S+VE++G DSIFFNAVINAFS
Sbjct: 67 VFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFS 126
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK--P 211
ESGNME+A+ KMKE GL PTTSTYNTLIKGYGIAGKPE S +LLDLM EGNV P
Sbjct: 127 ESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGP 186
Query: 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271
N+RT+NVLV+AWC +K + EAW V+ KM G++PD VTYNTIAT Y Q GE +AE +
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEV 246
Query: 272 VE--MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329
VE + +PNGRTCGI++ GYC+EG++++ LRF R MKE V NLV+FN LI GFV
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389
E+MDRDG+DEVL LMKE V DVITYST+MNAWS+AG+M+K ++F +M KAG+KPDAH
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
AYSILAKGYVR + P+KAEELL T+I PNVVIFTT+ISGWCS+GSMD A+ VF+KM
Sbjct: 367 AYSILAKGYVRAKGPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKM 425
Query: 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509
C+ GVSPN+KTFETLMWGY E +QPW+AEE+LQ+M+ GV P+ STFLLLAEA R GLT
Sbjct: 426 CKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT 485
Query: 510 KEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGS 569
E+ + ++ +K K DI + LE+LY K+++ +S+ NLLQIP V + +
Sbjct: 486 DESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPT 532
Query: 570 AAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLAN 629
A A M LS +CK GAR+PIICQKQ Q G+ Q +
Sbjct: 533 AKA------------------------MNLS-ACKLGARVPIICQKQSQAQFGISGQFVH 567
Query: 630 SCTVVFLN 637
SCT VFL+
Sbjct: 568 SCT-VFLS 574
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 637 | ||||||
| TAIR|locus:1005716169 | 831 | AT5G21222 [Arabidopsis thalian | 0.772 | 0.592 | 0.535 | 7e-141 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.596 | 0.671 | 0.288 | 1.3e-52 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.709 | 0.755 | 0.272 | 4.6e-50 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.722 | 0.722 | 0.276 | 4.6e-50 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.618 | 0.527 | 0.285 | 8.5e-49 | |
| TAIR|locus:2039415 | 743 | AT2G16880 "AT2G16880" [Arabido | 0.678 | 0.581 | 0.270 | 2.3e-48 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.692 | 0.718 | 0.25 | 1.2e-47 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.729 | 0.508 | 0.254 | 1.6e-47 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.687 | 0.696 | 0.258 | 1.6e-47 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.733 | 0.741 | 0.254 | 5.4e-47 |
| TAIR|locus:1005716169 AT5G21222 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 266/497 (53%), Positives = 357/497 (71%)
Query: 35 KKNNPGEKKQLYSNSKPTDSQPQTH-CSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQA 93
K+ N + + ++ +S+ Q ++ C C +C VRS TKLMN LIERG+PQEA +
Sbjct: 281 KEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHS 340
Query: 94 IFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153
IFN LIE GHKPS QK F+S+ S++S+VE+NG+ PD+I FNA+INA S
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400
Query: 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL 213
ESGN+++AM F KMKESG PT ST+NTLIKGYG GK EES +LLD+M R+ ++PN
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460
Query: 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV- 272
RT N+LV+AWCN++ I EAWN+++KM + G+KPDVVT+NT+A AYA+ G AE++I+
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520
Query: 273 EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332
M HN V+PN RTCG I++GYC+EGK++EALRF MKE GVHPNL +FN LIKGF+ I
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580
Query: 333 DRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392
D DGV EV+ LM+EF V PDV+T+ST+MNAWS+ G M +C+EI+ DM + GI PD HA+S
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640
Query: 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452
ILAKGY R EPEKAE++L M + G PNVVI+T IISGWCS G M +A++V+ KMC
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI 700
Query: 453 -GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTK- 510
G+SPNL T+ETL+WG+ EA+QPW+AEE+L+ M+ V P + T L+A+ ++ G++
Sbjct: 701 VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIGVSNS 760
Query: 511 -EAKRILSKIKNKERTN 526
+A + S + N
Sbjct: 761 NDANTLGSSFSTSSKLN 777
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 111/385 (28%), Positives = 213/385 (55%)
Query: 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS 178
I+K F+ ++ ++ E G P+ + + +I+ + G +E+A D F++M + GL
Sbjct: 179 IEKSFD----LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANER 234
Query: 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238
TY LI G G ++ ++ + M +G V PNL TYN ++ C + +A+ V +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 239 MAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298
M G+ ++VTYNT+ + + ++A +V+ +M+ +G+ PN T +I G+C GK
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST 358
+ +AL R +K G+ P+LV +N+L+ GF D G +++ M+E + P +TY+
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418
+++ ++ + M+K ++ M + G+ PD H YS+L G+ + + +A L +M+E
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478
PN VI+ T+I G+C +GS RA+++ +M E ++PN+ ++ ++ + R+ AE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533
Query: 479 EILQIMKAFGVHPQKSTFLLLAEAR 503
+++ M G+ P S L++ A+
Sbjct: 534 RLVEKMIDSGIDPSTSILSLISRAK 558
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 125/458 (27%), Positives = 224/458 (48%)
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVE 134
T L+ GK ++A I ++EG G P + I++ +S ++
Sbjct: 141 TTLIRGFCRLGKTRKAAKILE-ILEGSGAVPDVITYNVMISGYC---KAGEINNALSVLD 196
Query: 135 ENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE 194
+ PD + +N ++ + +SG +++AM+ +M + P TY LI+
Sbjct: 197 RMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVG 256
Query: 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254
++KLLD M R+ P++ TYNVLV C E + EA ++ M +SG +P+V+T+N I
Sbjct: 257 HAMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314
+ G AE+++ +M G P+ T I+I+ C++G + A+ M ++G
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375
Query: 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374
PN + +N L+ GF + D E L M PD++TY+T++ A G ++ E
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435
Query: 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434
I + + G P Y+ + G + + KA +LL M P+ + +++++ G
Sbjct: 436 ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLS 495
Query: 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494
+G +D AI+ F + G+ PN TF ++M G ++RQ RA + L M G P ++
Sbjct: 496 REGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNET 555
Query: 495 TFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEE 532
++ +L E G+ KEA +L+++ NK + AE+
Sbjct: 556 SYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQ 593
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 129/467 (27%), Positives = 233/467 (49%)
Query: 61 SFCMNKE----SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXX 116
SFC + S R + +L + L++ K +A +F ++I P+
Sbjct: 39 SFCCERGFSAFSDRNLSYRERLRSGLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSA 97
Query: 117 XXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT 176
K+++ + ++ Q+E G+ + + +IN F + A K+ + G P
Sbjct: 98 IAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPN 157
Query: 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236
T T++TLI G + G+ E+++L+D M G+ KP+L T N LV C EA ++
Sbjct: 158 TITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSGKEAEAMLLI 216
Query: 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE 296
KM G +P+ VTY + ++G+ A E++ +ME ++ + III G CK
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276
Query: 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITY 356
G + A M+ G+ N++ +N+LI GF D ++L M + ++NP+V+T+
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416
S +++++ G + + +E+ +M GI PD Y+ L G+ +E +KA +++ M+
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476
G PN+ F +I+G+C +D +E+F KM GV + T+ TL+ G+ E +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 477 AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI-KNK 522
A+E+ Q M + V P T+ +L + G +++A I KI K+K
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 113/396 (28%), Positives = 208/396 (52%)
Query: 128 SIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186
SI+ + +G P + +NAV++A S N+ A + F +M ES ++P TYN LI+G
Sbjct: 155 SIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRG 214
Query: 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246
+ AG + ++ L D M +G + PN+ TYN L+ +C + I + + ++ MA G++P
Sbjct: 215 FCFAGNIDVALTLFDKMETKGCL-PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP 273
Query: 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306
++++YN + + G + V+ EM G + T +I GYCKEG +AL
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366
M +G+ P+++ + LI + + + E L M+ + P+ TY+T+++ +S
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Query: 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426
G+M++ + +M G P Y+ L G+ + E A +L M E G P+VV +
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486
+T++SG+C +D A+ V +M E G+ P+ T+ +L+ G+ E R+ A ++ + M
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 487 FGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522
G+ P + T+ L A G ++A ++ +++ K
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
|
|
| TAIR|locus:2039415 AT2G16880 "AT2G16880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 118/436 (27%), Positives = 226/436 (51%)
Query: 91 AQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQ-VEENGMDPDSIFFNAVI 149
A+ +F+++++ G + ++ + ++ + V E ++PD++ +N ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV 209
A S+ G + + + MK++GL P TYN L+ GY G +E+ ++++LM ++ NV
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM-KQTNV 306
Query: 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269
P+L TYN+L+ CN ++ E +M M + ++PDVVTYNT+ + G + +A +
Sbjct: 307 LPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARK 366
Query: 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGF 328
++ +ME++GV+ N T I + CKE K + R + + + +G P++V ++ LIK +
Sbjct: 367 LMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAY 426
Query: 329 VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388
+++ D G E++ M + + + IT +TI++A +D+ + + K G D
Sbjct: 427 LKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE 486
Query: 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDK 448
Y L G+ RE++ EKA E+ M + P V F ++I G C G + A+E FD+
Sbjct: 487 VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDE 546
Query: 449 MCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508
+ E G+ P+ TF +++ GY + + +A E P T +L G+
Sbjct: 547 LAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGM 606
Query: 509 TKEAKRILSK-IKNKE 523
T++A + I+ +E
Sbjct: 607 TEKALNFFNTLIEERE 622
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 111/444 (25%), Positives = 219/444 (49%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENG 137
++N L R + A AI +++ G+ PS R + +++ Q+ E G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
PD++ F +++ + EA+ +M G P TY +I G G+P+ ++
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATA 257
LL+ M + G ++ ++ Y+ ++ + C +++ +A N+ +M G++PDV TY+++ +
Sbjct: 226 NLLNKMEK-GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317
G A ++ +M + PN T +I + KEGK+ EA + M + + PN
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 318 LVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
+V +N LI GF + DR D ++ LM PDV+TY+T++N + A + E+F
Sbjct: 345 IVTYNSLINGFC-MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
DM + G+ + Y+ L G+ + + + A+ + M+ G HPN++ + T++ G C +
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G +++A+ VF+ + + + P++ T+ + G +A + ++ + GV P +
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 497 LLLAEARRATGLTKEAKRILSKIK 520
+ GL +EA + K+K
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMK 547
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 119/468 (25%), Positives = 225/468 (48%)
Query: 53 DSQPQTHCSFCMNKESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXX 112
D Q + +K C + + K++N + G +EA + ++E G P
Sbjct: 200 DEMKQVYMEMLEDKV-CPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258
Query: 113 XXXXXXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESG 172
+K +S + +++ G + + + +I+ + ++EAMD F KMK+
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE 318
Query: 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232
PT TY LIK + + E++ L+ M G +KPN+ TY VL+ + C++ +A
Sbjct: 319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG-IKPNIHTYTVLIDSLCSQCKFEKA 377
Query: 233 WNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISG 292
++ +M G+ P+V+TYN + Y + G + A +V+ ME + PN RT +I G
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437
Query: 293 YCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD 352
YCK + +A+ M E V P++V +N LI G + D +L+LM + + PD
Sbjct: 438 YCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412
TY++++++ + +++ ++FD + + G+ P+ Y+ L GY + + ++A +L
Sbjct: 497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556
Query: 413 TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472
M+ PN + F +I G C+DG + A + +KM + G+ P + T L+ +
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDG 616
Query: 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520
A Q M + G P T+ + G +A+ +++K++
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 114/441 (25%), Positives = 220/441 (49%)
Query: 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENG 137
L++ L K EA A+ + ++ G +P + + S++ ++E+
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250
Query: 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197
++ D + + +I+A N+ +A++ F +M G+ P TYN+LI+ G+ ++
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 198 KLL-DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256
+LL D++ R+ + PN+ T++ L+ A+ E + EA + +M + PD+ TY+++
Sbjct: 311 RLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 257 AYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP 316
+ + D+A+ + M PN T +I G+CK +++E + R M + G+
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376
N V +N LI+G + D D ++ M V PD+ITYS +++ G ++K +F
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436
+ + K+ ++PD + Y+I+ +G + + E +L ++ G PNV+I+TT+ISG+C
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496
G + A +F +M E G PN T+ TL+ + E+++ M++ G ST
Sbjct: 549 GLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608
Query: 497 LLLAEARRATGLTKEAKRILS 517
++ L K +LS
Sbjct: 609 SMVINMLHDGRLEKSYLEMLS 629
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 120/472 (25%), Positives = 223/472 (47%)
Query: 43 KQLYSNSKPTDSQPQ-THCSFCMNKESCRTVR-SMTKLMNSLIERGKPQEAQAIFNNLIE 100
+ L K + P +HCSF + S VR K+ + + K +A +F ++++
Sbjct: 17 RSLLGKGKCGTAPPSFSHCSFWVRDFS--GVRYDYRKISINRLNDLKLDDAVNLFGDMVK 74
Query: 101 GGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160
PS +F+ + S+ Q++ G+ + ++ +IN F +
Sbjct: 75 SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSL 134
Query: 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220
A+ KM + G P T N+L+ G+ + ++V L+ M G +P+ T+N L+
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG-YQPDSFTFNTLI 193
Query: 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280
+EA ++ +M G +PD+VTY + + G+ D A ++ +ME ++
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340
P II C + +AL M G+ PN+V +N LI+ +
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
L+ M E ++NP+V+T+S +++A+ G + + ++++D+M K I PD YS L G+
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373
Query: 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460
++A+ + MI PNVV + T+I G+C +D +E+F +M + G+ N T
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433
Query: 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEA 512
+ TL+ G+ +AR+ A+ + + M + GV P T+ +L + G + A
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GZ63 | PP397_ARATH | No assigned EC number | 0.5773 | 0.8744 | 0.9703 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 637 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-31
Identities = 103/487 (21%), Positives = 193/487 (39%), Gaps = 86/487 (17%)
Query: 95 FNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154
E + + + L +K +S + +S ++N D+ +
Sbjct: 292 LYTFYEEKQSRAKSSRLPNVKGL--RKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAAS 349
Query: 155 SGNMEEAMDTFWKMKESGLTPTTST------YNTLIKGYGIAGKPEESVKLLDLMSR--- 205
E ++ + G++ + YN L++ G+ ++ + LL+ M +
Sbjct: 350 DVEEENSLAAY----NGGVSGKRKSPEYIDAYNRLLR----DGRIKDCIDLLEDMEKRGL 401
Query: 206 -----------------EGNVK-----------PNLRTYNVLVRAWCNEKNITEAWNVMH 237
+ VK P L T+N+L+ + ++I A V+
Sbjct: 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461
Query: 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297
+ +G+K D Y T+ + A++G+ D EV EM + GV+ N T G +I G + G
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMK--EFRVNPDVIT 355
++ +A M+ V P+ V+FN LI + D +VLA MK ++PD IT
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIK------------------------------ 385
+M A + AG +D+ KE++ + + IK
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 386 -----PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440
PD +S L + +KA E+L + G V +++++ + +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF--LL 498
+A+E+++ + + P + T L+ E Q +A E+L MK G+ P T+ LL
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 499 LAEARRA 505
+A R+
Sbjct: 762 VASERKD 768
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-31
Identities = 84/356 (23%), Positives = 162/356 (45%), Gaps = 3/356 (0%)
Query: 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164
P+L T+ L++ + + ++ V+E G+ D + +I+ ++SG ++ +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224
F +M +G+ T+ LI G AG+ ++ +M R NVKP+ +N L+ A
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACG 553
Query: 225 NEKNITEAWNVMHKMAASG--MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN 282
+ A++V+ +M A + PD +T + A A G+ D+A+EV + ++
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 283 GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342
I ++ ++G AL MK+ GV P+ V F+ L+ D D E+L
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ 402
++ + ++YS++M A S A K E+++D+ ++P + L
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 403 EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL 458
+ KA E+L M G PN + ++ ++ D +++ + E G+ PNL
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-19
Identities = 91/383 (23%), Positives = 162/383 (42%), Gaps = 21/383 (5%)
Query: 81 SLIER----GKPQEAQAIFNNL-IEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
S IE+ G+ +EA +F L TY L+ A K + ++ VE
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
+G +PD N V+ + G + +A F +M E L ++ T+I G AG E
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYRE 207
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
+ L M +G+ RT+ V++RA + + + +G+ D +
Sbjct: 208 AFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 256 TAYAQNGEADQAEEVIVEM-EHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314
Y++ G+ + A V M E V N +++GY G +EAL M++ GV
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNS-----MLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374
+ F+++I+ F + + + A + D++ + +++ +S G M+ +
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434
+FD M + + +++ L GY KA E+ MI G PN V F ++S
Sbjct: 382 VFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 435 SDGSMDRAIEVFDKMCE-HGVSP 456
G ++ E+F M E H + P
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 4e-18
Identities = 80/377 (21%), Positives = 155/377 (41%), Gaps = 47/377 (12%)
Query: 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG 243
I+ G+ E+++L +++ TY+ LV A K+I V + +SG
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303
+PD N + + + G A + EM + N + G II G G +EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF 209
Query: 304 RFARTMKEYGVHPNLVIFNLLIK-------------------------------GFVEIM 332
R M E G F ++++ +++
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 333 DRDG-VDE---VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388
+ G +++ V M E + +++++ ++ G+ ++ ++ +M +G+ D
Sbjct: 270 SKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDK 448
+SI+ + + R E A++ +I +GF ++V T ++ + G M+ A VFD+
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 449 MCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508
M NL ++ L+ GY + +A E+ + M A GV P TFL + A R +GL
Sbjct: 386 MPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 509 TKEAKRILSKIKNKERT 525
+++ I + R
Sbjct: 442 SEQGWEIFQSMSENHRI 458
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-18
Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Query: 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163
P +T L+ A + + + + E + + +N+ S+ G+ + A+
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223
+ MK+ G+ P ++ L+ G AG +++ ++L ++G +K +Y+ L+ A
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGAC 694
Query: 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG 283
N KN +A + + + ++P V T N + TA + + +A EV+ EM+ G+ PN
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI 325
T I++ ++ L KE G+ PNLV+ +
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-17
Identities = 86/406 (21%), Positives = 162/406 (39%), Gaps = 68/406 (16%)
Query: 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL 200
D I +NA+I+ + E+G E ++ F+ M+E + P T ++I + G ++
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 201 DLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260
+ + G ++ N L++ + + + EA V +M D V++ + + Y +
Sbjct: 312 GYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEK 366
Query: 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVI 320
NG D+A E ME + V P+ T ++S G + ++ + G+ +V+
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 321 FNLLIKGFVEIMDRDGVDEVLALMKE------------FRVN------------------ 350
N LI+ + + D EV + E R+N
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486
Query: 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-------------------------- 384
P+ +T ++A + G + KEI + + GI
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 385 ----KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440
+ D +++IL GYV + A EL M+ESG +P+ V F +++ CS M
Sbjct: 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRSGMV 605
Query: 441 R-AIEVFDKM-CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484
+E F M ++ ++PNLK + ++ A + A + M
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 47/334 (14%)
Query: 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSI 129
R + S ++ L++ G +EA A+F + E G T+ +L A + +
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246
Query: 130 MSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189
V + G+ D+ A+I+ +S+ G++E+A F M E TT +N+++ GY +
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYAL 302
Query: 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249
G EE++ L M R+ V + T+++++R + + A + +G D+V
Sbjct: 303 HGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 250 TYNTIATAYAQNGEADQAEEVIVEMEH-NGVQPNGRTCGIIISGYCKEGKIKEALRFART 308
+ Y++ G + A V M N + N +I+GY G+ +A+
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA-----LIAGYGNHGRGTKAVEMFER 416
Query: 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGF 368
M GV PN V F LA +++A +G
Sbjct: 417 MIAEGVAPNHVTF-------------------LA----------------VLSACRYSGL 441
Query: 369 MDKCKEIFDDMGKA-GIKPDAHAYSILAKGYVRE 401
++ EIF M + IKP A Y+ + + RE
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 74/345 (21%), Positives = 143/345 (41%), Gaps = 40/345 (11%)
Query: 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK---------------GYG 188
N+ + A G +E+A+ M+E + Y L +
Sbjct: 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112
Query: 189 IAGKPEESVKL----LDLMSREGNV-----------KPNLRTYNVLVRAWCNEKNITEAW 233
++ P V+L L + R G + + +L ++NVLV + EA
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGY 293
+ H+M +G++PDV T+ + + + EV + G + + +I+ Y
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 294 CKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEI-MDRDGVDEVLALMKEFRVNPD 352
K G + A M + + +N +I G+ E +G+ E+ M+E V+PD
Sbjct: 233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGL-ELFFTMRELSVDPD 287
Query: 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412
++T +++++A G +E+ + K G D + L + Y+ +AE++
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 413 TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457
M + V +T +ISG+ +G D+A+E + M + VSP+
Sbjct: 348 RMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 7e-14
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 246 PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295
PDVVTYNT+ Y + G+ ++A ++ EM+ G++PN T I+I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400
PDV+TY+T+++ + G +++ ++F++M K GIKP+ + YSIL G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468
P+VV + T+I G+C G ++ A+++F++M + G+ PN+ T+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187
PD + +N +I+ + + G +EEA+ F +MK+ G+ P TY+ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 41/179 (22%), Positives = 90/179 (50%), Gaps = 1/179 (0%)
Query: 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135
T +NS ++G A +I++++ + G KP V ++ L+ + I+ +
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
G+ ++ +++++ A S + N ++A++ + +K L PT ST N LI + +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254
++++L M R G + PN TY++L+ A + + +++ + G+KP++V I
Sbjct: 738 ALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 7e-12
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 175 PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225
P TYNTLI GY GK EE++KL + M + G +KPN+ TY++L+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 5e-11
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260
P++ TYN L+ +C + + EA + ++M G+KP+V TY+ + +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 1e-10
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449
G P+VV + T+I G C G +D A+E+ D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 136 NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195
N + D + +N ++ + G A++ F +M ESG+ P T+ +L+ +G +
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
++ M + ++ PNL+ Y +V +TEA+N ++KM + PD + +
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL 664
Query: 256 TA-----YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310
A + + GE A + I E++ N V C + Y GK E R +TM+
Sbjct: 665 NACRIHRHVELGEL--AAQHIFELDPNSVGYYILLCNL----YADAGKWDEVARVRKTMR 718
Query: 311 EYGV------------------------HPNLVIFNLLIKGFVEIMDRDG 336
E G+ HP + N +++GF E M G
Sbjct: 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGF 328
P+ T +I GYCK+GK++EAL+ MK+ G+ PN+ +++LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 65/331 (19%), Positives = 132/331 (39%), Gaps = 52/331 (15%)
Query: 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHS 128
+ S T +++ + G P +A + + + P +T ++L+A +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188
+ E G+ + NA+I +S+ +++A++ F + E + TS +I G
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS----IIAGLR 466
Query: 189 IAGKPEESVKLLDLMSREGNVKPN---------------------------LRT------ 215
+ + E++ M +KPN LRT
Sbjct: 467 LNNRCFEALIFFRQM--LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 216 --YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273
N L+ + + AWN + + DVV++N + T Y +G+ A E+
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 274 MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGFVEIM 332
M +GV P+ T ++ + G + + L + +M+E Y + PNL + + V+++
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV----VDLL 635
Query: 333 DRDG-VDEVLALMKEFRVNPDVITYSTIMNA 362
R G + E + + + PD + ++NA
Sbjct: 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 65/311 (20%), Positives = 131/311 (42%), Gaps = 38/311 (12%)
Query: 136 NGMD-PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE 194
+ M+ D++ + A+I+ + ++G ++A++T+ M++ ++P T +++ G +
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254
VKL +L R+G + + N L+ + K I +A V H + + DV+++ +I
Sbjct: 407 VGVKLHELAERKGLISYVVVA-NALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSI 461
Query: 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRT--------------------------CGI 288
N +A +M ++PN T GI
Sbjct: 462 IAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520
Query: 289 IISGYCKEGKIKEALRFART---MKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALM 344
G+ + +R R ++ H ++V +N+L+ G+V E+ M
Sbjct: 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 345 KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM-GKAGIKPDAHAYSILAKGYVREQE 403
E VNPD +T+ +++ A S +G + + E F M K I P+ Y+ + R +
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 404 PEKAEELLMTM 414
+A + M
Sbjct: 641 LTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434
PD Y+ L GY ++ + E+A +L M + G PNV ++ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362
P++V +N LI G+ + + ++ MK+ + P+V TYS +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 5e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 242 SGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275
G+KPDVVTYNT+ + G D+A E++ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 9e-07
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 277 NGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310
G++P+ T +I G C+ G++ EA+ M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL 117
V + L++ ++GK +EA +FN + + G KP++ TY+ L+ L
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457
V + T+I G C G ++ A+E+F +M E G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 171 SGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204
GL P TYNTLI G AG+ +E+V+LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248
TYN L+ C + EA + +M G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 178 STYNTLIKGYGIAGKPEESVKLLDLMSREG 207
TYN+LI GY AGK EE+++L M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317
T +I G CK G+++EAL + MKE G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454
V + ++ISG+C G ++ A+E+F +M E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN 212
TYNTLI G AG+ EE+++L M G ++P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERG-IEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388
+TY+T+++ AG +++ E+F +M + GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 145 FNAVINAFSESGNMEEAMDTFWKMKESGL 173
+N++I+ + ++G +EEA++ F +MKE G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281
+ TYN + A A+ G+ D A V+ EM+ +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 208 NVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239
+KP++ TYN L+ C + EA ++ +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN 282
VTYNT+ + G ++A E+ EM+ G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV 423
Y+ L G + E+A EL M E G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 458 LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491
L+T+ L+ ++A P A +L+ MKA G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279
VTYN++ + Y + G+ ++A E+ EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTP 175
+NA++ A +++G+ + A+ +MK SGL P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456
+ + ++ G D A+ V ++M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTT 177
+N +I+ ++G +EEA++ F +MKE G+ P
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 285 TCGIIISGYCKEGKIKEALRFARTMKEYGV 314
T +ISGYCK GK++EAL + MKE GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384
+TY+++++ + AG +++ E+F +M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386
+ TY+ ++ A + AG D + ++M +G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246
L TYN L+ A + A V+ +M ASG+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 637 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.39 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.71 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.58 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.26 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.19 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.02 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.92 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.9 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.43 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.01 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.96 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.8 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.73 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.65 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.58 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.54 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.28 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.0 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.95 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.93 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.68 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.05 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.77 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.32 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.24 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.12 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.43 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.62 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.38 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.26 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.24 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.97 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.46 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.17 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.51 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.28 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.88 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.99 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.98 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.95 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.84 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.39 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.86 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.18 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.16 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.95 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.9 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.23 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.03 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.47 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.36 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.06 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.35 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=691.96 Aligned_cols=527 Identities=17% Similarity=0.238 Sum_probs=502.6
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
+..+++.++|.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|..+|++|.+.|+.||..+|+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 445788899999999999999999999999996 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996 37899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006632 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006632 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+
T Consensus 448 ~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9997 57889999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
|..++++|+++|+++|++++|.++|+++ .||..+|++||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc---------ccccccccchH
Q 006632 467 GYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT---------NEMEAEEDIPV 536 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---------~~~~~~~~~a~ 536 (637)
+|.+.|++++|.++|+.|. ++|+.|+..||.+++++|+++|++++|.+++++|+..... ...+++.++|+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999999998 7999999999999999999999999999999999633111 13478999999
Q ss_pred HHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceecccc
Q 006632 537 ESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQ 616 (637)
Q Consensus 537 ~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~~~~~~~~~~~~~~~~~~~ 616 (637)
.+++++++++|++.++ |+.|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|. |+.+|+
T Consensus 678 ~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~----------f~~~d~ 745 (857)
T PLN03077 678 LAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA----------FLTDDE 745 (857)
T ss_pred HHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE----------EecCCC
Confidence 9999999999998774 7889999999999999999999999999999999999999999999 677889
Q ss_pred CCcccccc
Q 006632 617 PLGQVGMY 624 (637)
Q Consensus 617 ~~~~~~~~ 624 (637)
+||+.+..
T Consensus 746 ~h~~~~~i 753 (857)
T PLN03077 746 SHPQIKEI 753 (857)
T ss_pred CCcchHHH
Confidence 99988643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=613.22 Aligned_cols=503 Identities=20% Similarity=0.302 Sum_probs=419.3
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455678888888888888888888888887653 5678888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+.+|++.|+++.|.++|++|.+ ||.++|+++|.+|++.|++++|+++|++|.+.| +.||..+|+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCc
Confidence 8888888888888888888864 688888888888888888888888888888776 67888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888753 5778888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006632 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 888888888888888888888888888888888888888888888888888888888888888888888875 3677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-HGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~ 467 (637)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888875 5788888888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhc
Q 006632 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~ 547 (637)
|++.|++++|.+++++| ++.|+..+|..++.+|...|+++.|+.+++++ ++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l-----------------------~~~~p 525 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL-----------------------YGMGP 525 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------------------hCCCC
Confidence 88888888888887654 57788888888888888888777777666554 44567
Q ss_pred cCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceeccccCCccccc
Q 006632 548 TTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGM 623 (637)
Q Consensus 548 ~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (637)
++.. .|+.|+|+|++.|+|++|.++++.|+++|++|.|||||||+++++|. |+.++++||+.+.
T Consensus 526 ~~~~--~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~----------f~~~d~~h~~~~~ 589 (697)
T PLN03081 526 EKLN--NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS----------FFSGDRLHPQSRE 589 (697)
T ss_pred CCCc--chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE----------EccCCCCCccHHH
Confidence 6543 35889999999999999999999999999999999999999999999 6677799998643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=551.19 Aligned_cols=510 Identities=20% Similarity=0.297 Sum_probs=455.1
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...++...|..+++.+++.|++++|+++|++|...|+ .++..+++.++.+|.+.|..++|..+++.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3446788899999999999999999999999999886 46788888999999999999999999998863 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006632 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 146 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.| +.||..+|+.||.+|++
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 78999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006632 226 EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH--NGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|++++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 678999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
+.||..+|++|+.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHh
Q 006632 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRA----T-------------------GLTKEAKRILSKIK 520 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~eA~~~~~~~~ 520 (637)
++.+|.+.|++++|.++|++|.+.|+.||..+|.+++++|.+ + +..++|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877542 1 23579999999998
Q ss_pred hhhc--cc----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCC-chhhhhhhhccccccCc
Q 006632 521 NKER--TN----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKG-SAAALKKGRMLLRDADS 585 (637)
Q Consensus 521 ~~~~--~~----------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~-~~a~~~r~~~~~~~~~k 585 (637)
.... +. ...+..+.+....+.+. ..|....|.+|..|-+.+ |++ ++|..+.+.|..+|+.-
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 6532 10 01122233323333221 233333332334343333 445 48999999999999854
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=535.45 Aligned_cols=446 Identities=20% Similarity=0.326 Sum_probs=335.9
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
++...++.++..|.+.|..++|+.+|+.|. .||..+|+.++.+|++.|+++.|..+|++|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455556666777777777777777777775 2777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+ +.||..+|+.|+.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCH
Confidence 7777777777777777777777777777777777777777777777777777777665 677777777777777777777
Q ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006632 230 TEAWNVMHKMAA--SGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 230 ~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
++|.++|++|.. .|+.||..+|++|+.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777765 466777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006632 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777655
Q ss_pred HHh----c-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 468 YSE----A-------------------RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 468 ~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|.+ . +..++|..+|++|.+.|+.||..+|..++..++..+..+.+..+++.|.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 432 1 1235677777777777777777777777766667777777777776664
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-62 Score=541.54 Aligned_cols=441 Identities=20% Similarity=0.283 Sum_probs=353.8
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
.+.+++++||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...+++..+.+++..+.+.|+.||..+++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 34577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.|+.+|+++|++++|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|...| +.||..||+.++.+|++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELL 301 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhc
Confidence 888888888888888888888864 577888888888888888888888888888776 778888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006632 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888875 367788888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006632 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++|.+.|+.||..+|+.++.+|++.|+.+.+.++++.+.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 453 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----K 453 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----C
Confidence 888888888888888888888888888888888888888888888888888888888888888888888887753 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV------------ 454 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------ 454 (637)
|..+|++++.+|++.|+.++|..+|++|.. ++.||..||++++.+|++.|+.+.+.+++..+.+.|+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 667777777777777777777777777765 3677777776666555554444444444444443333
Q ss_pred ------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 455 ------------------SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 455 ------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|..++.+|.+.|++++|.++|
T Consensus 533 ~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 35677777777777778888888888888877778888888888888888888888888888
Q ss_pred HHHhh
Q 006632 517 SKIKN 521 (637)
Q Consensus 517 ~~~~~ 521 (637)
++|..
T Consensus 613 ~~M~~ 617 (857)
T PLN03077 613 HSMEE 617 (857)
T ss_pred HHHHH
Confidence 87763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=508.63 Aligned_cols=440 Identities=18% Similarity=0.269 Sum_probs=416.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG-MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
.++..+|+.+|..+.+.|++++|..+|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006632 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999963 7999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006632 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|. .+|..+|++++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 6799999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006632 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
.|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 589
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQKSTFLLLAE 501 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~ 501 (637)
..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ +|+.|+..+|.++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974 799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcccc
Q 006632 502 ARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLR 581 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~ 581 (637)
+|+++|++++|.+++++|+. .|+...| ..|.+.+...|+.+.|.++-+.+.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~------------------------~p~~~~~---~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPF------------------------KPTVNMW---AALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCC------------------------CCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999999999988742 2443333 55667888999999999888777654
Q ss_pred cc
Q 006632 582 DA 583 (637)
Q Consensus 582 ~~ 583 (637)
+.
T Consensus 524 ~p 525 (697)
T PLN03081 524 GP 525 (697)
T ss_pred CC
Confidence 43
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=296.11 Aligned_cols=497 Identities=12% Similarity=0.045 Sum_probs=368.7
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +........++.
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHH
Confidence 34445555555666666666666666655432 2244455555555556666666666666655543 223344445556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+.+.|++++|..+++.+.... +.+..+|..+...|...|++++|.+.|+++.+.. +.+...+..++..+...|+++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666543 3356677777777778888888888887777653 455667777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..|.+.|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888877654 34667777788888888888888888888766543 455667778888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006632 311 EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..+
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 654 5567788888888888888888888888887764 3466777888888888899999999888887764 446788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..++..+...|++++|..+++.+.+.. +++...+..++..+...|++++|...|+++...+ |+..++..++.++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 8888888888999999999998888775 6677888888888999999999999999988854 555777888889999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHH
Q 006632 471 ARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESL 539 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~ 539 (637)
.|++++|.+.++++.+.. ..+...+..++.++...|++++|...++++....|.+ ...++ +.|...+
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999998887632 2356678888899999999999999999998775542 12344 5588889
Q ss_pred HHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccC
Q 006632 540 ERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDAD 584 (637)
Q Consensus 540 e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~ 584 (637)
++++++.|++.. .+..++.+|...|++++|....+++.+.+..
T Consensus 827 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 827 EKALKLAPNIPA--ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhhCCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999988888765 3467899999999999999999888877764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=293.76 Aligned_cols=494 Identities=13% Similarity=0.094 Sum_probs=428.4
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+...+..+...+...|++++|+..|+.+..... ........++..+.+.|++++|..+++.+.... +.+..++..+
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 471 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLL 471 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence 34567788889999999999999999999987542 244566677888999999999999999998764 6778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...|...|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999887543 67788889999999999999999999998864 5678899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..++.+|.+.|++++|+..|++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998764 4567788889999999999999999999998754 35778899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006632 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 98764 5577788999999999999999999999998865 3468889999999999999999999999998875 5678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..++..+.+.|++++|...|+++... .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88899999999999999999999999986 4555788889999999999999999999999864 34777899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHH
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVE 537 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~ 537 (637)
...|+.++|...|+++.+.. .++...+..++.++...|+ ++|+.+++++....+.+ ...++.+.|..
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998743 2356688999999999999 88999999997765542 13577788999
Q ss_pred HHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcc
Q 006632 538 SLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRML 579 (637)
Q Consensus 538 ~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~ 579 (637)
.++++++..|.+.. .+..++.+|...|++++|..+-+.|.
T Consensus 859 ~~~~a~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAA--IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999998887654 46789999999999999998887764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-22 Score=231.49 Aligned_cols=371 Identities=11% Similarity=0.034 Sum_probs=229.8
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTY----------------TTLLAALTIQKRFNSIHSIMSQ 132 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~ 132 (637)
+.++..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+...+...|++++|...|++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456667778888888899999999998888753 2233322 2234467778889999998888
Q ss_pred HHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--
Q 006632 133 VEENGMDPDSIFF-NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-- 209 (637)
Q Consensus 133 ~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 209 (637)
+.+.+ +|+...- ..+.......|+.++|++.++++.+..+. +...+..+...+...|+.++|++.++++......
T Consensus 138 ~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88654 4443221 11122223458888899999888887543 6677888888888888888888888887543100
Q ss_pred -------------CCC---HHHH----------------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 006632 210 -------------KPN---LRTY----------------------------------NVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 210 -------------~~~---~~~~----------------------------------~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
+++ ...+ ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 0000 01134456678888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHH
Q 006632 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTC------------GIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 240 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~ 306 (637)
++.. +.+...+..|..++.+.|++++|+..|++..+...... ...| ......+.+.|++++|+..|
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7753 33677788888888888888888888888876543211 1111 12244567788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH------------------------
Q 006632 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA------------------------ 362 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------ 362 (637)
+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+ .+...+..+...
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 8887764 44566777778888888888888888888776542 233333333333
Q ss_pred ------------------HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006632 363 ------------------WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424 (637)
Q Consensus 363 ------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 424 (637)
+...|++++|+..+++.++.. +.+...+..+...|.+.|++++|...++++.+.. +.+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 334555555555555555542 2234455555555566666666666666555432 22333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
.+..+...+...|+.++|+..++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 33333333333444444444433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-22 Score=228.61 Aligned_cols=488 Identities=12% Similarity=0.057 Sum_probs=350.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
..+...+.+.|++++|++.|+.+.+.+ +|+.. ............|+.++|+..++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 444567788899999999999988643 33432 11111222234588889999999988875 5677788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCC------------------C--------------CCHHHH---------------------H
Q 006632 155 SGNMEEAMDTFWKMKESGL------------------T--------------PTTSTY---------------------N 181 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~---------------------~ 181 (637)
.|+.++|+..++++.+... . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8999999888888754311 0 000000 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH---------
Q 006632 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTY--------- 251 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~--------- 251 (637)
.....+...|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11344567789999999999988764 5578888899999999999999999999988754221 11112
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 006632 252 ---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL----- 323 (637)
Q Consensus 252 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 323 (637)
..+...+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1224466788999999999999887643 356677778889999999999999999887653 223333322
Q ss_pred -------------------------------------HHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006632 324 -------------------------------------LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 324 -------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (637)
+...+...|++++|.+.+++..+..+ .+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 22334567899999999999988763 3667788899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcC
Q 006632 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---------IFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g 437 (637)
|++++|...++++.+.. +.+...+..+...+.+.++.++|+..++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999998754 3456666666667788999999999998865432222221 1234566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.++|+.+++. .+++...+..+...+...|+.++|+..|++..+ ..|+ ...+..++.++...|++++|++.+
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999998872 234566777888899999999999999999877 3454 567888899999999999999999
Q ss_pred HHHhhhhccc-----------cccccccchHHHHHHHHhhhccCCC----CCCcccccccccccCCCchhhhhhhhc
Q 006632 517 SKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTAS----YPNLLQIPNVVSSDQKGSAAALKKGRM 578 (637)
Q Consensus 517 ~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~~~----y~~~~~L~~~y~~~g~~~~a~~~r~~~ 578 (637)
++++...+.. ...++.+.|...++++++..|++.. ...+..++.+|...|++++|....+..
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9887664432 1356677888888888876554322 012334688999999999998876544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=195.47 Aligned_cols=432 Identities=15% Similarity=0.114 Sum_probs=295.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
...|.....+.|++.+|.+.-...-..+ +.+......+-..+.+..+++....--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4557788889999999998766554432 1222222222334444445544433333333322 4456677777888878
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 006632 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 233 (637)
.|++++|+.+++.+.+..+. ....|..+..++...|+.+.|.+.|.+..+.. |+... .+.+....-..|++.+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhH
Confidence 88888888888888776543 56677778888888888888888877777643 55433 333444555577788887
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 234 NVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 234 ~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
..+.+.++. .|. .+.|+.|...+-..|+...|++.|++.++. +|+ ...|..|...|...+.+++|+..|.+...
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 777777664 233 456777777777788888888888777764 333 45677777778778888888887777765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
.. +...+.+..+...|-..|+.+.|+..+++.++..+ .-...|+.|..++-..|++.+|.+.+.+.+... +....+.
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 52 23445666677777777888888888887777542 235677778888888888888888888777653 3346677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 006632 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSE 470 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~ 470 (637)
+.|...|...|.+++|..+|....+-. +.-....+.|...|-++|++++|+..|++.+. +.|+.. .|+.+...|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 778888888888888888887777642 22345677777788888888888888887776 566654 67777788888
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 471 ARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.|+.+.|++.+.+... +.|. .+..+.+..++..+|++.+|+.-++.+....|
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 8888888888777766 5566 34677777788888888888877777765544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=192.06 Aligned_cols=444 Identities=10% Similarity=0.066 Sum_probs=359.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
...|..-..+.|++.+|.+.-...-..+ +.+....-.+-..+.+..+.+.....-....+... .-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHH
Confidence 4455666678899999987655444432 33333444444566666677666554444444332 357789999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 268 (637)
.|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+.++. .|+..... .+....-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999864 456889999999999999999999999999875 56554433 4555566789999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006632 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..|.+.++... -=..+|+.|...+-..|+...|++.|++..+.. +--...|-.+...|...+.++.|...+.......
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99998887632 235789999999999999999999999998763 2235688999999999999999999999887765
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
+.....+..+...|-..|.++.|+..+++.++.. +.-...|+.|..++-..|+..+|...+++..... +....+.+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2356778888888999999999999999999864 2347899999999999999999999999999873 455678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 006632 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRAT 506 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 506 (637)
|...|...|.+++|..+|+...+ +.|... .++.|...|-+.|+.++|+..+++... +.|+. ..|..+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999998 456644 799999999999999999999999887 89985 4899999999999
Q ss_pred CCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006632 507 GLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 507 g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
|+.++|...+.++...+|.- ..-|+...|...++.++.+.||... ++.+|....--...|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHHHHHhcccc
Confidence 99999999999998665531 2357889999999999999998765 45777766666677776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-19 Score=188.79 Aligned_cols=431 Identities=12% Similarity=0.014 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
.+......+.+.|++++|+..|++.+. ..|+...|..+..+|...|++++|+..+.+.++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455678889999999999999999987 46788889999999999999999999999999875 556788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..|++++|+..|......+...+.. ...++..+.. ..+........... +++...+..+...+ .........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGNYL-QSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHHHH-HHccCCcch
Confidence 9999999999887776543222222 2222221111 12222222222221 22222333222222 111111111
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006632 234 NVMHKMAASGMKPD-VVTYNTIATA---YAQNGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 234 ~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
.-+....+. .+. ...+..+... ....+.+++|.+.|++....+ .+.....+..+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111111 111 0111111111 123467889999998888754 12345667788888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006632 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+.+... +.....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|+..|++.++.. +.+
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 988763 3346678888888888999999999999887765 3467788888888999999999999999988764 346
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-----K-TF 461 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~ 461 (637)
...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|+..|++..+.....+. . .+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 7778888888899999999999999888763 556788888899999999999999999998875322111 1 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...+..+...|++++|..++++..+ +.|+.. .+..++.++.+.|++++|.++++++....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2222233446899999999988776 345544 67788899999999999999999886553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=196.51 Aligned_cols=311 Identities=14% Similarity=0.130 Sum_probs=185.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCC
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~ 228 (637)
.+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+.......+ ...++..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666665422 444566666666666666666666666655321111 12345566666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 304 (637)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 234556666666666666666666666666554322211 123445556666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006632 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
.|+++.+.. +.+...+..+...+.+.|++++|.+.++.+.+.++.....++..++.+|...|++++|...++.+.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 777666543 23344555566666666666666666666655432222345566667777777777777777776664
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS---DGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 344455566777777777777777777776664 4666666666665553 446777777777777655555554
Q ss_pred HHHHHHHHhcCCh
Q 006632 462 ETLMWGYSEARQP 474 (637)
Q Consensus 462 ~~l~~~~~~~g~~ 474 (637)
.+|.+.|..
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 335555543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-19 Score=193.04 Aligned_cols=222 Identities=12% Similarity=-0.005 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...|..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45566666666655 7777888877777665 355444444455556889999999999887654 455566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 511 (637)
++.+.|+.++|...+++..+... ++...+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 88889999999999998887542 2333344444455566999999999988876 56777788888889999999999
Q ss_pred HHHHHHHHhhhhccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccc
Q 006632 512 AKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 512 A~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
|+..++++....|.+ ...++.+.|...+++++++.|++.. ++.+|+.+|...|++++|....++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~--a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA--LIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988877653 1246678888888899888888765 467889999999999988877766655
Q ss_pred ccc
Q 006632 581 RDA 583 (637)
Q Consensus 581 ~~~ 583 (637)
...
T Consensus 706 l~P 708 (987)
T PRK09782 706 DID 708 (987)
T ss_pred cCC
Confidence 444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-19 Score=189.01 Aligned_cols=424 Identities=13% Similarity=0.016 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+......+...|+++.|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3455667788889999999999998875 567888888889999999999999999998887543 5678888899999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006632 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|++++|+..|......+. .+......++..+.. ..+........+.. +++...+..+.. |..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999988877665431 122222222222211 12222233333221 222223332322 22222222222
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006632 269 EVIVEMEHNGVQPN-GRTCGIIISGY---CKEGKIKEALRFARTMKEYG-V-HPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.-+....+. .+. ...+..+...+ ...+++++|++.|+...+.+ . +.....+..+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222211111 111 11111111111 23478999999999998764 2 3345678888888999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006632 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
...+..+ .....|..+...+...|++++|...|+.+++.. +.+..++..+...|...|++++|...|++..+.. +.+
T Consensus 356 kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 9988652 356788889999999999999999999998864 4568899999999999999999999999999874 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HH
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS------TF 496 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~ 496 (637)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.....+.. .+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 7888899999999999999999999998753 2357789999999999999999999999987632211111 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHHHHhhhccC
Q 006632 497 LLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~ 549 (637)
......+...|++++|..+++++....|.. ...++.+.|...+++++++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 222334455799999999999987665542 23567788888889988876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=189.99 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=176.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 006632 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQ 260 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~ 260 (637)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334567788888888888888764 44566778888888888888888888888776432211 2456677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhh
Q 006632 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL----VIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 336 (637)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888887776643 245667777777777777887787777777664322211 123344445555566666
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666665555433 1233444455555555555555555555555432111133445555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCH
Q 006632 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3 234444455555555555555555555555543 3555555554444332 33555555555555544444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-18 Score=184.07 Aligned_cols=327 Identities=9% Similarity=0.027 Sum_probs=145.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006632 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
+..+.+.|+++.|..+++..+... +.+...+..++..+...|++++|...|+++.+..+. +...+..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 334444444444444444444432 222333333334444444555555555544444322 334444444444445555
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
++|+..+++..... |.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 127 ~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 55555554444432 233444444444455555555555544444333211 11122111 124444555555555544
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh----HHHHHHHHhhCCC
Q 006632 274 MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG----VDEVLALMKEFRV 349 (637)
Q Consensus 274 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~ 349 (637)
+.+....++......+...+.+.|++++|+..++++.... +.+...+..+...+...|++++ |...++...+..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 4433222222222333344445555555555555544432 2334444444455555555443 4445555444332
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 006632 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTT 428 (637)
Q Consensus 350 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ 428 (637)
.+...+..+...+...|++++|...+++..... +.+..++..+...|.+.|++++|...|+++.+. .|+. ..+..
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 234445555555555555555555555555432 223444444555555555555555555555443 2222 22222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006632 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..++...|+.++|+..|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-18 Score=183.76 Aligned_cols=353 Identities=9% Similarity=0.057 Sum_probs=288.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
-.++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++++.+.. |.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345778889999999999999998853 3456667777788888999999999999999875 66788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
|++++|...|++..+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999987433 67788999999999999999999999887654 3444445444 347889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 006632 236 MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE----ALRFARTMKE 311 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~ 311 (637)
++.+.+....++...+..+...+...|++++|...++++..... .+...+..+...|...|++++ |+..|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 99988764334555556667888999999999999999988753 467788889999999999986 8999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHH
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHA 390 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 390 (637)
.. +.+...+..+...+...|++++|...++...+..+ .+...+..+..++.+.|++++|...++.+.... |+ ...
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 64 55677899999999999999999999999988753 356778888999999999999999999998764 44 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
+..+..++...|+.++|...|++..+. .|+.. ...+++|...+.+..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHHHHHHHHHHHHHh
Confidence 555677889999999999999999876 34432 23455666666666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-18 Score=184.54 Aligned_cols=403 Identities=10% Similarity=0.068 Sum_probs=228.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+.....-.+......|+.++|++++.+.... .+.+...+..+..++...|++++|..++++.++.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444444566667788888888888887752 13455567777788888888888888888877764 555667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChH
Confidence 888888888888888888776432 455 7777778888888888888888887764 445666667777777788888
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCChh-hH----HHHH
Q 006632 231 EAWNVMHKMAASGMKPDV------VTYNTIATAYA-----QNGEA---DQAEEVIVEMEHN-GVQPNGR-TC----GIII 290 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~li 290 (637)
+|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 88887776553 2221 01111222221 11122 4555555555532 1112111 11 0112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHc
Q 006632 291 SGYCKEGKIKEALRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP---DVITYSTIMNAWSTA 366 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 366 (637)
..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2334556666666666666554311 111 11113445556666666666666654432111 123334444455566
Q ss_pred CChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 367 GFMDKCKEIFDDMGKAGI-----------KPD---AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
|++++|..+++.+..... .|+ ...+..++..+...|++++|+++++++.... |.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 666666666666554421 011 1233444455555566666666665555442 4445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 433 WCSDGSMDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|++++|++.++++.+.. |+ ...+..++..+...|++++|..+++.+.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555566666666665555532 33 33444444455555556666655555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-18 Score=185.50 Aligned_cols=412 Identities=10% Similarity=-0.010 Sum_probs=314.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+.++....-.+......|+.++|+.++.+..... +.+...+..+...+...|++++|..+|++..+..+. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3455555666777888999999999999998643 566778999999999999999999999999887433 57778899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006632 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
+..+...|++++|+..+++..... |.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999998874 55677 9999999999999999999999999874 3356666778888889999
Q ss_pred HHHHHHHHHHHHhCC---CCCChhhHHHHHHHH-----HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHH
Q 006632 264 ADQAEEVIVEMEHNG---VQPNGRTCGIIISGY-----CKEGKI---KEALRFARTMKEY-GVHPNLV-IF----NLLIK 326 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ll~ 326 (637)
.+.|+..++...... ..........++..+ ...+++ ++|+..++.+.+. ...|+.. .+ ...+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 999999988655410 000111222222222 233344 7889999988754 1122221 11 11134
Q ss_pred HHHHcCCHhhHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 006632 327 GFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP---DAHAYSILAKGYVREQ 402 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 402 (637)
++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+....... .......|..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999887532 322 22335778999999999999999988653211 1355677777889999
Q ss_pred CHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 403 EPEKAEELLMTMIESGF-----------HPN---VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
++++|..+++++..... .|+ ...+..+...+...|+.++|+++++++....+ -+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 99999999999987521 123 23566778889999999999999999988643 3567889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|++.+++... +.|+ ...+...+..+.+.|++++|+.+++++....|.
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999887 5577 446667777899999999999999999887664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-18 Score=185.08 Aligned_cols=469 Identities=8% Similarity=0.017 Sum_probs=270.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 006632 82 LIERGKPQEAQAIFNNLIEGGHKPSLVTYTTL-LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE-SGNME 159 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~ 159 (637)
|.+.+...++++ .......|++.+.... ...|...|++++|+.++.++.+.+ +.+......|..+|.. .++ +
T Consensus 160 y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~ 233 (987)
T PRK09782 160 LAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-D 233 (987)
T ss_pred hhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-H
Confidence 555544444443 2222234444444444 788888888888888888888876 5556666677777777 366 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH-----------------------
Q 006632 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY----------------------- 216 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------------------- 216 (637)
.+..++... ++.+...+..++..|.+.|+.++|.+++.++.....-.|...+|
T Consensus 234 ~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~ 309 (987)
T PRK09782 234 RLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFA 309 (987)
T ss_pred HHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhH
Confidence 777775532 22477788888888888888888888888775432111222222
Q ss_pred -------HHHHHHHHhcCCHHHHHHHH-----------------------------HHHHHCCCCCCHHHHHHHHHHHHH
Q 006632 217 -------NVLVRAWCNEKNITEAWNVM-----------------------------HKMAASGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 217 -------~~li~~~~~~g~~~~A~~~~-----------------------------~~~~~~g~~~~~~~~~~li~~~~~ 260 (637)
..++..+.+.++++.+.++. ..|.+.. +-+......+.-...+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 310 DNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 11233444455554444332 1111110 1122223333334456
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHC-
Q 006632 261 NGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGK---IKEALRF----------------------ARTMKEY- 312 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~- 312 (637)
.|+.++|.++|....... ...+......++..|.+.+. ..++..+ +......
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 677777777777765420 11223334456666666554 2222222 1111110
Q ss_pred CC-CC--CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006632 313 GV-HP--NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 313 ~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
+. ++ +...|..+..++.. ++.++|...+....... |+......+..++...|++++|...|+++... +|+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 11 23 45566666665555 66666777666655543 34333333444445777777777777776543 34444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.+..+...+.+.|++++|...+++..+.. +++...+..+.......|++++|+..+++..+. .|+...+..+..++.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 55566666777777777777777776653 333333333333444557777777777777763 356667777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHH
Q 006632 470 EARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVE 537 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~ 537 (637)
+.|+.++|+..+++... ..|+ ...+..+..++...|+.++|+..++++....|.+ ...++.+.|+.
T Consensus 621 ~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777777765 4454 3355666667777777777777777776665542 23456667777
Q ss_pred HHHHHHhhhccCCCCCCcccccccccccCCCchhhh
Q 006632 538 SLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAAL 573 (637)
Q Consensus 538 ~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~ 573 (637)
.++++++++|+++. .....+++.....+++.+.+
T Consensus 699 ~l~~Al~l~P~~a~--i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 699 YARLVIDDIDNQAL--ITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHhcCCCCch--hhhhhhHHHHHHHHHHHHHH
Confidence 77777777776654 34556666666666665555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-16 Score=172.06 Aligned_cols=434 Identities=10% Similarity=0.030 Sum_probs=325.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSL--VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
+-...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++..... +........+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 44556899999999999999975 4442 344 88888889999999999999988321 333444555567888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006632 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++|+++|+++.+..+. +...+..++..|...++.++|++.++++.... |+...+..++..+...++..+|++.+
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999998755 57788888999999999999999999998764 66666655555555567776799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH------HHHHHHH---H--hcCC---HHHH
Q 006632 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC------GIIISGY---C--KEGK---IKEA 302 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g~---~~~A 302 (637)
+++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ ..++..- . ...+ .+.|
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999874 446777788899999999999998776653211 11111000 0111100 0 1122 3456
Q ss_pred HHHHHHHHHC-C-CCCCHH----HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006632 303 LRFARTMKEY-G-VHPNLV----IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 303 ~~~~~~~~~~-~-~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 376 (637)
+.-++.+... + .++... ...-.+-++...+++.++++.++.+...+.+....+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666666542 1 122222 223345677889999999999999998887666778889999999999999999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcC
Q 006632 377 DDMGKAG-----IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-------------HPNVV-IFTTIISGWCSDG 437 (637)
Q Consensus 377 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g 437 (637)
+.+.... .+++......|..+|...+++++|..+++++.+... .||-. ....++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9987643 123444467899999999999999999999987311 12222 2344567788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 006632 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+..+|++.++++....+ -|......+...+...|.+.+|.+.++.... +.|+. ......+.++...|++++|..++
T Consensus 431 dl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999987653 3888999999999999999999999977765 46664 46668888889999999999999
Q ss_pred HHHhhhhcc
Q 006632 517 SKIKNKERT 525 (637)
Q Consensus 517 ~~~~~~~~~ 525 (637)
+++....|.
T Consensus 508 ~~l~~~~Pe 516 (822)
T PRK14574 508 DDVISRSPE 516 (822)
T ss_pred HHHHhhCCC
Confidence 999877765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-17 Score=168.19 Aligned_cols=447 Identities=14% Similarity=0.093 Sum_probs=345.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HH
Q 006632 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD--SI 143 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 143 (637)
...+++..+.|.+.|.-.|++..+..+...+...... .-..+|..+.+++-..|++++|...|.+..+.. +| +.
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccc
Confidence 4457788888999999999999999999988764311 123468888999999999999999998888764 33 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 006632 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLDLMSREGNVKPNLRTYNVL 219 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~l 219 (637)
.+--|..+|.+.|+++.+...|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~l 420 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLEL 420 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHH
Confidence 5566789999999999999999999886432 5667777777887765 5677888888877753 6788889888
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCh------hhH
Q 006632 220 VRAWCNEKNITEAWNVMHKMA----ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GVQPNG------RTC 286 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~ 286 (637)
...+-...-+.. +..|..+. ..+..+.+...|.+...+...|+++.|...|...... ...+|. .+-
T Consensus 421 aql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 888766554444 66665543 4555678889999999999999999999999887654 112222 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006632 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
..+...+-..++++.|.+.|..+.+. .|+-+ .|--++......+...+|...++...... ..++..++.+...+..
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHh
Confidence 45666777788999999999999876 34433 44444433445577788888888887754 4566777778778888
Q ss_pred cCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 366 AGFMDKCKEIFDDMGKAG-IKPDAHAYSILAKGYVR------------EQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
...+..|.+-|..+.+.- ..+|+.+..+|.+.|.+ .+..++|+++|.++++.. |.|...-|-+.-.
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhh
Confidence 888888888777665532 23677888788876643 345788999999999875 7788888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 433 WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~e 511 (637)
++..|++.+|..+|.+..+... -+..+|..+..+|...|++..|++.|+... +..-.-+.....+|..++.+.|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999998753 256689999999999999999999998864 55556678889999999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 006632 512 AKRILSKIKNKERT 525 (637)
Q Consensus 512 A~~~~~~~~~~~~~ 525 (637)
|.+.+..+....|+
T Consensus 735 ak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 735 AKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999998766665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-15 Score=161.39 Aligned_cols=425 Identities=12% Similarity=0.079 Sum_probs=308.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 115 AALTIQKRFNSIHSIMSQVEENGMDPDS--IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
-...+.|+++.|+..|+++++.. |+. .++ .++..+...|+.++|+.++++..... +........+...|...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 34568999999999999999864 443 344 88888999999999999999998321 1233444445678889999
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
+++|+++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 118 yd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 118 WDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999875 566788888899999999999999999999876 5566666555555555677767999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHH---------HcCCHhhH---H
Q 006632 273 EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIF--NLLIKGFV---------EIMDRDGV---D 338 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~---------~~~~~~~a---~ 338 (637)
++.+..+ .+...+..+.....+.|-...|.++..+-... +.+....+ ...+.-.+ ...++..+ .
T Consensus 194 kll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9998753 46777888899999999999998777654321 11111111 00000011 11223333 3
Q ss_pred HHHHHHhh-CCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 339 EVLALMKE-FRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412 (637)
Q Consensus 339 ~~~~~~~~-~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (637)
.-++.+.. .+..|.. .+..-.+-++...|+..++++.|+.+...+.+....+-.++.++|...+++++|+.+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 33444433 1222321 12234455778899999999999999988866667788999999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHHhcCC
Q 006632 413 TMIESG-----FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-----------SP--NLK-TFETLMWGYSEARQ 473 (637)
Q Consensus 413 ~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~~-~~~~l~~~~~~~g~ 473 (637)
.+.... .+++......|.-+|...+++++|..+++++.+.-+ .| |-. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 997642 123444467889999999999999999999987321 13 333 34455777889999
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHH
Q 006632 474 PWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLER 541 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~ 541 (637)
..+|++.++++.. ..| +......+.+++...|+..+|+..++.+....|.+ ...++.+.|.....+
T Consensus 432 l~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 432 LPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999976 344 56688899999999999999999997776665542 123455666666777
Q ss_pred HHhhhccCCC
Q 006632 542 LYHKEATTAS 551 (637)
Q Consensus 542 ~~~~~~~~~~ 551 (637)
+++..|++..
T Consensus 510 l~~~~Pe~~~ 519 (822)
T PRK14574 510 VISRSPEDIP 519 (822)
T ss_pred HHhhCCCchh
Confidence 7777777765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-15 Score=153.15 Aligned_cols=440 Identities=12% Similarity=0.087 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
.+|-.+.++|-..|++++|...|.+.......-.+..+..+...+...|+++.+...|+.+.+.. +.+..+...|...|
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 34667888999999999999999988865322124445567789999999999999999999875 66677888888888
Q ss_pred HhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHH
Q 006632 153 SESG----NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS----REGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 153 ~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~~li~~~~ 224 (637)
+..+ ..+.|..+..+..+..+ .|...|..+...+... ++..++..|.... ..+ -++-.+..|.+...+.
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHF 463 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHH
Confidence 8775 56777788887777653 4788898888888654 4444466665443 333 2366789999999999
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006632 225 NEKNITEAWNVMHKMAAS---GMKPDV------VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
..|++.+|...|...... ...+|. .+-..+..+....++.+.|.+.|..+.+..+ .-+..|..++.+.-.
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHh
Confidence 999999999999998765 223333 2334477888888999999999999988632 223444445444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH---------
Q 006632 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWST--------- 365 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------- 365 (637)
.+...+|...+....... ..++..+..+...+.....+.-|.+-|..+.+.. ..+|..+.-+|...|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 678889999999988664 5677778888878888888888888666654432 23577776677765543
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006632 366 ---AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 366 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
.+..++|+++|.++++.. +.|...-|-+.-.++..|++.+|..+|.++.+.. ..+..+|-.+..+|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 345788999999999875 5588888999999999999999999999999874 45667899999999999999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH------------------H
Q 006632 443 IEVFDKMCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK--STFLLLA------------------E 501 (637)
Q Consensus 443 ~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~------------------~ 501 (637)
+++|+...+. ...-+......|.+++...|.+.+|.+.+..... ..|.. ..|+..+ .
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ee 777 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEE 777 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHH
Confidence 9999988754 4455777899999999999999999998877655 33332 2222111 1
Q ss_pred HHHHcCCHHHHHHHHHHHhhh
Q 006632 502 ARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+....+.+++|.++|..+...
T Consensus 778 v~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 778 VLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 223345567788888887544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-13 Score=133.68 Aligned_cols=507 Identities=11% Similarity=0.051 Sum_probs=355.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
++++..|-.. +...+.+.|+-++.+..+. ++.+...|. ++++...++.|..++.++.+. ++.+..+|.+-
T Consensus 377 P~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 3455555433 4456677788888888774 333444444 445556678888888887765 57788888877
Q ss_pred HHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHH
Q 006632 149 INAFSESGNMEEAMDTFWK----MKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN-LRTYNVLVRAW 223 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~ 223 (637)
...=-.+|+.+...+++++ +...|+..+...|..=...|-..|..-.+..+......-|.-.-| ..||+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 7777778888887777765 345677778888888888888888888888887777765522222 46788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006632 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.+.++-|..+|...++. ++.+...|...+..--..|..+.-..+|++....- +.....|.....-+...|++..|+
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 8888888888888888765 34466777777766667788888888888887653 234556666677777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
.++....+.. +-+...|-.-+........++.|..+|.+....+ ++...|.--+..-.-.+..++|++++++.++.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 8888887764 3466788888888888888888888888877643 56666666666666678888888888887775
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
++.-...|..+.+.+-+.++.+.|.+.|..-.+. .|-.+..|-.+...--+.|.+-.|..++++..-.+++ |...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHH
Confidence 3444667888888888888888888888776654 2445567777777777888888888888888776644 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc--------cccccccch
Q 006632 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN--------EMEAEEDIP 535 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--------~~~~~~~~a 535 (637)
.+..=.+.|..+.|..+..+..+. ..-+...|..-+.+..+.++--.+...+++... .||- -.+...+.|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~-dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-DPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHH
Confidence 888888888888888877666541 222344677777777777776666555555421 1111 013445666
Q ss_pred HHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhh
Q 006632 536 VESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYL 599 (637)
Q Consensus 536 ~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~~ 599 (637)
+.=.++++..+|+++.. ...+...+...|.-++-..|.++-..... .-|..|+-|..-+-
T Consensus 837 r~Wf~Ravk~d~d~GD~--wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDA--WAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHccCCccchH--HHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhhhHH
Confidence 66678888888988763 33355566677876666666654433333 34778887765443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-13 Score=127.24 Aligned_cols=512 Identities=11% Similarity=0.051 Sum_probs=371.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+...|..-.+-=..+++++.|+.+|++.+..+ ..+...|..-+..-.+++....|..++++++..= |.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44455555555566888999999999999854 5578888888888899999999999999998752 434456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+=-..|++..|.++|++-.+. .|+...|++.|+.-.+.+.++.|..++++..- +.|++.+|--....--+.|+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHH
Confidence 777889999999999998875 68999999999999999999999999999987 5699999999999999999999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCH---HHHHH
Q 006632 231 EAWNVMHKMAAS-G-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKI---KEALR 304 (637)
Q Consensus 231 ~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~---~~A~~ 304 (637)
.|..+|....+. | -..+...+++...-=.++..++.|.-+|+-.++.-+... ...|......--+.|+. ++++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988753 1 011234555555555667889999999988876532211 33444444444445653 44432
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCH--HHHHH--------HHHHHHHcCCh
Q 006632 305 -----FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV--ITYST--------IMNAWSTAGFM 369 (637)
Q Consensus 305 -----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~--------l~~~~~~~g~~ 369 (637)
-++++.+.+ +.|-.+|--.+..-...|+.+...++|+..+..- +|-. ..|.. .+-.-....++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 244444443 6788899888888888999999999999998764 3321 11111 11112356889
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGY----VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
+.+.++|+..++. ++-..+|+.-+--+| .++.++..|.+++...+.. .|...+|...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998884 344555555544444 5789999999999998854 79999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 446 FDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH-PQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+++.++.++. |-.+|......=...|+.+.|..+|+-+.....- .....|...++--...|.++.|..+++++..+..
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999997643 6778888888888899999999999998754322 2233677888888899999999999999987765
Q ss_pred cc---------------cc-----------cccccchHHHHHHHHhh----hccCCCCCCcccccccccccCCCchhhhh
Q 006632 525 TN---------------EM-----------EAEEDIPVESLERLYHK----EATTASYPNLLQIPNVVSSDQKGSAAALK 574 (637)
Q Consensus 525 ~~---------------~~-----------~~~~~~a~~~~e~~~~~----~~~~~~y~~~~~L~~~y~~~g~~~~a~~~ 574 (637)
|. .. ..+...|+.+.+++... .|.......+-..-+.=...|.-.+...|
T Consensus 539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V 618 (677)
T KOG1915|consen 539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERV 618 (677)
T ss_pred cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 52 01 11445566666766542 23222211111222334456777788888
Q ss_pred hhhccccc-----cCcccchh-hhhcc
Q 006632 575 KGRMLLRD-----ADSSLECS-WFATT 595 (637)
Q Consensus 575 r~~~~~~~-----~~k~~g~s-wi~~~ 595 (637)
.+.|-++- +..+-|++ |-|.-
T Consensus 619 ~s~mPk~vKKrr~~~~edG~~~~EEy~ 645 (677)
T KOG1915|consen 619 QSKMPKKVKKRRKIQREDGDTEYEEYF 645 (677)
T ss_pred HHhccHHHHhhhhhhcccCchhHHHHH
Confidence 87774332 22256655 55543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-12 Score=122.50 Aligned_cols=425 Identities=15% Similarity=0.169 Sum_probs=225.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHH-HHHHHHHHHCCCCCCHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK--RFNSI-HSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+-|.|+. +..+|...++.-+|+.|...|++.+...-..|++..+-.+ +..-| .+.|-.|.+.| .....+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 444555554 4567899999999999999888877777666655433322 22211 12233333333 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+.|.+.+ -+|+...+ +..++..||.+.++.-..+.|.+++.+-.... .+.+..+||.+|.+-.-..
T Consensus 191 -----K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~- 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSV- 256 (625)
T ss_pred -----ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhc-
Confidence 2333322 23333222 44566666666666666666666666555433 3455666666655433221
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ----AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE-AL 303 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~ 303 (637)
..+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |.
T Consensus 257 ---~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 257 ---GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred ---cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 14556666666666666666666666666665543 33445556666666666666666666665555432 33
Q ss_pred HHHHHHHHC----CC----CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC----CCCC---HHHHHHHHHHHHHcCC
Q 006632 304 RFARTMKEY----GV----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR----VNPD---VITYSTIMNAWSTAGF 368 (637)
Q Consensus 304 ~~~~~~~~~----~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~ 368 (637)
.++.++... .+ +.|..-|...+..|.+..+.+.|.++...+.... +.|+ .+-|..+..+.++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 333333221 11 1233344555555555566555555554443211 1122 1234455555566666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 006632 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG----------- 437 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------- 437 (637)
.+.-...|+.|+-.-+.|+..+...++++..-.+.++-..+++..++..|..-+...-.-++..+++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 666666666666555556666666666666666666666566555555442222222222222222211
Q ss_pred ---------CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 006632 438 ---------SMDRA-IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG----VHPQKSTFLLLAEAR 503 (637)
Q Consensus 438 ---------~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~~~ 503 (637)
++.++ ...-.+|..... .....+..+..+.+.|+.++|.++|....+.+ ..|.......+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 11111 112233444333 44456666666788888888888887774322 234444555667777
Q ss_pred HHcCCHHHHHHHHHHHh
Q 006632 504 RATGLTKEAKRILSKIK 520 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~ 520 (637)
.+....-.|...++-|.
T Consensus 572 ~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 77788888888887774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-12 Score=124.31 Aligned_cols=429 Identities=9% Similarity=0.013 Sum_probs=256.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHH
Q 006632 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVE----ENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~ 153 (637)
|--+|++..-++.|..+++...+. ++.+...|.+-...--.+|+.+....++++.+ ..|+..+...|..=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344556666788888888888774 66688888777777777888877777766643 3466677777777667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPT--TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
..|.+-.+..+....+..|+.-. ..+|+.-...|.+.+.++-|+.+|....+. ++.+...|...+..--..|..++
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 77777777777776666665422 246666666777777777777777666654 34455666666666666666676
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-..+|+++... .+-....|......+-..|+...|..++.+..+... .+...|..-+..-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 66677666654 233455565556666666777777777666665543 2456666666666666667777777766655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
. .++..+|.--+...--.+..++|.++++..++.- +.-...|..+...+.+.++++.|...|..-.+. .+..+..|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 3555555555544455566666666666665542 223345566666666666666666666654443 23345556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
-.|...--+.|.+-.|..++++..-.+ |.|...|-..|..-.+.|+.+.|..+..++++. .+-+...|..-|....+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCc
Confidence 666666666666666766666666554 556666666666666666666666666555543 112233444444444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 472 RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++-..+.+.+++ .+-|+.....+...+....+++.|.++|++....
T Consensus 801 ~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 801 QRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred ccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 433333333222 1223333334444444444444444444444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-13 Score=124.40 Aligned_cols=364 Identities=16% Similarity=0.219 Sum_probs=240.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
-+.+..++..+|.++++-...+.|.+++++..+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 45677889999999999999999999999988776788899999998775433 33778888988888999999999
Q ss_pred HHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc--C-----CCCCCHHH
Q 006632 148 VINAFSESGNMEEA----MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE-SVKLLDLMSRE--G-----NVKPNLRT 215 (637)
Q Consensus 148 ll~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--~-----~~~~~~~~ 215 (637)
++...++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | ..+.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999987654 5677888999999999999999998888887744 44455555432 1 12335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006632 216 YNVLVRAWCNEKNITEAWNVMHKMAASG----MKPD---VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.++....+....+|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7778888888888888888776554321 2233 23345666777777888888888888877766677788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-
Q 006632 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG- 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 367 (637)
++++..-.|.++-.-+++.+++..|..-+. +-.++++..+....+.|+...-..+-.+.+++.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 888887888888888888777765522221 122334444444433343221112212111110
Q ss_pred Ch-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHH
Q 006632 368 FM-DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF----HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 368 ~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 442 (637)
++ +.....-.++.+. .......+.++..+.+.|+.++|.++|..+.+.+. .|......-++..-.+..+...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11 1111112223333 33455566666677888888888888888755432 22233333445555566667777
Q ss_pred HHHHHHHHHCC
Q 006632 443 IEVFDKMCEHG 453 (637)
Q Consensus 443 ~~~~~~m~~~~ 453 (637)
+.+++-|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 77777775543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-12 Score=129.90 Aligned_cols=369 Identities=13% Similarity=0.131 Sum_probs=259.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
+.+...-..++.+.-.|++++|..++.+++... +.+...|.+|...|-..|+.+++...+-.+.... +.|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 335555555666666799999999999999864 4588899999999999999999988776666554 77889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHH----HHHHHHHH
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL-RTY----NVLVRAWC 224 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~----~~li~~~~ 224 (637)
....+.|+++.|.-.|.+.++..++ +...+---+..|-+.|+...|.+-|.++.... ||.. .-+ -.+++.+.
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998644 55555566788999999999999999998864 3322 222 33455666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------------------
Q 006632 225 NEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----------------------- 280 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------------------- 280 (637)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....+
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 7777799999988887622 2335567788888999999999998887776552111
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHH
Q 006632 281 ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVI 354 (637)
Q Consensus 281 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 354 (637)
++..++ .+.-++......+....+........ +..+...|.-+..+|.+.|.+.+|..++..+.......+..
T Consensus 372 ~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 122221 11222233333333333333333333 23345577778888888888888888888887766555677
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHH
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE--------SGFHPNVVIF 426 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 426 (637)
.|-.+..+|...|..+.|.+.|..++... +.+..+-..|...|.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 78888888888888888888888887763 34566666777778888888888888877542 2234444444
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 006632 427 TTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~ 445 (637)
-.....+.+.|+.++-+.+
T Consensus 530 ~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 4455556666666554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-14 Score=132.24 Aligned_cols=439 Identities=15% Similarity=0.150 Sum_probs=222.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHH
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYT-TLLAALTIQKRFNSIHSIMSQVEENGMDPD------SIFFNA 147 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 147 (637)
...|.+.|..+....+|+..|+-+.+...-|+.-... .+...+.+...+..|++.|+..+.. .|. ..+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~n 281 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhh
Confidence 4456677777788889999998887765556554332 2345677778899999999877654 232 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----------CCCHHHH
Q 006632 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-----------KPNLRTY 216 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~ 216 (637)
+.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|....+. .|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666678899999999999998775 367776666666777889999999999998753211 1233333
Q ss_pred HHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHHHcCCHHHHH
Q 006632 217 NVLV-----RAWCNEK--NITEAWNVMHKMAASGMKPDVVT---Y------------------NTIATAYAQNGEADQAE 268 (637)
Q Consensus 217 ~~li-----~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~---~------------------~~li~~~~~~g~~~~A~ 268 (637)
+-.+ .-.-+.. +.++++-.--++...-+.||-.. | ..-..-+.++|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 2222211 12222222222222212222100 0 01234577889999998
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhh
Q 006632 269 EVIVEMEHNGVQPNGRTCGIIISGYCK--EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
++++-..+..-..-...-+.|-..+.- ..++..|.++-+...... +-+......-.+.-...|+++.|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 888777654322222222222221111 223444444444443221 22222222222222334555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
....-....|+ +.-.+...|++++|+..|-++..- +..+..+...+...|....+...|++++-+.... ++.|+.+.
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 32111111122 222334455555555555443321 1224444444555555555555555555444433 34445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH
Q 006632 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA-EARRA 505 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~ 505 (637)
..|...|-+.|+-..|.+.+-+-... ++-|..+...|..-|....-+++++.+|++..- +.|+..-|..|+ .++.|
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 55555555555555555444333222 223444544455445555555555555554432 445555554433 23344
Q ss_pred cCCHHHHHHHHHHHhhhhc
Q 006632 506 TGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 506 ~g~~~eA~~~~~~~~~~~~ 524 (637)
.|++..|..+++....+.|
T Consensus 673 sgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred cccHHHHHHHHHHHHHhCc
Confidence 4555555555555544433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-12 Score=130.06 Aligned_cols=363 Identities=13% Similarity=0.132 Sum_probs=266.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
.....+...|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-......+. |...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 33444556699999999999999886 778899999999999999999999888777666544 7789999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHH
Q 006632 192 KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN----TIATAYAQNGEADQA 267 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A 267 (637)
.++.|.-.|.+..+.. |++...+---...|-+.|+...|..-|.++.....+.|..-+. ..+..+...++-+.|
T Consensus 222 ~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999875 6676677777888999999999999999998874322322222 345567777888999
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHH
Q 006632 268 EEVIVEMEHNG-VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV---------------------------HPNLV 319 (637)
Q Consensus 268 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~ 319 (637)
.+.++.....+ -..+...++.++..|.+...++.|......+..... .++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99888876622 224566788999999999999999988877765211 22222
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
++ -+.-++......+....+...+.... +.-+...|.-+..+|...|++..|+.+|..+.......+..+|-.+..+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 21 12222333344444444444444444 3335667888888888889999999888888876545567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE--------HGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~ 469 (637)
|...|..+.|.+.|+.++... |.+...-..|-..+-+.|+.++|.++++.+.. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 888888999998888888764 55666677777788888888888888887542 234445555555666777
Q ss_pred hcCChhHHHHH
Q 006632 470 EARQPWRAEEI 480 (637)
Q Consensus 470 ~~g~~~~A~~~ 480 (637)
..|+.++=+..
T Consensus 538 ~~gk~E~fi~t 548 (895)
T KOG2076|consen 538 QVGKREEFINT 548 (895)
T ss_pred HhhhHHHHHHH
Confidence 77777664443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=125.10 Aligned_cols=418 Identities=12% Similarity=0.070 Sum_probs=256.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
...+-...+-+.++|++++|++.|.+.++. .|+ +.-|.....+|...|+|+++.+--.+.++.+ +.-+..+..-..
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRAS 191 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 444556678889999999999999999984 677 7888889999999999999998888777753 333456666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--------HHHHh--cCCCCCCHHHHHHHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL--------DLMSR--EGNVKPNLRTYNVLV 220 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~--~~~~~~~~~~~~~li 220 (637)
++-..|++++|+.=. +..++..++....-.-.+.+++ .+-.+ ...+-|+.....+..
T Consensus 192 A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 777888888775322 2222222222222222222222 11111 112334444433333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh---CCCCCC---------hhhHH
Q 006632 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-NGEADQAEEVIVEMEH---NGVQPN---------GRTCG 287 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~---~~~~~~---------~~~~~ 287 (637)
..+...-. ..+...+-..|...-..+=..+.. ...+..|...+.+-.. .....+ ..+..
T Consensus 259 ~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 259 GSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred hhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 33211000 000000000011100001000100 0122223222222110 000011 12222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 006632 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 367 (637)
.....+.-.|+.-.|..-|+..++... .+...|--+..+|....+.++....|....+.++ .++.+|-.-...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHH
Confidence 223344557888888888888887652 2333377777778888888888888888887764 35566666666777788
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|..-|++.+... +.+...|-.+.-+..+.+.++++...|++.++. +|.-+..|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8999999999888764 335666767777777888999999999998876 56677888888888999999999999999
Q ss_pred HHHHCCCC-----CCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 448 KMCEHGVS-----PNLKTF--ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 448 ~m~~~~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..++.... .+...+ -+++..=+ .+++..|..++++..+ +.|.-+ .|..|.....+.|+.++|+++|++.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88874211 122222 22222222 3788889999988877 556644 7888999999999999999999887
Q ss_pred h
Q 006632 520 K 520 (637)
Q Consensus 520 ~ 520 (637)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=132.90 Aligned_cols=289 Identities=10% Similarity=0.045 Sum_probs=147.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN--TIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~ 266 (637)
.|+++.|.+.+....+.. ++... +........+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 466666665555544321 12222 222233335556666666666665543 23322211 22445555566666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhh
Q 006632 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
|...++++.+..+ .+......+...|.+.|++++|..++..+.+.+..+ ......+-
T Consensus 172 Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~--------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH---------------------
Confidence 6666655555432 234555555555555566666665555555543221 11111000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +||....
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 001111222222223334444444444332 2345566666666666677777777766666653 3444221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006632 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
++.+....++.+++++..++..+... -|+..+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc
Confidence 22233344666667776666665432 2444566666677777777777777766665 556666666677777777
Q ss_pred CCHHHHHHHHHHHh
Q 006632 507 GLTKEAKRILSKIK 520 (637)
Q Consensus 507 g~~~eA~~~~~~~~ 520 (637)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~~~~~l 388 (398)
T PRK10747 375 HKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766666553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-13 Score=126.57 Aligned_cols=430 Identities=12% Similarity=0.059 Sum_probs=280.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 006632 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF-FNAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKG 186 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~ 186 (637)
.|..-|....-..+|+..|+-+.+...-|+.-. -..+...+.+...+.+|+++|+-....-+..+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344555556667889999988887766666433 23345667788899999999987765422222 2234444556
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHHHHH
Q 006632 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK------------PDVVTYNTI 254 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~------------~~~~~~~~l 254 (637)
+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|.+|...-.. |+....+.-
T Consensus 286 fiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred EEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 788999999999999998864 88888777888888899999999999999865322 233333322
Q ss_pred HH-----HHHHcC--CHHHHHHHHHHHHhCCCCCChhh---H------------------HHHHHHHHhcCCHHHHHHHH
Q 006632 255 AT-----AYAQNG--EADQAEEVIVEMEHNGVQPNGRT---C------------------GIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 255 i~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~~~ 306 (637)
+. -..+.+ +.++++-.-.+++..-+.|+... | -.-..-|.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 12222222222222112222110 0 11244788999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHH-HHHHH-cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006632 307 RTMKEYGVHPNLVIFNLLI-KGFVE-IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
+-..+..-+.-...-+.+- --|.+ -.++..|...-....... ..+......-...-...|++++|...+++.+...-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 9887653222222222222 22233 345667776666655432 22333333333344568999999999999986531
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
........+.-.+-+.|++++|++.|-++... +..+..+...+...|-...+...|++++-+.... ++-|+..+..|
T Consensus 522 -sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 -SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred -HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 12233333445678999999999999887653 2457788888999999999999999999887664 55578899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------ccccccc
Q 006632 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEED 533 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~ 533 (637)
...|-+.|+...|.+++-.--++ +.-+.++..-+..-|....-++.|+.+|+++.-..|.. ...++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 99999999999999876543221 33456677777778888889999999999985333321 2346777
Q ss_pred chHHHHHHHHhhhccC
Q 006632 534 IPVESLERLYHKEATT 549 (637)
Q Consensus 534 ~a~~~~e~~~~~~~~~ 549 (637)
.|...++.+-..-|.+
T Consensus 678 ka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHhCccc
Confidence 7777766665544544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-11 Score=112.94 Aligned_cols=293 Identities=14% Similarity=0.083 Sum_probs=171.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcC
Q 006632 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKEG 297 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 297 (637)
..++....+.++++.-.......|++.+...-+....+.....++++|+.+|+++.+..+- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3444455566666666666666666555555555555556666777777777777665221 1344554443 22222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006632 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
+-. +.++.+-...--+-.+.|...+.+-|+-.++.+.|...|+...+.++ .....|+.+..-|....+...|+..++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 11111111100123344555566666666667777777777766653 345566666677777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
..++-. +.|-..|-.|.++|.-.+...-|+-.|++..+.. |.|...|.+|+.+|.+.++.++|++.|......|-. +
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 776654 4466677777777777777777777777776653 556677777777777777777777777777665432 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 458 LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
...+..|...+-+.++..+|..+|++-.+ .|...+ .....-+..-+.+.+++++|..+.....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56677777777777777777766665432 222222 1122224445566677777766665553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=132.64 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=133.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006632 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
.++.+.|+++.|.+.+.+..+....+...........+...|+++.|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 3444444444444444444332211111122223444444455555555555544442 233344444444555555555
Q ss_pred hHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHH
Q 006632 336 GVDEVLALMKEFRVNPDVITYS-TIMNAW---STAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVREQEPEKAE 408 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 408 (637)
++.+.+..+.+.++. +...+. .-..++ ...+..+.+...+..+.+.. .+.+...+..++..+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555554444322 111111 111111 11112222222333333221 1136677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHH
Q 006632 409 ELLMTMIESGFHPNVVI---FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 409 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+++++..+.. ||... ...........++.+.+++.+++..+... -|+ ....++...|.+.|++++|.++|+.
T Consensus 284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7777777652 33221 11122222344667777777777766421 133 4556777788888888888888885
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 484 MKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 484 m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.......|+.+.+..+..++.+.|+.++|.+++++.
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 433346677777778888888888888888887765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-12 Score=131.05 Aligned_cols=289 Identities=12% Similarity=0.039 Sum_probs=187.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006632 189 IAGKPEESVKLLDLMSREGNVKPN-LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
..|+++.|.+.+.+..+.. |+ ...+-....++...|+.+.|...+.+..+....++..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4677777777776665542 33 3333444556666777777777777765542122222333346666777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcCCHhhHHHHHHH
Q 006632 268 EEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFN-LLIKGF---VEIMDRDGVDEVLAL 343 (637)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 343 (637)
...++.+.+..+ .+..++..+...|.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777776643 34566667777777777777777777777766532 222221 111111 222222222334433
Q ss_pred HhhCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHH--HHHcCCHHHHHHHHHHHHHC
Q 006632 344 MKEFRV---NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA-YSILAKG--YVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 344 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 417 (637)
+.+..+ +.+...+..+...+...|+.++|.+++++..+.. ||... ...++.. ....++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333221 2377888888889999999999999999988864 33321 1012222 23457788899999888776
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 418 GFHPNV--VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 418 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 5566 67789999999999999999999964444456899989999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-12 Score=128.89 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=192.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN--VLVRAWCNEKNIT 230 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~ 230 (637)
..|+++.|++.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999999888876642 223333333 45557899999999999999875 35543332 3467889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHH
Q 006632 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII-SGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~ 309 (637)
.|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+.+..+ ......+- .+|
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~---------------- 232 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW---------------- 232 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH----------------
Confidence 9999999998875 4467888899999999999999999999999876532 22221110 111
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006632 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +++..
T Consensus 233 ------------~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 233 ------------IGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 00111111112223334444443322 1345666667777777777777777777777663 34442
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.. ++.+....++.+++++..+...+.. +.|...+..+...|...|++++|.+.|+++.+ ..|+..++..+..++.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence 22 2233334577777777777777663 55666677777777777888888888877776 3477777777777777
Q ss_pred hcCChhHHHHHHHHHH
Q 006632 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
+.|+.++|.+++++-.
T Consensus 373 ~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 373 RLHKPEEAAAMRRDGL 388 (398)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 7888888877777653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=143.09 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=102.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 77 KLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
.+...+.+.|++++|++++....... .+.|+..|..+...+...++++.|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34677778889999988886554432 12344555555556667788888888888888765 3456667777766 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+++++|.+++++..+.. ++...+..++..+.+.++++++.++++.+......+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 4566677788888888888888888888776544456777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006632 236 MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 315 (637)
+++..+.. +.|....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888763 2246677788888888888888888777776553 3456677788888888888888888888887653 5
Q ss_pred CCHHHHHHHHHHHHHcCCHhhHHHHHHHHh
Q 006632 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMK 345 (637)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (637)
.|+.+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 577777778888888888888877776653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=143.95 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006632 220 VRAWCNEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444455555555555553332221 1223333334444444455555555555555443321 33334444444 44555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006632 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
+++|.+++....+. .++...+...+..+...++++.+.++++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555554444322 2333334444444444455555555444443211 12334444444444555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+.++.. +.|..+...++..+...|+.+++..++....+.. +.|+..|..+..+|...|+.++|+..|++..+... .|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cc
Confidence 554432 1234444445555555555555444444444332 33334444555555555555555555555444321 14
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006632 458 LKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+.....+..++...|+.++|.++.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444455555555555555544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-10 Score=109.71 Aligned_cols=312 Identities=15% Similarity=0.155 Sum_probs=232.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH
Q 006632 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM--KPDVVTYNTIATAYAQ 260 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~ 260 (637)
+..++....+.++++.-.+.....| ++.+...-+....+.-...++++|+.+|+++.+... --|..+|+.++- .+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 3455666667888888888887776 555555555566667788999999999999998731 125677776653 33
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHH
Q 006632 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 340 (637)
+.+-.-+ .+.+-.-.--+--+.|+..+.+-|.-.++.++|..+|++..+.+ +.....|+.+..-|....+...|.+.
T Consensus 310 ~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 3322211 11111111012245778888999999999999999999999876 55677899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006632 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
++..++.. +.|-..|-.|..+|.-.+...-|+-.|++..... +.|...|.+|...|.+.++.++|++.|......| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999987 4589999999999999999999999999998864 5689999999999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006632 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKTF---ETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.+...+..+...|-+.++.++|...|++-++ .|.. +..|. .-|..-+.+.+++++|..+.......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------
Confidence 4668999999999999999999999988765 2333 33222 22444555666666665544333221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 494 STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-..+||..+++.+...
T Consensus 537 ------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRKI 553 (559)
T ss_pred ------------CchHHHHHHHHHHHHHh
Confidence 23457788777776443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-09 Score=104.41 Aligned_cols=438 Identities=11% Similarity=0.056 Sum_probs=323.0
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL-VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+++..|..-+.+=.++.....|+.++++.... .|-+ ..|.-.+..--..|+...|.++|++-.. ..|+...|+
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~ 178 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWL 178 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHH
Confidence 3467788888899999999999999999999874 4433 2455555555567999999999998766 489999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHh
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN-VKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~ 225 (637)
+.|+.=.+-..++.|..++++.+-. .|++.+|......-.++|....|..+|+...+.-+ -..+...+.+....-.+
T Consensus 179 sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 48999999999999999999999999998876420 01123345555555567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhCCCCCChhhHHHHHHHHHh
Q 006632 226 EKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEV--------IVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
+..++.|.-+|+-.++. ++.+ ...|......=-+-|+....... |+.+++.+ +.|-.+|-..++.-..
T Consensus 257 qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHh
Confidence 88899999999988876 2333 34444444444445654433332 34455443 3577788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH--------HHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH--
Q 006632 296 EGKIKEALRFARTMKEYGVHPNLV--IFNLLI--------KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW-- 363 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 363 (637)
.|+.+...++|++.+..- +|-.. .|.-.| -.-....+.+.+.++++..++. ++...+||.-+=-.|
T Consensus 335 ~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH
Confidence 999999999999998763 44211 222111 1123567888899999988874 455566666554444
Q ss_pred --HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 364 --STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 364 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
.++.++..|.+++...+. .-|...++...|..-.+.++++.+.+++++.++-+ |.|-.+|......-...|+.+.
T Consensus 413 feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence 367889999999998764 47889999999999999999999999999999876 6788999999888889999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HcC--------
Q 006632 442 AIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARR-----ATG-------- 507 (637)
Q Consensus 442 A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g-------- 507 (637)
|..+|+-++... +......|-+.|..=...|..+.|..+++++.+. .+-...|..+..--. ..|
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhc
Confidence 999999998752 2223446777777778899999999999999762 233334444443222 333
Q ss_pred ---CHHHHHHHHHHHh
Q 006632 508 ---LTKEAKRILSKIK 520 (637)
Q Consensus 508 ---~~~eA~~~~~~~~ 520 (637)
.+..|..+|+++.
T Consensus 568 ~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 568 TDENIKRARKIFERAN 583 (677)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4567777777764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=128.41 Aligned_cols=286 Identities=17% Similarity=0.091 Sum_probs=223.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHH
Q 006632 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
-+..+|...|..+... +.-...+...+..+|...+++++|+++|+.+.+... -.+..+|.+.+--+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 4567888999886554 233446667788999999999999999999876521 1255667766554422 22333
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 305 FA-RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
++ +.+++.. +..+.+|.++.+.|.-.++.+.|++.|+..++.++ ....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 3333332 56788999999999999999999999999988652 377888888888889999999999999987643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
+.+-.+|.-|...|.|+++++.|+-.|+++.+.+ |.+.+....++..+.+.|+.++|+.+|+++...+.+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2245566667888999999999999999999876 667888888899999999999999999999987654 6666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.+..+...++.++|+..++++++ +.|+.. .+..++..|.+.|+.+.|..-|.-+....|
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 67778889999999999999988 777765 678899999999999999988877655544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-11 Score=108.78 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 006632 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN--LRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 234 (637)
+.++|.++|-+|.+.... +..+-.+|.+.|-+.|..|.|+++...+.+..+.+-+ ....-.|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344444444444443211 2223334444444444444444444444432111000 1122233334444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 235 VMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+.++.. ..|..|...+....+++.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444444322 112233334444455555555555554444443322221 112222333333344444455444444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006632 311 EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+.+ +..+..--.+.......|++..|.+.++.+.+.++..-..+...|..+|.+.|+.++....+..+.+
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 1222222233344444455555555555544444333334444455555555555555555554444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-12 Score=125.19 Aligned_cols=284 Identities=10% Similarity=0.020 Sum_probs=219.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 006632 192 KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM--KPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
+..+|+.+|..++.. +..+......+..+|...+++++|.++|+.+.+... .-+..+|.+.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567899999987664 344456777888999999999999999999987521 1245667666543322 22222
Q ss_pred HHH-HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006632 270 VIV-EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
.+. .+... -+..+.+|.++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 222 22222 13457899999999999999999999999998764 3356778888777888888999999998887643
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
+ .+-..|-.+...|.+.++++.|+-.|+++.+-+ +.+.+....+...+.+.|+.++|+.+++++...+ +.|+..--.
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2 244556667888999999999999999998875 4467778888889999999999999999998875 667776667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006632 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.+..+...+++++|+..++++.+. .|+.. .|..++..|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 777888899999999999999984 56554 78888999999999999999888887633
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=106.00 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=183.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCh
Q 006632 120 QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT------STYNTLIKGYGIAGKP 193 (637)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~ 193 (637)
.++.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|.++.|+++...+.++ ||. .+..-|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 346677777777777643 445556666777777777777777777777664 331 2334455667777777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 006632 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~ 269 (637)
|.|..+|..+.+.+. --....--|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+++.|..
T Consensus 124 DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777777777766542 23455666777777777888887777777766543332 344556666666777888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC
Q 006632 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
++.+..+.+. ..+..--.+.+.+...|+++.|++.++.+.+.+..--..+...+..+|.+.|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8877776543 234445556677788888888888888887764333445677777888888888888888877766543
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Q 006632 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV---REQEPEKAEELLMTMIE 416 (637)
Q Consensus 350 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 416 (637)
.++.. ..+...-....-.+.|...+.+-++. .|+...+..|++.-. ..|...+.+.+++.|+.
T Consensus 281 g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33332 33333333444455566555554444 578888888887654 23445666666666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-10 Score=106.88 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=175.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++.+|.++..+-.+.+ +.....|..-+.+.-..|+.+.+-.++.+.-+.--.++....-+........|+...|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 577777777777665544 223444555556666677777777777777665334455556666677777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHhhHHHHHH
Q 006632 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL-------VIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
-.+++.+.+. .+..+......+|.+.|++.+...+...+.+.+.-.+. .+|..+++-....+..++....++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 7777766654 35566677777777777777777777777776654443 244545544444444444444555
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006632 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
...+. .+.++..-.+++.-+.++|+.++|.++..+..+.+..|. .. ..-.+.+-++.+.-++..++-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 54332 233455555666666777777777777777666654443 11 1122345566666666665555442 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+..+.+|+..|.+++.+.+|...|+...+ ..|+..+|..+..++.+.|++.+|.+.+++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56666777777777777777777776655 34667777777777777777777777666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-10 Score=106.54 Aligned_cols=286 Identities=14% Similarity=0.158 Sum_probs=232.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006632 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
..|++..|+++..+..+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+....++..+.-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999998877633 4455666677888899999999999999886445677778888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHH
Q 006632 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVI-------TYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
-+.++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.+.. +|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998876 6678889999999999999999999999999988765543 46666665555555555556676
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++...-++..++-.+.- +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 66543 3456777888899999999999999999999988766652 22334667788888888887776542 235
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 458 LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|.-+.+++.+.|+..+|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 57889999999999999999999998777 77999999999999999999999999988765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-10 Score=108.40 Aligned_cols=289 Identities=10% Similarity=0.014 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
.-+......-..-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-..+-.++.+.- |....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34556666667777888999999999998887643 566666666778888888877777777776653 5567789888
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006632 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
.--|...|...+|.+.|......+. .-...|-.....|+-.|..++|...+...-+.- +-..--+--+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 8888888999999999988766542 234678888888999999999998888776531 11111122234457788899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHHHhcCChhHHH
Q 006632 405 EKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVS---P-NLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
+.|.+.|.+..... |.|+...+-+.......+.+.+|..+|+..+.. .+. + -..+++.|+.+|.+.++.++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988764 678888888888888888999999999887731 111 1 2346888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhh
Q 006632 479 EILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHK 545 (637)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~ 545 (637)
..+++..... .-+..++..++-.+...|+++.|...+++..-..|. ...+.+.+..+++.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~------n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD------NIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHh
Confidence 9999887632 225678888998999999999999999998877653 23556666666664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-10 Score=108.87 Aligned_cols=390 Identities=11% Similarity=0.054 Sum_probs=224.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
-....-|.++|.+++|++.|.+.+.. .|| +..|.....+|...|++++..+--.+..+.++. -+..+..-.+++-+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 33455677899999999999999985 577 888999999999999999998888888776432 34566677778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHcCCHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA-SG--MKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g--~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
.|++++|+.-..-..-.+++. |.. ...++.-..+. .|....++-.+ .+ +-|+.....+....+...-.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s-~~~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~--- 266 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NAS-IEPMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK--- 266 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cch-hHHHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc---
Confidence 888888764332222111111 111 11111111111 11112222222 11 22333333333322211000
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC---CCC---CCH------HHHHHHHHHHHHcCC
Q 006632 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKE-GKIKEALRFARTMKEY---GVH---PNL------VIFNLLIKGFVEIMD 333 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~---~~~---~~~------~~~~~ll~~~~~~~~ 333 (637)
..+...+...|...-..+=..+... ..+..|...+.+-... ... .|. .+.......+.-.|+
T Consensus 267 -----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 267 -----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0000000000111111110111110 1122333222221100 000 111 111111222334577
Q ss_pred HhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
..++.+-|+..+.....++. .|--+..+|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877644333 26667777888888899999999888775 44777888888888888899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 006632 414 MIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ- 492 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 492 (637)
.+... +.+...|-.+..+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+...+ ++|+
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~ 495 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPRE 495 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hcccc
Confidence 88774 556677777777777888999999999988875 434567888888889999999999999988765 4444
Q ss_pred ------HHHHH--HHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 493 ------KSTFL--LLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 493 ------~~~~~--~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
...+. .++ .+.-.+++.+|+++++++.+..|
T Consensus 496 ~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred ccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc
Confidence 11111 111 11222666666666666655544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-09 Score=99.36 Aligned_cols=118 Identities=10% Similarity=0.101 Sum_probs=50.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL-MWGYSEARQPWR 476 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~ 476 (637)
+.-..++++.+..++.+..--...|.. --.+..+++..|++.+|.++|-.+....++ |..+|.++ .++|.+.++++-
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 333444555555555554432122222 223445555555555555555544433332 33344332 334455555555
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 477 AEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|++++-++. -..+.. ....+.+.|...+.+=-|-+.|+.+.
T Consensus 447 AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 447 AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 554433221 111111 12233444555555544444444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-08 Score=98.03 Aligned_cols=422 Identities=14% Similarity=0.109 Sum_probs=242.2
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 84 ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 163 (637)
..|+.++|......-...+ ..+.+.|..+.-.+...+++++|+..|..+++.+ +.|..++.-|.-.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 4466667766666655532 3466667776666666667777777777777665 5556666666555566666666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHHH
Q 006632 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV------RAWCNEKNITEAWNVMH 237 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~~~~ 237 (637)
.-....+..+. ....|..++.++.-.|+...|..+++...+.....|+...+.-.. ....+.|.+++|.+.+.
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55555554322 455677777777777777777777777665543335554443222 23345666666666665
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-HHHhcCCHHHHH-HHHHHHHHCCC
Q 006632 238 KMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS-GYCKEGKIKEAL-RFARTMKEYGV 314 (637)
Q Consensus 238 ~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~ 314 (637)
.-... ..|.. .-..-...+.+.+++++|..++..++..+ ||...|...+. ++.+-.+.-+++ .+|....+.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-- 283 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-- 283 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--
Confidence 54322 11222 22344556667777777777777776653 45444444333 332333333343 444444332
Q ss_pred CCCHHHH-HHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----CC------
Q 006632 315 HPNLVIF-NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK----AG------ 383 (637)
Q Consensus 315 ~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~------ 383 (637)
.|....- ..=++......-.+.....+..+.+.|+++ ++..+.+.|-.-...+-..++...+.. .|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1111100 000111111111233444555566666543 334444444322222212222222211 11
Q ss_pred ----CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006632 384 ----IKPDAHAYS--ILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 384 ----~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
-+|....|+ -++..|-+.|+++.|..+++..+.. .|+. ..|..=...+...|++++|...+++..+.+. |
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-A 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-h
Confidence 145555554 4567788999999999999999876 5554 4555666789999999999999999998753 4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHH----HHHH--HHHHHHHcCCHHHHHHHHHHHh
Q 006632 457 NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH--PQKS----TFLL--LAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~----~~~~--l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|...=..-..-..++.+.++|.++.....+.|.. -+.. .|-. =+.+|.|.|++.+|.+-+..+.
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 6554445566667889999999999888766641 1111 1221 2467899999999998888875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-08 Score=97.46 Aligned_cols=431 Identities=12% Similarity=0.093 Sum_probs=287.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
..+-.++..| ..+++...+++.+.++.. .+-...+.....-.+...|+.++|....+..++.+ ..+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 3444445544 567889999999988873 34455555555555667899999999888877755 45667888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006632 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
-...++++|++.|......+.. |...|.-+.-.-++.++++.....-....+.. +.....|..++.++.-.|+...|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999987644 67788888877888899998888877777653 44567899999999999999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006632 233 WNVMHKMAASG-MKPDVVTYNTIA------TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 233 ~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
..+++...+.. -.|+...+.... ......|.++.|.+.+..-... +......-..-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999998764 246665554333 3345678888888877655432 212233445567788999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCHhhHH-HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 306 ARTMKEYGVHPNLVIFNLLIKGFV-EIMDRDGVD-EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
+..++.. .||..-|...+..+. +..+.-++. .+|....+.-+..... ...-++......-.+....++....+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999877 466665555544433 333333444 5565554432111111 1111111112223344455666677777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC----------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHH
Q 006632 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIE----SG----------FHPNVVIFTT--IISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~ 447 (637)
+++ ++..+...|-.-...+-..++.-.+.. .| -+|....|+. ++..+-..|+++.|+.+.+
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 444444444322211111111111111 10 1567776664 5667889999999999999
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 448 KMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 448 ~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.++.+ .|+.+ .|..-.+.+.|.|..++|...+++..+.. .||...-..-+.-..++.+.++|.++..+-
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 99885 57765 67777889999999999999999987643 235444445566677888888888877665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-09 Score=103.90 Aligned_cols=282 Identities=10% Similarity=0.039 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 256 (637)
......-..-+...+++.+..++++.+.+.. |+....+..-|.++...|+..+-..+=.++.+. .+....+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333344444444555555555555555443 334444444444444555544444444444433 1223444554444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh
Q 006632 257 AYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (637)
.|...|..++|.+.|.+....+. .-...|-.....|+-.|..++|...+...-+.- +-...
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hl----------------- 381 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHL----------------- 381 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcc-----------------
Confidence 44444555555555544332211 012334444444444444444444444333210 00000
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+. --+..-|.+.+.++.|.+.|.+..... +.|+.+.+-+.-.....+.+.+|..+|+....
T Consensus 382 ----------------P~--LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 382 ----------------PS--LYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred ----------------hH--HHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 11 112223444555555555555544432 33445555554444445555555555554431
Q ss_pred C--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006632 417 S--GF----HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 417 ~--~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
. .+ ..-..+++.|+.+|.+.+.+++|+..|++.+.... -|..++.++.-.+...|+++.|++.|.+... +.
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~ 519 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LK 519 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cC
Confidence 0 00 01223445555555555555555555555554422 2455555555555555555555555555433 55
Q ss_pred CCHHHHHHHHHH
Q 006632 491 PQKSTFLLLAEA 502 (637)
Q Consensus 491 p~~~~~~~l~~~ 502 (637)
|+..+...++..
T Consensus 520 p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 520 PDNIFISELLKL 531 (611)
T ss_pred CccHHHHHHHHH
Confidence 555444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-08 Score=95.13 Aligned_cols=163 Identities=9% Similarity=0.023 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+..|-.-...+.++|+...-+..|+..+.. .+......|...+......+-++.+..+|++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677778889999999999887763 11123346788888888888888899999988864 3334666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCC--HHHHHHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESG------LTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPN--LRTYNVL 219 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~--~~~~~~l 219 (637)
.+++.+++++|.+.+....... .+.+-..|.-+-...+++-+.- ....++..+... -+| ...|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHH
Confidence 7888888888888877664321 1113334444444444332211 122233333222 123 2456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006632 220 VRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~ 241 (637)
..-|.+.|.++.|..+|++...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 6666666666666666666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-10 Score=117.88 Aligned_cols=269 Identities=11% Similarity=-0.018 Sum_probs=181.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 006632 104 KPSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE---------SGNMEEAMDTFWKMK 169 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~ 169 (637)
..+...|...+++... .+++++|...|++.++.. |.+...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666665555322 134578888898888764 4455566666555442 234788999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006632 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
+.++. +...+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|+..+++..+.... +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 87654 67788888888888999999999999988865 556778888888899999999999999998876422 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3334455566688899999999888765433345557778888888999999999998876542 233445556666666
Q ss_pred HcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 330 EIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 46666666554421 11221222 33344556777766666 7776643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-07 Score=92.92 Aligned_cols=266 Identities=12% Similarity=0.157 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------
Q 006632 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN---GRTCGIIISGYCKEGKIKEALRFARTMKEYGVH----------- 315 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------- 315 (637)
.|..+...|-..|+++.|..+|++..+...+-- ..+|..-..+=.+..+++.|+++.++.....-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 344555555555555555555555544322110 122333333333444455555554444321100
Q ss_pred ------CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H
Q 006632 316 ------PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-A 388 (637)
Q Consensus 316 ------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 388 (637)
.+...|...++.--..|-++....+++.++...+.....+.| ....+....-++++.+++++-+..-..|+ -
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 012233333333334444455555555554444322211111 11122333445555555554333221222 2
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 006632 389 HAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVIFTTII--SGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTF 461 (637)
Q Consensus 389 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 461 (637)
..|+..+.-+.+ ...++.|..+|++..+ +.+|...-+--|+ ..--..|....|+.+++++... +++.. ..|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~my 625 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 344444443332 2345666666666665 3343322111111 1112346666666666665432 32222 245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS---TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+..|.--...=-+.....+|++..+ .-|+.. ......+.=+..|.++.|..++.-..
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 5544433332223344555555554 234432 33345566677788888888876664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-10 Score=105.21 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3344444444444555555555554444321 1233344444444444444444444444444432 2233334444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006632 152 FSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~ 169 (637)
+...|++++|...|++..
T Consensus 109 ~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=115.91 Aligned_cols=269 Identities=7% Similarity=-0.021 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 006632 139 DPDSIFFNAVINAFSE-----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI---------AGKPEESVKLLDLMS 204 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 204 (637)
+.+...|...+.+-.. .++.++|...|++..+..+. +...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4555656555555322 23468999999999987543 55667666665542 244789999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh
Q 006632 205 REGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 205 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
+.. |.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus 332 ~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 875 5678899999999999999999999999999875 335677888999999999999999999999887543 233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006632 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
.+..++..+...|++++|+..++++.....+.+...+..+..++...|+.++|...+..+.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3444555677789999999999998765423355567778888999999999999999876653 234455566666777
Q ss_pred HcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006632 365 TAGFMDKCKEIFDDMGKAG-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..| +.+...++.+.+.. ..+....+ +...|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47888777766531 11222222 44556677888877766 8887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-10 Score=103.87 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
.....+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+..+. +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 346678888899999999999999999998765 556788889999999999999999999999887543 667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006632 185 KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA 264 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 264 (637)
..+...|++++|.+.|++.......+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998753233456678888999999999999999999998764 33567888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 3345677778888999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=103.80 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=197.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006632 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
-+.+..+|.+.|.+.+|.+.|+..... .|-+.||..+-.+|.+..++..|..++.+-.+.- +-|+.....+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999988776 6778889999999999999999999999987753 3455555677888899
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+.+++++.+.| .-++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998874 4577777778888999999999999999999998 56889999999999999999999999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 446 FDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 446 ~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
|++....--.|+. ..|-.+.......|++.-|.+.|+-.... .|+ .+.++.+.-+-.+.|++++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999875444554 47888888889999999999999987653 233 568888888889999999999999999877
Q ss_pred hcc
Q 006632 523 ERT 525 (637)
Q Consensus 523 ~~~ 525 (637)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-08 Score=99.30 Aligned_cols=407 Identities=14% Similarity=0.076 Sum_probs=225.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 006632 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT-STYNT 182 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ 182 (637)
.-|+..|..+.-++...|++..+-+.|++....- -.....|..+...|...|.-..|..+++.-......|+. ..+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3456666666666666666666666666655432 223455666666666666666666666655443322322 22222
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCCC
Q 006632 183 LIKGYG-IAGKPEESVKLLDLMSREGN---VKPNLRTYNVLVRAWCN-----------EKNITEAWNVMHKMAASGMKPD 247 (637)
Q Consensus 183 li~~~~-~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~~g~~~~ 247 (637)
.-..|. +.+..+++++.-.+.....+ -......+..+.-+|.. .....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 223332 23444444444444333100 01123334444333321 11234566666666554321 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKG 327 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (637)
+.....+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 222222334455666666666666666665444566666666666666666666666666554321 1111111111111
Q ss_pred HHHcCCHhhHHHHHHHHhh----------------------------CCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHH
Q 006632 328 FVEIMDRDGVDEVLALMKE----------------------------FRVNPDVITYSTIMNAWS-TAGFMDKCKEIFDD 378 (637)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 378 (637)
-...++.+++......+.. ..+.-...++..+..-.. +.........
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---- 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---- 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----
Confidence 1112222222222111110 011111222222222211 1111110001
Q ss_pred HHHCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 379 MGKAGIK--PD------AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 379 ~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+.+.... |+ ...|......+.+.+..++|...+.+..+.. +-....|...+..+...|...+|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1211111 22 3456667778889999999999998887763 5566777878888899999999999999998
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCChhHHHH--HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 451 EHGVSPNLK-TFETLMWGYSEARQPWRAEE--ILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 451 ~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.. .|+.+ ...++...+...|+..-|.. ++..+.+ +.|+ .+.|-.++.++...|+.++|.+.|..+...
T Consensus 712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 AL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 84 46654 89999999999998888877 8888887 4454 679999999999999999999999887554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-09 Score=105.91 Aligned_cols=425 Identities=13% Similarity=0.105 Sum_probs=223.9
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.|+=++|..+|..|+..|+.+.|- +|.-|.-.+.+.+...|+.++.+....++.+.+. .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 344589999999999999999888 8888877666667788888888887777776654 5778889999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHHH----CCCCCCHHHH---------------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 149 INAFSESGNMEE---AMDTFWKMKE----SGLTPTTSTY---------------NTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 149 l~~~~~~g~~~~---A~~~~~~m~~----~~~~~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
..+|...||+.. ..+.++.+.. .|+- ....| ...+....-.|-++.+++++..++..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999998888654 2222222211 1211 11111 11223333445555555555544433
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 006632 207 GNVKPNLRTYNVLVRAWCN-EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRT 285 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 285 (637)
....|..+ .++-+.. ...+++-..+.....+ .|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-
T Consensus 169 a~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred cccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 21112111 1222221 1222332222222222 36666777777776677777777777777777776666555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh------------------------HHHHH
Q 006632 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG------------------------VDEVL 341 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~------------------------a~~~~ 341 (637)
|-.|+-+ .++..-+..+++.|...|+.|+..|+...+..+..+|.... +.+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 5555444 56666666666666667777766666555544444322111 10100
Q ss_pred H------------HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC---
Q 006632 342 A------------LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KPDAHAYSILAKGYVREQE--- 403 (637)
Q Consensus 342 ~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 403 (637)
+ ...-.|......+|...... ...|.-+...++-..+..-.. ..++..|..++.-|.+.-+
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 0 00001222222333322222 234555555555555432110 1123333333333322111
Q ss_pred ----------------HHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHHhcCCH
Q 006632 404 ----------------PEKAEELLMTMIESGFHPNV----------------------------VIFTTIISGWCSDGSM 439 (637)
Q Consensus 404 ----------------~~~A~~~~~~~~~~~~~~~~----------------------------~~~~~li~~~~~~g~~ 439 (637)
.+..-++-+-+... .||. ..-+.++..++..-+.
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~l--rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENL--RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHh--CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000 1111 1223344445554445
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK--AFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
.+++..-++.... .-| ..|..|+.-|.+..+.+.|..+.++.. +..+..|..-+..+.+++.+.+.+.++..+++
T Consensus 476 lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 5554443333321 111 457788888888888888888887774 22344556668888888888888888888888
Q ss_pred HHhhh
Q 006632 518 KIKNK 522 (637)
Q Consensus 518 ~~~~~ 522 (637)
.+.+.
T Consensus 553 e~ks~ 557 (1088)
T KOG4318|consen 553 EDKSS 557 (1088)
T ss_pred hhhHH
Confidence 87653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-10 Score=114.35 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006632 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+..+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-...+.....++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555566666666666666666666665555 5555555544445555666666555555554443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 006632 209 VKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
.|...+|..|..+|...|++..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 2455556666666666665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=99.46 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
|-.--+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+-.+++.|+.++.+-.+.- +-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 3344467999999999999999999988776 4667888899999999999999999999988762 445545566778
Q ss_pred HHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+...++.+++.++++...+.. +.++....++...|.-.++++.|+..+++++..|+. ++..|+.+.-.|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998865 357777888888899999999999999999999864 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 407 AEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++.-|.+.....-.|+ ..+|-.+.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999876543344 457888998889999999999999998876532 5668999988889999999999999988
Q ss_pred HHCCCCCC
Q 006632 485 KAFGVHPQ 492 (637)
Q Consensus 485 ~~~g~~p~ 492 (637)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 76 5555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-07 Score=85.74 Aligned_cols=305 Identities=10% Similarity=0.013 Sum_probs=215.3
Q ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhH
Q 006632 211 PNLRTYNVLVRAWC--NEKNITEAWNVMHKMAAS-GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTC 286 (637)
Q Consensus 211 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 286 (637)
|...+...-+.+++ -.++-..|...+-.+... -++-|+.....+..++...|+.++|+..|++....+ |+ ....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhH
Confidence 33333333344433 334444444444444332 245577888889999999999999999999886542 32 2222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006632 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (637)
....-.+.+.|+.+....+...+.... .-....|-.-+...-..+++..|..+-+..++... .+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhc
Confidence 223344567788888777777775432 12233344344444556777788877777776542 3455555556677889
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHH
Q 006632 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII-SGWCS-DGSMDRAIE 444 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~ 444 (637)
+++++|.-.|+...... +-+..+|.-|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..|.- ..--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999988763 457899999999999999999998888876664 355667766664 33332 223577888
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 445 VFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 445 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
++++... +.|+.. ..+.+...|...|+.++++.++++... ..||......+++.+...+.+.+|...+..+....
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8888876 457765 677788899999999999999999876 77899999999999999999999999999998877
Q ss_pred cc
Q 006632 524 RT 525 (637)
Q Consensus 524 ~~ 525 (637)
|.
T Consensus 502 P~ 503 (564)
T KOG1174|consen 502 PK 503 (564)
T ss_pred cc
Confidence 64
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-07 Score=86.09 Aligned_cols=310 Identities=11% Similarity=0.096 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 006632 173 LTPTTSTYNTLIKGYGI--AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV-V 249 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~ 249 (637)
.+|........+.++++ .++...|...+-.+.....++.|+.....+...+...|+.++|+..|++.... .|+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 33343334444555443 45666666666655555557788999999999999999999999999998764 3332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
....-.-.+.+.|+.+.-..+...+.... +-....|-.-+......++++.|+.+-.+.++.. +.+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 22233344567888888888777775432 1233344444556667889999999999988764 445556666667788
Q ss_pred HcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc-CCHHHH
Q 006632 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA-KGYVRE-QEPEKA 407 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~A 407 (637)
+.++.++|.-.|+..+... +.+..+|..|+..|...|++.+|..+-+...+. ++.+..+.+.+. ..+.-. .--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8999999999999988764 357899999999999999999999888876664 345667776663 344332 234789
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 408 EELLMTMIESGFHPN-VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+++++..+. .|+ ....+.+...|...|..++++.++++... ..||....+.|...+...+.+++|.+.|.....
T Consensus 424 Kkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 424 KKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999988775 455 45667778889999999999999999887 468999999999999999999999999998876
Q ss_pred CCCCCCHH
Q 006632 487 FGVHPQKS 494 (637)
Q Consensus 487 ~g~~p~~~ 494 (637)
+.|...
T Consensus 500 --~dP~~~ 505 (564)
T KOG1174|consen 500 --QDPKSK 505 (564)
T ss_pred --cCccch
Confidence 666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=103.30 Aligned_cols=99 Identities=26% Similarity=0.332 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCC-CC
Q 006632 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH-----G-VSPN-LKTFETLMWGYSEARQPWRAEEILQIMK----AFGV-HP 491 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~-~p 491 (637)
.+++.|...|...|++++|.++|++++.. | ..+. ...++.|...|.+.++..+|.++|.+.. ..|. .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 35566666666666666666666665431 1 1111 2356666777777777777777766542 2232 23
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 492 QK-STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 492 ~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+. .+|..|..+|.+.|++++|+++.+.+...
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33 36778888888888888888888777643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-07 Score=88.22 Aligned_cols=418 Identities=12% Similarity=0.083 Sum_probs=224.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcC
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS--ESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g 156 (637)
++.+.++|++++|.+...+++..+ +.+...+..-+-++.+.+.++.|+.+.+.-.... .-+... +=.+|+ +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHHcc
Confidence 577788999999999999999854 5577888888889999999999996655322100 111111 234554 678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006632 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
..++|+..++.... .+..+...-...+.+.|++++|+++|..+.+.+.-.-+...-..++.+-... .+- +.
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LL 164 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HH
Confidence 99999999883322 2444666677788899999999999999977652111222222222221110 111 12
Q ss_pred HHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCCh-------hhHHHHHHHHHhcCCH
Q 006632 237 HKMAASGMKPDVVTYN---TIATAYAQNGEADQAEEVIVEMEHNG-------VQPNG-------RTCGIIISGYCKEGKI 299 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~ 299 (637)
+... ..| ..+|. .....+...|++.+|+++++...+.+ -..+. ..-..|.-.+-..|+.
T Consensus 165 q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 QSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred Hhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2221 222 22332 24445677899999999888773211 00001 1112344456678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHhh--------------HHHHHHHH-----------------
Q 006632 300 KEALRFARTMKEYGVHPNLVIF----NLLIKGFVEIMDRDG--------------VDEVLALM----------------- 344 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~--------------a~~~~~~~----------------- 344 (637)
++|..++...++.. ++|.... |.++.. ....++-+ +......+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888765 3443222 222211 11000000 00000000
Q ss_pred ------------hhCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006632 345 ------------KEFRVNPDVITYSTIMNAWST--AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 345 ------------~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
...........+..++..+.+ ......+..++...-+....-...+.-.++......|+++.|.++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 000001112222333322221 113445555555554432222244555556666677777777777
Q ss_pred HH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH----HHHHHHHHHhcCChhH
Q 006632 411 LM--------TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKT----FETLMWGYSEARQPWR 476 (637)
Q Consensus 411 ~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~----~~~l~~~~~~~g~~~~ 476 (637)
+. .+.+.+..| .+...+...+.+.++.+.|..++.+.... .-.+.... +.-+...=.+.|.-++
T Consensus 399 l~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 77 444433333 33444555566666666666666665431 01112222 2222333344677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 477 AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|..+++++.+.. .+|.....+++.+|++. +.+.|+.+-.+++
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 777777776532 34566677777777665 5666666665553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-09 Score=104.84 Aligned_cols=238 Identities=20% Similarity=0.212 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-C
Q 006632 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHN-----GV-QPNGR-TCGIIISGYCKEGKIKEALRFARTMKEY-----G-V 314 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~ 314 (637)
..+...|...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666888999999999999999887653 21 12332 2344778899999999999999998643 2 1
Q ss_pred CC-CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---C
Q 006632 315 HP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-----RV-NPDV-ITYSTIMNAWSTAGFMDKCKEIFDDMGKA---G 383 (637)
Q Consensus 315 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 383 (637)
.| -..+++.|..+|.+.|++++|...++...+. +. .+.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2346777888899999999999998876432 11 1122 23667778899999999999999986542 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 006632 384 IKPD----AHAYSILAKGYVREQEPEKAEELLMTMIES-----G--FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE- 451 (637)
Q Consensus 384 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 451 (637)
+.++ ..+++.|...|.+.|++++|.+++++++.. + ..-.-..++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467899999999999999999999998753 1 112245678889999999999999999988653
Q ss_pred ---CCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 452 ---HGV-SPNLK-TFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 452 ---~~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|+ .|+.. +|..|..+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 23443 79999999999999999999988876
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-08 Score=98.61 Aligned_cols=293 Identities=16% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHc
Q 006632 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQN 261 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~ 261 (637)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |+...|. .+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 345556777777777777665443 33334455556667777777777777777777764 3444443 333333111
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006632 262 -----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI-KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 262 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
.+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs------------------- 144 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS------------------- 144 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-------------------
Confidence 23455556666554432 2222222221112111122 22333344444444332
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--------------CCCCCHH--HHHHHHHHHH
Q 006632 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--------------GIKPDAH--AYSILAKGYV 399 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~ 399 (637)
+|+.|-..|......+-...++...... .-+|... ++.-+...|-
T Consensus 145 -------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 145 -------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred -------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 2222222222222222222222222110 0123332 2344455666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006632 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
..|++++|++++++.++.. |..+..|..-...+-+.|++.+|.+.++.+...+.. |...-+-.+..+.++|++++|.+
T Consensus 206 ~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777777777653 333556666677777777777777777777765443 55555555666677777777777
Q ss_pred HHHHHHHCCCCCCHH------H--HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006632 480 ILQIMKAFGVHPQKS------T--FLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~------~--~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
.+....+.+..|... . ....+.+|.|.|++..|.+.+..+..
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 776665444333221 1 12445677777777777777776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-11 Score=80.16 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777776677777777777776664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-06 Score=89.15 Aligned_cols=401 Identities=14% Similarity=0.107 Sum_probs=228.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 006632 137 GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY 216 (637)
Q Consensus 137 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 216 (637)
.+..|..+|..|.-+...+|+++.+.+.|++....-+. ....|+.+...|...|.-..|+.+++.-.....-++|...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567778888888888888888888888887654322 55678888888888888888888887765432123333333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCC
Q 006632 217 NVLVRAWC-NEKNITEAWNVMHKMAAS--GM--KPDVVTYNTIATAYAQN-----------GEADQAEEVIVEMEHNGVQ 280 (637)
Q Consensus 217 ~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 280 (637)
...-..|. +.+.+++++.+-.++... +. ...+..|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 33333343 456777777776666551 11 11234444444444322 123466677777766544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 006632 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 360 (637)
.|..+.-.+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-. .|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 233444445556777888888888888888775567788888888888888888888888776554311 1111111111
Q ss_pred HHHHHcCChhHHHHHHHHHHHC---------------------CC-------CCCHHHHHHHHHHHH---HcCCHHHHHH
Q 006632 361 NAWSTAGFMDKCKEIFDDMGKA---------------------GI-------KPDAHAYSILAKGYV---REQEPEKAEE 409 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~---~~g~~~~A~~ 409 (637)
..-...++.+++......+... |. .....++..+..... +.-..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1112234444443333332210 00 000111111111111 00000111
Q ss_pred HHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006632 410 LLMTMIESGFH--PN------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 410 ~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
+...... |+ ...|......+...++.++|...+.++.... +-....|.-....+...|...||.+.|
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111 22 2245555666778888888888887776642 123445666666777788888898888
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH--HHHHHhhhhccc-----------cccccccchHHHHHHHHhhhc
Q 006632 482 QIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR--ILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 482 ~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~ 547 (637)
..... +.|+.. ...+++.++.+.|+..-|.. ++..+....|.+ ...|+.+.|...+..++++++
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 77765 667644 77788888888887666665 666665554432 234555555555555555554
Q ss_pred cC
Q 006632 548 TT 549 (637)
Q Consensus 548 ~~ 549 (637)
.+
T Consensus 786 S~ 787 (799)
T KOG4162|consen 786 SN 787 (799)
T ss_pred CC
Confidence 43
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-07 Score=96.52 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006632 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++..+...|...|++++|++++++.+++. +-.+..|..-...+-+.|++.+|.+.++....... .|..+-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 33555667777888888888888877763 22355777777778888888888888888777653 46666667777777
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 365 TAGFMDKCKEIFDDMGKAGIKPDAH------AY--SILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.|++++|.+++....+.+..|... .| .....+|.+.|++..|++-|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888776655333211 12 3446677888888888877776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-08 Score=95.78 Aligned_cols=218 Identities=11% Similarity=0.001 Sum_probs=140.1
Q ss_pred CChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 86 GKPQEAQAIFNNLIEGGH-KP--SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 162 (637)
+..+.++..+.+++.... .| ....|..+...+...|+++.|...|.+.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455667777777765321 11 23457777777888888888888888888765 566788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
..|++..+..+. +..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888876543 56677778888888888888888888887754 33222222222334567788888888665433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GV---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
. .++...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+..
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222222 222 2334555443 244443321 11 0123467777888888888888888888887664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-08 Score=84.92 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006632 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEES 196 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 196 (637)
|...|++..|...+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.....+. +..+.|.....+|..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHH
Confidence 333334444444333333332 222333333333333444444444444433333221 223333333333344444444
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 197 VKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 197 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
...|++.........-..+|..+.-+..+.|+.+.|...|++.++
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 444443333222222223333333333344444444444444333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=78.55 Aligned_cols=49 Identities=33% Similarity=0.695 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-07 Score=87.48 Aligned_cols=393 Identities=15% Similarity=0.130 Sum_probs=226.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 157 (637)
-++....|+++.|+.+|-+.+..+ ++|.+.|+.-..+|+..|+++.|+.--.+..+. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999998865 458899999999999999999998876666664 565 4678999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH------HHHHhcC--CCCCCHHHHHHHHHHHHhc---
Q 006632 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL------DLMSREG--NVKPNLRTYNVLVRAWCNE--- 226 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~~--~~~~~~~~~~~li~~~~~~--- 226 (637)
+++|+..|.+-.+..+. +...++.+..++.... .+.+.| ..+.... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999998887543 5667777887772110 011111 1110000 0000011222222222110
Q ss_pred -------CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHH
Q 006632 227 -------KNITEAWNVMHKM-----AASG-------MKP------------D----------VVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 227 -------g~~~~A~~~~~~~-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~ 265 (637)
.++..+...+... ...| ..| | ..-...+.+...+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0011111111000 0000 011 0 011234555555566666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHhhHH
Q 006632 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL-------LIKGFVEIMDRDGVD 338 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~ 338 (637)
.|++-+....... .+..-++....+|...|.+.+.........+.| .....-++. +..+|.+.++++.+.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 6666666665543 344445555566666666666555555544433 111111221 223444555566666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006632 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
..|.........|+.. .+....+++........-.+ |.. .-...-..-+.+.|++..|...|.++++.
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 6666544433222211 12223333333333322221 211 11122255567888999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
. |.|...|.....+|.+.|.+..|++--+..++. .|+.. .|..=+.++....++++|.+.|++..+ ..|+..-+
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 6 778888888888999999999998888888775 34433 566666677777788888888888776 44554433
Q ss_pred H
Q 006632 497 L 497 (637)
Q Consensus 497 ~ 497 (637)
.
T Consensus 463 ~ 463 (539)
T KOG0548|consen 463 I 463 (539)
T ss_pred H
Confidence 3
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-07 Score=90.31 Aligned_cols=149 Identities=12% Similarity=-0.008 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006632 122 RFNSIHSIMSQVEENG-MDPD--SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 122 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555432 1111 344666666777777777777777777766543 56677777777777777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006632 199 LLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 199 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.|++..+.. |.+..+|..+...+...|++++|++.|+...+.. |+..........+...+++++|...|.+..
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777643 3346667777777777777777777777776643 332211222222344566777777775544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=82.64 Aligned_cols=200 Identities=14% Similarity=0.037 Sum_probs=160.1
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006632 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...+.-.|.+.|+...|..-++..++.. +.+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445667888888888888888888876 3467788888889999999999999999988864 4467788888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006632 401 EQEPEKAEELLMTMIESGF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.|++++|...|++...... .--..+|..++.+..+.|+.+.|...|++.++.... ...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999887522 223468888888889999999999999999886432 45577888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+++.....+. ++.+.....+..-.+.|+.+.|-++=.++....|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8888765444 8888888888888899998888887776655544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-07 Score=83.04 Aligned_cols=411 Identities=10% Similarity=0.036 Sum_probs=267.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
+.-+..+.++..|+.+++--...+-.-...+-.-+..++...|++++|...|..+.... .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 67778889999999999877643322222222335567788999999999999887765 67778888888777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
.+|..+-.+..+ ++-....|.+.-.+.|+-++-..+-..+.. +...-.+|.+.....-.+.+|++++.+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988777643 455566667777788887777766666543 335556677777777789999999999
Q ss_pred HHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 239 MAASGMKPDVVTYN-TIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 239 ~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
.+.. .|.-...| .+.-+|.+..-++-+.++++--++. ++.+....|..+....+.=+-..|.+-...+.+.+-..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 9875 34444444 3555778888889898888877665 22334455554444444322233443344444332111
Q ss_pred HHHHHHHHHHHHHc-----CCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 318 LVIFNLLIKGFVEI-----MDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392 (637)
Q Consensus 318 ~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 392 (637)
...+.-+++. ..-+.|.+++--+.+.- | .....|+-.|.+.+++++|..+.+.+.-. .|-.....
T Consensus 253 ----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--P--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--P--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ----chhHHHHHHcCeEEEeCCccHHHhchHHHhhC--h--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1122222332 33467777776655432 2 23344566688999999999988776422 23222222
Q ss_pred HHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 393 ILAKGYVREQ-------EPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.++ .+..| .+.-|.+.|+-.-+++..-|. .--.++.+++.-..++++.+-++..+...-. -|...-..+
T Consensus 323 gvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~ 399 (557)
T KOG3785|consen 323 GVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNL 399 (557)
T ss_pred HHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHH
Confidence 222 23333 345566666655544433332 2345677777777789999999988876533 344444468
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 006632 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..+....|.+.+|.++|-......++ +..+|. .+...+.+.++.+-|..++-++
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88999999999999999776543344 344555 5667889999999999998776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-07 Score=97.27 Aligned_cols=476 Identities=10% Similarity=-0.035 Sum_probs=280.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFW 166 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 166 (637)
+...|+..|-+..+..+ -=...|..|...|....+...|...|+++.+.+ +.|...+......|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36677777766665321 134578888888877778888888888888776 6677788888888888888888888744
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006632 167 KMKESGLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK 245 (637)
Q Consensus 167 ~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 245 (637)
...+.... .-...|.-..-.|...++...|+.-|+...+.. |.|...|..++.+|...|++..|+++|.+.... +
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33332111 112234445556777888888888888887764 567788888888888888888888888887664 3
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCH-------HHHHHHHHHHHH
Q 006632 246 PDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNG------VQPNGRTCGIIISGYCKEGKI-------KEALRFARTMKE 311 (637)
Q Consensus 246 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~~~~ 311 (637)
|+. ..-.-....-+..|.+.+|+..+..+.... ...-..++-.+...+.-.|-. +++++.|.-...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 222223334556788888888777664321 001122222222222223322 333333333332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHh--h----HHH-HHHHHhhCCC--------------------CCCHHHHHHHHHHHH
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRD--G----VDE-VLALMKEFRV--------------------NPDVITYSTIMNAWS 364 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~--~----a~~-~~~~~~~~~~--------------------~~~~~~~~~l~~~~~ 364 (637)
+....+...|-.+-++|.-.-..+ - ... ++.++...+. ..+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 222223333333333221110000 0 000 1111111111 111223333333222
Q ss_pred H----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 365 T----A----GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 365 ~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
+ . .+...|+..+...++.. ..+...|+.|.-. ...|++.-|...|-+-.... +....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 2 1 12235666666665542 3356667766654 55678888888887766653 66788899999889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006632 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK----AFGVHPQKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~g~~~eA 512 (637)
.+++.|...|.+.....+ .|...|..........|+.-++..+|..-. ..|--|+...|.|....-...|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 999999999999887543 266678777777777888888888886621 345556666777777777788888777
Q ss_pred HHHHHHHhhh----------hcc-----------ccccccccchHHHHHHHHh---hhccCCCCC-CcccccccccccCC
Q 006632 513 KRILSKIKNK----------ERT-----------NEMEAEEDIPVESLERLYH---KEATTASYP-NLLQIPNVVSSDQK 567 (637)
Q Consensus 513 ~~~~~~~~~~----------~~~-----------~~~~~~~~~a~~~~e~~~~---~~~~~~~y~-~~~~L~~~y~~~g~ 567 (637)
+.-.+++... .|. .+......-+...+.+++. ..-+-..|. +--.++.+|.+.|.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 7666665421 111 0112233344445555543 333444443 33356668888888
Q ss_pred Cchhh
Q 006632 568 GSAAA 572 (637)
Q Consensus 568 ~~~a~ 572 (637)
++.|.
T Consensus 1023 fe~A~ 1027 (1238)
T KOG1127|consen 1023 FESAK 1027 (1238)
T ss_pred hhhHh
Confidence 88554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-07 Score=92.80 Aligned_cols=417 Identities=12% Similarity=0.088 Sum_probs=238.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTL----LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
|..+.+.+.++|-.+.|++.|..+.. ++...+.-+.+ +..+...-.++.+.+.++.|+..++..|..+...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D--IKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH--HHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66778888899999999988877653 22221111111 2233344466777888888887777777777666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH------------h--
Q 006632 151 AFSESGNMEEAMDTFWKMKES-----------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS------------R-- 205 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------~-- 205 (637)
-|...-..+.-+++|+..... ++.-|+.+....|.+-++.|++.+..++-++-. +
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 666665566666666665432 234456666667777778887777666543310 0
Q ss_pred -cC-----------CCCCCHHHH----------------------------------------------------HHHHH
Q 006632 206 -EG-----------NVKPNLRTY----------------------------------------------------NVLVR 221 (637)
Q Consensus 206 -~~-----------~~~~~~~~~----------------------------------------------------~~li~ 221 (637)
.+ ++.+|.+.| .-|..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 00 011122211 00111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHH---HHHH------HHhC-----------C--
Q 006632 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE-ADQAEE---VIVE------MEHN-----------G-- 278 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~------~~~~-----------~-- 278 (637)
-.-+.+++.--...++.....|.. |..++|+|...|...++ ++.-++ .|+. ..+. |
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 112333444444556666666643 78888888888776543 221111 1111 0111 1
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHH-----------HHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhhHHH
Q 006632 279 ------VQPNGRTCGIIISGYCKEGKIKEA-----------LRFARTMKEYGV--HPNLVIFNLLIKGFVEIMDRDGVDE 339 (637)
Q Consensus 279 ------~~~~~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (637)
+......|-...+.+.+..+.+-- .++.++....++ ..|+...+..+.++...+-..+.++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 001112233334444444443322 234556655443 2366667777888888888888888
Q ss_pred HHHHHhhCCC--CCCHHHHHHHHH---------------------------HHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006632 340 VLALMKEFRV--NPDVITYSTIMN---------------------------AWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 340 ~~~~~~~~~~--~~~~~~~~~l~~---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+++.+.-.+. .-+...-+.|+- .+...+-+++|..+|++. ..+...
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A 1080 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSA 1080 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHH
Confidence 8887643211 111112222221 222333344555555443 123333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+.|+. .-+.++.|.+.-++. ..+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++.++.+
T Consensus 1081 ~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1081 IQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred HHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 333332 234455555544443 24678999999999999999998877543 377789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 471 ARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.|.+++-.+++...++..-+|..+ ..++-+|.+.+++.|-++++
T Consensus 1146 ~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred cCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 999999999888777766666654 45777889999998888776
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-07 Score=82.30 Aligned_cols=291 Identities=12% Similarity=0.075 Sum_probs=185.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA-VINAFS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 153 (637)
+++++..+++..++.+|++++..-.++. +.+....+.+..+|-...++..|-..|+++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556778889999999999998887753 337777888889999999999999999998764 344433322 234455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLI--KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.+.+|+++...|... ++...-..-+ ....+.+++..+..++++....+ +..+.+...-...+.|++++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 778999999999888653 2222211112 22335788899999999887543 55566666666779999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------------Chhh-------------
Q 006632 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-------------NGRT------------- 285 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~------------- 285 (637)
|.+-|+...+.+---....|+ +.-+..+.|+++.|++...++++.|++. |+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999998765333456666 4445667899999999999998876532 1110
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006632 286 --CGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 286 --~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (637)
+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.-. .+++.+..+-+..+...++ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 11112234455666666666666531 112335555544432211 2333444444444444432 345566666666
Q ss_pred HHHcCChhHHHHHHHH
Q 006632 363 WSTAGFMDKCKEIFDD 378 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~ 378 (637)
|++..-++.|-.++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 6666666666665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-06 Score=85.11 Aligned_cols=381 Identities=15% Similarity=0.080 Sum_probs=244.3
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
..++|.+.|..-..+|+..|++++|++=-.+-.+ ..|+ +..|+....++...|++++|+..|.+-++.. +.+...+
T Consensus 31 l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~ 107 (539)
T KOG0548|consen 31 LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLK 107 (539)
T ss_pred cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHH
Confidence 3455889999999999999999999987776665 3565 5689999999999999999999999998875 6677788
Q ss_pred HHHHHHHHhcCCHHHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHHh----------cCChHHHHHHHHHH---
Q 006632 146 NAVINAFSESGNMEEAMDTF------WKMKES---GLTPTTSTYNTLIKGYGI----------AGKPEESVKLLDLM--- 203 (637)
Q Consensus 146 ~~ll~~~~~~g~~~~A~~~~------~~m~~~---~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~m--- 203 (637)
+-|..++.... .+.+.| ..+... ........|..++..+-+ -.++..|.-.+...
T Consensus 108 ~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~ 184 (539)
T KOG0548|consen 108 TGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL 184 (539)
T ss_pred HhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc
Confidence 88888872211 111111 111100 000011122333322211 11111221111110
Q ss_pred --HhcC------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 204 --SREG------NVKP------------N----------LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 204 --~~~~------~~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
...+ ...| | ..-...+..+..+..+++.|++-+....... -+..-++.
T Consensus 185 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n 262 (539)
T KOG0548|consen 185 LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNN 262 (539)
T ss_pred cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHH
Confidence 0000 0011 0 0123557777778889999999999888764 45556667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGR-------TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
...+|...|.+......-+...+.|.. ... .+..+..+|.+.++++.++..|.+.....-.|+..
T Consensus 263 ~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l------- 334 (539)
T KOG0548|consen 263 IAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL------- 334 (539)
T ss_pred HHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------
Confidence 777888888888777766665554431 111 22234457777888999999999876543233221
Q ss_pred HHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+....+++........-.++.. ..-...-...+.+.|++..|...|.++++.. +.|...|.....+|.+.|.+..
T Consensus 335 --s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 335 --SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred --HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHH
Confidence 12222344444433333322221 1112223566789999999999999999986 6689999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 407 AEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
|+.-.+..++.+ ++....|..=..++....+++.|++.|++.++.+ |+..-+..-+.-|..
T Consensus 411 aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 411 ALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999988874 5566677777777778889999999999999854 666555555555555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-06 Score=87.04 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006632 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+.++...|+.+.|..++..+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 44445556666666666655543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-06 Score=86.81 Aligned_cols=199 Identities=10% Similarity=-0.023 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVT-YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
+..|..+...+...|+.+.+.+.+........ .++... .......+...|+++.|...+++..+.. |.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44455566666667777776666666554211 112211 1112233455677777777777776653 444434332 1
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006632 150 NAFS----ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 150 ~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+. ..+....+.+.++..... .+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 1222 233444444444431111 11122333445556667777777777777776653 4445566666677777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006632 226 EKNITEAWNVMHKMAASGM-KPDV--VTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777776665321 1121 234456666667777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-06 Score=81.38 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=136.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006632 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
++-+...+++++|.....+++..+ +.|...+..=+-++.+.+.+++|+.+.+.-... ..+.+-+.--..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455567789999999999999876 666777777777888999999999665543321 11111111122333478999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
++|+..++-.. +.|..+...-...+.+.|++++|+.+|+.+.+.+.+- +...-..++..- .-..+. +.+
T Consensus 96 Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHH
Confidence 99999998332 2345567777788899999999999999998765321 111112222111 111111 122
Q ss_pred HHHhCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC--CH-----HHHHHHHHHHHHcCCHh
Q 006632 273 EMEHNGVQPNGRTCG---IIISGYCKEGKIKEALRFARTMKEYG-------VHP--NL-----VIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~--~~-----~~~~~ll~~~~~~~~~~ 335 (637)
. ....| ..+|. .....+...|++.+|++++....+.+ -.- +. ..-..+.-.+...|+..
T Consensus 166 ~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 166 S---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred h---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 2 11122 22333 34556778999999999999883221 011 11 12233445567889999
Q ss_pred hHHHHHHHHhhCCC
Q 006632 336 GVDEVLALMKEFRV 349 (637)
Q Consensus 336 ~a~~~~~~~~~~~~ 349 (637)
+|..++...++...
T Consensus 242 ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-06 Score=88.50 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 006632 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMD 370 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 370 (637)
.+-.....+.+|+.+++.+.... ....-|..+.+.|+..|+++.|.++|.... .++..|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34444555666666665554431 122234455556666666666666554321 2334455566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+|.++-.+.. |.......|-+-..-+-++|++.+|.+++-.+. .|+. .|..|-++|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6665554432 222333444444444455666666665554432 3332 2445555565555555544321
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 451 EHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
- ..-..|...+..-+...|+.+.|...|-+.. -|...+++|...+.+++|.++.
T Consensus 878 ~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 G---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 1 0112344455555555666665555543321 1334445555555555555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-05 Score=71.71 Aligned_cols=318 Identities=12% Similarity=0.103 Sum_probs=184.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF-FNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 148 (637)
.++.-.-.|.+.+..+|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.-+.+.++. .||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344445567788888899999999999887631 223334444467788888888888888888774 666432 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTT--STY------------NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
...+.+.|.+++|..=|+.+.+..+.... ..+ ...+..+...|+...|+.....+.+.. +.|..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDAS 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhH
Confidence 45677889999999999988876432111 111 112223344555566666666555542 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006632 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC 294 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 294 (637)
.+..-..+|...|.+..|+.-++...+.. .-+..++.-+...+...|+.+.++...++.++. .||...+- .
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf------~ 261 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF------P 261 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH------H
Confidence 55555556666666666555555444332 123333444455555556655555555555543 23322111 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCChhH
Q 006632 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT---YSTIMNAWSTAGFMDK 371 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 371 (637)
--..+.+..+.+..|. .....+++.++.+..+...+..+....+. +..+-.++..-+++.+
T Consensus 262 ~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 1111122222222221 12344555666666666655543322333 3344456667788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006632 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
|++.-.+++... +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 326 AiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888887652 3347788888888888888888888888888753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-05 Score=74.32 Aligned_cols=316 Identities=10% Similarity=0.045 Sum_probs=201.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHH
Q 006632 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT-YNV 218 (637)
Q Consensus 140 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~ 218 (637)
.++.-..-+...+...|++.+|+.-|...++.++. +-.++..-...|...|+..-|+.-+.+..+. +||-.. -..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHH
Confidence 45556667778888888888888888888875321 2223333456788888888888888888774 566432 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006632 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
-...+.+.|.+++|..-|+..++.. |+..+ ...++.+.-..++- ......+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCc
Confidence 3455677888888888888887653 33211 11122211111111 112233445566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006632 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD 378 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 378 (637)
...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+... .+..++--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888887764 55777777788888888888888887777766543 3455555666677788888888888888
Q ss_pred HHHCCCCCCHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 006632 379 MGKAGIKPDAHAYSILA-------------KGYVREQEPEKAEELLMTMIESGFHPNVV---IFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 379 ~~~~~~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 442 (637)
.++. .||....-..- ......++|.++++-.+...+.......+ .+..+-.++...|++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 8875 45543322211 11234566667777666666542111122 333455566677777888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 443 IEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
++.-.+.++. .|| ..++.--..+|.-...+++|+.-|+...+
T Consensus 327 iqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 327 IQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 8777777763 344 55777777777777777778777777766
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-08 Score=91.71 Aligned_cols=248 Identities=13% Similarity=0.099 Sum_probs=120.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006632 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEA 302 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 302 (637)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666554443 111111112333444566666666655433 2222222 34444444443333322333444
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006632 303 LRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+.-+++....... .+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4433333222211 12222222223344456666665555321 3455555666667777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 382 AGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
. ..| .+...|+.++.. .+.+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++++..+.+.. |
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 3 223 233333333322 23567777777776554 3566677777777777777777777777776654322 4
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 006632 458 LKTFETLMWGYSEARQP-WRAEEILQIMKA 486 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 486 (637)
+.++..++.+..+.|+. +.+.++++++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55666667666777766 445556666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-05 Score=72.88 Aligned_cols=136 Identities=11% Similarity=0.147 Sum_probs=94.3
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.|+.+|+.||+-+..+ ..+++++.++++... .+-.+..|..-|..-.+.++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 4567899999999988766 999999999999863 3446778888999999999999999999998875 34567777
Q ss_pred HHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHhc
Q 006632 147 AVINAFSE-SGNMEE----AMDTFWKM-KESGLTPT-TSTYNTLIKG---------YGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 147 ~ll~~~~~-~g~~~~----A~~~~~~m-~~~~~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 206 (637)
.-+.---+ .|+... ..+.|+-. .+.|+.+- -..|+..+.. |..+.+++..++++.++...
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 66653332 233222 23334433 33443332 3346665554 34455778888888888753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-05 Score=91.27 Aligned_cols=265 Identities=13% Similarity=0.068 Sum_probs=111.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHH
Q 006632 222 AWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----GV-QPNGRTCGIIISG 292 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~ 292 (637)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .....+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344556666666666555442111111 12333444455566666666665554421 10 0011223344445
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC--CCC--CHHHHHHHHH
Q 006632 293 YCKEGKIKEALRFARTMKEY----GVH--P-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR--VNP--DVITYSTIMN 361 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 361 (637)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 55566666666655554321 110 0 11222333344444566666655555443210 001 1222333344
Q ss_pred HHHHcCChhHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 006632 362 AWSTAGFMDKCKEIFDDMGKAG--IKPDAH--AY--SILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISG 432 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~ 432 (637)
.+...|+.+.|...+....... ...... .. ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4555566666655555543210 000000 00 00112233455555555555443321100000 112334444
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 433 WCSDGSMDRAIEVFDKMCEH----GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|+.++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55556666666665555431 221111 2344445555556666666666555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-06 Score=83.77 Aligned_cols=205 Identities=17% Similarity=0.187 Sum_probs=126.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
+.+-.....+.+|+.+++.+.... .-..-|-.+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455667777887777776542 233445666777888888888888776542 244556778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..|.++-++.. |.......|..-..-+-.+|++.+|.+++-... .|+. .+.+|.+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 88877766553 333344556666666777788888777764431 3443 345677778878777777765
Q ss_pred hhhhccc---------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchh
Q 006632 520 KNKERTN---------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECS 590 (637)
Q Consensus 520 ~~~~~~~---------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~s 590 (637)
.-...|. +..++++.|+.. .++...-.+ --|+|-..+.|++|-++-+.--..+..|...+-
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~---flea~d~ka-------avnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEH---FLEAGDFKA-------AVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHH---HHhhhhHHH-------HHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 3221110 112333222211 122111111 237899999999999988887777888888888
Q ss_pred hh-hcch
Q 006632 591 WF-ATTS 596 (637)
Q Consensus 591 wi-~~~~ 596 (637)
|- .++|
T Consensus 947 waksigg 953 (1636)
T KOG3616|consen 947 WAKSIGG 953 (1636)
T ss_pred HHHhhCc
Confidence 85 3344
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-08 Score=92.41 Aligned_cols=250 Identities=16% Similarity=0.168 Sum_probs=165.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhH
Q 006632 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGV 337 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 337 (637)
+.-.|++..++.-.+ ......+.+......+.++|...|+++.++. ++.... .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444688888876555 2222222234455567788899998776543 333333 56666665555544443455555
Q ss_pred HHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 338 DEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
..-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554433322 23333334445667789999999887642 4677778889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH--hc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006632 417 SGFHPNVVIFTTIISGWC--SD--GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~--~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
. ..|. +...+..++. .. ..+++|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++... ..|+
T Consensus 160 ~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~ 233 (290)
T PF04733_consen 160 I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPN 233 (290)
T ss_dssp C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CC
T ss_pred c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccC
Confidence 5 3443 3333444333 23 3699999999998764 557889999999999999999999999998764 3444
Q ss_pred -HHHHHHHHHHHHHcCCH-HHHHHHHHHHhhhhc
Q 006632 493 -KSTFLLLAEARRATGLT-KEAKRILSKIKNKER 524 (637)
Q Consensus 493 -~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~~ 524 (637)
..+...++-+....|+. +.+.+++.++....|
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 55788888888889988 778899999876655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-07 Score=88.87 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=121.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 159 (637)
..+.++|++.+|.-.|+..+..+ +-+..+|..|....+..++-..|+..+++.++.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567777777777777776642 3366677777777777777777777777777765 555666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 160 EAMDTFWKMKESGLTPTTSTYNTLIK-----------GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+|++.++.-+...++ |..+.. .+.....+....++|-++.......+|......|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 777777766543221 111110 1111112233344444444433223455555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+++|...|+.++... +-|..+||-|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555442 224455555555555555555555555555543 232 3444445555555555555555544
Q ss_pred HH
Q 006632 308 TM 309 (637)
Q Consensus 308 ~~ 309 (637)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 43
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-05 Score=89.92 Aligned_cols=336 Identities=12% Similarity=0.022 Sum_probs=211.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 006632 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM------KPD--VVTYNTIATAY 258 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~~ 258 (637)
....|+++.+...++.+.... ...+..........+...|++++|..++......-- .+. ......+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 445677777777766653211 011222233445556678999999999987754310 111 11222334556
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHH
Q 006632 259 AQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALRFARTMKEYGV---HPN--LVIFNLLIKGFV 329 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~~ 329 (637)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7889999999999987763211221 2345566777889999999999988764210 111 234455667788
Q ss_pred HcCCHhhHHHHHHHHhh----CCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCC--CHHHHHHHHHHH
Q 006632 330 EIMDRDGVDEVLALMKE----FRVN--P-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKP--DAHAYSILAKGY 398 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 398 (637)
..|++++|...+.+... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877543 2211 1 2233445566677789999999999887542 1112 234455566778
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 006632 399 VREQEPEKAEELLMTMIESGF-HPNVVIF-----TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL---KTFETLMWGYS 469 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~ 469 (637)
...|+++.|...+.+...... ......+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 899999999999988754210 1111111 11224455689999999998775542111111 12456677888
Q ss_pred hcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 470 EARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
..|+.++|...+++... .|..++ ..+...+..++.+.|+.++|...+.++....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988753 343333 2356677788999999999999999987653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-05 Score=71.31 Aligned_cols=291 Identities=10% Similarity=0.095 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 006632 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYN-TLIKGYG 188 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~ 188 (637)
+.+++..+.+..++..|++++..-.++. +.+....+.|...|-...++..|-..++++...- |...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4556666667788999999888777765 5577788888899999999999999999998763 3333332 2345566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA--WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
+.+.+..|+++...|... ++...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999888642 222222222222 335778888888888876433 45555556666778999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHH
Q 006632 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP-------------NLV--------IFNLLI 325 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------~~~~ll 325 (637)
|.+-|+...+-+--.....|+.-+ +..+.|+.+.|++...++++.|++. |+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887754323345566544 4557789999999999998876421 211 112222
Q ss_pred -------HHHHHcCCHhhHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 326 -------KGFVEIMDRDGVDEVLALMKE-FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 326 -------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
..+-+.++++.|.+.+..|.- .....|++|...+.-. -..+++-....-+.-+...+. -...+|..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 234466777777777776632 2223455555443322 123445555555555555532 345677777777
Q ss_pred HHHcCCHHHHHHHHHH
Q 006632 398 YVREQEPEKAEELLMT 413 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~ 413 (637)
|+|+.-++.|.+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 8888888877777755
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-05 Score=84.42 Aligned_cols=441 Identities=13% Similarity=-0.008 Sum_probs=276.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006632 122 RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLD 201 (637)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (637)
+...+...|-+..+.. +.-...|..|...|...-+...|.+.|++..+.+.. +...+-.....|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4666777776666653 333567999999999988999999999999987644 77889999999999999999999955
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006632 202 LMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
...+......-...|.-..-.|.+.++...|..-|+...+.. +.|...|..+..+|..+|.+..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 444432111123345555667889999999999999998775 4478899999999999999999999999887653 3
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHHcCCHhh-------HHHHHHHHhhC
Q 006632 282 N-GRTCGIIISGYCKEGKIKEALRFARTMKEYG-----VHP-NLVIFNLLIKGFVEIMDRDG-------VDEVLALMKEF 347 (637)
Q Consensus 282 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~ 347 (637)
+ ...--.....-+..|.+.+|+..+....... ... -..++..+...+.-.|-... +.+.|.-...+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 2222334455677899999998887775431 011 11222222222222222222 22222222222
Q ss_pred CCCCCHHHHHHHHHHHH-----------------------HcCCh---h---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 348 RVNPDVITYSTIMNAWS-----------------------TAGFM---D---KCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 348 ~~~~~~~~~~~l~~~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
....+...|-.+-++|. ..+.. + .+.+.+-.-. ....+...|..|+..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHH
Confidence 21122222222222221 11111 1 0111111111 1122344555555555
Q ss_pred HH----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 399 VR----E----QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 399 ~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+ + .+...|+..+.+.++.. ..+..+|+.|.-. ...|++.-|.-.|-+-..... -+..+|..+.-.|..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEe
Confidence 43 1 23346888888887763 5677888888776 667888888888877766432 256689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc-------------------c----
Q 006632 471 ARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT-------------------N---- 526 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-------------------~---- 526 (637)
..+++.|...|.+.+. +.|+.. -|....-.....|+.-++..+|.---+...+ +
T Consensus 863 n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred cccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 9999999999998876 556543 5666666667778777777777662111100 0
Q ss_pred ---cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhh
Q 006632 527 ---EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKG 576 (637)
Q Consensus 527 ---~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~ 576 (637)
...+...-|..++++.+...|+... +|...+.+..+.+.+.+|.....
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~f--Ay~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCF--AYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhH--HHHHHHhHHHHHHHHHHHHHHHH
Confidence 0112223344567777777777655 45556666677777777766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=86.72 Aligned_cols=247 Identities=9% Similarity=0.073 Sum_probs=111.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006632 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
+.|++.+|.-.|+...... |.+...|-.|......+++-..|+..+++..+.. +-+....-.|.-.|...|.-..|.
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4455555555555544443 3344555555555555555555555555554432 113344444444455555544555
Q ss_pred HHHHHHHhCCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 006632 269 EVIVEMEHNGVQ--------PNGRTCGIIISGYCKEGKIKEALRFARTM-KEYGVHPNLVIFNLLIKGFVEIMDRDGVDE 339 (637)
Q Consensus 269 ~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (637)
..++.-+...++ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 544443322110 00000000 0111111222223333333 223323455555555555555555666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 006632 340 VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHAYSILAKGYVREQEPEKAEELLMTMIES- 417 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 417 (637)
.|+..+... +.|..+||.|...++...+.++|+..|++.++. .|. +.+...|.-.|...|.+++|.+.|-..+..
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 665555543 235555666666666666666666666665554 222 333444555556666666666555543321
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 418 --------GFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 418 --------~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
...++..+|..|=.++.-.++.+-+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 01123345555555555555544333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00017 Score=74.62 Aligned_cols=384 Identities=15% Similarity=0.122 Sum_probs=225.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------CCCCCHHHHHHHHHH
Q 006632 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN---------GMDPDSIFFNAVINA 151 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~ll~~ 151 (637)
.|..-|+.+.|.+-.+-+. +...|..+.+.|.+..+++-|.-.+..|... .-.++ ..-..+.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3556788888877666553 4567899999998888887777666655421 01222 222233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
....|.+++|..+|.+-.+ |..|=+.|-..|.+++|.++-+.--+ +. =..||.....-+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHH
Confidence 4577899999999988876 44566778889999999988764322 11 23456666666666777877
Q ss_pred HHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006632 232 AWNVMHKMA----------ASG---------MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISG 292 (637)
Q Consensus 232 A~~~~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 292 (637)
|++.|++.- ... -..|...|.-........|+.+.|+.+|..... |-+++..
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 777766531 111 122445555556666667888888887766543 4456666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC------C--CCCHHHHHHHHHHHH
Q 006632 293 YCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR------V--NPDVITYSTIMNAWS 364 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~--~~~~~~~~~l~~~~~ 364 (637)
.|-.|+.++|-++-++- .|......+...|...|+..+|...|....... . ..+...+|..+ .+
T Consensus 948 ~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal--~s 1019 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL--MS 1019 (1416)
T ss_pred EeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--hc
Confidence 67778888887776543 356666777888888888888887776643210 0 00111111110 01
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHHC--CCCCCHHHHHHHHHHHH
Q 006632 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT--------MIES--GFHPNVVIFTTIISGWC 434 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li~~~~ 434 (637)
...+.-.|-..|++. |. -..--+..|-+.|.+.+|+++--+ ++.. .-..|+...+.-..-++
T Consensus 1020 ~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 111222233333332 11 112233456777777777665321 2222 22456777777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH----HHHHHHHHHHHHcCCH
Q 006632 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK----STFLLLAEARRATGLT 509 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~----~~~~~l~~~~~~~g~~ 509 (637)
.+.++++|..++-...+ |..-+..|...| +.-..++-+.|. ...-.|+. .....+.+.|.++|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 88888888888766554 223344444333 223333334442 22123332 3566778889999988
Q ss_pred HHHHHHHHHH
Q 006632 510 KEAKRILSKI 519 (637)
Q Consensus 510 ~eA~~~~~~~ 519 (637)
..|-+-|-++
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 8887776665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-05 Score=75.15 Aligned_cols=145 Identities=9% Similarity=0.025 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
++..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44444455555667777777777777632 224455665555555555 4566666666666654 44455565554444
Q ss_pred HhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006632 153 SESGNM--EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 153 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
.+.|.. ++++.+++++.+.++. +..+|+...-++...|+++++++.++++.+.+ +.|..+|+.....+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVI 186 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHH
Confidence 445442 4455555565555433 55556665555556666666666666665543 34455555544443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-05 Score=75.18 Aligned_cols=236 Identities=9% Similarity=0.037 Sum_probs=177.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 006632 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDT 164 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~ 164 (637)
+++.+|...|+.+.. ..+..++|+.++.++++.. +-+..+|+....++...| ++++++..
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 455666666665543 3467788999999998875 556677887777777777 68999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKP--EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
++++.+..++ +..+|+...-.+.+.|+. ++++.+++++.+.. +.|..+|+...-.+...|+++++++.++++++.
T Consensus 95 ~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 95 AEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999987655 666788776666677763 67899999998875 678999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 006632 243 GMKPDVVTYNTIATAYAQN---GEA----DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE----GKIKEALRFARTMKE 311 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~ 311 (637)
+. .|...|+.....+.+. |.. +..+....+++...+ .|...|+.+...+... +...+|...+.+...
T Consensus 172 d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 172 DV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred CC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 64 3667777666655554 222 467777767776643 5788899888888773 445678888888776
Q ss_pred CCCCCCHHHHHHHHHHHHHcC------------------CHhhHHHHHHHHhh
Q 006632 312 YGVHPNLVIFNLLIKGFVEIM------------------DRDGVDEVLALMKE 346 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~------------------~~~~a~~~~~~~~~ 346 (637)
.+ +.+......++..|+... ..+.|.+++..+.+
T Consensus 250 ~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred cc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 54 556778888888887632 23678888888843
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00039 Score=73.59 Aligned_cols=201 Identities=13% Similarity=0.179 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKG 327 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (637)
+..|..+..+-.+.|...+|.+-|-+. .|+..|..+++...+.|.+++-.+++...++..-.|.+ =+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 345555555555555555555544322 24455555555555555555555555554444322222 2344555
Q ss_pred HHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006632 328 FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 407 (637)
|++.++..+..+++ ..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 55555544443332 1244444455555555555555555444332 2344455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006632 408 EELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+.-++. .+..+|..+-.+|...+.+.-| +|....+-....-...|+.-|...|-++|-+.+++.
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5444433 2445555555555544443322 122222222333444555555555655555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-05 Score=86.21 Aligned_cols=207 Identities=11% Similarity=0.046 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh
Q 006632 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-----DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
|.+...|-..+......++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 344667777777788888888888888877653 211 13466677777666777777777887776641 2345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006632 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP-DVITYSTIMNAW 363 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 363 (637)
+|..|...|.+.+.+++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++....+.-++. ......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67777778888888888888888886542 2455677777777777777777777777766543221 223334444445
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
.+.|+.+.++.+|+..+... +.-...|+.++++-.++|+.+.++.+|++++..++.|
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 56777777777777766542 3356677777777777777777777777777666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00026 Score=73.30 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 473 QPWRAEEILQIMKAFGVHPQ----KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
+..+.+.-...|....+-|+ ...|..++..+.+..++..|.+.+..|..+.|.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 44455555566655444443 346888999999999999999999999877553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-06 Score=85.78 Aligned_cols=222 Identities=13% Similarity=0.119 Sum_probs=176.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHH
Q 006632 280 QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 280 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
+|-...-..+...+...|-...|+.+|+++. .|...+..|...|+...|..+..+-.+ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3334445667888999999999999998764 577788889999999999999888877 36899999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
.+......-+++|.++.+..... +-..+.......++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888775432 22223333345789999999999887764 66778999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 440 DRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+.|.+.|..-... .||. ..|+.+..+|.+.|+..+|...+++..+.+.. +...|....-+....|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999998874 4554 58999999999999999999999999887744 344566666677889999999999999
Q ss_pred Hhhhh
Q 006632 519 IKNKE 523 (637)
Q Consensus 519 ~~~~~ 523 (637)
+....
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 86553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-06 Score=83.99 Aligned_cols=219 Identities=10% Similarity=0.033 Sum_probs=176.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 246 PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
|-...-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+..+. +|++..|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33344456778888999999999999876 34677889999999999999999888874 78999999998
Q ss_pred HHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006632 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPE 405 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (637)
+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8887777778888887765332 11122222234789999999999877764 446788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 406 KAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|.+.|....... +.+...||.+-.+|.+.|+-.+|...++++.+.+. -+...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999988763 55678999999999999999999999999998873 366678888888899999999999998885
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-05 Score=84.58 Aligned_cols=240 Identities=15% Similarity=0.126 Sum_probs=170.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-GMD---PDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 169 (637)
=|+++... .+-....|-..+......++.+.|+++.++++.. ++. --..+|.++++.-..-|.-+...++|+++.
T Consensus 1446 Dferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 35555543 2335667777777777888888888888887754 111 123467777777777777778888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 006632 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD-- 247 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-- 247 (637)
+.. -.-.+|..|...|.+.+..++|.++|+.|.+. +......|...+..+.+..+-++|..++.+.++. -|.
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 752 12346788888888888888888888888876 3456778888888888888888888888888765 233
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 006632 248 -VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL--VIFNLL 324 (637)
Q Consensus 248 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 324 (637)
.....-.+..-.+.|+.+.+..+|+..+...+ .-...|+..+++-.+.|+.+.++.+|+++...++.+.- ..|.-.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 22333445555678888888888888876543 34678888888888888888899999988888766643 356666
Q ss_pred HHHHHHcCCHhhHHHHH
Q 006632 325 IKGFVEIMDRDGVDEVL 341 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~ 341 (637)
+..--+.|+-..++.+=
T Consensus 1678 LeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHhcCchhhHHHHH
Confidence 66555667755554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-05 Score=70.96 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=121.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
..+-..+...|+-+....+....... .+.|......++....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666677778777777777765433 24566677778888888999999999999888775 78888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|++++|..-|.+..+.... ++..++.|...+.-.|+.+.|..++......+.. |...-..+.-+.+..|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999888885332 5567788888888889999999988887653322 5556667778888889999988876
Q ss_pred HH
Q 006632 517 SK 518 (637)
Q Consensus 517 ~~ 518 (637)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.7e-06 Score=72.84 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
|... ..+-..+...|+-+....+........ +.|......++....+.|++..|...|.+.....+ +|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 555677777788877777776654332 56677777788888899999999999999887653 58889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006632 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|.+.|++++|..-|.+..+.. +.+....|.|.-.+.-.|+++.|..++......+ .-|..+-..|.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999998888753 4567788888888888999999999998887764 336677777888888899999
Q ss_pred HHHHHHHHHHh
Q 006632 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|..+...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99888766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-05 Score=71.26 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=63.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW-CSDGS--MDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 442 (637)
.++.+++...++...+.. +.+...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555544443 3455556666666666666666666666655553 44555555555542 44444 3566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666554322 444555555555666666666666666544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-05 Score=75.05 Aligned_cols=187 Identities=10% Similarity=-0.068 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHH
Q 006632 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP--DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYS 392 (637)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 392 (637)
....+..+...+...|+++.|...++.+....+.. ....+..+..++...|++++|...++.+.+...... ..++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44455555566666666666666666665543211 013445555666666666666666666655421111 11344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 393 ILAKGYVRE--------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.+...+.+. |++++|.+.|+++.+.. +.+...+..+...... .. .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~-------~~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RN-------RL-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HH-------HH-------HHHHHHH
Confidence 444444433 45566666666665542 2222222211111000 00 00 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 465 MWGYSEARQPWRAEEILQIMKAF-GVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...+...|++++|+..++...+. .-.| ....+..++.++...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999888653 2123 2467888999999999999999988887554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-05 Score=69.43 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=116.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
+..|...|+++......+.+.. |. ..+...++.+++...+++..+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4467888888776544433221 10 01223677788888888888775 78999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006632 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGY-SEARQ--PWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
++|+..|++..+.... +...+..+..++ ...|+ .++|.+++++..+ ..| +...+..+...+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999986533 677888888874 67777 5999999999987 445 456888899999999999999999
Q ss_pred HHHHhhhhc
Q 006632 516 LSKIKNKER 524 (637)
Q Consensus 516 ~~~~~~~~~ 524 (637)
++++....+
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999987755
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.8e-05 Score=79.95 Aligned_cols=278 Identities=9% Similarity=0.086 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006632 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4556666666666666666666666655443 2332 2233333344455544433333 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 006632 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMD 370 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 370 (637)
.......++.-...+...|... ..+...+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2222222332222223333332 2233355556666666666666666666666655 34566666666666666 666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+|++++.+.... |...+++..+.++|.++.... +.| ++.-..+.+++.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d----------------~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDD----------------FDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-ccc----------------chHHHHHHHHHH
Confidence 666666665442 445556666666666666542 122 222223333333
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccc
Q 006632 451 EH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEM 528 (637)
Q Consensus 451 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 528 (637)
.. |..--..++..+-..|....++++++.+++.+.+ +.|+ ......+++.|. +++.+ ...++.......-.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 22 2222334555555666667777777777777766 3333 334445555544 22211 2222222111000112
Q ss_pred cccccchHHHHHHHHhhhccC
Q 006632 529 EAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 529 ~~~~~~a~~~~e~~~~~~~~~ 549 (637)
.+++..+..-.|+.+..++.+
T Consensus 290 ~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 290 RKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred CccHHHHHHHHHHHeeecCCC
Confidence 244556666667776655544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=56.64 Aligned_cols=31 Identities=48% Similarity=0.766 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006632 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
+.||..+|++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-05 Score=72.32 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 253 TIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
.+...+.+.|++++|...+........ +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566777777777777777765422 112456667777777777777777777766543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=56.26 Aligned_cols=32 Identities=47% Similarity=1.027 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=67.83 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555566666666666666666553 44556666666666666666666666666665432 245556666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 006632 471 ARQPWRAEEILQIMKA 486 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~ 486 (637)
.|+.++|+..|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00025 Score=63.91 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=49.9
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
.+..+++-|.+.++.|..- .+..+.+-|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3444455555555555432 233344444444432 23344455555555443 245555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006632 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
++|..++++++..... ++.+...++..-.+.|+..+
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 5555555555544322 44444444444444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0022 Score=63.67 Aligned_cols=415 Identities=11% Similarity=0.079 Sum_probs=249.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+-|..+|+.||+-+..+ ..+++++.++++... ++.....|..-|..-.+..+++...++|.+....- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45899999999987666 899999999999865 46677889999999999999999999999987653 356677766
Q ss_pred HHHHHh-cCChHH----HHHHHHHHHhcCCC-CCCHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCCCH
Q 006632 184 IKGYGI-AGKPEE----SVKLLDLMSREGNV-KPNLRTYNVLVRAW---------CNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 184 i~~~~~-~g~~~~----A~~~~~~m~~~~~~-~~~~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
++---+ .|+... ..+.|+-....-+. ..+...|+..+... ..+.+.+...++++++...-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 653322 233322 33344444333222 12334566555433 3455677888888888754222112
Q ss_pred HHHH------HHHHHH-------HHcCCHHHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHHhcC-
Q 006632 249 VTYN------TIATAY-------AQNGEADQAEEVIVEMEH--NGVQPNGRT---------------CGIIISGYCKEG- 297 (637)
Q Consensus 249 ~~~~------~li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~~~g- 297 (637)
..|+ .=|+.. -+...+-.|.++++++.. .|...+..+ |-.+|.-=-.++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222 111111 123346677777777643 232222211 322222111111
Q ss_pred -----CH--HHHHHHHHHHH-HCCCCCCHHHH-HH----HHHHHHHcCC-------HhhHHHHHHHHhhCCCCCCHHHHH
Q 006632 298 -----KI--KEALRFARTMK-EYGVHPNLVIF-NL----LIKGFVEIMD-------RDGVDEVLALMKEFRVNPDVITYS 357 (637)
Q Consensus 298 -----~~--~~A~~~~~~~~-~~~~~~~~~~~-~~----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 357 (637)
.. ....-.+++.. -.+..|++.-. .. .-+.+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 01111222221 12222322111 00 1112223333 344555665554433233444444
Q ss_pred HHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006632 358 TIMNAWSTAG---FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGW 433 (637)
Q Consensus 358 ~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~ 433 (637)
.+.+--...- ..+....++.++...-...-.-+|..+++.-.+..-+..|+.+|.++.+.+..+ ++.+.++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 4433221111 244555566666543222234567777887788888999999999999987666 667777777755
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 006632 434 CSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~e 511 (637)
| .++...|.++|+--+.. ..-++.--...+.-+.+.++-..+..+|++....++.|+ .++|..+++-=..-|+++.
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 57889999999987764 223444556778888999999999999999987777776 4589999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 006632 512 AKRILSKIKNKER 524 (637)
Q Consensus 512 A~~~~~~~~~~~~ 524 (637)
+.++-+++....+
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 9999888865544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-05 Score=80.24 Aligned_cols=240 Identities=13% Similarity=0.101 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006632 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
+.+...+..|+..|...+++++|.++.+...+..+. ....|..+...+.+.++.+.+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~--------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL--------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh---------------
Confidence 345678899999999999999999999977765322 333444444467777776665554 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006632 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
+.......++.-...+...|... .-+...+..+..+|-+.|+.++|..+++++++.. +.|..+.|.+...|... +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22223333343333344444443 2345577778899999999999999999998877 35788889999999888 9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006632 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD 378 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 378 (637)
+++|+.++.+.... +...+++..+.+++..+....+. +...+..+. +.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HH
Confidence 99999988887643 55566777777878777765421 222222222 22
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 379 MGKA-GIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 379 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
+... +..--..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2211 122234445555566666777777777777777654 445555566666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-05 Score=66.65 Aligned_cols=95 Identities=6% Similarity=-0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+..+..++...|++++|...|+.+.... +.+...+..+..++...|++++|...|++..+.++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 445566666666666666666666666666655432 55566666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 006632 190 AGKPEESVKLLDLMSRE 206 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~ 206 (637)
.|++++|+..|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00031 Score=75.39 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=132.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006632 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
.+.++..+-.|.....+.|..++|..+++...+..+. +...+..++..+.+.+++++|+..+++..... |.+....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 4666888888889999999999999999999887543 56678888889999999999999999988865 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006632 218 VLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 297 (637)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+..- +....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHHH------
Confidence 88888899999999999999998743 33578888888999999999999999988876532 33444444332
Q ss_pred CHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHH
Q 006632 298 KIKEALRFARTMKEYG----VHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~ 330 (637)
++..-..+++++.-.+ .+....+...++.-|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3333445555554332 22233344444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00051 Score=61.97 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=102.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
++.+.-.|++..++..-..... .+.++..-..+-++|...|.+.....-. . .|-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~--~~~~~e~d~y~~raylAlg~~~~~~~eI---~-~~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS--SKTDVELDVYMYRAYLALGQYQIVISEI---K-EGKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHccccccccccc---c-cccCChHHHHHHHHHHhhCcchh
Confidence 4555556777766654444332 1234444455566666666654433221 1 11122222222222222222222
Q ss_pred HHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 159 EEA-MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 159 ~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+.- -.+.+.+.......+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333333322222222222334455666666666655541 123333333344445555666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 238 KMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
+|.+.. +..|.+.|..++.+ .+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..+++......
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 665432 34444444444433 23455555555555432 23455555555555555555555555555555443
Q ss_pred CCCCHHHHHHHHH
Q 006632 314 VHPNLVIFNLLIK 326 (637)
Q Consensus 314 ~~~~~~~~~~ll~ 326 (637)
..++.+...++.
T Consensus 238 -~~dpetL~Nliv 249 (299)
T KOG3081|consen 238 -AKDPETLANLIV 249 (299)
T ss_pred -CCCHHHHHHHHH
Confidence 233334333333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00013 Score=78.34 Aligned_cols=148 Identities=10% Similarity=0.034 Sum_probs=125.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 102 GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 102 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
.+..++..+-.|..+..+.|.+++|..+++.+.+.. |.+......+...+.+.+++++|+..+++.....+. +.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 356678899999999999999999999999999864 555677888899999999999999999999988654 677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
.+..++.+.|++++|..+|+++...+ +.+..++..+...+-..|+.++|...|++..+.- .+....|+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 89999999999999999999999854 4558899999999999999999999999998752 3344554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-05 Score=65.46 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.....+...+.+.|++++|...|+.+...+ +.+...|..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444455555555555555555554442 3344555555555555555555555555554432 12344444455555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006632 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-05 Score=64.06 Aligned_cols=120 Identities=12% Similarity=0.051 Sum_probs=91.9
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006632 340 VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF 419 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 419 (637)
.++......+ .+......+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3444444432 244556667777888999999999999888764 4577888888999999999999999999988775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
+.+...+..+...|...|++++|...|++..+. .|+...+..+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 667788888888999999999999999998885 3555544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00068 Score=66.65 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=143.8
Q ss_pred HHHHHHcCC-hhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 006632 79 MNSLIERGK-PQEAQAIFNNLIE---GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAF 152 (637)
Q Consensus 79 ~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~ 152 (637)
+..+.+.|. +....+.|+++.. .+-.|..+..+.=+ -..+...+...-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 455666774 5555678888773 33344333211100 1112222232223332211 134555555555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006632 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
.....-..+-..+.+..+. . -...+....-.+...|++++|+..++.+.... |.|...+......+.+.++..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHH
Confidence 3333323333333222221 1 22233333344557788888888888887763 56677777777888888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 233 WNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 233 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.++++... .|+ ...+..+..++.+.|++.+|+.+++...... +.|...|..|..+|...|+..++.....+..
T Consensus 360 ~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~- 435 (484)
T COG4783 360 IERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY- 435 (484)
T ss_pred HHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH-
Confidence 8888888876 344 5666677888888888888888888877654 3577888888888888888888877776664
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
...|+++.|...+....+.
T Consensus 436 -----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 -----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HhCCCHHHHHHHHHHHHHh
Confidence 3447777777777666553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0027 Score=57.03 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006632 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
+..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+++|.++++.+.+.+ +.|..++-.-+.+.-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444455556677777777777765542 2222222222222445577777777777777765 3466666655556666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A 442 (637)
.|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+++++-.. |-++..+..+...+...| +.+.|
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 67766777776666654 45678888888888888888888888888877653 455666666666554444 45567
Q ss_pred HHHHHHHHHC
Q 006632 443 IEVFDKMCEH 452 (637)
Q Consensus 443 ~~~~~~m~~~ 452 (637)
.++|.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 7777777764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0023 Score=57.41 Aligned_cols=84 Identities=18% Similarity=0.221 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|++++|+++++.+.+.++. |.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 34444555555544444321 3334433333344444444444444444443 33444444444444444444444444
Q ss_pred HHHHHHH
Q 006632 235 VMHKMAA 241 (637)
Q Consensus 235 ~~~~~~~ 241 (637)
.++++.-
T Consensus 176 ClEE~ll 182 (289)
T KOG3060|consen 176 CLEELLL 182 (289)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00088 Score=65.88 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..|+++.|+..++.+....+ -|+..+......+.+.|+.++|.+.++++.... |.....+-.+..++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHH
Confidence 34444455555544444321 133344444444455555555555555544432 111334444444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
.+++...... +-|+..|..|..+|...|+..++.....+.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5554444332 334445555555555555555444444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00023 Score=60.98 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 464 (637)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+...+....|+. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4777777777777777753 3331 22333456677788888888888888876533322 244556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
...+...|++++|+..++.... -......+...++++.+.|++++|+..+++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888765432 1223445667788888888888888887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00023 Score=70.63 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.....|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|++++++..... +.+...+......
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344455555666677777777777777753 33 34456677777777777777777777653 4466666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006632 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
+.+.++++.|+.+.+++.... +.+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777652 2234477777777777777777777666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00064 Score=58.18 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006632 150 NAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~ 170 (637)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333344444444444444443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00033 Score=69.50 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
....++..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++.+..+..+ .+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34455566666677788888888777653 443 33466667677777777777777776533 25666666667777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.++++.|+.+.+++.... |-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7888888888888877753 34456788888888888888888877777764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=48.30 Aligned_cols=33 Identities=36% Similarity=0.900 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.7e-05 Score=47.85 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS 106 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 106 (637)
+||.++++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.064 Score=57.10 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 75 MTKLMNSL--IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 75 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
|..++.++ .+.|+.++|..+++.....+. .|..|...+-.+|...++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 33444444 578899999988887765432 27778888888888999999999999988875 46677778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK----------PEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.+.+++.+-.++--++-+. ++-++..+=++++.+.+.-. ..-|.+.++.+.+.++.-.+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8888776544443333332 22244444455555544321 234556666666554211122222223344
Q ss_pred HHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006632 223 WCNEKNITEAWNVMH-KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
....|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 456778888888883 333332333444445566677777788777777777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00043 Score=53.88 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ 473 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 473 (637)
++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.|++...... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3344444444555555554444432 22233444444444444445555554444444321 122344444444444444
Q ss_pred hhHHHHHHHHH
Q 006632 474 PWRAEEILQIM 484 (637)
Q Consensus 474 ~~~A~~~~~~m 484 (637)
+++|...++..
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.6e-05 Score=46.89 Aligned_cols=32 Identities=31% Similarity=0.679 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.061 Score=55.45 Aligned_cols=205 Identities=9% Similarity=0.040 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCC
Q 006632 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA----------FSESGNMEEAMDTFWKMKESGL 173 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~g~~~~A~~~~~~m~~~~~ 173 (637)
.|.+..|..+.......-.++.|...|-+... -+.......|-.. -+--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 67888898888776666677777766655432 1222111111111 112478888888887776542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 174 TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
..|..+.+.|++-...++++.--....-..-...|+.+...++....+++|.+.+..-.. . ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 235666677777666666543111100001135678888888888888888877765431 1 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006632 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
.+.++.+...+++-+.+-..+ +.+....-.+.+++...|.-++|.+.|-+-. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 556666666666555444333 3456667778888888888888877764432 12 234556777777
Q ss_pred HhhHHHHHHH
Q 006632 334 RDGVDEVLAL 343 (637)
Q Consensus 334 ~~~a~~~~~~ 343 (637)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777776554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.9e-05 Score=46.29 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006632 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKP 105 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 105 (637)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.092 Score=55.98 Aligned_cols=225 Identities=12% Similarity=0.122 Sum_probs=151.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
.....+++..|++....+.+. .|+.. |..++.++ .+.|+.++|..+++.....+ ..|..+...+-..|...+..
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 345678999999999998875 45543 34444444 68899999999888877665 44888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-C---------C
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-K---------N 228 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g---------~ 228 (637)
++|..+|++..+.. |+......+..+|++.+.+.+-.+.--++.+. .|.+...+=++++.+.+. . -
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999998863 56777777888888888776644444444332 234444444444444321 1 1
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVE-MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++.. ..+.-..-+...-+.-++.+...+++.+-.++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 234566677776543 111221122223345678899999999843 333323334445556778888999999999999
Q ss_pred HHHHHCC
Q 006632 307 RTMKEYG 313 (637)
Q Consensus 307 ~~~~~~~ 313 (637)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 9988876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0023 Score=53.81 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
-.+..-+...|++++|.++|+-+.... +-+..-|-.|..++-..|++++|+..|..+....+ -|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 334444556677777777777666553 44556666666666677777777777777666543 2556666666667777
Q ss_pred CChhHHHHHHHHHH
Q 006632 472 RQPWRAEEILQIMK 485 (637)
Q Consensus 472 g~~~~A~~~~~~m~ 485 (637)
|+.+.|.+.|+...
T Consensus 117 G~~~~A~~aF~~Ai 130 (157)
T PRK15363 117 DNVCYAIKALKAVV 130 (157)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00051 Score=63.33 Aligned_cols=95 Identities=14% Similarity=0.239 Sum_probs=62.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWR 476 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 476 (637)
..+.+++++|+..|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+. +.|... +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 456667777777777776663 55666666666677777777777777666666 334433 67777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHH
Q 006632 477 AEEILQIMKAFGVHPQKSTFL 497 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~ 497 (637)
|++.|++..+ +.|+.++|.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHH
Confidence 7777766655 666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=64.26 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=89.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 006632 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTK 510 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~ 510 (637)
-..+.+++++|+..|.++++.... |.+-|..-..+|.+.|..+.|++-.+..+. +.|.. ..|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 356889999999999999996533 677788889999999999999999888877 66664 48999999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccchHHHHHHHHhhhcc
Q 006632 511 EAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEAT 548 (637)
Q Consensus 511 eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~ 548 (637)
+|++.|++..+..|++. ........++..+..+++
T Consensus 167 ~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e~~~ 201 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNE---SYKSNLKIAEQKLNEPKS 201 (304)
T ss_pred HHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcCCCc
Confidence 99999999999988764 233344455666655553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=65.92 Aligned_cols=88 Identities=9% Similarity=-0.029 Sum_probs=47.0
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 362 AWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
.+...|+++.|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3344555555555555555543 2344555555555555555555555555555543 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 006632 442 AIEVFDKMCE 451 (637)
Q Consensus 442 A~~~~~~m~~ 451 (637)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00083 Score=52.23 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
+..+...+...|++++|...++.+.+.. +.+..++..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566677788888888888777653 3344667777777888888888888888877764 4455677777788888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006632 436 DGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (637)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=54.52 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPN---VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLM 465 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~ 465 (637)
+..++..+.+.|++++|.+.|.++.+.. +.+ ...+..+..++...|++++|...|+++...... .....+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3344444455555555555555554431 111 223334444455555555555555554432111 0122344444
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 006632 466 WGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.++.+.|+.++|...++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 444444555555555444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=57.28 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006632 386 PDAHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
.+..+|..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|+..+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 355555555555543 24445455555555555555555555555554432 2111 0111111110
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------hcc----cccc
Q 006632 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK-------ERT----NEME 529 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-------~~~----~~~~ 529 (637)
- .-.+.+-|++++++|..+|+-||.+++..+++++++.+. +.+-+.+|.-. +|. ..+.
T Consensus 114 ------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~---p~~K~~rmmYWmpkfk~~nP~plp~~lP~ 182 (228)
T PF06239_consen 114 ------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH---PMKKYRRMMYWMPKFKNINPWPLPRPLPQ 182 (228)
T ss_pred ------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHhccCCCCCCcCCCC
Confidence 0 112344689999999999999999999999999977764 44444444322 111 1334
Q ss_pred ccccchHHHHHHHH
Q 006632 530 AEEDIPVESLERLY 543 (637)
Q Consensus 530 ~~~~~a~~~~e~~~ 543 (637)
...++|..+++++-
T Consensus 183 Dp~eLA~lal~rm~ 196 (228)
T PF06239_consen 183 DPLELAKLALRRMS 196 (228)
T ss_pred CHHHHHHHHHHHhc
Confidence 56678888888874
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0045 Score=54.74 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+..+...|...|++++|...|++..+....+. ...+..+...+...|++++|+..++++.+.... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444555555555555555555544321111 234555555555555555555555555543211 23344444444
Q ss_pred HHhcCC
Q 006632 468 YSEARQ 473 (637)
Q Consensus 468 ~~~~g~ 473 (637)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0022 Score=63.96 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=57.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006632 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 44455666666666666666653 44556666666666666666666666666666432 14445666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 006632 476 RAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~ 494 (637)
+|+..|++..+ +.|+..
T Consensus 88 eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDS 104 (356)
T ss_pred HHHHHHHHHHH--hCCCCH
Confidence 66666666655 344433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0035 Score=51.43 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=6.4
Q ss_pred HHHcCChhHHHHHHHHH
Q 006632 82 LIERGKPQEAQAIFNNL 98 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~ 98 (637)
+.+.|++++|.+.|+.+
T Consensus 12 ~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=65.59 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006632 313 GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF--RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+.+.+......+++.+....+.+.+..++...... ....-..|..+++..|...|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777766554 1222234455788888888888888888888777888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
++.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777666566666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.005 Score=54.48 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666677777888888888887775432221 3567777888888888888888888877753 44566677777
Q ss_pred HHHHhcCCHHHHHHH
Q 006632 431 SGWCSDGSMDRAIEV 445 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~ 445 (637)
..+...|+...+..-
T Consensus 114 ~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 114 VIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHcCChHhHhhC
Confidence 777777765444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0051 Score=64.15 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 006632 349 VNPDVITYSTIMNAWSTAG-----FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE--------QEPEKAEELLMTMI 415 (637)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 415 (637)
.+.+...|...+.+..... ..+.|..+|++.++.. +.....+..+..+|... .++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666666543322 2556777777766653 12234444433333221 11223333333332
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006632 416 ES-GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 416 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.. ..+.+...|..+...+...|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 21 123344556666555556677777777777766643 5666666666677777777777777766654 444444
Q ss_pred H
Q 006632 495 T 495 (637)
Q Consensus 495 ~ 495 (637)
+
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 3
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=55.88 Aligned_cols=79 Identities=28% Similarity=0.326 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 006632 437 GSMDRAIEVFDKMCEHGVS-PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~ 514 (637)
|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..++++ .+ ..|+. .....++.++...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555543221 1233334455555555555555555554 21 12221 222233555555555555555
Q ss_pred HHHH
Q 006632 515 ILSK 518 (637)
Q Consensus 515 ~~~~ 518 (637)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.003 Score=53.21 Aligned_cols=99 Identities=9% Similarity=-0.096 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEA 502 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 502 (637)
....-.+..-+...|++++|..+|+-+....+. +..-|..|.-+|-..|++.+|+..|.......+. ++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556666788999999999999999885432 5667889999999999999999999999874432 46678889999
Q ss_pred HHHcCCHHHHHHHHHHHhhhh
Q 006632 503 RRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+...|+.+.|++.|+.+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987663
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=57.14 Aligned_cols=276 Identities=11% Similarity=-0.010 Sum_probs=143.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006632 218 VLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 297 (637)
.....+.+..++.+|+..+....+.... +..-|..-+..+...|++++|.--.+.-.+... .........-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhH
Confidence 3445666666777777777777665322 233344444455556666666554444333211 11122333344444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC-CCCCCHHHHHHHH-HHHHHcCChhHHHHH
Q 006632 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-RVNPDVITYSTIM-NAWSTAGFMDKCKEI 375 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~g~~~~a~~~ 375 (637)
+..+|...++.-. .+ ....+...++..... .-+|...++..+- .++.-.|+.+.|.++
T Consensus 132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444443110 00 001111111111111 1123333333332 244566777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCCHH
Q 006632 376 FDDMGKAGIKPDAHAYSILAK--GYVREQEPEKAEELLMTMIESGFHPNVVI-------------FTTIISGWCSDGSMD 440 (637)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~ 440 (637)
-..+.+.. ....+..+++ .+--.++.+.|...|++.++. .|+... |..=..-..+.|++.
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 77666643 1222223332 233466777777777777664 243322 122223345778888
Q ss_pred HHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 006632 441 RAIEVFDKMCEH---GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 441 ~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|.. ..|..-..++...++|++|.+-+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888753 3445556677777777788888888877776654 33321 23334445566677888888888
Q ss_pred HHHhhh
Q 006632 517 SKIKNK 522 (637)
Q Consensus 517 ~~~~~~ 522 (637)
+++...
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 887544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.016 Score=55.93 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG----GHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...|....+.|-..|++++|...|.+..+. +-+. -...|.....++. ..++++|...+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~--------------- 98 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYE--------------- 98 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHH---------------
Confidence 445666677777777777777777665431 1000 0111222222221 223444433333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIA-GKPEESVKLLDLMSRE----GNVKPNLRTYNVLVR 221 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~ 221 (637)
..+..|...|++..|-+++..+ ...|-.. |++++|++.|.+.... +....-..++..+..
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3334555666666555544443 3344444 6777777777665432 100001234555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC--hhhHHHHHH
Q 006632 222 AWCNEKNITEAWNVMHKMAASGMKP-----DVV-TYNTIATAYAQNGEADQAEEVIVEMEHNG--VQPN--GRTCGIIIS 291 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~ 291 (637)
.+.+.|++++|..+|++....-... +.. .+...+-++...|++..|...+++..... +..+ ......|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 6777777777777777765532211 111 12223335555677777777777665432 1111 223344455
Q ss_pred HHHh--cCCHHHHHHHHHHHH
Q 006632 292 GYCK--EGKIKEALRFARTMK 310 (637)
Q Consensus 292 ~~~~--~g~~~~A~~~~~~~~ 310 (637)
+|-. ...+.+++.-|+.+.
T Consensus 244 A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHHcccC
Confidence 5433 123555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.12 Score=50.81 Aligned_cols=436 Identities=10% Similarity=0.085 Sum_probs=228.4
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...+.++.+|-.|+.-|-.+|..++.++++++|..- .+--..+|..-+++-...+++.....+|.+.+... .+...|
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHH
Confidence 456788999999999999999999999999999752 22244578888887778899999999999998764 456667
Q ss_pred HHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHhcCC
Q 006632 146 NAVINAFSESGNM------EEAMDTFWKMKE-SGLTPT-TSTYNTLIKGYG---------IAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 146 ~~ll~~~~~~g~~------~~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~ 208 (637)
...+.--.+.... ..-.++|+-... .++.|- ...|+..+..+- .+.+++.....+.++....
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP- 191 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP- 191 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-
Confidence 7666544443311 112233443333 233333 234555544332 2345566777777776531
Q ss_pred CCCC-HHHHHH------HHHH-----HHh--cCCHHHHHHHHHHHHH--CCCC----CCHHHH-----------HHHHHH
Q 006632 209 VKPN-LRTYNV------LVRA-----WCN--EKNITEAWNVMHKMAA--SGMK----PDVVTY-----------NTIATA 257 (637)
Q Consensus 209 ~~~~-~~~~~~------li~~-----~~~--~g~~~~A~~~~~~~~~--~g~~----~~~~~~-----------~~li~~ 257 (637)
+ .+ ...|+- =+.. ++. .--+-.|...++++.. .|.. .+..++ ...|..
T Consensus 192 ~-~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 192 M-GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 0 11 122211 1111 110 1113345555555432 2221 112222 223322
Q ss_pred HHHc-----CC-H-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH
Q 006632 258 YAQN-----GE-A-DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK-GFV 329 (637)
Q Consensus 258 ~~~~-----g~-~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~ 329 (637)
-... |+ . ....-+|++.... +.....+|----..+...++-+.|++....-... .|+ .+..+. .|.
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~ye 344 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYE 344 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHh
Confidence 1111 11 1 1222334444332 1233445554445555667777777766544322 222 222222 222
Q ss_pred HcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST---AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
-..+-+.....|+...+. ...--..+..=+. -|+++...+++-.-. ..-..+|..++..-.+..-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred hcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHH
Confidence 333333333333322110 0000000000011 222322222211111 1234566667776666777777
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHH
Q 006632 407 AEELLMTMIESG-FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF-ETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
|..+|-++.+.+ +.+++.++++++.-++ .|+...|..+|+--... -||...| .-.+.-+...++-..|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 888888877776 4567777777776443 56777777877765543 2444433 34455566777777788888754
Q ss_pred HHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 485 KAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 485 ~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
... +..+ ..+|..+++--..-|++..+..+=+++.+..|.
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 321 2222 457777777777778888777777777666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0032 Score=60.53 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|..+|+...+. ++.+...|...+..+.+.++.+.|..+|++..
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44444444433 23334444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=43.28 Aligned_cols=29 Identities=45% Similarity=0.968 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=61.81 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA-LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
.|..+++..-+.+..+.|+.+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666555555666666666665321 1122233322222 11234444455555555544 344555555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006632 153 SESGNMEEAMDTFWKMKESGLTPT---TSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
.+.++.+.|+.+|++.... +.++ ...|...+..-.+.|+++.+..+..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 12455555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=64.70 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=101.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHH
Q 006632 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY--GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT 355 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (637)
+.+.+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..+.+.+++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446666777788888888899999998888765 2222344667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006632 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877667777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0026 Score=56.06 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
...+..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++...... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 4445566666666777777777777776542111 124666677777777777777777777765421 1233455555
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 006632 466 WGYS-------EARQPWRAEEILQ 482 (637)
Q Consensus 466 ~~~~-------~~g~~~~A~~~~~ 482 (637)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5555554444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0094 Score=62.21 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=100.2
Q ss_pred CCCCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 006632 382 AGIKPDAHAYSILAKGYVR--E---QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG--------SMDRAIEVFDK 448 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~ 448 (637)
...+.+...|...+.+... . +..+.|..+|++.++.. |.....|..+..++.... +...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446788889888887543 2 23779999999999874 444556665555443321 23344455555
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 449 MCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 449 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.... ....+...|..+.......|++++|...++++.+ +.|+...|..++.++...|+.++|.+.++++....|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4443 1334567788887777788999999999999988 557888999999999999999999999988755533
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.004 Score=54.86 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...+..+...+...|++++|...|+........+ ...++..+...|...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666777778888888888888887653222 23577888888888899999999888887753 44456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 006632 431 SGWC-------SDGSMDRAIEVFDKM 449 (637)
Q Consensus 431 ~~~~-------~~g~~~~A~~~~~~m 449 (637)
..+. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 667777555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00034 Score=53.32 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=8.8
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 006632 183 LIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~ 202 (637)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.13 Score=49.96 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (637)
........+.+.+..++..|+..+...++.. +.++.-|..-+..+...+++++++.-.++-++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3334445566777778888888888887753 23455566666667777777777665555444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=42.47 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGG 102 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 102 (637)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.058 Score=46.25 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006632 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PNLKTFET 463 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 463 (637)
.|+...-..|..+..+.|+..+|...|.+...--+..|....-.+..+....+++.+|...++++.+.... -.+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555555666677777777777777777665444556666666666777777777777777776654210 01224445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.+++...|+..+|...|+...+ .-|+...-......+...|+.+||..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56667777777777777777665 3455444334444556666666554433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0033 Score=49.00 Aligned_cols=77 Identities=17% Similarity=0.380 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 76 TKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQK--------RFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...|..+...+++..-..+|+.+.+.|+ .|+..+|+.++.+.++.. +....+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677888888888888888888 888888888887776542 1223444455555555555555555
Q ss_pred HHHHHH
Q 006632 147 AVINAF 152 (637)
Q Consensus 147 ~ll~~~ 152 (637)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.25 Score=51.19 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=128.8
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHCCCC
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLL----------AALTIQKRFNSIHSIMSQVEENGMD 139 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll----------~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (637)
|.+..|..|.......-.++-|...|-+... .+.......|- ..-+-.|++++|.++|-.|.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 5567787777776666677777777765532 22221111111 11223478999999988776653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 006632 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT 215 (637)
Q Consensus 140 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 215 (637)
..|..+.+.|++-...++++.- |-..| ...|+.+...+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 2466777888887766665431 11112 346888888888888888888888754321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006632 216 YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
...+.++.+..++++-+.+-..+ +-|....-.+..++.+.|.-++|.+.|-+.. . | -..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHH
Confidence 23456666666666655554444 3466667778899999999999988874432 1 2 234567888
Q ss_pred cCCHHHHHHHHHHHH
Q 006632 296 EGKIKEALRFARTMK 310 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~ 310 (637)
.+++.+|.++-+...
T Consensus 891 LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888888776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.084 Score=45.33 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006632 175 PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PDVVTYNT 253 (637)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ 253 (637)
|++.....|..+....|+..+|...|.+... |.+..|......+..+....+++..|...++.+.+.... .++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555556666666777777777777766653 334556666666666666777777777777666554210 11223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006632 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
+.+.+...|.+..|+..|+..... -|+...-......+.+.|+.+++..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 566677777777777777776654 23443333344556666666555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.007 Score=47.25 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 111 TTLLAALTIQKRFNSIHSIMSQVEENGM-DPDSIFFNAVINAFSESG--------NMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
...|..|...+++...-.+|..+.+.|+ -|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666667888888888888888888 788888888888776643 2345566777777777777777777
Q ss_pred HHHHHHHh
Q 006632 182 TLIKGYGI 189 (637)
Q Consensus 182 ~li~~~~~ 189 (637)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.017 Score=53.93 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
.|...|..|...|...|+++.|..-|.+..+.. ++|+..+..+..++.... ...++..+|+++...+.. |..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 345555555555555555555555555555442 444444444444433221 233455555555543211 333444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 006632 463 TLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444455555555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.072 Score=51.40 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 006632 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-KNITEAWNVMHKMAAS----GMKPD--VVTYNTIAT 256 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----g~~~~--~~~~~~li~ 256 (637)
+..|...|++..|-.++..+ ...|... |++++|++.|++..+. | .+. ...+..++.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 34455555555555544443 3345455 6777777777766532 2 111 234445666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 257 AYAQNGEADQAEEVIVEMEHNGVQPNG------RTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.+.|++++|.++|+++.......+. ..+...+-++...|++..|.+.+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677777777777777776554322111 1112223344455666666666666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=47.04 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
...+.+.|++++|...|+++++.. +.+...|..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555443 33444555555555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=47.35 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG-SMDRAIEVFDKMCE 451 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 451 (637)
.+|..+...+...|++++|+..|.+.++.. +.+...|..+..+|...| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444444444444444444432 333444444444444444 34444444444443
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.2 Score=46.96 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 253 TIATAYAQNGEADQAEEVIVEMEHN--GVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
.+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3556677777777777777777654 122234455566677777777777776665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.1 Score=48.85 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=28.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006632 430 ISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
..-|.+.|.+..|+.-|+.+++. +.+........++.+|...|..++|......
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455566666666666666543 2222333455555666666666666555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=46.62 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...+...|++++|+..|+++++.... +...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566666777777777766664411 444666666666667777777766666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.051 Score=49.30 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006632 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 145 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
.+.++..+.-.+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33344444444444444444444444443444444444444444455555554444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=47.19 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 006632 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIMKA 486 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 486 (637)
+..+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556777777777777777777777777764321 4446667777777777 57777777766654
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.039 Score=44.84 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=26.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 396 KGYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+|++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555554443222 22333444445555555555555555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=51.27 Aligned_cols=88 Identities=18% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 006632 105 PSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES----------------GNMEEAMD 163 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~A~~ 163 (637)
.+..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355555555555543 345566666666777777777777777777665431 12345666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
++++|...|+-||..++..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.039 Score=51.56 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAASGMKPDVVTYN 252 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 252 (637)
|...|-.|...|...|+.+.|..-|....+.. +++...+..+..++... ....++..+|+++++.+ +-|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 55566666666666666666666666665543 34555555555444322 22345566666666543 22444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 253 TIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|...+...|++.+|...++.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555666666666666666666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=45.90 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006632 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|++++|+..|+++.+..+. +...+..+..+|.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444333222 333333444444444444444444444433
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0024 Score=46.19 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.|++++|+++|+++.... |.+...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 23444444444444444444444444444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.38 Score=46.89 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.-+.-+...|+...|.++-.+.. -||...|...+.+++..|+|++-..+... +-.++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445666778899988888877774 68999999999999999999887765432 124578999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..|...+|..+..+ +. + ..-+..|.+.|.+.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999988876 22 2 34567788999999998876554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.19 Score=51.59 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------- 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 459 (637)
+..+...+..-+.+...+.-|.++|.+|-.. .+++......+++.+|..+-++.-+ ..||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3444555555555666677777777776421 2455566677777777777766544 233321
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 460 ----TFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 460 ----~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
-|..-=.+|.++|+..||.++++++.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12222234555555556665555553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.059 Score=43.78 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPT--TSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555554443322 12333344445555555555555554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.029 Score=52.91 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=45.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHHcC
Q 006632 434 CSDGSMDRAIEVFDKMCEHGVSPNL----KTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~g 507 (637)
.+.|++++|+..|+.+++.. |+. ..+..+..+|...|++++|...|+.+.+ +.-.|. ...+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555555432 221 2444555555556666666666655543 111111 223444555555666
Q ss_pred CHHHHHHHHHHHhhhhc
Q 006632 508 LTKEAKRILSKIKNKER 524 (637)
Q Consensus 508 ~~~eA~~~~~~~~~~~~ 524 (637)
+.++|...++++....|
T Consensus 232 ~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 66666666666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=55.97 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIE----SGF-HPNVV 424 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~ 424 (637)
.|..|...|.-.|+++.|+..++.-+. .|- ......+..|..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677889998888765332 121 11245677788888889999999988876432 221 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+..+|..+|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566788888888889999988876432 11 11234578889999999999999888776654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.47 Score=46.23 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006632 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (637)
.+.+.-+.-+...|+...|.++..+.. .|+..-|...+.+++..++|++...+-.. +.+++-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 344555666667777777777766654 56777777778888888877766654321 12346677777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
.+.|...+|..+...+ + +..-+.+|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777666552 1 14456677777777777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.01 Score=57.05 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=137.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHH
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVE--EN--GM-DPDSIFFNAVIN 150 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~ll~ 150 (637)
...+++.|+....+.+|+..++.|-.. -...|..|..+|.-.+++++|++.+..=+ .+ |- .-...+...|..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 456889999999999999999876321 13356777788888889999988765421 11 10 001122233444
Q ss_pred HHHhcCCHHHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHh
Q 006632 151 AFSESGNMEEAMDTFWK----MKESGL-TPTTSTYNTLIKGYGIAGK--------------------PEESVKLLDLMSR 205 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~----m~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 205 (637)
.+--.|.+++|...-.+ ..+.|- ......+..+...|...|+ ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44455666666543222 222221 0123455567777766553 2233333332111
Q ss_pred ----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006632 206 ----EGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA----ASGMK-PDVVTYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 206 ----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
.|.--.--..|..|...|.-.|+++.|+...+.-+ +.|-+ .-...+..|.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11000011234445555555667777766554322 11211 1123455666677777777777776665422
Q ss_pred ----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006632 277 ----NGV-QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY----G-VHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 277 ----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
.|- .....+..+|...|.-..++++|+.++.+-... + ..-....+-++..+|...|..+.|....+.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 111 122344556666666666677777666543211 0 111334555666666666666666555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.61 Score=46.12 Aligned_cols=427 Identities=14% Similarity=0.123 Sum_probs=232.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 006632 82 LIERGKPQEAQAIFNNLIEGGHKPSLV------TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA--FS 153 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~ 153 (637)
+-+++++.+|.++|.++.+. ...+++ .-+.++++|.. ++.+.....+....+. .| ...|-.|..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 34789999999999998764 222322 33456777764 4555555555555443 22 2223333333 33
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHH
Q 006632 154 ESGNMEEAMDTFWKMKES--GLTP------------TTSTYNTLIKGYGIAGKPEESVKLLDLMSREG---NVKPNLRTY 216 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~ 216 (637)
+.+.+..|.+.+..-... +..| |-+.-+..++.+...|++.+++.+++++...- ....++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888765543 2111 22223566788899999999999999987642 123688888
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 006632 217 NVLVRAWCNEKN---------------ITEAWNVMHKMAAS------GMKPDVVTYNTIATAYAQN--GEADQAEEVIVE 273 (637)
Q Consensus 217 ~~li~~~~~~g~---------------~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 273 (637)
+.++-.+.+.-- ++.+.-+..+|... .+.|-......++....-. ....--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 886665543211 12222222222211 1122222222222221111 111112222222
Q ss_pred HHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006632 274 MEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVH----PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 274 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
-...-+.|+- -+...|+..+.+ +.+++..+.+.+....+. .=..++..++...++.++...|...+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 2223333442 223344444444 555555555554332111 123467888888888899888888888776644
Q ss_pred CCCCHHHH-------HHHHHHHH----HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCC-HHHHHHHHHH
Q 006632 349 VNPDVITY-------STIMNAWS----TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK---GYVREQE-PEKAEELLMT 413 (637)
Q Consensus 349 ~~~~~~~~-------~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~-~~~A~~~~~~ 413 (637)
|+...- ..+.+..+ ..-+...=+.++..+....+. ......-|+. -+-+.|. -++|+.+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 222111 11112211 111233334455555544321 1222222332 2344555 7889999999
Q ss_pred HHHCCCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHHHHCCCCCCH----HHHHHHH--HHHHhcCChhHHHHH
Q 006632 414 MIESGFHPNVVIFTTIIS----GWCSD---GSMDRAIEVFDKMCEHGVSPNL----KTFETLM--WGYSEARQPWRAEEI 480 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~--~~~~~~g~~~~A~~~ 480 (637)
+.+-. +-|...-|.+.. .|.+. ..+.+-+.+-+-+.+.|+.|-. ..-+.|. .-+...|++.++.-+
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88753 345544444332 22221 2233444444445567877643 3333443 345568899888766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006632 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
-.-+.+ +.|+..+|..++-.+....+++||..++.++|.
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 555555 889999999999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.25 Score=50.75 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
.+.+-+-.|...|.+++|.++--- |+ ...-|..|.......-+++-|.+.|.+....
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------------- 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL----------------- 614 (1081)
T ss_pred cccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------------
Confidence 344445567788888777653211 11 2223444444333334455555544433221
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.+-+-..-++++.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 11222334566667766666543 34445566777777777754
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.11 Score=44.08 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=55.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
+...|++++|..+|+-+...+ +-|..-|..|..+|-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 346677777777777666554 44556666666666677777777777766655433 2444455566666677777777
Q ss_pred HHHHHHHHH
Q 006632 478 EEILQIMKA 486 (637)
Q Consensus 478 ~~~~~~m~~ 486 (637)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.051 Score=46.49 Aligned_cols=69 Identities=12% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKST 495 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 495 (637)
...++..+...|++++|+.+.+.+....+ -|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34444555556666666666666655432 244456666666666666666666665542 3566666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=43.22 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
..|.+.+++++|.++++.+...+ |.++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666665553 445555555555666666666666666666553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.039 Score=52.06 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPNLKTFETL 464 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 464 (637)
|...+..+.+.|++++|...|+.+++. .|+ ...+..++..|...|++++|...|+.+.+.-. ......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334456666666666666554 222 23455556666666666666666666654311 0113344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 006632 465 MWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+...|+.++|..+|+...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.64 Score=42.48 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-----HHH
Q 006632 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY-----SIL 394 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 394 (637)
+.+.++..+...+.+.-...+++.+++...+.++.....+.+.-.+.|+.+.|...|+...+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445556666666677777777777777666667777788888888888888888888876653222333233 233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
...|.-++++..|...+.++...+ +.|+...|.-.-+..-.|+..+|++..+.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556777888888888777664 556666666666666678888888888888774
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.9 Score=44.06 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHA-YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVF 446 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (637)
+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+. .|.+.++...+ +.+.|+ .++.-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cHHHHH
Confidence 344555555555443 344322 223356778889999999999988876 45555444332 334443 444444
Q ss_pred HHHHHC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhh
Q 006632 447 DKMCEH-GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT-GLTKEAKRILSKIKNK 522 (637)
Q Consensus 447 ~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 522 (637)
++.... .++|| .+....+..+-...|++..|..--+...+ ..|....|..|.++-... |+-+++..++-+...-
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 444321 24454 45777788888888998888776666555 778888999998886555 9999999998887543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.42 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 006632 254 IATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+...|.+.|.+..|..-++.+++
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 33444555555555555555444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.35 Score=44.00 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=28.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 254 IATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
....+...|++++|...|+.+....+. --....-.++.++.+.|++++|...+++.++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455556666666666665543211 1122333445555555666666655555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.024 Score=41.63 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006632 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
..|.+.+++++|+++++.+...++. +...+......+...|++++|.+.|+...+ ..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 4567777888888888888775432 455666777777788888888888877766 445443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.038 Score=47.25 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKTFE 462 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 462 (637)
..+...++..+...|++++|..+.+.+.... |-|...|..+|.+|...|+..+|+++|+++. +.|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456667778889999999999999999875 7788999999999999999999999998875 358999887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.9 Score=45.66 Aligned_cols=346 Identities=11% Similarity=0.024 Sum_probs=196.5
Q ss_pred HHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhc
Q 006632 134 EENGMDPDSIFFNA-----VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP--EESVKLLDLMSRE 206 (637)
Q Consensus 134 ~~~~~~~~~~~~~~-----ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~ 206 (637)
...|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ...++.....-+.+..+. +++++.+++=...
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 44566666655544 455666777888888887776543222 256777777777766432 2233333222221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 006632 207 GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK----PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 282 (637)
. ......|..+.+-....|+.+-|..+++.=...+.. .+..-+..-+.-+.+.|+.+....++-.+... .+
T Consensus 503 ~--~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~ 577 (829)
T KOG2280|consen 503 K--LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LN 577 (829)
T ss_pred c--CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HH
Confidence 1 134567777888788888888888877653332211 11122334555667778888877777766543 11
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHH-HH----HhhCCCCCCHHHHH
Q 006632 283 GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVL-AL----MKEFRVNPDVITYS 357 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~----~~~~~~~~~~~~~~ 357 (637)
...+... ..+...|..+|.+..+. .|..+ +-+.|-+..+..++-.+. +. -...+..|+ ..
T Consensus 578 ~s~l~~~------l~~~p~a~~lY~~~~r~---~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 578 RSSLFMT------LRNQPLALSLYRQFMRH---QDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHHH------HHhchhhhHHHHHHHHh---hchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 2222211 22345566666665442 11111 111122222222111111 11 001111222 22
Q ss_pred HHHHHHHHcCChh----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 358 TIMNAWSTAGFMD----------KCKEIFDDMGK-AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 358 ~l~~~~~~~g~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
....++++..... .-.++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 3334444433311 11222222222 1222223344445566778899999999888876 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006632 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
-.-+.+++..+++++-+++-+.+. .+.-|.....+|.+.|+.+||.+++-+.. +.. ..+.+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHh
Confidence 999999999999988766555432 36678888999999999999999987653 222 577889999
Q ss_pred CCHHHHHHHHHHH
Q 006632 507 GLTKEAKRILSKI 519 (637)
Q Consensus 507 g~~~eA~~~~~~~ 519 (637)
|++.+|.++.-+-
T Consensus 784 ~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 784 GDVKEAADLAAEH 796 (829)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999887553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.46 Score=47.67 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 369 MDKCKEIFDDMGK-AGIKPD-AHAYSILAKGYV---------REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 369 ~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+.|..+|.+... ....|+ ...|..+...+. ......+|.++.++..+.+ +.|......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4566667777662 122333 333333333222 1234567888888888886 788898888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 006632 438 SMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK---STFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~eA~ 513 (637)
+++.|...|++.... .||.. +|......+..+|+.++|.+.+++..+ ..|.. ......++.|+.. .+++|+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 999999999999885 46654 677777778889999999999998665 55553 2444555677665 468888
Q ss_pred HHHHHHh
Q 006632 514 RILSKIK 520 (637)
Q Consensus 514 ~~~~~~~ 520 (637)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 8876643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.024 Score=42.31 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIES----GF-HPN-VVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555544321 10 011 223444444444555555555554444
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.8 Score=42.81 Aligned_cols=26 Identities=15% Similarity=-0.098 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 461 FETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..++.++.-.|+.++|.+..++|.+
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 33444444445555555555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.3 Score=43.86 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=86.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 358 TIMNAWSTAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
.++-.|....+++..+++.+.+...- +.....+-...+-++.+ .|+.++|++++..+......+++.+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444666666666666666665431 11122222233334444 6666777777666444434566666666665
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh----HHHHHH---HHH-HHCCCC---C
Q 006632 432 GWCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW----RAEEIL---QIM-KAFGVH---P 491 (637)
Q Consensus 432 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~m-~~~g~~---p 491 (637)
.|-. ....++|+..|.+.-+. .||..+-..++..+...|... +..++- ..+ .+.|.. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5431 12367788888877763 356544333333344444322 222222 111 133322 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 492 QKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+--.+..++.+..-.|+.+.|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2334556777778888888888888887644
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.00083 Score=40.53 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHhhhccCCCCCCcccccccccccCCCchhh
Q 006632 539 LERLYHKEATTASYPNLLQIPNVVSSDQKGSAAA 572 (637)
Q Consensus 539 ~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~ 572 (637)
.+++++++|+++. ++..||++|...|++++|.
T Consensus 2 y~kAie~~P~n~~--a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE--AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH--HHHHHHHHHHHCcCHHhhc
Confidence 4788999999876 5789999999999999986
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.19 Score=46.21 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006632 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
-++.++++|..+|+.||.++-..+++++++.|..
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 4788899999999999999999999999888763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.29 Score=48.90 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=58.0
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----VTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
..+.+...|+.+...|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567888999999999999999999999998875 4542 46899999999999999999999998875
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.081 Score=52.71 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006632 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 446788999999999999999999999999886 4553 469999999999999999999999999852 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHHCCC
Q 006632 461 FETLMW--GYSEARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 461 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 489 (637)
|..+.. .+..-....+..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122233455666666666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=43.77 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006632 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
...-+...|++++|..+|+-+...+.. |..-|..|..+|-..+.+++|+..|......+.. |+..+-.....+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344466899999999999999876543 6777888999999999999999999887543322 33345567888999999
Q ss_pred HHHHHHHHHHHhhh
Q 006632 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
.+.|+..|+.+..+
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.5 Score=43.72 Aligned_cols=389 Identities=12% Similarity=0.040 Sum_probs=201.0
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
...|+.|+.---...+.+.+..+++.++.. .|... -|-....-=.+.|..+.+.++|++.+. +++.....|.....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 344555555444444445566666666642 34433 233333333455667777777777664 34555556655554
Q ss_pred HHH-hcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---
Q 006632 151 AFS-ESGNMEEAMDTFWKMKES-GLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC--- 224 (637)
Q Consensus 151 ~~~-~~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--- 224 (637)
.+. ..|+.+.....|+..... |.. .+...|...|..-..++++.....+++++.+. | ..-++....-|.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHH
Confidence 443 345666666666665543 211 13445666666666666677777777766653 1 111222111111
Q ss_pred h------cCCHHHHHHHHHHHHH--------------------CCCCCCH--HHHHHHHH-------HHHHcCCHHHHHH
Q 006632 225 N------EKNITEAWNVMHKMAA--------------------SGMKPDV--VTYNTIAT-------AYAQNGEADQAEE 269 (637)
Q Consensus 225 ~------~g~~~~A~~~~~~~~~--------------------~g~~~~~--~~~~~li~-------~~~~~g~~~~A~~ 269 (637)
+ ....+++.++-..... .+-+.+. ...+.+.. .+-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 1122222222211111 0000000 01111111 1111222223333
Q ss_pred HHHHHHhC---CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006632 270 VIVEMEHN---GV----QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 270 ~~~~~~~~---~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.|+.-.+. .+ +++..+|..-++.-...|+.+...-+|+...--- ..-...|--.+.-....|+.+.+..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 33333221 11 2245678888888888999999999988876311 1112234334444444588888887777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCC
Q 006632 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAE---ELLMTMIESG 418 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 418 (637)
...+.-.+..+.+--.-....-..|++..|..+++.+...- |+. .+-..-+.+..+.|..+.+. .++......
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 66554443333332222233456789999999999988763 432 23333345566788888877 333333322
Q ss_pred CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006632 419 FHPNVVIFTTIISG-----WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 419 ~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.-+..+...+..- +...++.+.|..++.++.+. .+++...|..++..+...+..
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 2233333333222 34568899999999999875 445667788888877666543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.033 Score=41.54 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+++.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555554
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.2 Score=41.60 Aligned_cols=311 Identities=15% Similarity=0.168 Sum_probs=197.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHH
Q 006632 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF--SESGNMEEAM 162 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~ 162 (637)
.+..+...|..-... ..|..|-.++ ...|+-..|.++-.+..+. +..|......|+.+- .-.|+.+.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344556666655431 1234443333 3457888888877765432 244544455555443 3569999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 163 DTFWKMKESGLTPTTSTYNTLIKG----YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+-|+.|.. |+.+-..=+++ --+.|..+.|...-+...... +.-...+...+...+..|+++.|+++++.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999986 44443332322 246788999999888887653 34467889999999999999999999988
Q ss_pred HHHCC-CCCCHHH--HHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 239 MAASG-MKPDVVT--YNTIATAYA---QNGEADQAEEVIVEMEHNGVQPNGRTC-GIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-+... +.++..- -..|+.+-. -.-+...|...-.+..+ +.||..-- ..-...+.+.|+..++-.+++.+-+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 76543 3444322 223333221 12345566665555544 35554332 2345788999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHH---hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM---KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
.. |.+..+...+ +.+.| +.+..-++.. .... +.+......+..+-...|++..|..--+...+. .|..
T Consensus 292 ~e--PHP~ia~lY~--~ar~g--dta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre 362 (531)
T COG3898 292 AE--PHPDIALLYV--RARSG--DTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE 362 (531)
T ss_pred cC--CChHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence 74 4443333222 33444 3444444433 2222 235566667777778889999888877776664 6788
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCC
Q 006632 389 HAYSILAKGYVR-EQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 389 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
..|-.|.+.-.. .|+-.++...+-+.++..-.|+
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 888888887654 4999999999999987643343
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.24 Score=45.77 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH-HHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK-STFLLLA 500 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~-~~~~~l~ 500 (637)
.|+.-+. +.+.|++.+|...|...++..+. -....+-.|..++...|++++|..+|..+. +++-.|.. +.+.-++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 44567788888888887765311 112345567788888888888888887774 45555553 6788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 501 EARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 501 ~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
....+.|+.++|...++++..+.|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 8888889999999998888877663
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.92 Score=36.79 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
.-...-++...+.|.-+.-.++++++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334445566677777777777777766533 567777777777777777777777777777776653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.6 Score=41.84 Aligned_cols=402 Identities=11% Similarity=0.096 Sum_probs=205.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 93 AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESG 172 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 172 (637)
++=+++.+ .+.|..+|-.|+.-+..++..+...+++++|..- ++--..+|..-+++-....++.....+|.+.....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44455554 2558899999999999999999999999998753 34455678888887777889999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH---------hcCCHHHHHHHH
Q 006632 173 LTPTTSTYNTLIKGYGIAGKP------EESVKLLDLMSREGNVK-PNLRTYNVLVRAWC---------NEKNITEAWNVM 236 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~---------~~g~~~~A~~~~ 236 (637)
. +...|...+.---+.+.. ....+.|+-......+. .....|+..+...- .+.+++...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 466677666544443311 11122333333211122 23445555544332 233455666667
Q ss_pred HHHHHCCCCCCHHHHHH------HHHHHHH-------cCCHHHHHHHHHHHHh--CCCC----CChhhHHHH--------
Q 006632 237 HKMAASGMKPDVVTYNT------IATAYAQ-------NGEADQAEEVIVEMEH--NGVQ----PNGRTCGII-------- 289 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~------li~~~~~-------~g~~~~A~~~~~~~~~--~~~~----~~~~~~~~l-------- 289 (637)
.+|+..-+..=...|+- =++-... .--+-.|...++++.. .|.. .+..+++..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 77765322111122221 1111000 0113345555555432 1221 112222221
Q ss_pred ---HHHHHhc-----CC-HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHH
Q 006632 290 ---ISGYCKE-----GK-IKE-ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 290 ---i~~~~~~-----g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
|.--... |+ ... .--++++.... +.-...+|----.-+...++.+.|.......... .|. .-..+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 1100000 00 000 00111111111 0112222222222233344444444444332221 122 11112
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------H---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV------R---EQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...|.-..+-+.....|+.... .|..-|. . .|+++...+++-+-+ ..=..+|...+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~ 404 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHL 404 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHH
Confidence 2222223333333333333221 1111111 0 223322222221111 22356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q 006632 431 SGWCSDGSMDRAIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGL 508 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 508 (637)
..-.+..-++.|..+|-+..+.+ +.++...+.+++.-+ ..|+..-|..+|+.-.. .-||...|. -.++-+.+.|+
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCc
Confidence 88888888999999999999887 566777888888755 46888899999987443 345655444 56677788899
Q ss_pred HHHHHHHHHHHhhh
Q 006632 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
-..|..+|++..++
T Consensus 482 e~naraLFetsv~r 495 (660)
T COG5107 482 EENARALFETSVER 495 (660)
T ss_pred HHHHHHHHHHhHHH
Confidence 99999999876544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.25 Score=40.54 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006632 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
..|+..+..+++.+|+..|++..|+++.+...+.-+++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445666666666666666666666666666666555555566666666544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.2 Score=46.33 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhH
Q 006632 401 EQEPEKAEELLMTMIESGFHPNVVIFTT-IISGWCSDGSMDRAIEVFDKMCEHG---VSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
....+.|.+++..+.+. -|+...|.. -...+...|++++|++.|++..... .......+--+...+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888876 466555543 3445667888888888888765321 11123445566777788889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHhhhh
Q 006632 477 AEEILQIMKAFGVHPQKSTFLLLA-EARRATGLT-------KEAKRILSKIKNKE 523 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~-------~eA~~~~~~~~~~~ 523 (637)
|.+.|..+.+.. ......|.-+. -++...|+. ++|.+++.+++...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999888887632 22344455333 345666777 88888888887553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.4 Score=39.81 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=68.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.....|++.+|..+|......... +...-..++.+|...|+.+.|..++..++.... .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 344556666666666665554332 344555556666666666666666666554320 001111112233333333333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCC
Q 006632 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-QPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 298 (637)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. ..|...-..+++.+.-.|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333221 12444555566666666666666665555443311 1234455556666655553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.53 Score=46.04 Aligned_cols=139 Identities=10% Similarity=-0.015 Sum_probs=71.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
.+.|.+.|++..|...|++.... -... +.-+.++..... ..-..+++.|...|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 35677888888888888876541 0000 000001111100 11123455556666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT-EAWNVMH 237 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~ 237 (637)
..|++.-.+....+.. |+....--..+|...|+++.|+..|.++.+.. |.|-..-+-|+.+--+..... ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665432 55555556666666666666666666666643 223333333333333333332 3355666
Q ss_pred HHHH
Q 006632 238 KMAA 241 (637)
Q Consensus 238 ~~~~ 241 (637)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.1 Score=38.84 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 144 FFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m 168 (637)
.++....+|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4444455555555555554444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.4 Score=39.41 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHc
Q 006632 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~ 506 (637)
...|+..+..+++.+|+..|++..|+++.+... .+++..+...|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 355777788888888888888888888877764 577777777777777554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.73 Score=37.23 Aligned_cols=93 Identities=18% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI---FFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~ 155 (637)
.-+++..|+++.|++.|.+.+.. .+..+..||.-..++.-+|+.++|+.-+.+.++..-+.... .|..-...|-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34667889999999999988864 23478889999999999999999999888887754233332 233334567778
Q ss_pred CCHHHHHHHHHHHHHCC
Q 006632 156 GNMEEAMDTFWKMKESG 172 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~ 172 (637)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.28 E-value=4.9 Score=42.69 Aligned_cols=322 Identities=13% Similarity=0.118 Sum_probs=176.1
Q ss_pred HCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHC
Q 006632 170 ESGLTPTTSTYN-----TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN--ITEAWNVMHKMAAS 242 (637)
Q Consensus 170 ~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~ 242 (637)
..|++.+..-|. .+|.-+...+.+..|+++-..+.... ......|.....-+.+..+ -+++.+.+++=...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 346665555554 45777788899999999988775321 1124566666666666532 22333333332222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006632 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL 318 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 318 (637)
.. -+..+|..+.+-....|+++.|..+++.-...+.. .+..-+..-+.-..+.|+.+-...++-.+... .+.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 12 35567888888888999999999887543221110 01112223334444555555555555544432 111
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-H----HCCCCCCHHHHHH
Q 006632 319 VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM-G----KAGIKPDAHAYSI 393 (637)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~~~~~ 393 (637)
..+... ..+...|..+|.++.+.. |.. .+-+.|.+..+....-.+.-+- . ..+..|+ ...
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 111111 122344556666554421 111 1222233333332222222111 0 1122233 333
Q ss_pred HHHHHHHcCCHH----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 394 LAKGYVREQEPE----------KAEELLMTMIE-SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 394 l~~~~~~~g~~~----------~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
....+.+..... .-+++.+.+.. .+..-.-.+.+--+..+...|+..+|.++-.+..- ||-..|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHH
Confidence 444444443321 12222233322 12233344566667778889999999988776642 7888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-+.+++..+++++-.++-+++. .+.-|.-.+.+|.++|+.+||.+++-++...
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 88999999999988776655543 1334666889999999999999999988533
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.58 Score=45.76 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEAR 503 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~ 503 (637)
++..+..+|.+.+++.+|++.-.+.++.+. +|...+-.-..+|...|.++.|+..|+++++ +.|+..... .++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 344455555555555555555555555432 2444444455555555555555555555555 445443322 233222
Q ss_pred HHcCCH-HHHHHHHHHHhhh
Q 006632 504 RATGLT-KEAKRILSKIKNK 522 (637)
Q Consensus 504 ~~~g~~-~eA~~~~~~~~~~ 522 (637)
.+.... +...+++..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 222222 2335555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.86 Score=45.77 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 403 EPEKAEELLMTMIES-GFHPN-VVIFTTIISGWCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+.. |+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 356788899998821 12444 4445444444332 23466788888889887654 888888889889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 472 RQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
|+.+.|...|++... +.|+.. .|......+.-+|+.++|.+.+++.....|.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999999877 678754 6777777888999999999999998777553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.00 E-value=6.4 Score=42.46 Aligned_cols=177 Identities=11% Similarity=0.102 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLA----ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
....-+..+.+...++-|+.+-..- ..+..+...+.+ -+.+.|++++|..-|-+.+..- .| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 3445688889999999998876654 234444444444 3457799999998887665431 22 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChH
Confidence 5566667777888889999998876 67778889999999999888777766554 3312112 34455555566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
++|..+-.+... ....... .+...+++++|++.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 666555444321 2222222 233456666666665543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.6 Score=36.81 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=19.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI 119 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 119 (637)
.++..+.+.+.+......++.+...+ ..++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555544433 2344444444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.1 Score=37.74 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006632 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
.++..+...+........++.+.+.+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34445555555555555555555544 24455555555555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.7 Score=43.65 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWGY 468 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~ 468 (637)
|.+..+-+...+.+++|.-.|+..-+ ..-.+.+|..+|++++|+.+..++... -|.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33344444455666666655554422 122355666677777777776666431 1222 224566677
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
...++.-+|-++..+... .|. ..+..|+.+-.+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 777777777776654431 221 2333445555555555554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.7 Score=40.74 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=103.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006632 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
.......|++..|..+|+...... +.+....-.+...|...|+++.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567788888888888887765 4456667778888888888888888888876542221222223345666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM-KPDVVTYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 271 (637)
.+...+-.+.-.. |.|...-..+...+...|+.++|++.+-.+.+++. .-|...-..|+..+.-.|.-+.+...+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6666666665542 45777888888888889999988888777765421 224556667888877777555444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.1 Score=43.07 Aligned_cols=127 Identities=15% Similarity=0.088 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-H--
Q 006632 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIK-----PDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNV-V-- 424 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~-- 424 (637)
..+..++...+.++++++.|+...+.... ....++..|...|.+..++++|.-+..+..+. ++ .|. .
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHH
Confidence 34556667777788888887776542111 12467777888888888888877766655431 21 111 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 425 ---IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-KTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 425 ---~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+.-.|..++...|....|.+.-++..+ .|-.|.. .....+...|...|+.+.|+.-|+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222344456677777777777766543 3432222 24556677777778777777666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.1 Score=43.31 Aligned_cols=130 Identities=17% Similarity=0.173 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHH
Q 006632 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS------TYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 145 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
...++....=.|+-+.+++.+.+..+.+--..+. .|+.++..++. ....+.|.++++.+...- |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555556678888888887766542111222 23333333332 345677888888887753 5555
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 215 TYNVL-VRAWCNEKNITEAWNVMHKMAASGM---KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 215 ~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|... .+.+...|++++|++.|++...... +.....+--+.-.+.-..+|++|...|..+.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 55443 4556677888888888886553110 111223334455566667777777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.1 Score=45.92 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=83.2
Q ss_pred HHHHHHcCChhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 79 MNSLIERGKPQEAQAIFN--NLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
.....-+|+++++.++.+ ++.. .+ +..-.+.+++-+-+.|-.+.|+.+- .|.. .-.....++|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcC
Confidence 344455677777766664 2221 11 2444666667777777777776653 2322 1234455677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006632 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
+++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.
T Consensus 333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHH
Confidence 777776655443 2556777777777777777777777765432 556666666677766666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
+.....| -++....++.-.|+.++..+++.
T Consensus 397 ~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 397 KIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555543 13334444555566666665553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.5 Score=42.13 Aligned_cols=166 Identities=12% Similarity=0.048 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 006632 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKA-GIKP---DAHAYSILAKGYVREQEPEKAEELLMTMIESGFH-----PNVV 424 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 424 (637)
..|..+..++.+..++.+++.+-..-... |..| .-...-++..+..-.+.++++++.|+...+.... ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555556666666666666655543321 2222 1234445677777888899999999887653111 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCC
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL------KTFETLMWGYSEARQPWRAEEILQIMK----AFGVH 490 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~ 490 (637)
++..|.+.|.+..|+++|+-+..++.+ .++. |. .....+.-++...|..-+|.+.-++.. ..|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 788899999999999999988877654 2332 22 123345567888899888888887764 45544
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 491 PQKS-TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 491 p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|... ...++.|.|...|+.+.|.+-++++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 4432 45688899999999999988888763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.2 Score=43.06 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
..+..++.+.|+.++|++.|++|.+..... +......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345555556666666666666665432111 2224555666666666666666666553
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=3.5 Score=37.76 Aligned_cols=124 Identities=17% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006632 397 GYVREQEPEKAEELLMTMIESGF--HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.+...|+++.|...+.+...... ......+......+...++.+.|...+.++...........+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555533110 0122222223333445555555555555555431110234455555555555555
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 475 WRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++|...+..... ..|+ ...+..+...+...|..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566555555543 2232 223333333333445555555555554433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.81 Score=36.95 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHhcCC
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPNL---KTFETLMWGYSEARQ 473 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~---~~~~~l~~~~~~~g~ 473 (637)
.+..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+. |.+ .. ..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 445555555555555555431 344555555555555555555555555555543 211 11 122223334444555
Q ss_pred hhHHHHHHHHHHHCC
Q 006632 474 PWRAEEILQIMKAFG 488 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g 488 (637)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.18 Score=32.51 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
+..+...|...|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.5 Score=41.71 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=110.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCh
Q 006632 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---GLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~ 193 (637)
.-..|+..+|-..++++++. .|.|...+...=.+|.-.|+...-...++++... +++-.+.+-..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34577888888888888875 4778888888888899999988888888888754 2222233334445566788999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 006632 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQNGEADQAEEV 270 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~ 270 (637)
++|.+.-++..+.+ +.|..+-.++...+--.++..++.+...+-...=-..+ ..-|=...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999888765 56777778888888889999999888765432210111 12222344456667999999999
Q ss_pred HHHHH
Q 006632 271 IVEME 275 (637)
Q Consensus 271 ~~~~~ 275 (637)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 97643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.19 E-value=1 Score=41.70 Aligned_cols=82 Identities=18% Similarity=0.358 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 124 NSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----------------NMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
+-.-..++.|.+.|+..|..+|+.|+..+-+-. +-+-+++++++|...|+.||..+-..|+.++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 333334445555555555555555554433211 2245667777777777777777777777777
Q ss_pred HhcCCh-HHHHHHHHHHHh
Q 006632 188 GIAGKP-EESVKLLDLMSR 205 (637)
Q Consensus 188 ~~~g~~-~~A~~~~~~m~~ 205 (637)
.+.+.. .+..++.-.|++
T Consensus 169 Gr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 169 GRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ccccccHHHHHHHHHhhhh
Confidence 666543 344455555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.14 E-value=5.7 Score=40.33 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=84.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSL-VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
.+|...-+..+++.-++.-.+.++ +.||- ..|..|.. -......++.++|++..+.| +. .+.+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-E~----------~lg~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-EA----------SLGKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-HH----------hhchh
Confidence 455555666777777777777665 33432 23322221 12334677888888776654 10 00000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
......-..++....+...+-..+-..+....-+.|+.++|++.|.+|.+......+......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00000011112222222222334445566667788899999999988876531112345677788888888888888888
Q ss_pred HHHHHHC
Q 006632 236 MHKMAAS 242 (637)
Q Consensus 236 ~~~~~~~ 242 (637)
+.+..+.
T Consensus 318 L~kYdDi 324 (539)
T PF04184_consen 318 LAKYDDI 324 (539)
T ss_pred HHHhccc
Confidence 8887543
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.5 Score=45.06 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
.+.+++.+-+.|.++.|+++-. |+. .-.....+.|+++.|.++..+ ..+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 6778888889999999987643 332 233445688999999876532 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.....+ -+|....++.-.|+.++..+
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988764 6778888889999988888887777665 26666777777888888887
Q ss_pred HHHHH
Q 006632 235 VMHKM 239 (637)
Q Consensus 235 ~~~~~ 239 (637)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=4.6 Score=36.80 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.|..-..+|...+++++|...+.+..+. ...+...|.+ ...++.|.-+.+++.+.. --+..++.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444455666667777777776666532 1222222221 122345555555555431 11234556666777
Q ss_pred hcCChHHHHHHHHHHH
Q 006632 189 IAGKPEESVKLLDLMS 204 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~ 204 (637)
.+|.++.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 7777777766666553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=5.3 Score=36.52 Aligned_cols=199 Identities=16% Similarity=0.072 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 006632 284 RTCGIIISGYCKEGKIKEALRFARTMKEY-GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMN- 361 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 361 (637)
.........+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555555556666655555555431 113333444445555555555666666666655533222 111222222
Q ss_pred HHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006632 362 AWSTAGFMDKCKEIFDDMGKAGI--KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGWCSDGS 438 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 438 (637)
.+...|+++.+...+........ ......+......+...++.+.+...+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777777777777777755221 1233344444444667788888888888877653 33 36677777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 439 MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
++.|...+....... |+ ...+..+...+...|..+++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888887642 33 34455555555566677888877777655
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.72 E-value=8.3 Score=38.60 Aligned_cols=408 Identities=12% Similarity=0.127 Sum_probs=204.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHC--CCC-----------
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA--LTIQKRFNSIHSIMSQVEEN--GMD----------- 139 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~--~~~----------- 139 (637)
-+.++++|..++ .+.....+..+.+. .| ...|..+..+ +-+.+.++.|.+.+..-... +..
T Consensus 49 ~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 49 GGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred hhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 345666665542 33333333333332 12 1223333333 23566777777766554332 111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC--------C-------hHHHHHH
Q 006632 140 -PDSIFFNAVINAFSESGNMEEAMDTFWKMKESG----LTPTTSTYNTLIKGYGIAG--------K-------PEESVKL 199 (637)
Q Consensus 140 -~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g--------~-------~~~A~~~ 199 (637)
+|...-+..+..+...|++.+++.+++++...= ..-+..+|+.++-.+.+.= . ++.+.-.
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 222233455666777888888888877776542 2356777777555554321 0 1111111
Q ss_pred HHHHHhcC-----CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 006632 200 LDLMSREG-----NVKPNLRTYNVLVRAWCN--EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 200 ~~~m~~~~-----~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 271 (637)
..+|.... .+-|-......++.-..- ..+..--.+++......-+.|+-. +...|..-+.+ +.+++..+-
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 12221110 011222222222221111 111111222222222222344422 22233333333 445555544
Q ss_pred HHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHhh
Q 006632 272 VEMEHNGVQ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFN-------LLIKGFVE----IMDRDG 336 (637)
Q Consensus 272 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~ll~~~~~----~~~~~~ 336 (637)
+.+....+. .=..++..++....+.++..+|.+.+.-+... .|+...-. .+.+..+. .-+...
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 444332111 12356778888889999999999888877654 33332111 11222221 111233
Q ss_pred HHHHHHHHhhCCCCCCH-HH-HHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHH---HcCCHHH
Q 006632 337 VDEVLALMKEFRVNPDV-IT-YSTIMNAWSTAGF-MDKCKEIFDDMGKAGIKPDAHAYSILAK----GYV---REQEPEK 406 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~g~~~~ 406 (637)
-..+++.....++.... +. ...-..-+.+.|. -++|+.+++.+.+-. +-|..+-|.+.. .|. ....+..
T Consensus 361 yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34455555554432111 11 1112233455565 889999999988742 234444333322 232 2334455
Q ss_pred HHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006632 407 AEELLMTMIESGFHPNVV----IFTTIISG--WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
-.++-+-+.+.|++|-.+ .-|.+..+ +..+|++.++.-.-.=+.+ +.|++.+|..++-.+....+++||.++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555566677766433 34444444 4578999988655544444 779999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHH
Q 006632 481 LQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~ 498 (637)
+.. ++|+..++..
T Consensus 518 l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 518 LQK-----LPPNERMRDS 530 (549)
T ss_pred HHh-----CCCchhhHHH
Confidence 886 5677766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.27 Score=31.65 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 180 YNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.44 E-value=7.8 Score=37.42 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 006632 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVR--E----QEPEKAEELLMTMIESGF---HPNVVIFTTIISGWCSDGS-- 438 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 438 (637)
++...+++.+.+.|+..+..+|-+....... . .....|..+|+.|.+... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666666555444432222221 1 123456667777766421 2334444444433 2222
Q ss_pred --HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 439 --MDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQ--PWRAEEILQIMKAFGVHPQKSTFLLLAE 501 (637)
Q Consensus 439 --~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 501 (637)
.+.+..+|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+.|+++...+|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 344566666666666554332 23333332222221 3356667777777777777777665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.32 E-value=2.8 Score=34.97 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=26.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
.....+.|++.+|++.|+.+..+-.- -...+-..++.++.+.++++.|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444555555555555555543110 01223334444455555555555555554444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.24 E-value=14 Score=39.63 Aligned_cols=178 Identities=12% Similarity=0.073 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Q 006632 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRA-----WCNEKNITEAWNVMHKMAA-------SGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~ 260 (637)
...|.+.++.....| +...-..+..+ +....+.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 467888888887766 34443333333 3456788999999888866 44 33355567777776
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--H
Q 006632 261 NG-----EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE---GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV--E 330 (637)
Q Consensus 261 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~ 330 (637)
.. +.+.|..++.+..+.|. |+... .+...|... .+...|.++|......|. +....+.+++-... -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 43 56778888888877764 33332 233333322 356788888888887762 22222222221111 2
Q ss_pred cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..+...|...+++.-+.+. |....-...+..+.. +.++.+...+..+...|
T Consensus 377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2355667777777766662 222222222233333 66666666666655554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.6 Score=40.60 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHH
Q 006632 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP-NLRTYNVLV 220 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li 220 (637)
.|+.-+..| +.|++..|...|...++..+. -....+..|...+...|++++|..+|..+.+...-.| -...+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655543 667788888888877775422 1233455577777788888888888877776532112 246666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006632 221 RAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.3 Score=41.76 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLKTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 464 (637)
++..++..+..+|+++.+...++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666666666666666654 55666666667777777776666666666543 3555655554444
Q ss_pred HHH
Q 006632 465 MWG 467 (637)
Q Consensus 465 ~~~ 467 (637)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=3 Score=39.76 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHH----HHHHHHHHcCChh
Q 006632 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYS----TIMNAWSTAGFMD 370 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 370 (637)
..|++.+|-..++++.+. .|.|...+.-.=.+|...|+...-...++.+... ..+|...|. ...-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666666666666654 2556666666666777777777666666666543 112322222 2223344667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006632 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN----VVIFTTIISGWCSDGSMDRAIEVF 446 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 446 (637)
+|++.-++..+.+ +.|.-.-.++...+.-.|+..++.+...+-... .... ..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777776666554 345555566666666677777776665544321 0000 011112222344456677777777
Q ss_pred HHH
Q 006632 447 DKM 449 (637)
Q Consensus 447 ~~m 449 (637)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.43 E-value=6.3 Score=33.65 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+.++.+++..+++.+....+. ....-..-...++..|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445556666666655544321 1111222223344556666666666665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.43 E-value=6.5 Score=33.81 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=27.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 153 SESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
++.+..++|+..|..+.+.|..--++ ...-+.....+.|+...|+..|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34555666666666666654331111 1122233344556666666666666543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.9 Score=40.69 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHH
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTFL 497 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 497 (637)
..++..++..+...|+.+.+.+.++++..... -|...|..++.+|...|+...|+..|+.+. +.|+.|......
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45677788889999999999999999998754 378899999999999999999999998875 478888876655
Q ss_pred HHHHH
Q 006632 498 LLAEA 502 (637)
Q Consensus 498 ~l~~~ 502 (637)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.08 E-value=5.4 Score=33.29 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
.+-.-.....+.|+++.|.+.|+.+..+- +. .....-.|+.+|.+.++++.|...+++.++..+.....-|-..+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33344455568899999999999998762 32 345677789999999999999999999999876544455655555
Q ss_pred HHHhc
Q 006632 186 GYGIA 190 (637)
Q Consensus 186 ~~~~~ 190 (637)
+++..
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=9.1 Score=34.29 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006632 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++.-|.+-|...-+.+.-.|-...|.-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 3346788888888889999999999999999876553333334444433 468888888877777665422222333433
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------hhhHHHH
Q 006632 219 LVRAWCNEKNITEAWNVM-HKMAASGMKPDVVTYNT-IATAYAQNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~-~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
+.. ..-++.+|..-+ ++... .|..-|.. ++..|...=..+. +++++... -..+ ..+|--+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 332 334455554433 33332 24333332 3333332222222 22232221 1111 2345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006632 290 ISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..-|...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66677778888888877776643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=11 Score=34.85 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 258 YAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
-.+.|++++|...|+.+....+ +-...+...++-++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456777777777766664322 112334444555666677777777777766554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.62 E-value=11 Score=34.83 Aligned_cols=52 Identities=6% Similarity=0.044 Sum_probs=23.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 119 IQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAFSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 171 (637)
+.|++++|...|+.+...- +- ...+.-.++-++-+.++++.|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4455555555555554331 11 1223333444444555555555555554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.5 Score=37.91 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 439 MDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQ-----------PWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
+++|+.-|++.+. +.|+. .++..+..++...+. +++|.+.|++..+ .+|+.+.|..-+.+.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3444555555555 45665 477778777766552 3455555555555 678888887666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.26 E-value=7.1 Score=31.89 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006632 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
.......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444555555666666666666665542 245555555666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.24 E-value=21 Score=37.25 Aligned_cols=389 Identities=12% Similarity=0.072 Sum_probs=223.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI-FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+-..|..++.---...+.+.+..+++.++.. -|... .|......=.+.|..+.+.++|++-+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4445666654443344456677777777743 34443 5667777777889999999999998874 666777888777
Q ss_pred HHHH-hcCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 006632 185 KGYG-IAGKPEESVKLLDLMSREGNV-KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-- 260 (637)
Q Consensus 185 ~~~~-~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 260 (637)
..+. ..|+.+...+.|+.....-+. -.+...|-..|..-..++++.....++++.++. ....++..-.-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6554 457888888889888764321 134567888888888999999999999999864 22233322222221
Q ss_pred -------cCCHHHHHHHHHHHHh--------------------CCCCCCh--hhHHHHH-------HHHHhcCCHHHHHH
Q 006632 261 -------NGEADQAEEVIVEMEH--------------------NGVQPNG--RTCGIII-------SGYCKEGKIKEALR 304 (637)
Q Consensus 261 -------~g~~~~A~~~~~~~~~--------------------~~~~~~~--~~~~~li-------~~~~~~g~~~~A~~ 304 (637)
....+++.++-..... .+-+.+. ...+.+. .+|-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1223333332222211 0000000 0111111 11222222333333
Q ss_pred HHHHHHHCC---C----CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006632 305 FARTMKEYG---V----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 305 ~~~~~~~~~---~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
.|+.-++.. + +++..+|..-+.--...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 344333221 1 234568888888888899999888888776431 11223344444444455599888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHC
Q 006632 378 DMGKAGIKPDAHAYSILAKG-YVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAI---EVFDKMCEH 452 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~ 452 (637)
...+-..+..+. ...+-.. .-..|+++.|..+++.+...- |+.+ .-..-+....+.|+.+.+. .++....+.
T Consensus 356 ~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 356 RACKIHVKKTPI-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred hhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 766543332222 2222222 345689999999999998762 4433 2233344456778888777 333333221
Q ss_pred CCCCCHHHHHHH----HH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006632 453 GVSPNLKTFETL----MW-GYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 453 ~~~p~~~~~~~l----~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
.. +..+...+ .+ .+.-.++.+.|..++.++.+. +.++...|..+++.+...+.
T Consensus 433 ~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 433 KE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 11 22222222 22 233467888899999888762 33345567788877766653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.97 E-value=9.6 Score=32.84 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=53.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHHhcCCH
Q 006632 83 IERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI-FFNAVI--NAFSESGNM 158 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll--~~~~~~g~~ 158 (637)
++.+..++|+.-|..+...|...-+. ..-......+..|+...|...|+++-.....|-.. -...|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666666666666554432111 11112233344555566666665554432222211 111111 122334455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
++.....+-+...+-+.-...-..|.-+-.+.|++..|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 54444444443332222223334444444455555555555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.72 E-value=16 Score=35.05 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 354 ITYSTIMNAWSTAGFMD---KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566777777766544 455566666443 22235555556666777888889999999888752 21334444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HH----HHHHHHHHhcCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 006632 431 SGW---CSDGSMDRAIEVFDKMCEHGVSPNLK-TF----ETLMWGYSEARQ------PWRAEEILQIMKA-FGVHPQKST 495 (637)
Q Consensus 431 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~----~~l~~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~ 495 (637)
..+ ... ....|...++.+....+.|... .. ...+......+. .+...++++...+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 333 3456666666666443444442 11 111112222221 3333444443322 223333333
Q ss_pred HHHH-------HHHHHHcCCHHHHHHHHHHH
Q 006632 496 FLLL-------AEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 496 ~~~l-------~~~~~~~g~~~eA~~~~~~~ 519 (637)
-.++ +..+.+++++++|.++++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 35577889999999998754
|
It is also involved in sporulation []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.68 Score=43.95 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006632 432 GWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.|.++|.+++|+..|...+.. .| |++++..-..+|.+..++..|..-.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 355666666666666555543 23 55555555556665555554444333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.63 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555666666666665553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.37 Score=28.92 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 006632 420 HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A 442 (637)
|.|..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.76 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.19 E-value=4.3 Score=35.81 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----
Q 006632 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQPWRAEEILQIMKA---FGVHPQKS---- 494 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~---- 494 (637)
..+..+..-|.+.|+.+.|++.|.++.+....|... .+..++..+...|++..+.....+... .|-.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356667777777888888888887777654444433 466677777777787777777666642 22112211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006632 495 TFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
.|..+ .+...|++.+|-+.|-....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCc
Confidence 22222 23456778888777766643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.17 E-value=18 Score=34.73 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHhh---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 320 IFNLLIKGFVEIMDRDG---VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK 396 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 396 (637)
++..++.+|...+..+. |..+++.+..... ..+.++..-+..+.+.++.+.+.+++..|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 55666667776666544 4444445544332 224444455566666777888888888887652 212233443333
Q ss_pred HH---HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HH-HH---HHHHhcCC------HHHHHHHHHHHHH-CCCCCCHHHH
Q 006632 397 GY---VREQEPEKAEELLMTMIESGFHPNVVIF-TT-II---SGWCSDGS------MDRAIEVFDKMCE-HGVSPNLKTF 461 (637)
Q Consensus 397 ~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~-li---~~~~~~g~------~~~A~~~~~~m~~-~~~~p~~~~~ 461 (637)
.+ ... ....|...+..+....+.|....| .. ++ ....+.++ ++....+++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 332 334555555555443334433211 11 11 11112111 4444445553332 2233344333
Q ss_pred HHH-------HHHHHhcCChhHHHHHHHHH
Q 006632 462 ETL-------MWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 462 ~~l-------~~~~~~~g~~~~A~~~~~~m 484 (637)
.++ +..+.+.+++++|.+.|+-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 222 33456788999999988754
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.51 E-value=24 Score=35.17 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP---NVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
...+|..++..+.+.|.++.|...+.++...+... ++...-.-.......|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666777777777777777666532111 223333334445556666777776666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.89 Score=27.64 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
|+.|.+.|.+.|++++|+.+|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777777777776643
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.20 E-value=28 Score=35.54 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA-LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.|+..|..-+..+-+.+.+.+.-.+|.+|+... +.++..|-....- +-...+.+.|..+|...++.+ +.++..|-..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHH
Confidence 466677777666666666777777777776631 2234444333222 222333677777777766654 3344444443
Q ss_pred H
Q 006632 149 I 149 (637)
Q Consensus 149 l 149 (637)
.
T Consensus 181 f 181 (568)
T KOG2396|consen 181 F 181 (568)
T ss_pred H
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=22 Score=34.14 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 352 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
+..+-...+.++.+.++ +.+...+-.+.+ .++..+-...+.++.+.+ .-..+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444445444444 234444444433 233333333344443332 12334444444442 33444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 55555555 34444444444321 1 123344455555543 4555555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.3 Score=26.32 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|..++.++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.4 Score=26.03 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.66 E-value=9.4 Score=33.68 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 252 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444444444444444443322111 122333344444444444444444333
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.32 E-value=13 Score=32.88 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=41.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
+.+.|++++|..-|.+.+..- ++.. +.|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 455566666666666555541 2211 12333333455555555555555555553311 1123333344555555
Q ss_pred ChhHHHHHHHHHHH
Q 006632 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|++-|+++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.99 E-value=2 Score=25.29 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 495 TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.+..+..++...|++++|++.++++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666665444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.98 E-value=34 Score=37.17 Aligned_cols=222 Identities=15% Similarity=0.108 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH---
Q 006632 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWST--- 365 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 365 (637)
...+.-.|+++.|++++-.. .+...+.+.+...+.-| |-+......-..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45566789999999988762 11233444444443332 22221111112222211 11222567788888876
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHH-----------HHHHH---HHHCCCCC-CHHHHH--
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILA-KGYVREQEPEKAE-----------ELLMT---MIESGFHP-NVVIFT-- 427 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-----------~~~~~---~~~~~~~~-~~~~~~-- 427 (637)
..+...|.+.+-.+....-+.....+...+ ......++++.-+ -++++ +. ++.. +.....
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDDEDFLREII 417 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSSSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCcHHHHHHHH
Confidence 356777777776665432211122222222 2222333222211 11111 11 1122 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC-----------hhHHHHHHHHHHHCC-----C
Q 006632 428 -TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW-GYSEARQ-----------PWRAEEILQIMKAFG-----V 489 (637)
Q Consensus 428 -~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~-----------~~~A~~~~~~m~~~g-----~ 489 (637)
....-+...|++++|+.+|.-+.+.. .=....+.++. +...... ...|..+.+.....+ +
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence 23334667888888888887664310 01123343333 2222222 223344333332111 2
Q ss_pred CCC-HHHHHHHHHH-----HHHcCCHHHHHHHHHHHh
Q 006632 490 HPQ-KSTFLLLAEA-----RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 490 ~p~-~~~~~~l~~~-----~~~~g~~~eA~~~~~~~~ 520 (637)
.+. ..++..|+++ +.+.|++++|.+.++++.
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 222 3355555543 578999999999999985
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.95 E-value=20 Score=31.13 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006632 96 NNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTP 175 (637)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 175 (637)
+.+.+.+++|+...+..++..+.+.|++..... ++..++-+|.......+-.+. +....+.++=-.|..+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH----
Confidence 334445566666666666666666666554433 333444444433332221111 1222233332233221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006632 176 TTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
=...+..++..+...|++-+|+++....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555556666666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.84 E-value=31 Score=33.36 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHH
Q 006632 302 ALRFARTMKEYGVHPNLVIFN 322 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~ 322 (637)
.+.+++.|.+.|+..+..++-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 344555555555555544433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.39 E-value=25 Score=31.71 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006632 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKA 382 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 382 (637)
.||--+..-+...|++++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35555666666666666666666665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.22 E-value=68 Score=36.68 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=37.2
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006632 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVIT--YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ 402 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 402 (637)
+.+|..+|++.++..+..++... .+... -..|+.-+...++.-+|-++..+.... ..-.+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44455556666666555554321 12211 134555555666666666555554331 112233345555
Q ss_pred CHHHHHHHHHH
Q 006632 403 EPEKAEELLMT 413 (637)
Q Consensus 403 ~~~~A~~~~~~ 413 (637)
.|++|..+-..
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 56665555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.86 E-value=21 Score=30.52 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 399 VREQEPEKAEELLMTMIESGFHPNVVIF-TTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+.++.+++..++..+.-. .|..... ..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3556677777777666654 3333222 22233456677777777777776553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.022 Score=48.60 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=72.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
+++.+.+.+.+......++.+...+...+....+.++..|++.++.+.....++ ..+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 466677777888888888888766555667778888888888877666666554 1122334456666666676
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006632 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
+++|.-++.++.... ..+..+...++++.|.+.+.+ .++...|..++..+...+
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTST
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcC
Confidence 666666665543211 011112233444444432221 134566776666665544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.50 E-value=11 Score=35.71 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.++++.++..-+..|+-||.++++.+++.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555556666666666666666666666665555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.18 E-value=64 Score=35.38 Aligned_cols=177 Identities=17% Similarity=0.224 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDS--IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
..-+..+.+..-++-|..+-. ..+.+++. .......+-+-+.|++++|...|-+.... +.| ..+|.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 344555556666777776543 23222221 22333344555789999999888666542 222 23566666
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006632 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
...++.+-...++.+.+.| -.+...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 409 daq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777778888888888887 3466667889999999999998777766544 2211 112345677777888888887
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
.+-..... +...... .+-..+++++|++++..+
T Consensus 484 ~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 66544422 2333333 334567888888888766
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.16 E-value=66 Score=35.56 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=54.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHHHHH
Q 006632 153 SESGNMEEAMDTFWKMKESGLTPTT-------STYNTLIK-GYGIAGKPEESVKLLDLMSREG---NVKPNLRTYNVLVR 221 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~~li~ 221 (637)
....++.+|..+..+....-..|+. ..|+.|-. .....|++++|.++.+.....- ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567788888888776554222221 13343322 2234677888888777665431 12234556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006632 222 AWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~ 242 (637)
+..-.|++++|..+..+..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 777888888888887776554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.95 E-value=4.2 Score=31.08 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.-+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456666666667778888888888888888888888888888877644
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.90 E-value=2.5 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006632 73 RSMTKLMNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.84 E-value=28 Score=30.19 Aligned_cols=130 Identities=10% Similarity=0.132 Sum_probs=63.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006632 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.++.+.+.+++|+...+..++..+.+.|++..- ..+.+.++-+|.......+-.+ .+....+.++=-+|..+-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 334445566777777777777777777765543 3334444444544443333222 122333444444443320
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
...+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+|+-
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 013455556666677777777666554221 111223344555555554443344433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.74 E-value=29 Score=36.31 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=84.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 162 (637)
.-.|+++.|-.++-.+. ....+.+++.+.++|-.++|+.+ .+|.... .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 34566666655443332 22345556666666666666543 2332211 22334667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 7665542 456677777777778888777777765542 455666666666666554444444444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
|. + |.-..+|...|+++++.+++..
T Consensus 722 g~--~----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GK--N----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc--c----chHHHHHHHcCCHHHHHHHHHh
Confidence 42 1 2223345566777777766643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.70 E-value=25 Score=29.58 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
.++.+++..+++.|.-..+. ....-..-.-.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666666554322 1111122223345666677777777666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.31 E-value=3.1 Score=25.85 Aligned_cols=27 Identities=11% Similarity=0.397 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 424 VIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
.+++.+...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555666666666666655554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.23 E-value=31 Score=36.04 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
..+.++..+-++|..++|+++ .+|+.- -.....+.|+++.|.++..+ ..+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e------~~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVE------ANSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHh------hcchHHHHHHHHHHh
Confidence 456678888888888888754 333322 12334577899988887654 335677999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.| + .|....+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~-----~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--K-----NNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--c-----cchHHHHHHHcCCHHHHH
Confidence 99999999999987654 6677888888888877666666666655 2 244445677889999998
Q ss_pred HHHHHH
Q 006632 234 NVMHKM 239 (637)
Q Consensus 234 ~~~~~~ 239 (637)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 887654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.75 E-value=4.9 Score=31.05 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666667778899999999999999999999999999888755
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.03 E-value=15 Score=32.83 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCCh
Q 006632 457 NLKTFETLMWGYSEARQP 474 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~ 474 (637)
|+..+.+|++.+.+.|+.
T Consensus 177 n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNY 194 (203)
T ss_pred CHHHHHHHHHHHHHhcch
Confidence 333333333333333333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.52 E-value=12 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 125 SIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 169 (637)
++.+-+..+...++.|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=52 Score=31.60 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006632 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+.++...|.. +|+..+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444442 34444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.36 E-value=16 Score=32.51 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006632 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES---GFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
+.|...|-.+...+.-.++.....|+..|. ..+.+++..++.+..+. +-.+|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443334444444444333 33455555555554432 1134455555555555555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.06 E-value=48 Score=30.92 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCC----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 006632 359 IMNAWSTAGFMDKCKEIFDDMGKAGIK----PD-------AHAYSILAKGYVREQEPEKAEELLMTMIES-GFHPNVVIF 426 (637)
Q Consensus 359 l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 426 (637)
|...|...+.+....++++++...-.. .| ..+|..=|++|..+.+-..-..++++.... .--|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 444455555555555555555432111 11 345556666776666666666666655421 112333333
Q ss_pred HHHHH----HHHhcCCHHHHHHHHHHH
Q 006632 427 TTIIS----GWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 427 ~~li~----~~~~~g~~~~A~~~~~~m 449 (637)
..+-. ...+.|.+++|-.-|-++
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHH
Confidence 22211 234566676665444333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.73 E-value=2.8 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555443
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.35 E-value=15 Score=34.89 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006632 172 GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN--VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
|.+....+...++..-....+++.+...+-++..... ..|+. +-...++.+ -.-+.++++.++..=+.-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4444555555556555556677777777666654210 00110 111122222 2234556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006632 250 TYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+++.+++.+.+.+++..|.++.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777766666655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 4e-17
Identities = 34/363 (9%), Positives = 98/363 (26%), Gaps = 16/363 (4%)
Query: 168 MKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227
+++ +P L++ + + + + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH-SQAQLSGQQQRLLAFFKCCLLTD 141
Query: 228 NITEAWNV---MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284
+ A ++ H + YN + +A+ G + V+ ++ G+ P+
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 285 TCGIIISGYCKEGKIKEAL-RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343
+ + ++ + + R M + G+ + +L+ V +V
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 344 MKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE 403
P + S ++ ++ + + + V
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ-LHMELASRVCVVS 320
Query: 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463
EK + + + + ++ RA+ E V +
Sbjct: 321 VEKPTLPSKEVKHARKTLKTLR-------DQWEKALCRALRETKNRLEREVYEGRFSLYP 373
Query: 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523
+ E +LQ+++A + T L + R ++ +S
Sbjct: 374 FLCLLDEREV---VRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQAL 430
Query: 524 RTN 526
+ +
Sbjct: 431 QNH 433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 7e-15
Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 5/186 (2%)
Query: 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSI--- 129
+ +L+ + QA + + + H +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 130 MSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189
+ +NAV+ ++ G +E + + +K++GLTP +Y ++ G
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 190 AGKPEESV-KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248
+ ++ + L+ MS+EG L VL+ + V + P
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQAL-FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 249 VTYNTI 254
V + +
Sbjct: 272 VNTSKL 277
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 3e-09
Identities = 28/276 (10%), Positives = 71/276 (25%), Gaps = 10/276 (3%)
Query: 5 AEGKAFLQTDDKYQSGSTIVKKGWGQMIPAKKNNPGEKKQL-YSNSKPTDSQPQTHCSFC 63
A + + + P + L + K + Q
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 64 MNKESCRTVRSMTKLMNSLIERGKPQEAQAIFN---NLIEGGHKPSLVTYTTLLAALTIQ 120
+ + + + + A + + +L Y ++ Q
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFW-KMKESGLTPTTST 179
F + ++ V++ G+ PD + + A + ++ +M + GL
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239
L+ A + K+ S + P + T +L + + K+
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL-----RDVYAKDGRVSYPKL 293
Query: 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275
+ + A E+ + +
Sbjct: 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 5e-08
Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 4/157 (2%)
Query: 373 KEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432
+ D +A P + L + + + + ++
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 433 WCSDGSMDRAIEVFDK---MCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV 489
+ A + + L + +M G++ +L ++K G+
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 490 HPQKSTF-LLLAEARRATGLTKEAKRILSKIKNKERT 525
P ++ L R +R L ++ +
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 53/437 (12%), Positives = 128/437 (29%), Gaps = 103/437 (23%)
Query: 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255
S + +D + + T + W ++ K ++ + Y +
Sbjct: 47 SKEEIDHIIMSKD--AVSGTLRLF---WTLLSKQE---EMVQKFVEEVLRIN---YKFLM 95
Query: 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC-----KEGKIKEALRFARTMK 310
+ + + + + + + + + Y K+++AL R
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLKLRQALLELR--- 148
Query: 311 EYGVHPNLVIFNLLIKGFVEIMDRDG----VDEVLALMKEFRVNPDVITYSTIMNAWSTA 366
N++I + G G +V K I + + N S
Sbjct: 149 ---PAKNVLIDGV--LGS-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426
++ +++ + H+ +I + + L +++S + N ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLL- 248
Query: 427 TTIISG-WCSDGSMDRAIEVFDKMC-------EHGVSPNLK-------TFETLMWGYSEA 471
++ + +A F+ C V+ L + + +
Sbjct: 249 --VLLNVQNA-----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 472 RQPWRAEEILQIMKAFGVHPQKSTFLLLAEAR----RATGLTKEAKRI-LSKIKNKERTN 526
+ +L +K PQ L E R + E+ R L+ N + N
Sbjct: 302 ----EVKSLL--LKYLDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 527 EMEAEE--DIPVESLE-----RLYHKEATTASYPNLLQIP---------NVVSSDQKGSA 570
+ + + LE +++ + + +P IP +V+ SD
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 571 AALKKGRMLLRDADSSL 587
L K ++ + S
Sbjct: 409 NKLHKYSLVEKQPKEST 425
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 64/444 (14%), Positives = 137/444 (30%), Gaps = 148/444 (33%)
Query: 62 FCMNKESCRTVRSMTKLMNSLIERGKP----------------QEAQAIFNNLIEG-GHK 104
F +N ++C + ++ +++ L+ + P QA L++ ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 105 PSL-----VTYTTLLAALTIQ-K-----RFNSIHSIMSQV---------EENGMDPD--- 141
L V A + K RF + +S + PD
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 142 SIFFNA------------------VINAFSESGNMEEAMDT--FWK-MKESGLTPT-TST 179
S+ ++ +ES + + + T WK + LT S+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 180 YNTLIKGYGIAGKPEESVKLLDLMS--REGNVK-PNLRTYNVLVRAWCNEKNITEAWNVM 236
N L +P E K+ D +S + P +L W + ++ V+
Sbjct: 363 LNVL--------EPAEYRKMFDRLSVFPP-SAHIP----TILLSLIWFDVIK-SDVMVVV 408
Query: 237 HKMAASGM-----KPDVVTYNTIATAYAQNGEADQA-EEVIVE-------MEHNGVQPNG 283
+K+ + K ++ +I E + A IV+ + + + P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP- 467
Query: 284 RTCGIIISGY-----------CKEGKIKEA-------LRF-ARTMKEYGVHPNLV--IFN 322
+ Y + + RF + ++ N I N
Sbjct: 468 -----YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 323 LLI-----KGFVEIMDRDGVDE-VLALMKEF--RVNPDVIT--YSTIMNAWSTAGFMDKC 372
L K + I D D E ++ + +F ++ ++I Y+ ++ M +
Sbjct: 523 TLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR----IALMAED 576
Query: 373 KEIFDDMGKAGIKPDAHAYSILAK 396
+ IF++ A+ + +
Sbjct: 577 EAIFEE-----------AHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 637 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.71 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.19 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.9 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.68 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.59 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.55 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.38 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.3 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.53 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.16 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.91 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.44 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.38 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.86 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.85 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.55 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.67 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.11 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.99 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.38 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=359.39 Aligned_cols=441 Identities=8% Similarity=-0.008 Sum_probs=369.6
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
+.+++..|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+|+++... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 346788999999999999999999999999985 4678899999999999999999999999988653 789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 006632 148 VINAFSESGNMEEAMDTFWKMKES---------------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 212 (637)
++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh
Confidence 999999999999999999953221 223358899999999999999999999999999875 334
Q ss_pred HHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 213 LRTYNVL--------------------------------------VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 213 ~~~~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
...+..+ +..|.+.|++++|.++|+++.+. +++..+|+.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 5554444 44556778888999999888765 5788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006632 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
+.+|.+.|++++|..+|+++.+.+. .+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 9999999999999999999887654 467888889999999999999999999887654 56788888888999999999
Q ss_pred hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTM 414 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (637)
++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999887754 3467888899999999999999999999888764 457888888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006632 415 IESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 415 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8764 567888999999999999999999999988765 55677 6788999999999999999999998887643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 489 VHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 489 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..+|..++.+|.+.|++++|.++++++...
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 226778888999999999999998888777544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=351.14 Aligned_cols=459 Identities=10% Similarity=-0.010 Sum_probs=372.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006632 82 LIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEA 161 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 161 (637)
+.+.|.+..+...+..+. .+++..|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 455667777777776653 468899999999999999999999999999864 57889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHHhcC
Q 006632 162 MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG--------------NVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g 227 (637)
..+|+++... +++..+++.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998653 5689999999999999999999999999533221 12345899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH--------------------------------------HHHHHHcCCHHHHHH
Q 006632 228 NITEAWNVMHKMAASGMKPDVVTYNTI--------------------------------------ATAYAQNGEADQAEE 269 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~A~~ 269 (637)
++++|+++|++|.+.+. .+...+..+ +..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999999988642 233443333 455667889999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC
Q 006632 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
+|+++.+. +++..+++.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998765 4789999999999999999999999999998765 4577889999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTI 429 (637)
Q Consensus 350 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (637)
+.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4578899999999999999999999999998753 4568899999999999999999999999999875 6688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q 006632 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAF----GVHPQ--KSTFLLLAEAR 503 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~ 503 (637)
+.+|.+.|++++|+++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999998643 37889999999999999999999999999754 67888 78999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcccc
Q 006632 504 RATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLR 581 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~ 581 (637)
.+.|++++|.++++++....| ++.. ++..|+++|...|+|++|....+++.+.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p-----------------------~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLST-----------------------NDAN--VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSS-----------------------CCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-----------------------CChH--HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999998865533 2221 2355666666666666666655555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-27 Score=244.00 Aligned_cols=382 Identities=11% Similarity=0.036 Sum_probs=221.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
+...+.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455666777777777777766542 2345555556666666777777777776666654 5566667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|+..|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|...|+
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777776665322 44566666666667777777777776666543 3344555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
++.+.. +.+..+|..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|+..|++.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------- 229 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRA-------- 229 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHH--------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH--------
Confidence 665542 22345555555555555555555555555554322 23344444444455555555555444444
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
.... +.+..++..+..+|...|++++|...|+++.+.. +.+..++..++..
T Consensus 230 ---------------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 230 ---------------------------LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp ---------------------------HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred ---------------------------HhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4332 1234555555555555555666665555555543 2245556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|+..|+++.+.. +.+..++..++.++.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666665543 4555666666666666666666666666665532 12345566666666666666666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006632 478 EEILQIMKAFGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 507 (637)
...|+++.+ +.|+ ...|..+..++...|
T Consensus 359 ~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 666666654 3343 335555555555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=243.72 Aligned_cols=365 Identities=13% Similarity=0.016 Sum_probs=294.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...... |.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777777665432 45566666777777777777777777776653 5567778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+..+ .+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888777653 23455677788888888888888888888776542 2455667777788888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006632 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+..+|..+...+...|++++|...|+.+.+..+ .+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 87653 44677888888888888888888888888877653 467788899999999999999999999988764 4468
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.++..++..|.+.|++++|...|+++.+.+ +.+..+|..++.++...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999875 5678899999999999999999999999999864 34788999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|...++++.+ ..|+ ...+..++.++.+.|++++|...++++....|.
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999976 4454 668999999999999999999999999887663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=253.43 Aligned_cols=202 Identities=16% Similarity=0.286 Sum_probs=130.0
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHH
Q 006632 128 SIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK---------PEESV 197 (637)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~ 197 (637)
.+.+++.+.+..+.+ .+++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 344444444443333 34566666666666666666666666666666666666666666665543 45666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
++|++|...| +.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 91 ~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 91 DIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776665 666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006632 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 330 (637)
|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777776666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=252.60 Aligned_cols=213 Identities=21% Similarity=0.270 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHH
Q 006632 266 QAEEVIVEMEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM 344 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (637)
.+..+.+++.+.+....+ .+++.+|++|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344455556555554332 346677777777777777777777777777777777777777777665442110
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006632 345 KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424 (637)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 424 (637)
...+.++.|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0112234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARR 504 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 504 (637)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.|++++|.++|++|.+.|..|+..||..+++.+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555554444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-24 Score=224.78 Aligned_cols=442 Identities=11% Similarity=0.012 Sum_probs=291.2
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
.+..|..+...+.+.|++++|+..|+++... .|++.+|..+..++...|++++|...++++++.+ +.+...+..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 3556777889999999999999999999985 4789999999999999999999999999999876 677889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+|.+.|++++|...|+++...+.. +......++..+........+.+.+..+...+.. |+...+..-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCc
Confidence 999999999999999999987643 4444445555444433333333333222211100 11110000000000000000
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----C--CC------CCChhh
Q 006632 231 EAWNVMHKMAASGM---------KPDVVTYNTIATAYAQ---NGEADQAEEVIVEMEH-----N--GV------QPNGRT 285 (637)
Q Consensus 231 ~A~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~ 285 (637)
....+...+..... +.+...+..+...+.. .|++++|...|+++.+ . .. +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 01111111111100 1123444444444443 6777777777777766 2 11 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006632 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
+..+...+...|++++|+..|+++.+.. |+...+..+...+...|++++|...++.+.+..+ .+..++..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHH
Confidence 6677777777888888888887777654 2366777777777778888888888877776542 355677777777788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.|++++|...++.+.+.. +.+..++..++..|...|++++|..+++++.+.. +.+..+|..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888777654 3356677777777888888888888888777653 44567777777888888888888888
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 446 FDKMCEHGVS-PN----LKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 446 ~~~m~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|+++.+.... ++ ...+..+..++.. .|++++|...++++.+. .| +...+..++.++.+.|++++|...+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8877653211 11 3367777777777 78888888888777652 33 3556777777888888888888888
Q ss_pred HHHhhhhc
Q 006632 517 SKIKNKER 524 (637)
Q Consensus 517 ~~~~~~~~ 524 (637)
+++....|
T Consensus 473 ~~a~~~~~ 480 (514)
T 2gw1_A 473 EESADLAR 480 (514)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhcc
Confidence 88776655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-23 Score=220.84 Aligned_cols=435 Identities=9% Similarity=-0.008 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+......+...|++++|...|+++++.. |+...+..+..+|.+.|++++|...|+++.+.++. +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3456677788888999999999999988864 68888999999999999999999999998887543 67788889999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
|...|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999888765 345445555555554444444444444333222212222111111111111111111
Q ss_pred HHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHH
Q 006632 267 AEEVIVEMEHNGV---------QPNGRTCGIIISGYCK---EGKIKEALRFARTMKE-----YGV--------HPNLVIF 321 (637)
Q Consensus 267 A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~ 321 (637)
...+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1224555555555554 8999999999999987 311 2245678
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006632 322 NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
..+...+...|++++|...++.+.+..+. ...+..+...+...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999887643 8889999999999999999999999998864 45788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006632 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
|++++|...++++.+.. +.+..++..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999875 56788999999999999999999999999988642 35678999999999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHHH
Q 006632 482 QIMKAFGV-HPQ----KSTFLLLAEARRA---TGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERL 542 (637)
Q Consensus 482 ~~m~~~g~-~p~----~~~~~~l~~~~~~---~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~ 542 (637)
+++.+... .++ ...+..++.++.. .|++++|...++++....+.. ...++.+.|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99865211 122 3488899999999 999999999999998765542 2357788999999999
Q ss_pred HhhhccCCC
Q 006632 543 YHKEATTAS 551 (637)
Q Consensus 543 ~~~~~~~~~ 551 (637)
+++.|++..
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 999887754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-23 Score=212.20 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 90 EAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 169 (637)
.+...|.++... .+.++..+..+...+...|++++|..+|+++++.. +.+..++..+...|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444432 13355666777777777777777777777776654 4566677777777777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHH
Q 006632 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL---RTYNVLVRA------------WCNEKNITEAWN 234 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~ 234 (637)
+.++. +..++..+..+|...|++++|...|+++.... +.+. ..+..++.. +...|++++|+.
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 65433 56667777777777777777777777776643 2333 555555433 444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006632 235 VMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 314 (637)
.|+++.+.. +.+..++..++.+|...|++++|...|+++.+... .+..++..++.+|...|++++|+..|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 444444332 22344444444444444444444444444443221 233444444444444444444444444444321
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HH
Q 006632 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AH 389 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~ 389 (637)
+.+...+..+... . .......+...|...|++++|...|+.+.+.. |+ ..
T Consensus 242 p~~~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 242 QDHKRCFAHYKQV-K----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHHH-H----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred CChHHHHHHHHHH-H----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 1111111111000 0 00011223667777888888888888877642 33 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
.+..++..+.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...|+++.+.... +...+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 67777788888888888888888877653 556788888888888888888888888888774321 344555555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=210.25 Aligned_cols=331 Identities=13% Similarity=0.083 Sum_probs=243.4
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.++..|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++++.+ +.+..++.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 456788899999999999999999999999998753 4578999999999999999999999999999886 66789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHhcCChHHHHHHHHHHHhcCCCCC
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTT---STYNTLIKG------------YGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
.+...|.+.|++++|...|+++.+..+. +. ..+..++.. +...|++++|+..|+++.... +.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 9999999999999999999999987532 44 677777554 889999999999999999874 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006632 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS 291 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 291 (637)
+..++..++.+|.+.|++++|+..|+++.+.. +.+..+|..++.+|...|++++|...|+++..... .+...+..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHH
Confidence 88999999999999999999999999998763 45789999999999999999999999999987532 23333333300
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcC
Q 006632 292 GYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD----VITYSTIMNAWSTAG 367 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 367 (637)
. . ....+..+...+...|++++|...++.+.+..+. + ...+..+..++.+.|
T Consensus 254 ~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 254 V--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp H--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTT
T ss_pred H--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCC
Confidence 0 0 0011222344444455555555555554443211 1 234555556666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
++++|+..++.+.+.. +.+..+|..++.+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 310 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 6666666666655542 3355666666666666666666666666666542 33444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-22 Score=213.61 Aligned_cols=434 Identities=12% Similarity=0.032 Sum_probs=329.8
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
....|..+...+.+.|++++|+..|+++++.. +.++.+|..+..++...|++++|...++++++.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 46678888999999999999999999999853 4588999999999999999999999999999876 678889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHh
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG-----NVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~ 225 (637)
.+...|++++|...|+.+ ... |+ .....+..+...+...+|...++.+.... ...|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999999999999999743 322 22 22333455666667788999999886531 112333 33444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHhCCCCCC-------hhhHHHH
Q 006632 226 EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYA--------QNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
..+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 66666665554433321 22211 2223332222 235789999999998876432 2 2346677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 006632 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFM 369 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 369 (637)
...+...|++++|+..|+++.+. .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 78888999999999999999886 4557888889999999999999999999988865 34788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
++|...++++.+.. +.+..++..+...|...|++++|..+++++.+.. +.+..++..+...+...|++++|+..|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998864 3467889999999999999999999999998874 667789999999999999999999999998
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006632 450 CEHGV-----SPNLKTFETLMWGYSEA----------RQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 450 ~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
.+... ......+..+..++... |++++|...|+++.+. .| +...+..++.++.+.|++++|.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 76421 11223345556777777 9999999999998763 34 4668889999999999999999
Q ss_pred HHHHHHhhhhcc
Q 006632 514 RILSKIKNKERT 525 (637)
Q Consensus 514 ~~~~~~~~~~~~ 525 (637)
..++++....|.
T Consensus 483 ~~~~~al~~~~~ 494 (537)
T 3fp2_A 483 ELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhCCC
Confidence 999999877653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=211.99 Aligned_cols=433 Identities=9% Similarity=0.015 Sum_probs=291.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
....+..+...+...|++++|...|+++++.. +.+...+..+..+|.+.|++++|++.|+++.+.++. +..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 34667778888889999999999999988876 667888899999999999999999999998887643 6788888899
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHH
Q 006632 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG------MKPDVVTYNTIATAYA 259 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~ 259 (637)
+|...|++++|+..|+.+... |+ .....+..+...+...+|...++.+.... ..|+. ..+..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN----GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcC----CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 999999999999998644321 22 22223445555666678888888886431 22333 3444455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-------HHHHH
Q 006632 260 QNGEADQAEEVIVEMEHNGVQPNG-RTCGIIISGYCKE--------GKIKEALRFARTMKEYGVHPNL-------VIFNL 323 (637)
Q Consensus 260 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ 323 (637)
...+.+.+...+...... .+.. .....+...+... |++++|+.+++++.+.. +.+. .++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHH
Confidence 666766665554333221 1111 1233333333222 36788888888887653 2232 24555
Q ss_pred HHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006632 324 LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE 403 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (637)
+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 6667777888888888888887754 447777778888888888888888888887754 3467788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006632 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+... .+...+..+...+...|++++|...|++
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887764 45567788888888888888888888888877542 2456777888888888888888888888
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhcc
Q 006632 484 MKAFG-----VHPQKSTFLLLAEARRAT----------GLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEAT 548 (637)
Q Consensus 484 m~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~ 548 (637)
+.+.. .......+.....++.+. |++++|...++++... .|+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------~p~ 460 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----------------------DPR 460 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-----------------------CTT
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-----------------------CCC
Confidence 75421 111122244455666666 7777777777766544 343
Q ss_pred CCCCCCcccccccccccCCCchhhhhhhhcccccc
Q 006632 549 TASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDA 583 (637)
Q Consensus 549 ~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~ 583 (637)
+.. ++..|+.+|...|++++|....++..+...
T Consensus 461 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 461 SEQ--AKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 332 345677777777777777766665544443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-19 Score=176.26 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3444555555555555555555555555543 344555555555555555555555555555544322 44455555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006632 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|...|+++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHh
Confidence 5555555555555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-19 Score=175.77 Aligned_cols=344 Identities=14% Similarity=0.127 Sum_probs=210.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
++..+..+...+...|++++|+..|+++.+.. +.++.++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888888899999999999999888753 3467888888888999999999999999988875 557788888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
.|...|++++|...|+++.+..+. .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 999999999999999998876420 13334433321110 1112333445555556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
+++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555442 23445555555566666666666666665554432 3455555666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006632 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
..+.. +.+...+..+.. +. .......+...+...|++++|...++.+.+... .+.
T Consensus 214 a~~~~-~~~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 268 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVA 268 (359)
T ss_dssp HHHHC-TTCHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSH
T ss_pred HHhhC-ccchHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cch
Confidence 55432 122222211100 00 011122234455666666666666666665431 122
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 389 ----HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 389 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
..+..+...|.+.|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+..+. +...+..+
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l 346 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 224445666777777777777777776653 446667777777777777777777777777764321 34455555
Q ss_pred HHHHH
Q 006632 465 MWGYS 469 (637)
Q Consensus 465 ~~~~~ 469 (637)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-17 Score=171.30 Aligned_cols=365 Identities=14% Similarity=0.045 Sum_probs=291.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006632 91 AQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE----SGNMEEAM 162 (637)
Q Consensus 91 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~ 162 (637)
++..+....+ ..++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455555554 3367777777777777 788899999999888754 66778888888888 88899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 006632 163 DTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWN 234 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 234 (637)
..|++..+.| +...+..|...|.. .+++++|+..|++..+.+ +...+..|...|.. .+++++|+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999888865 66778888888887 788999999999887754 67788888888887 788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHH
Q 006632 235 VMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFA 306 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 306 (637)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999888765 67788888888887 788999999998888764 56677778888876 78899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHH
Q 006632 307 RTMKEYGVHPNLVIFNLLIKGFVE----IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA-----GFMDKCKEIFD 377 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~ 377 (637)
++..+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|...++
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 8887753 45666667777777 788888988888887654 556777777888777 88999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 006632 378 DMGKAGIKPDAHAYSILAKGYVREQ---EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMC 450 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 450 (637)
+..+.+ +...+..|...|...| ++++|.++|++..+.+ +...+..+...|.. .++.++|+..|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888864 5677788888888766 7888999999988763 67888888888888 789999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 006632 451 EHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 489 (637)
+.+ +...+..|...|.. .++.++|...|++..+.+.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 864 56778888888887 7899999999998877553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-17 Score=169.85 Aligned_cols=364 Identities=15% Similarity=0.089 Sum_probs=313.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 006632 126 IHSIMSQVEENGMDPDSIFFNAVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESV 197 (637)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 197 (637)
+...+....+ ..+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455555555 3477888888888888 899999999999999874 67889999999998 89999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006632 198 KLLDLMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEE 269 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 269 (637)
+.|++..+.+ +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|..
T Consensus 100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998864 77888889999988 899999999999999876 67788889999988 889999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHH
Q 006632 270 VIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE----IMDRDGVDEVL 341 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 341 (637)
.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67888899999998 899999999999998864 56778888888886 78999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 006632 342 ALMKEFRVNPDVITYSTIMNAWST----AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE-----QEPEKAEELLM 412 (637)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 412 (637)
+...+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..|..+|... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9988764 56677778888888 899999999999998764 667888899999888 99999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 006632 413 TMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMK 485 (637)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 485 (637)
+..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..|...|.. .+++++|...|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999864 6678888888888867 8899999999999864 77888899999988 899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhh
Q 006632 486 AFGVHPQKSTFLLLAEARRA----TGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 486 ~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~ 523 (637)
+.| +...+..+..+|.. .++.++|..+++++....
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 865 56788889999988 899999999999987765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-17 Score=171.02 Aligned_cols=422 Identities=8% Similarity=0.001 Sum_probs=276.0
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.++..|..++. +.+.|++++|+.+|+++++. .+.+...|...+..+.+.|+++.|..+|+++++. .|+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 445666777776 36667777777777777764 2345666777777777777777777777777664 3466666665
Q ss_pred HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCC
Q 006632 149 INAF-SESGNMEEAMD----TFWKMKE-SGLTP-TTSTYNTLIKGYGI---------AGKPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 149 l~~~-~~~g~~~~A~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~ 212 (637)
+... ...|+.+.|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.... |.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 5422 33455555443 5555443 23322 34566666665544 56666677777666652 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhCC---CCC
Q 006632 213 --LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM------EHNG---VQP 281 (637)
Q Consensus 213 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~~ 281 (637)
...|..........+. .+...++. ...+++..|..++.++ .+.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 1222222211100110 00001110 1234556666666552 2211 233
Q ss_pred C--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHh---
Q 006632 282 N--------GRTCGIIISGYCKE----GKI----KEALRFARTMKEYGVHPNLVIFNLLIKGFVE-------IMDRD--- 335 (637)
Q Consensus 282 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~--- 335 (637)
+ ...|...+...... ++. +++..+|++..... +.+...|...+..+.+ .|+.+
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444333222 222 47778888887653 5578888888888775 68876
Q ss_pred ----hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHH
Q 006632 336 ----GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-A-HAYSILAKGYVREQEPEKAEE 409 (637)
Q Consensus 336 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~ 409 (637)
+|..+++...+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . .+|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999886323456888999999999999999999999999986 343 3 589999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006632 410 LLMTMIESGFHPNVVIFTTIISG-WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
+|++..+.. +.+...|...+.. +...|+.++|..+|++.++... -+...|..++..+...|+.++|..+|++....+
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999863 3333444333322 3468999999999999987532 257889999999999999999999999998753
Q ss_pred -CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 489 -VHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 489 -~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
..|+ ...|...+......|+.+.+..+..++....|
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2333 44788888888999999999999999877655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-18 Score=170.24 Aligned_cols=283 Identities=12% Similarity=-0.039 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..+..+...+...|++++|..+|+++.+..+. +...+..++..+...|++++|..+++++.... +.+...|..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHH
Confidence 33444444444555555555555555443322 33334444444455555555555555554432 2334444444445
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 006632 223 WCNEK-NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE 301 (637)
Q Consensus 223 ~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 301 (637)
+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+... .+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHH
Confidence 55555 4555555555444432 12233444444444444444444444444443321 122333334444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006632 302 ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
|...++++.+.. +. +...+..+...+...|++++|...++++.+
T Consensus 178 A~~~~~~al~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 178 AERFFSQALSIA-PE-----------------------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHTTC-TT-----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CC-----------------------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444444332 22 334444444444444444444444444433
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 382 AG--------IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 382 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
.. .+....++..+...|.+.|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 10 12234556666666666666666666666665543 3455566666666666666666666666665532
Q ss_pred CCCCHHHHHHHHHHH
Q 006632 454 VSPNLKTFETLMWGY 468 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~ 468 (637)
. .+...+..+..++
T Consensus 301 p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 R-DDTFSVTMLGHCI 314 (330)
T ss_dssp S-CCHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHH
Confidence 1 1444555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=169.46 Aligned_cols=292 Identities=9% Similarity=-0.021 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006632 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...++++.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 344445555555555566666666666655442 22334444555556666666666666666655432 3455566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 006632 291 SGYCKEG-KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFM 369 (637)
Q Consensus 291 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 369 (637)
..+...| ++++|...|+++.... +.+...|..+...+...|++++|...++.+.+..+ .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 6666666 6666776666666543 33455666677777777777777777777666542 2456667788899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 006632 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG--------FHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
++|...++.+.+.. +.+..++..++..|...|++++|...++++.+.. .+.+..+|..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998864 4578899999999999999999999999988641 13456799999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HHcCCHH
Q 006632 442 AIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEAR-RATGLTK 510 (637)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~-~~~g~~~ 510 (637)
|+..|+++.+... .+...+..+..++...|++++|...|+++.+ +.|+ ...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999998643 3677899999999999999999999999876 5564 55777788777 4556544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-16 Score=168.19 Aligned_cols=390 Identities=10% Similarity=0.043 Sum_probs=261.7
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CCC-C
Q 006632 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL-TIQKRFNSIHS----IMSQVEEN-GMD-P 140 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~ 140 (637)
.+.+...|..++..+.+.|++++|..+|++++.. .|+...|...+... ...|+.+.|.+ +|++.+.. |.. +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 4567888999999999999999999999999975 46888888877543 45677777665 77776653 443 3
Q ss_pred CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 006632 141 DSIFFNAVINAFSE---------SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 141 ~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
+...|...+....+ .|+++.|..+|++..+....+....|..........|. ..+..++.
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------- 188 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------- 188 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH----------
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH----------
Confidence 56788888877665 78999999999999883111112344433332111111 01111110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HH
Q 006632 212 NLRTYNVLVRAWCNEKNITEAWNVMHKM------AASG---MKPD--------VVTYNTIATAYAQN----GEA----DQ 266 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~ 266 (637)
...+++..|..++..+ .+.. ++|+ ...|...+...... ++. +.
T Consensus 189 ------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 189 ------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred ------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 0123344455444442 1111 2332 23444444332221 122 36
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006632 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCK-------EGKIK-------EALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 332 (637)
+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 667777776653 2456777777777765 67766 88888888875322456778888888888888
Q ss_pred CHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHH
Q 006632 333 DRDGVDEVLALMKEFRVNPD-VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG-YVREQEPEKAEEL 410 (637)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 410 (637)
++++|..+|+.+.+..+ .+ ...|...+..+.+.|+++.|+.+|++..+.. +.+...+...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 88888888888887542 23 3578888888888888999999999888753 2233444333333 3368999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN--LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|++..+.. +.+...|..++..+...|+.++|..+|+++...+. .|+ ...|...+......|+.+.+..+++++.+
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888763 55788899999999999999999999999988642 232 44777778888888999999988888765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-18 Score=175.67 Aligned_cols=288 Identities=15% Similarity=0.014 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChh
Q 006632 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKG---FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST----AGFMD 370 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 370 (637)
++++|+..|++..+.. +.++..+..+..+ +...++.++|.+.++...+..+ .+..++..+...+.. .++++
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 3555555555554432 2233333333222 2233444455555555444331 233334333333322 23445
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------
Q 006632 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS--------------- 435 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--------------- 435 (637)
+|...+++..... +.+..++..+...|...|++++|...++++.+.. |.+..++..+..+|..
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555554432 3345555555555555666666666555555542 3344444444444322
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHH-HHHcCC
Q 006632 436 ----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS--TFLLLAEA-RRATGL 508 (637)
Q Consensus 436 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~-~~~~g~ 508 (637)
.+..++|...|++..+... .+..++..+...+...|++++|+..|++..+....|... .+..+... +...|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 2335678888888776532 244567788888888999999999998887743332221 23333332 346788
Q ss_pred HHHHHHHHHHHhhhhccc-cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCccc
Q 006632 509 TKEAKRILSKIKNKERTN-EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSL 587 (637)
Q Consensus 509 ~~eA~~~~~~~~~~~~~~-~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~ 587 (637)
.++|+..++++....+.. ...+....+...+++.++.+|+++. ++..||.+|...|++++|....++..+.+..-..
T Consensus 388 ~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~--~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 388 EDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE--ALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT--HHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 899999988887665532 1222334445566777778888765 5788999999999999999999988888877777
Q ss_pred chhhh
Q 006632 588 ECSWF 592 (637)
Q Consensus 588 g~swi 592 (637)
..||+
T Consensus 466 a~~~~ 470 (472)
T 4g1t_A 466 ASSWN 470 (472)
T ss_dssp -----
T ss_pred HhhcC
Confidence 77776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=174.28 Aligned_cols=310 Identities=10% Similarity=0.023 Sum_probs=197.0
Q ss_pred HHHhcCChHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006632 186 GYGIAGKPEESVK-LLDLMSREGNVKP--NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 186 ~~~~~g~~~~A~~-~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
.+...|++++|+. .|++........| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445566666666 5554443221111 23445566666666666666666666666553 335556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006632 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
++++|...|+++.+... .+..++..+...|...|++++|+..++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 66666666666655432 345566666666666666666666666666543 1111111111000 0
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006632 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
. ...+ ...+..+...+ ..|++++|...++++.+..... +..++..++..|.+.|++++|...|+++.+.. +.
T Consensus 177 ---~-~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 177 ---G-GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ---h-hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01111233333 8889999999999988764221 57889999999999999999999999988764 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C-------
Q 006632 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH---P------- 491 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p------- 491 (637)
+..+|..++..+...|++++|+..|+++.+... .+...+..+..+|...|++++|...|+++.+.... |
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 788999999999999999999999999987542 35778999999999999999999999988642111 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 492 QKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
....|..++.++...|+.++|..+.++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15789999999999999999999876543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-18 Score=169.48 Aligned_cols=304 Identities=11% Similarity=-0.013 Sum_probs=177.2
Q ss_pred hcCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 154 ESGNMEEAMD-TFWKMKESGLT---PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 154 ~~g~~~~A~~-~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
..|++++|.. .|++....... .+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3456666666 66654433211 123456667777777777777777777777653 45667777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
++|+..|+++.+.. +.+..++..+..++...|++++|...++++...... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 77777777776653 335667777777777777777777777777765432 22222111000 00 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006632 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
. .+. ..+..+...+ ..|++++|...++.+.+..+.. +..++..+...|...|++++|+..++++.+.. +.+.
T Consensus 179 ~----~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----GLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----ccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 000 0111111112 4455555555555555443211 45666666666667777777777777666543 3356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP----------NL 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~ 458 (637)
.++..++..|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 677777777777777777777777776653 4566677777777777777777777777776532111 15
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 006632 459 KTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+|..+..++...|+.++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6777777777788888777777653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-18 Score=171.56 Aligned_cols=277 Identities=8% Similarity=-0.016 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006632 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISG 292 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 292 (637)
...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|...|+++.+... .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3456667777777777777777777776653 33566677777777777777777777777766532 346667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhH
Q 006632 293 YCKEGKIKEALRFARTMKEYGVHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 371 (637)
|...|++++|+..|+++.+.. |+.. .+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 777777777777777776532 2111 111000 112334455667777788888
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 372 CKEIFDDMGKAGIK-PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 372 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
|+..++++.+.... .+..++..++..|.+.|++++|...|+++.+.. +.+..+|..++.+|...|++++|+..|+++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887765321 157778888888888888888888888887764 5667888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 451 EHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV---HP--------QKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p--------~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+... .+..++..+..+|...|++++|...|+++.+... .| +...|..+..++...|+.+.|.+...+-
T Consensus 275 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 275 EIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 7532 2466788888888888888888888888754110 00 2457888888888889988888887765
Q ss_pred h
Q 006632 520 K 520 (637)
Q Consensus 520 ~ 520 (637)
+
T Consensus 354 l 354 (365)
T 4eqf_A 354 L 354 (365)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=167.09 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006632 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (637)
..+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|...|+.+.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 334444455555555555555555554432 3344455555555555555555555555554433 22455555555556
Q ss_pred HHcCChhHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006632 364 STAGFMDKCKEIFDDMGKAGIK---------PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISG 432 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~ 432 (637)
...|++++|...++++.+.... .....+..+...|.+.|++++|..+|+++.+.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6666666666666655543100 113345566888999999999999999999874 33 68999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 006632 433 WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~e 511 (637)
|...|++++|+..|+++.+... .+..+|..++.+|...|++++|+..|+++.+ +.|+ ...+..++.++.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998643 3678999999999999999999999999987 3455 6789999999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 006632 512 AKRILSKIKNKERT 525 (637)
Q Consensus 512 A~~~~~~~~~~~~~ 525 (637)
|...++++....|.
T Consensus 300 A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 300 AVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999877553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-15 Score=160.33 Aligned_cols=382 Identities=12% Similarity=0.108 Sum_probs=288.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 76 TKLMNSLIERGKPQEAQAIFNNLIEGGH--KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
...++.|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +.........+... .....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHH
Confidence 4467888899999999999999884311 12344555566666555 45555555554432 22444777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999998631 2233344433 778899999998865 35788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
..|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 999664 377888899999999999999999998877654 34444556999999999988644332 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 314 VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI 393 (637)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (637)
.++...|..+...|...|++++|...|... ..|..+..+|.+.|+++.|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 456777888999999999999999999885 37899999999999999999999876 36789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE--A 471 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~ 471 (637)
+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|.-|..++++ -
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 999999999999998877754 3467778899999999999999999998887643 2233466666666655 4
Q ss_pred CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 472 RQPWRAEEILQIMKAFGVHP------QKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
++..++.++|..-. .+.| +...|..++-+|.+.|+++.|...+-+
T Consensus 1330 eklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1330 QKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 56666777665432 2333 355799999999999999999854433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-16 Score=162.00 Aligned_cols=384 Identities=12% Similarity=-0.034 Sum_probs=238.2
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEG--------GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-----G 137 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 137 (637)
.+..||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888899999999988876541 12234678888888899999999998888887652 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhcCCCC
Q 006632 138 --MDPDSIFFNAVINAFSES--GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY---GIAGKPEESVKLLDLMSREGNVK 210 (637)
Q Consensus 138 --~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~ 210 (637)
......++..+..++.+. +++++|+..|++..+..+. ++..+..+..++ ...++.++|++.+++..+.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--C
Confidence 112345666666566554 4688899999888876543 555565555443 34577788888888877764 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH
Q 006632 211 PNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC 286 (637)
Q Consensus 211 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 286 (637)
.+..++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+++..+..+ .+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 566677666655544 456778888888887654 44667788888888888999999888888877543 345666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006632 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (637)
..+..+|...+....+... ... .......+..+.|...++...+..+ .+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------~~~------~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------NGM------YGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------HHH------HHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 6666665432211110000 000 0001111224667777777766542 3455677788888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 367 GFMDKCKEIFDDMGKAGIKPDA--HAYSILAKG-YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
|++++|+..|++.++....+.. ..+..+... +...|++++|+..|.+..+. .|+...+.. ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 8888888888888876432221 123333322 34678888899888888875 444333222 223445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006632 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.++++..+..+ .+..+|..+..++...|+.++|++.|++..+.+
T Consensus 417 ~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56666665432 356788888888888899999999998887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-18 Score=166.36 Aligned_cols=262 Identities=15% Similarity=0.177 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006632 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHH
Confidence 4444444444444444444444321 23334444444444445555554433333321 12344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006632 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 55555544444442 234445555555555555555555555433 24555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006632 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++|+.+++......
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 555544 1445555555555555555555332221 11222223345555555555555555555554433
Q ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 006632 384 IKPDAHAYSILAKGYVRE--QEPEKAEELLMTMIESGFHP------NVVIFTTIISGWCSDGSMDRAIE 444 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 444 (637)
+.....|+-|...|++- +++.+.++.|..-+ +++| +...|..+...|.+.++++.|..
T Consensus 238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 238 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33445555555555433 23333333332111 1111 23345555555556666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-14 Score=160.13 Aligned_cols=219 Identities=11% Similarity=0.137 Sum_probs=101.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006632 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
..+++++|.++.++.. +..+|..+..++...|++++|...|.+. .|...|..++.+|.+.|++++|++
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555544331 3444555555555555555555555332 234444445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006632 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
++...++.. ++....+.++.+|++.+++++..... . .++...+..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 555444332 22222223444455554444322221 1 123333444555555555555555555542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 24555555555555555555555544 23455555555555555555554443321 1233444455
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 006632 465 MWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m 484 (637)
+..|...|.+++|+.+++..
T Consensus 1287 i~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=156.92 Aligned_cols=266 Identities=10% Similarity=-0.003 Sum_probs=189.6
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355567778899999999999999999998753 4478888999999999999999999999998875 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCCHH
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL--------------IK-GYGIAGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
..|...|++++|...|+++.+..+. +...+..+ .. .+...|++++|...++++.... +.+..
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 173 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQ 173 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHH
Confidence 9999999999999999999886533 23333333 22 2556677777777777777653 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006632 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC 294 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 294 (637)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+... .+..++..+...|.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 77777777777777777777777776653 33466677777777777777777777777665432 34566666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006632 295 KEGKIKEALRFARTMKEYGVHP-----------NLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
+.|++++|...++++....... +...|..+..++...|+.++|..+++
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777777777777665442111 34455555666666666666655554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=156.90 Aligned_cols=279 Identities=9% Similarity=0.035 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006632 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGY 293 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 293 (637)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 345666677777777777777777776653 33566667777777777777777777777766532 3556666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHH-HH-HHHHcCChhH
Q 006632 294 CKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI-MN-AWSTAGFMDK 371 (637)
Q Consensus 294 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~ 371 (637)
...|++++|+..++++.+.. +.+...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777776543 1111111111100 0111111122 22 3667788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|...++++.+.. +.+..++..++..|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|+..|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988764 4478889999999999999999999999998864 56788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 452 HGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-------------KSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 452 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
... .+..++..+..++...|++++|...++++.+ ..|+ ...+..+..++.+.|+.++|..++++
T Consensus 235 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 INP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 542 3677899999999999999999999999875 2343 56888999999999999999999876
Q ss_pred Hhhh
Q 006632 519 IKNK 522 (637)
Q Consensus 519 ~~~~ 522 (637)
....
T Consensus 312 ~l~~ 315 (327)
T 3cv0_A 312 NVEP 315 (327)
T ss_dssp CSHH
T ss_pred HHHh
Confidence 6544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-16 Score=150.85 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=159.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 006632 223 WCNEKNITEAWNVMHKMAASGMKPDV--VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 300 (637)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34556666666666554322 2222 2334456666666666666654433 1 2345556666666666666677
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006632 301 EALRFARTMKEYGV-HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 301 ~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 379 (637)
+|++.++++...+. +.+...+..+...+...|++++|.+.++. +.+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777776665543 33455555566666677777777766655 345666777777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006632 380 GKAGIKPDAHAY---SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 380 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|+++.+... -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 6653 332211 122333444577888888888877763 66777788888888888888888888888777542 2
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHH
Q 006632 457 NLKTFETLMWGYSEARQPWR-AEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 494 (637)
+..++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 56677777777777887765 4577777766 556544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-17 Score=159.56 Aligned_cols=377 Identities=13% Similarity=0.074 Sum_probs=154.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 84 ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 163 (637)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|.+.|.+ .+|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566777877777772 224777888888888888888877754 3466677777777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG 243 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 243 (637)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 66665553 3456677778888888888877776663 256667888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL 323 (637)
Q Consensus 244 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 323 (637)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 35777888888888888888888776 25677888888888888888875544432 223333445
Q ss_pred HHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 006632 324 LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA--GFMDKCKEIFDDMGKAGIKP------DAHAYSILA 395 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 395 (637)
++..|.+.|.++++..+++...... +.....|+-+.-+|++- +++.+.++.|.. +.+++| +...|..++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 7777788888888888887776654 44566677666666554 233333333321 112222 355677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-CC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 396 KGYVREQEPEKAEELLMTMIES-GF-------------HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~-~~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
..|...++++.|.... .+. .. ..+...|-..+.-|. +....++.-+....... .|.
T Consensus 290 ~ly~~~~e~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld~--- 359 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LDH--- 359 (449)
T ss_dssp HHHHHTTCHHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CCH---
T ss_pred HHHHhhchHHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cCc---
Confidence 8888888888776532 222 00 223444444444444 12222222222222211 122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006632 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
..++..+.+.|...-+..+++..+..+ ....=.++-++|....+++.=+.-++.
T Consensus 360 ~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 233444566666666666666665432 223334556666777666655544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=146.70 Aligned_cols=253 Identities=11% Similarity=0.066 Sum_probs=182.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPS--LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
++.....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45666788999998888776542 333 23556667888888888888876644 1 2566777788888888888
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 157 NMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888887765433 556677777888888888888888876 35777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 236 MHKMAASGMKPDVVTY---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++...
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88887763 443211 122333444577888888888887763 356777788888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhh-HHHHHHHHhhCC
Q 006632 313 GVHPNLVIFNLLIKGFVEIMDRDG-VDEVLALMKEFR 348 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 348 (637)
. +.+..++..++..+...|+.++ +.++++++.+..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4 4566777777777777777755 456777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=174.31 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIE---SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
.+|++||++|++.|++++|.++|.+|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3445555555555555555555444332 2344455555555555555555555555555555445555555555555
Q ss_pred HHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006632 466 WGYSEARQP-WRAEEILQIMKAFGVHPQKSTFLLLAEARRA 505 (637)
Q Consensus 466 ~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 505 (637)
.++++.|+. ++|.++|++|.+.|+.||..+|++++....+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 544444442 3444455555444555555555444443333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=170.16 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006632 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKE---SGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 141 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
-..+|++||++|++.|++++|..+|++|.+ .|+.||.++||+||++|++.|++++|.++|++|.+.| +.||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 356899999999999999999999988764 4789999999999999999999999999999999888 899999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHH
Q 006632 218 VLVRAWCNEKN-ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN------GRTCGIII 290 (637)
Q Consensus 218 ~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li 290 (637)
+||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+ .++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999997 5789999999999999999999999987665543 33333333 2333333 44555667
Q ss_pred HHHHhcC
Q 006632 291 SGYCKEG 297 (637)
Q Consensus 291 ~~~~~~g 297 (637)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-14 Score=134.14 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 006632 251 YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV--HPN----LVIFNLL 324 (637)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 324 (637)
+..+...+...|++++|...|+++.+.. .+..++..+..+|...|++++|+..++++.+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 3344444444444444444444444444433210 001 2344444
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006632 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
...+...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+..++..+...|...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 444444444444444444444422 221 22344455666666666655542 22345555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 405 EKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++.+... .+...+..+..++...|++++|...+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666543 44556666666666666666666666666665431 23555666666666666666666666665
Q ss_pred HH
Q 006632 485 KA 486 (637)
Q Consensus 485 ~~ 486 (637)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-14 Score=133.62 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 006632 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PN----GRTCG 287 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 287 (637)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555556666666666666655544 45555555666666666666666666555442211 11 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 006632 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 367 (637)
.+...|...|++++|+..|+++.... |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 332 23444566677777777766643 234566777777888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.. +.+..+|..+..++...|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877754 4467788888888888888888888888888764 5567888888888888888888888888
Q ss_pred HHHHC
Q 006632 448 KMCEH 452 (637)
Q Consensus 448 ~m~~~ 452 (637)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=131.80 Aligned_cols=197 Identities=14% Similarity=0.030 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++..+..+...+...|++++|...|+++++.. |.+...+..+...+.+.|++++|+..|++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34444444444555555555555555544443 334444555555555555555555555555444322 3444455555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 186 GYGIA-----------GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 186 ~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
.+... |++++|+..|++..+.. |.+...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 55555 66666666666666543 3445566666666666666666666666666554 455566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+|...|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666655432 24455556666666666666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=149.53 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG---KIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
..+..|...|...+.++++......+.+.-...+...+..|..+|.+.| +.++|+..|++..+.| +++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3444455555555543333332222211111123335666666666666 6666777777666665 44444445555
Q ss_pred HHHHHc----CCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 326 KGFVEI----MDRDGVDEVLALMKEFRVNPDVITYSTIMNA-W--STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 326 ~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
..|... ++.++|...|+... . -+...+..+... + ...+++++|...|++..+.| +...+..|..+|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 555443 56677777777665 2 244455555555 3 45778888888888887765 667777777777
Q ss_pred HHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 399 VREQ-----EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 399 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
. .| ++++|..+|++.. +.+...+..|...|.. ..+.++|...|++..+.|. ......|...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHH
Confidence 6 44 8888888888876 3466777777777765 3488888888888887653 334445555554
Q ss_pred h----cCChhHHHHHHHHHHHCC
Q 006632 470 E----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 470 ~----~g~~~~A~~~~~~m~~~g 488 (637)
. ..+.++|..+|+...+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 346778888888777655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-14 Score=129.54 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006632 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|++...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. |.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 344555666666666666666666666666655433 55566666666666666666666666666553 344556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 006632 219 LVRAWCNE-----------KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCG 287 (637)
Q Consensus 219 li~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 287 (637)
+...+... |++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 66666655 55555555555555432 1234444555555555555555555555554443 3444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006632 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
.+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555554432 23344444444444444444444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-14 Score=146.34 Aligned_cols=342 Identities=13% Similarity=0.048 Sum_probs=239.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRF---NSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
+...+.+.|++++|++.|++..+.| ++.++..+...+...|+. ++|...|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 6778889999999999999998765 344455666667777877 8999999998853 55566677765555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006632 155 SG-----NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 155 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.+ ++++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......+ +...+..|...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC
Confidence 55 788999999999997643 36777888887766543 4555555555544 456777888888888
Q ss_pred CCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 006632 227 KNITE----AWNVMHKMAASGMKPDVVTYNTIATAYAQNG---EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE--- 296 (637)
Q Consensus 227 g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 296 (637)
+.+++ +..+++.... .++..+..|..+|...| +.++|+..|++..+.|. ++...+..|..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 85544 4444444432 24448888999999999 99999999999998875 4555557788888665
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----
Q 006632 297 -GKIKEALRFARTMKEYGVHPNLVIFNLLIKG-F--VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG----- 367 (637)
Q Consensus 297 -g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 367 (637)
+++++|+..|++.. . -+...+..+... + ...+++++|...|+...+.+ +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999987 3 455666666666 3 46889999999999998876 6777888888887 55
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSM 439 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 439 (637)
++++|...|++.. . -+...+..|..+|.. ..++++|..+|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999887 3 477888889888877 449999999999999876 34456667776664 4588
Q ss_pred HHHHHHHHHHHHCC
Q 006632 440 DRAIEVFDKMCEHG 453 (637)
Q Consensus 440 ~~A~~~~~~m~~~~ 453 (637)
.+|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 89999999888776
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=136.76 Aligned_cols=252 Identities=8% Similarity=0.031 Sum_probs=208.5
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-FNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
+.....|..+...+.+.|++++|+..|++++... +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 3456778889999999999999999999999853 3478899999999999996 999999999999986 678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-c
Q 006632 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN-E 226 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~ 226 (637)
+..++...|++++|+..|+++.+..+. +..+|..+..++...|++++|+..|+++.+.. +.+...|+.+..++.. .
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998755 78899999999999999999999999999875 5678999999999999 6
Q ss_pred CCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--
Q 006632 227 KNITEA-----WNVMHKMAASGMKPDVVTYNTIATAYAQNG--EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG-- 297 (637)
Q Consensus 227 g~~~~A-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 297 (637)
|..++| +..|++.+... +-+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 665777 58888888764 336778888888888888 688999999887 33 2345678888899998874
Q ss_pred -------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 006632 298 -------KIKEALRFARTM-KEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 298 -------~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+++|+++|+++ .+.. +.....|..+...+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258999999998 6543 334556666655544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=129.69 Aligned_cols=235 Identities=9% Similarity=-0.036 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 006632 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV--NPDVITYSTIMNAW 363 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 363 (637)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+... ......+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555555555555555555442 22333455555555555555555555555554221 11233466677777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
...|++++|+..++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 3356777778888888888888888888877663 556677777773444455888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 006632 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFG-VHPQ------KSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~eA~ 513 (637)
..|+++.+... .+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..++..+...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888877532 245677777777777777 777888887775421 1133 246777888888888888888
Q ss_pred HHHHHHhhhhc
Q 006632 514 RILSKIKNKER 524 (637)
Q Consensus 514 ~~~~~~~~~~~ 524 (637)
+.++++....|
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 88888776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-12 Score=122.64 Aligned_cols=224 Identities=13% Similarity=0.038 Sum_probs=159.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
++.++..+...+...|++++|+..|++..+ +.++.++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 455666677777778888888888887776 2355667777777777 777888888887777754 666777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006632 147 AVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 147 ~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 77777777 777777777777777764 56677777777777 777777777777777643 5566677
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006632 219 LVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 219 li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
+...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 777777777777777653 45666667777777 777777777777776653 245566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 006632 291 SGYCK----EGKIKEALRFARTMKEYG 313 (637)
Q Consensus 291 ~~~~~----~g~~~~A~~~~~~~~~~~ 313 (637)
.+|.+ .+++++|+..|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77776 677777777777776554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-13 Score=125.64 Aligned_cols=201 Identities=12% Similarity=0.080 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777777778888888888887777642 3356667777777777777777777777776654 4456666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 152 FSESGNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
|...|++++|...|+++.+.+..| +...+..+...|...|++++|...|++..... +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777766522222 34556666666666777777777776666543 344566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666665542 234555555666666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-12 Score=120.39 Aligned_cols=111 Identities=16% Similarity=0.051 Sum_probs=46.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DG 437 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 437 (637)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc
Confidence 444444444444444332 23333344444443 444444444444444332 23334444444444 44
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 006632 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMK 485 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 485 (637)
++++|+..|++..+.+ +...+..+...|.. .++.++|.+.|++..
T Consensus 201 ~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 201 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 4444444444444432 13333344444444 444444444444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-10 Score=123.23 Aligned_cols=432 Identities=8% Similarity=-0.015 Sum_probs=281.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 006632 88 PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN---MEEAMDT 164 (637)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~ 164 (637)
..+.+..|++.+..+ +-|..+|..++..+...+.++.+..+|++++.. +|.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455555555443 347778888888777777888888888887766 36667777777777777777 8888888
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHH---------
Q 006632 165 FWKMKESGL-TPTTSTYNTLIKGYGIAGKP--------EESVKLLDLMSREGNV--KPNLRTYNVLVRAWC--------- 224 (637)
Q Consensus 165 ~~~m~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~--~~~~~~~~~li~~~~--------- 224 (637)
|++.....+ +|++..|...+....+.++. +...++|+.....-+. +.+...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 888776531 36777777777665555543 2334666665543222 234567777666543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHh--CCC----C-----
Q 006632 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA-------------QNGEADQAEEVIVEMEH--NGV----Q----- 280 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~~~--~~~----~----- 280 (637)
..++++.+..+|++++......-..+|......-. ....++.|...+.++.. .++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23346677777777774311111223321111100 11233445555544321 111 1
Q ss_pred ------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHH-
Q 006632 281 ------P--N------GRTCGIIISGYCKEG-------KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVD- 338 (637)
Q Consensus 281 ------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 338 (637)
| + ...|...+..--..+ ..+....+|++.+... +-....|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 123444444332222 1234566788887653 557888888888888889988996
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 006632 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---------KP------------DAHAYSILAKG 397 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~ 397 (637)
.+|+...... +.+...|...+....+.|+++.|..+|+.++.... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988754 45677788888888899999999999999876310 13 23468888888
Q ss_pred HHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006632 398 YVREQEPEKAEELLMTMIES-GFHPNVVIFTTIISGWCSD-GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+.|..+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999876 2 22334444333333344 4589999999999876 3335666778888888899999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 476 RAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|..+|++.......++ ...|...++.-...|..+.+..+.+++....|.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999876433222 347888888889999999999999999888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-12 Score=122.83 Aligned_cols=203 Identities=13% Similarity=-0.021 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567778888889999999999999988875 567888888889999999999999999988876543 67788888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006632 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
|...|++++|.+.|+++...+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887722123456778888888889999999999998887764 3357778888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
|...++++.+... .+...+..+...+.+.|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888876543 456677778888888888888888888887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-13 Score=127.42 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD--SIFFNAVINA 151 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~ 151 (637)
.+......+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456778889999999999999998853 33566788888899999999999999999887431122 3457888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
|...|++++|+..|++..+..+. +..+|..+...|...|++++|+..|++..... +.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886543 66788899999999999999999999887763 5567788888734444559999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------hhhHHHHHHHHHhcCCHHH
Q 006632 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGE---ADQAEEVIVEMEHNG-VQPN------GRTCGIIISGYCKEGKIKE 301 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~ 301 (637)
|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..++..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988763 3346777778888888887 777888888776531 0122 2466778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 006632 302 ALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
|...|+++.+.. +.+...+..+
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhcC-ccHHHHHHHh
Confidence 888888887764 3344444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-12 Score=119.71 Aligned_cols=200 Identities=11% Similarity=-0.049 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
++..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44455555555555555555555555555431 2234445555555555555555555555554433 334444444445
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 151 AFSES-GNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
.|... |++++|...|+++.+.+..| +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 55555 55555555555544411111 13344444444444444444444444444432 2234444444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444444444443321023333333334444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-12 Score=119.14 Aligned_cols=204 Identities=8% Similarity=-0.017 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++.++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+..+. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 56788889999999999999999999999875 667889999999999999999999999999887543 7889999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006632 186 GYGIA-GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA 264 (637)
Q Consensus 186 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 264 (637)
.|... |++++|...++++...+..+.+...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998832233447889999999999999999999999998764 34688899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999887643246677888888899999999999999998765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=130.93 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN-ITEAWNVMHKMAASGMKPDVVTYNTIATAY 258 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 258 (637)
|..+...+...|++++|+..|++..... |.+..+|+.+...+...|+ +++|+..|+++++.. +-+...|+.+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444444444444444444444444432 2334444444444444443 444444444444432 12344444444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHhhH
Q 006632 259 AQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE-IMDRDGV 337 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 337 (637)
...|++++|+..|+++++... .+..+|..+..++.+.|++++|+..|+++++.. +.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 444444555544444444322 234444444444444555555555555544432 2334444444444444 2322333
Q ss_pred -----HHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------
Q 006632 338 -----DEVLALMKEFRVNPDVITYSTIMNAWSTAG--FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-------- 402 (637)
Q Consensus 338 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 402 (637)
...++..+... +.+...|..+...+...| ++++|+..+..+ +. .+.+...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 23344444332 123444444444444444 345555555554 22 1334455555555555442
Q ss_pred -CHHHHHHHHHHH
Q 006632 403 -EPEKAEELLMTM 414 (637)
Q Consensus 403 -~~~~A~~~~~~~ 414 (637)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135555555555
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=132.82 Aligned_cols=222 Identities=12% Similarity=-0.012 Sum_probs=152.1
Q ss_pred HcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 84 ERGKPQEAQAIFNNLIEGGHK---PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 160 (637)
..|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 347788899999988875321 145677778888888888888888888888765 5567888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|...|++..+..+. +..++..+...|...|++++|...|+++.... |+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888776433 56778888888888888888888888887753 333333444444556677777777776666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP---NGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
... +++...+. ++..+...++.++|...+.+........ +..++..+...|.+.|++++|...|+++...
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 542 23333333 5566666677777777776665432110 1355666666666777777777777766654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=127.30 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=134.6
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.....|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345567777888888888888888888888742 3467778888888888888888888888887764 55677777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
..|...|++++|...|+++.+.... +...+..+...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888887776432 56677777777888888888888888777653 45667777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777776653 334666777777777777777777777777664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-13 Score=126.51 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
.+.+|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 44566667777777788888888888877654 556777777777888888888888888877765432 5677777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006632 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7778888888888887777654 4566777777777777788888877777776653 335666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
+|...++++.+... .+..++..+..+|.+.|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777766532 34566677777777777777777777777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=131.00 Aligned_cols=222 Identities=14% Similarity=-0.047 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006632 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++..+...|...|++++|+..|+++.+.. +.+...|..+...+...|++++|...++.+.+..+ .+...+..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHH
Confidence 34444444444444444444444444332 22344444444444444444444444444444321 23445555555555
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIE 444 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (637)
..|++++|...++.+.+.. |+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|+.
T Consensus 123 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHH
Confidence 5555555555555555432 222222233333344566666666665555432 33333332 4444555556666666
Q ss_pred HHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 445 VFDKMCEHGVS--P-NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 445 ~~~~m~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.++++.+.... | +...+..+...+...|++++|...|+++.+ ..|+. +.....++...|++++|.+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 66655442110 0 134566666666666666666666666655 23422 122233445556666655543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-10 Score=122.96 Aligned_cols=426 Identities=9% Similarity=0.050 Sum_probs=300.7
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR---FNSIHSIMSQVEENG-MDPDS 142 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~ 142 (637)
..+.+...|..++..+.+.+.++.++.+|+++... .+.....|..-+..-.+.++ ++.+..+|++.+... .+|++
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 34578999999999999999999999999999985 45578889988888888888 999999999998763 13899
Q ss_pred HHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------hcCChHHHHHHHHH
Q 006632 143 IFFNAVINAFSESGNM--------EEAMDTFWKMKE-SGL-TP-TTSTYNTLIKGYG---------IAGKPEESVKLLDL 202 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~ 202 (637)
..|...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 9999888776665543 334578887654 455 44 4578888887654 24457889999999
Q ss_pred HHhcCCCCCC--HHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHH--CCCC---------------C----
Q 006632 203 MSREGNVKPN--LRTYNVLVRAWCN-------------EKNITEAWNVMHKMAA--SGMK---------------P---- 246 (637)
Q Consensus 203 m~~~~~~~~~--~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~--~g~~---------------~---- 246 (637)
.... |.. ..+|......-.. ..+++.|...+.++.. .++. |
T Consensus 220 aL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 220 LLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 9853 322 2344322221111 1233445555554322 1111 1
Q ss_pred -C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCC
Q 006632 247 -D---VVTYNTIATAYAQNG-------EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL-RFARTMKEYGV 314 (637)
Q Consensus 247 -~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~ 314 (637)
+ ...|...+..--..+ ..+.+..+|++.+... +.+...|...+..+...|+.++|. .+|++.....
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~- 374 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI- 374 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-
Confidence 0 134555444322222 1234567788887653 347788888899889999999997 9999998753
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC---------CC------------CHHHHHHHHHHHHHcCChhHHH
Q 006632 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV---------NP------------DVITYSTIMNAWSTAGFMDKCK 373 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~ 373 (637)
+.+...|...+......|+.+.|.++|+.+..... .| ...+|...+....+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888888999999999999998875310 12 1346777888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 374 EIFDDMGKAGIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+|....+.-......+|...+..-.+.+ +.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++....
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999987611223445554444444554 599999999999886 4667888889999888999999999999999886
Q ss_pred CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 453 GVSP--NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAE 501 (637)
Q Consensus 453 ~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 501 (637)
...+ ....|...+..-...|..+.+..+.+++.+ ..|+......+++
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTN 582 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence 4322 234788888888899999999999999976 3455443433433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-13 Score=135.18 Aligned_cols=156 Identities=15% Similarity=0.057 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006632 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----V 423 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 423 (637)
.++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+... .++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3455666666777777777777766553210 011 23566677777777777777777777654210 011 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-H
Q 006632 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN----LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-K 493 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~ 493 (637)
.++..+...|...|++++|...|+++.+... .++ ..++..+...|...|++++|...+++..+ .+..+. .
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 4666777777777777777777777654210 011 34566677777777777777777776542 221211 2
Q ss_pred HHHHHHHHHHHHcCCH
Q 006632 494 STFLLLAEARRATGLT 509 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~ 509 (637)
.++..+..++...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 2455555666555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-13 Score=135.50 Aligned_cols=279 Identities=14% Similarity=0.082 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCChh
Q 006632 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----G-VQPNGR 284 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 284 (637)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445566667777777777777777776532 122 35666777777777777777777766442 1 111234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006632 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++..+...|...|++++|+..+++..... ...+ ..+....++..+...|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~---------------~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLG---------------DRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT---------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhh---------------chHHHHHHHHHHHHHHH
Confidence 55666666666777777776666654320 0000 00011234444555555
Q ss_pred HcCC-----------------hhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 006632 365 TAGF-----------------MDKCKEIFDDMGKA----GI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-HP 421 (637)
Q Consensus 365 ~~g~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 421 (637)
..|+ +++|...+++..+. +. .....++..+...|...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 56666665554331 10 11235677788888899999999999988765310 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C
Q 006632 422 N----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PN----LKTFETLMWGYSEARQPWRAEEILQIMKAF----G 488 (637)
Q Consensus 422 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g 488 (637)
+ ..++..+...|...|++++|+..|+++.+.... .+ ..++..+...+...|++++|..++++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 237788888999999999999999988753110 11 457888899999999999999999987541 1
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 489 VHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 489 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
..+. ...+..+..++...|++++|..+++++....
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 3477889999999999999999999987553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=133.07 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHH
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVV 424 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 424 (637)
++..+...|...|++++|...++...+... ..+ ..++..+...|.+.|++++|...+++..+. +. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 344455555555555555555555443100 001 345556666666666666666666665432 11 11234
Q ss_pred HHHHHHHHHHhcCCH
Q 006632 425 IFTTIISGWCSDGSM 439 (637)
Q Consensus 425 ~~~~li~~~~~~g~~ 439 (637)
++..+...+...|+.
T Consensus 349 ~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHh
Confidence 555566666666654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-11 Score=116.02 Aligned_cols=222 Identities=9% Similarity=-0.006 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006632 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVE-------IMDR-------DGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
++|..+|++++... +.+...|..++..+.. .|+. ++|..+|+...+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776643 5566677777766653 4775 7888888888873123466788888888899
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAH-AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC-SDGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 443 (637)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988753 22343 88889999999999999999999998864 455556654444322 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG-VHP--QKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.+|+++++... -+...|..++..+...|+.++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999987532 267788888999999999999999999998752 455 35678888888999999999999999988
Q ss_pred hhhcc
Q 006632 521 NKERT 525 (637)
Q Consensus 521 ~~~~~ 525 (637)
...|.
T Consensus 269 ~~~p~ 273 (308)
T 2ond_A 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHccc
Confidence 77663
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=132.57 Aligned_cols=278 Identities=13% Similarity=0.044 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 006632 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRAWCNEKNITEAWNVMHKMAAS----GM-KPD 247 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~ 247 (637)
...+..+...+...|++++|+..|+++.+.. +.+. ..|..+...|...|++++|+..+++..+. +. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667788999999999999999999874 3343 57888999999999999999999988753 11 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 006632 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNG-----VQPNGRTCGIIISGYCKEGK-----------------IKEALRF 305 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 305 (637)
...+..+...|...|++++|...+++..... ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999876531 11124466777778888888 6666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 006632 306 ARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
+.+..+. ..... .......++..+...|...|++++|...+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5554321 11110 00112235566666777777777777777766542100
Q ss_pred -CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 006632 386 -PD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-H----PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--- 452 (637)
Q Consensus 386 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 452 (637)
.+ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|...|++..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 23677788888889999999998888765310 0 11467788888899999999999999888753
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 453 -GVSP-NLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 453 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+ ...++..+..+|...|++++|..++++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 134677888899999999999999988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-11 Score=115.62 Aligned_cols=236 Identities=8% Similarity=0.010 Sum_probs=142.7
Q ss_pred chhHHHHHHHHHHHc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHH
Q 006632 71 TVRSMTKLMNSLIER----GKP----QEAQAIFNNLIEGGHKPSLVTYTTLLAALTI-------QKRF-------NSIHS 128 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~ 128 (637)
+...|...+..-.+. ++. ++|+.+|++++... +.++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345566666554333 122 56777787777642 3466777777666643 4664 67777
Q ss_pred HHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 129 IMSQVEE-NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 129 ~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+|++.++ .. +.+...|..++..+.+.|++++|..+|++..+..+. +.. +|..++..+.+.|++++|+.+|++..+.
T Consensus 86 ~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777776 23 445566777777777777777777777777764322 233 6777777777777777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--C
Q 006632 207 GNVKPNLRTYNVLVRAWC-NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG-VQP--N 282 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~ 282 (637)
. +++...|...+.... ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| .
T Consensus 164 ~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 3 334444443333322 2567777777776666542 2345666666666666667777777776666642 232 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 283 GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
...|..++..+.+.|+.++|..+++++.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666666666666666666666666544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=108.75 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 286 CGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
|..+...|.+.|++++|+..|++.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~a 31 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKV 31 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-11 Score=108.72 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK 396 (637)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 396 (637)
+..+|..+...|...|++++|.+.|++..+..+ .+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 344555555555555666666555555555432 245555555555555566666655555555432 234455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006632 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
.+...++++.|...+.+..+.. +.+...+..+...|...|++++|++.|++..+..+ .+..++..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 5555566666666555555542 44455555555556666666666666665555432 144455555555666666666
Q ss_pred HHHHHHHHHH
Q 006632 477 AEEILQIMKA 486 (637)
Q Consensus 477 A~~~~~~m~~ 486 (637)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=127.50 Aligned_cols=277 Identities=13% Similarity=0.066 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CChh
Q 006632 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD----VVTYNTIATAYAQNGEADQAEEVIVEMEHN----GVQ-PNGR 284 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~ 284 (637)
..+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...+++.... +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3445555666777777777777777766531 12 245566666777777777777777665432 111 1134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006632 285 TCGIIISGYCKEGKIKEALRFARTMKEYGV-HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (637)
++..+...|...|++++|...+.+..+... .++.. ....++..+...|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVY 133 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHH
Confidence 455556666666666666666665543200 00100 0022344444455
Q ss_pred HHcCC--------------------hhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006632 364 STAGF--------------------MDKCKEIFDDMGKA----G-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 364 ~~~g~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
...|+ +++|...+++.... + ......++..+...|...|++++|...+++..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55555 55555555554321 1 01124467778888888899999988888876421
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 006632 419 F-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN----LKTFETLMWGYSEARQPWRAEEILQIMKAF- 487 (637)
Q Consensus 419 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 487 (637)
. .++ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 111 23778888889999999999999988875311 012 456778888999999999999999887531
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 488 ---GVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 488 ---g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+..+. ...+..+..++.+.|++++|...++++...
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11111 336778889999999999999999988654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-12 Score=123.78 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAG-----IKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
++..+...|...|++++|...+++..... ......++..+...|.+.|++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 34445555555556665555555543310 0011335556666666777777777777666653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=126.70 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=156.1
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--
Q 006632 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEG-------GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-- 136 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 136 (637)
...+.+..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|...++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345567888999999999999999999999998862 22335567888889999999999999999988764
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006632 137 ----GM-DPDSIFFNAVINAFSESGNMEEAMDTFWKMKES------GL-TPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 137 ----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
+- +....++..+...|...|++++|...|++..+. +. +....++..+...|...|++++|++.|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 223567788888888999999999998887754 11 1234567778888888888888888888876
Q ss_pred hc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHHHcCCH
Q 006632 205 RE------GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG-------MKPDV-------VTYNTIATAYAQNGEA 264 (637)
Q Consensus 205 ~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-------~~~~~-------~~~~~li~~~~~~g~~ 264 (637)
.. +..+....++..+...|...|++++|...++++.+.. ..+.. ..+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 64 1112234567778888888888888888888876521 11111 1111122222333344
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.++...+....... +.+..++..+..+|.+.|++++|...|++..+
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444443321 12344555666666666666666666665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-11 Score=122.47 Aligned_cols=233 Identities=8% Similarity=-0.019 Sum_probs=124.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----ChhhHH
Q 006632 219 LVRAWCNEKNITEAWNVMHKMAAS----GMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ-P-----NGRTCG 287 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 287 (637)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777666542 1011 1245556666666666666666666665432100 0 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHc
Q 006632 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV-NPDVITYSTIMNAWSTA 366 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 366 (637)
.+...|...|++++|+..|.+..+.. .+.+- .....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA-------------------------------EAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH-------------------------------HHcCChHHHHHHHHHHHHHHHHC
Confidence 55566666666666666665554210 00000 00112445555566666
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcC
Q 006632 367 GFMDKCKEIFDDMGK-----AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g 437 (637)
|++++|+..+++..+ ...+....++..+...|.+.|++++|...+++..+. +.+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 666666666666554 211223455666666666667776666666665432 11111223455666666666
Q ss_pred C---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 438 S---MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 438 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+ +++|+.++++. +..|+ ...+..+...|...|++++|..++++..
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 66666666554 22222 2355666777777777777777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-11 Score=122.45 Aligned_cols=231 Identities=10% Similarity=-0.032 Sum_probs=162.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC------CCCHHHHH
Q 006632 289 IISGYCKEGKIKEALRFARTMKEY----GVHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV------NPDVITYS 357 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 357 (637)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+....+... .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556666777777766666542 1011 234566666667777777777766666543210 01235677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006632 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIK-PD----AHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVVIFT 427 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 427 (637)
.+...|...|++++|...+.+..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999887653110 11 357888999999999999999999998872 22 34467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006632 428 TIISGWCSDGSMDRAIEVFDKMCEHG--V-SPN-LKTFETLMWGYSEARQ---PWRAEEILQIMKAFGVHPQ-KSTFLLL 499 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 499 (637)
.+...|...|++++|...+++..+.. . .|. ...+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999987531 0 122 2235667778888888 77777777654 33343 3367789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhh
Q 006632 500 AEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 500 ~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.++...|++++|..+++++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=128.22 Aligned_cols=214 Identities=8% Similarity=-0.056 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006632 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
+++++..++...... +.+...+..+...+...|++ ++|.+.|+...+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 34556666666666667777 77777777666654 2356677777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006632 378 DMGKAGIKPDAHAYSILAKGYVRE---------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD--------GSMD 440 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 440 (637)
+..+. .|+..++..+...|... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77765 35567777777777777 88888888888877764 55677888888888777 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 441 RAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
+|+..|+++.+.... -+...|..+..+|...|++++|+..|++..+ +.|+ ...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888774320 2667788888888888888888888888766 3444 4467777788888888888877665
Q ss_pred HH
Q 006632 518 KI 519 (637)
Q Consensus 518 ~~ 519 (637)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-11 Score=126.34 Aligned_cols=216 Identities=11% Similarity=-0.016 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006632 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP-EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++...+++...... .+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666666554432 3566777777777777777 77777777777654 445677777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCH
Q 006632 237 HKMAASGMKPDVVTYNTIATAYAQN---------GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE--------GKI 299 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 299 (637)
++..+. .|+...+..+...+... |++++|+..|++..+... .+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765 35566777777777777 777777777777776543 3566777777777777 778
Q ss_pred HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006632 300 KEALRFARTMKEYGVH---PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 376 (637)
++|+..|++..+.. + .+...|..+...|...|++++|.+.|+...+..+ .+...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877653 3 4677788888888888888888888888777653 35667777888888888888888777
Q ss_pred HHHHH
Q 006632 377 DDMGK 381 (637)
Q Consensus 377 ~~~~~ 381 (637)
..+..
T Consensus 316 ~~~~~ 320 (474)
T 4abn_A 316 GKTKP 320 (474)
T ss_dssp TTCCH
T ss_pred ccccC
Confidence 66543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-12 Score=122.84 Aligned_cols=246 Identities=12% Similarity=0.056 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006632 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHN-------GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVI 320 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 320 (637)
..++..+...+...|++++|...++++.+. ..+....++..+...|...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 345555666666666666666666665441 111223445555555555666666655555544320
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC-CCCHHHHHH
Q 006632 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA------GI-KPDAHAYSI 393 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 393 (637)
........+....++..+...|...|++++|...++++.+. +. +....++..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112344555566666666666666666665542 11 123455667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC--
Q 006632 394 LAKGYVREQEPEKAEELLMTMIES------GF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-------GVSPN-- 457 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-- 457 (637)
+...|...|++++|..+++++.+. +. +....++..+...|...|++++|...|+++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 777777778888888877777653 11 223446777777888888888888888877652 11111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 458 -----LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 458 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...+..+...+...+.+.++...++.... ..|+ ...+..++.++.+.|++++|.++++++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11222333344455666667777766543 2233 4478889999999999999999998886553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-10 Score=110.68 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH--
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK----PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFT-- 427 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-- 427 (637)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.......+ +...+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444555666666666666666665542111 123455666667777777777777777665421111 111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCH-HHH
Q 006632 428 ---TIISGWCSDGSMDRAIEVFDKMCEHGVSP---NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQK-STF 496 (637)
Q Consensus 428 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~ 496 (637)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...++.... .|..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22233567777777777777765432211 122455666777777777777777776642 2222222 255
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 497 LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..++...|+.++|...+++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56667777788888888877776544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-09 Score=107.53 Aligned_cols=160 Identities=13% Similarity=0.003 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTS----TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRA 222 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~ 222 (637)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++......-..+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445556666666655555433222221 33444455555666666666665554321001111 224445555
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHH
Q 006632 223 WCNEKNITEAWNVMHKMAAS----GMK--P-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP----NGRTCGIIIS 291 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~ 291 (637)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 56666666666666555432 111 1 12334445555666666666666665554321110 1233444555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006632 292 GYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~ 310 (637)
.+...|++++|...+++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555666666666655554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-10 Score=100.07 Aligned_cols=165 Identities=8% Similarity=0.004 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445556666666777777777776665432 2355566666666666666666666666666543 4455555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+...|++++|...|+++.+..+ .+...+..+...+...|++++|...+++..... +.+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666555432 244555555555556666666666665555542 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 006632 232 AWNVMHKMAA 241 (637)
Q Consensus 232 A~~~~~~~~~ 241 (637)
|...++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-09 Score=109.92 Aligned_cols=231 Identities=12% Similarity=0.023 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-ChhhHHH
Q 006632 220 VRAWCNEKNITEAWNVMHKMAASGM-KPD----VVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-----QP-NGRTCGI 288 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~ 288 (637)
...+...|++++|+..|++..+.-. .++ ..++..+...|...|+++.|...+.+..+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3444566666666666666553210 011 23455555566666666666666655443100 00 1234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC
Q 006632 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTAG 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 367 (637)
+...|...|++++|+..|.+..+.. .+.+.. ....++..+...|...|
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5555555566666655555543210 000000 01233445555555566
Q ss_pred ChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC
Q 006632 368 FMDKCKEIFDDMGK-----AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG----FHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 368 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~ 438 (637)
++++|...+++... .. +....++..+...|.+.|++++|...+++..+.. .+.....+..+...|...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 66666666555544 22 2224555666666666666666666666655421 11122334444445555555
Q ss_pred ---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 439 ---MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 439 ---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.+|+..+++. +..|+ ...+..+...|...|++++|...|++..
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555542 11222 2245556666666777777766666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-10 Score=112.52 Aligned_cols=309 Identities=8% Similarity=-0.038 Sum_probs=137.0
Q ss_pred HHHHHHHHH--HHcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHH--HHhcCChhHHH---------HHHHHHHHC
Q 006632 74 SMTKLMNSL--IERGKPQEAQAIFNNLIEG--GHKPS--LVTYTTLLAA--LTIQKRFNSIH---------SIMSQVEEN 136 (637)
Q Consensus 74 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~ll~~--~~~~~~~~~a~---------~~~~~~~~~ 136 (637)
.-+.|-..| ...+++++|..+++++... ....| ...|-.++.. ....+.+.... ..++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334455565 7899999999999987652 12223 3333444322 11112222222 333333221
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006632 137 GMDPDS----IFFNAVINAFSESGNMEEAMDTFWKMKESGL-TPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSREG 207 (637)
Q Consensus 137 ~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 207 (637)
..+.+. ..+......+...|++++|+..|++..+.-. .++ ..++..+...|...|++++|...+.+.....
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 100010 0122223334455666666666655543210 011 2344555555555555555555555544311
Q ss_pred CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C
Q 006632 208 NVKP-----NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ-P 281 (637)
Q Consensus 208 ~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~ 281 (637)
.-.+ ...+++.+...|...|++++|...|++..+.. .+.+.. .
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~ 220 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRF 220 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHH
Confidence 0001 12344455555555555555555555443310 000000 0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC----CCCC
Q 006632 282 NGRTCGIIISGYCKEGKIKEALRFARTMKE-----YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR----VNPD 352 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 352 (637)
...++..+..+|...|++++|+..|.+... .. +....++..+...+.+.|++++|...++...+.. .+..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 122344444444444555544444444433 21 1223344444455555555555555554443321 1111
Q ss_pred HHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 353 VITYSTIMNAWSTAGF---MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
...+..+...|...++ +.+|+..++... ..+.....+..+...|.+.|++++|...|++..+
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233444444445555 455555554411 0111233455667777777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=122.91 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=146.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.++.+|+.|...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|+..|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3457789999999999999999999999998853 3368889999999999999999999999998875 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
..+|...|++++|++.|++..+..+. +...|+.+..+|...|++++|++.|++..+.. +.+...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc
Confidence 99999999999999999999887644 67889999999999999999999999998874 5568889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAA 241 (637)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (637)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-10 Score=98.70 Aligned_cols=161 Identities=16% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 33444455555555555555555555555544322 134444555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554432 3344444445555555555555555555444432 2233444444444444444444444
Q ss_pred HHHHHH
Q 006632 270 VIVEME 275 (637)
Q Consensus 270 ~~~~~~ 275 (637)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-10 Score=121.45 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++.+|+.+..++...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..|++..+..+. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57789999999999999999999999999875 667889999999999999999999999999987644 6889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006632 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|...|++++|++.|++..+.. +.+..+|+.+...|.+.|++++|+..|++.++.. +-+...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998875 5678899999999999999999999999998864 335788899999999999999
Q ss_pred HHHHHHHHHHh
Q 006632 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=101.16 Aligned_cols=130 Identities=13% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV 399 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (637)
.+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+..++..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3333333444444444444444444333322333333334444444455555555544444432 123344444455555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 400 REQEPEKAEELLMTMIESGFHPNV-------VIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 5555555555555544432 2233 2344444455555555555555555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=101.04 Aligned_cols=196 Identities=10% Similarity=0.021 Sum_probs=155.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
++..+..+...+...|++++|+..|++.++...+++...+..+..++...|++++|...+++.++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4567888899999999999999999999986544788888889999999999999999999999875 556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTT-------STYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVR 221 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~ 221 (637)
.|...|++++|+..|++..+..+. +. ..|..+...+...|++++|++.|++..+.. |. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999887543 45 458888888999999999999999998864 33 3577888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006632 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
.|...| ..+++++...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 886554 34455555543 23444444333 344567899999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-08 Score=95.29 Aligned_cols=143 Identities=10% Similarity=-0.000 Sum_probs=60.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006632 302 ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV-NPDVITYSTIMNAWSTAGFMDKCKEIFDDMG 380 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 380 (637)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333333444444555555555555554433332 1233444444455555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 381 KAGIKP-----DAHAYSILAKG--YVREQ--EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 381 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 23 12333333333 11222 455555555554433 233222222222445555555555555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-10 Score=106.77 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=156.3
Q ss_pred HcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006632 84 ERGKPQEAQAIFNNLIE-------GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN------GM-DPDSIFFNAVI 149 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 149 (637)
..|++++|+..|++.++ ...+....++..+...+...|++++|...++++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666665544 122235667888899999999999999999998764 21 22356788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHH
Q 006632 150 NAFSESGNMEEAMDTFWKMKES-----GL--TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE------GNVKPNLRTY 216 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~ 216 (637)
..|...|++++|...|++..+. +. +....++..+...|...|++++|...|++.... ...+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 11 223567888999999999999999999998765 1112235678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCC
Q 006632 217 NVLVRAWCNEKNITEAWNVMHKMAAS-------GMKP-DVVTYNTIATAYAQNGEAD------QAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~-~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~ 282 (637)
..+...|...|++++|...++++.+. ...+ ....|..+...+...+... .+...+..... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 89999999999999999999988763 1122 2233333333333333322 22222222111 11223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 283 GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..++..+...|...|++++|..+|++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999988753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=104.44 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=60.2
Q ss_pred hcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006632 119 IQKRFNSIHSIMSQVEEN-------GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES------GL-TPTTSTYNTLI 184 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 184 (637)
..|++++|...+++.++. ..+....++..+...|...|++++|...|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345556666655554431 11122445555666666666666666666655432 11 11233455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 185 KGYGIAGKPEESVKLLDLMSRE------GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
..|...|++++|...|.+.... ...+....++..+...|...|++++|...++++.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555666665555555432 00011234444455555555555555555554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-09 Score=103.27 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC-CCC----
Q 006632 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KP--DAHAYSILAKGYVRE-QEPEKAEELLMTMIESGF-HPN---- 422 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~---- 422 (637)
.+|+.+..+|...|++++|+..+++.++... .+ -..+++.+...|... |++++|+..|++..+... ..+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555566666666666666666666543210 00 134677777888885 888888888888765310 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL------KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-- 494 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 494 (637)
..++..+...+...|++++|+..|+++.+....... ..|..+..++...|++++|+..|++..+ +.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 346777888888888888888888888875432221 1566777778888888888888888754 344321
Q ss_pred ----HHHHHHHHHH--HcCCHHHHHHHHHHHhhh
Q 006632 495 ----TFLLLAEARR--ATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 ----~~~~l~~~~~--~~g~~~eA~~~~~~~~~~ 522 (637)
.+..++.++. ..+++++|...++++...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 2344555554 446678888887776544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=7.4e-08 Score=91.17 Aligned_cols=246 Identities=9% Similarity=0.004 Sum_probs=165.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
++...-.|++..++.-...+. .......-..+.+++...|++.... .-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc--
Confidence 556667899999887433332 1223334455668888888876421 1234433433333 333322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+...-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888887655 44666777888999999999999999998866541124678888889999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 239 MAASGMKP-----DVVTYNTIATA--YAQNG--EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 239 ~~~~g~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
|.+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 45 24555556655 33334 899999999998765 244333444555888899999999998876
Q ss_pred HHCC---------CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006632 310 KEYG---------VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 310 ~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
.+.- -+.+..++..++......|+ ++.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5420 13456666555555555665 7778888887765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-07 Score=93.39 Aligned_cols=125 Identities=8% Similarity=-0.017 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS-DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+|...+..+.+.+..+.|..+|.++ +.. +.+...|......-.. .++.+.|..+|+...+.-. -++..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 55677777777788899999999998 332 2344555433332222 3369999999999987532 235556667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006632 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
..+.|+.+.|..+|+++. .....|...++.-...|+.+.+..+++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999998862 2466788888887888999999998888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-09 Score=101.53 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=121.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 255 ATAYAQNGEADQAEEVIVEMEHN----GVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
+..|...|++++|...|.+.... +-+++ ..+++.+..+|.+.|++++|+..|++.... +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 45556666666666666555432 11111 344555555555566666666555554421 11
Q ss_pred HcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCC
Q 006632 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA-GFMDKCKEIFDDMGKAGIKP-D----AHAYSILAKGYVREQE 403 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~ 403 (637)
..|+...+ ..++..+..+|... |++++|+..|++..+..... + ..++..+...|.+.|+
T Consensus 109 ~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 109 HRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 11221111 23566777788885 88888888888876531110 1 3567888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--
Q 006632 404 PEKAEELLMTMIESGFHPNV------VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------TFETLMWGYS-- 469 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~-- 469 (637)
+++|+..|++..+....... ..|..++.++...|++++|+..|++..+. .|+.. .+..++.++.
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999998876322211 15677888889999999999999988763 33321 3445566664
Q ss_pred hcCChhHHHHHHHHHH
Q 006632 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
..+++++|+..|+++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3566778888776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=83.77 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.++..|...|++++|..+++++.+.. +.+...+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 33444444444444444444443332 22334444444444444444444444444443221 12333444444444444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006632 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
++++|..+++++.+.. ..+...+..++.++.+.|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444443311 1123334444444444444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-08 Score=82.67 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=8.0
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 006632 78 LMNSLIERGKPQEAQAIFNNL 98 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~ 98 (637)
+...+...|++++|+.+|+++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~ 27 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKA 27 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHH
Confidence 333333333333333333333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-08 Score=96.08 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHH
Q 006632 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSP--NLKTFETLMWGYSEA----------RQPWRAEEILQIMKA 486 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~ 486 (637)
.+...|...|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 34445555555555555555555432110 122444444444433 444555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=90.54 Aligned_cols=126 Identities=7% Similarity=0.028 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.+...|.+.|++++|+..|++..+..+. +...+..+...|...|++++|+..|++..+.. |.+..+|..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3555666666666666666666655433 55566666666666666666666666666553 34455666666555443
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 227 KN--ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 227 g~--~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
|. ...+...++.... ..|....+..+..++...|++++|...|++.++.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 2333334433321 1122222333444445555666666666665543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-08 Score=91.29 Aligned_cols=131 Identities=9% Similarity=0.007 Sum_probs=72.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+..+|...|++++|+..|++.++.. +.+...+..+...|...|++++|...|+++.+.. |.+..+|..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 35566666666666666666666543 3356666666666666666666666666666653 445666666666655444
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006632 438 S--MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 438 ~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
. ...+...++.... ..|....+..+..++...|++++|+..|++..+ +.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 2334444444322 112222333344455556666666666666654 455544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=93.70 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-C-CCHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS---LVTYTTLLAALTIQKRFNSIHSIMSQVEENGM-D-PDSIFF 145 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 145 (637)
++..+-.+...+.+.|++++|+..|+++++.. +.+ ..++..+..++...|++++|...|+++++... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34444555555566666666666666665532 112 34555555555555666666666655555420 0 112334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 006632 146 NAVINAFSE--------SGNMEEAMDTFWKMKES 171 (637)
Q Consensus 146 ~~ll~~~~~--------~g~~~~A~~~~~~m~~~ 171 (637)
..+..++.. .|++++|+..|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444445555 55555555555555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-07 Score=85.43 Aligned_cols=241 Identities=10% Similarity=0.014 Sum_probs=187.6
Q ss_pred HHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 006632 79 MNSLIERGK-PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK--RFNSIHSIMSQVEENGMDPDSIFFNAVINAF--- 152 (637)
Q Consensus 79 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 152 (637)
+.+..+.|. .++|+.+++.++..+ +-+..+|+.--.++...+ ++++++..++.++... +.+..+|+.-...+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 344445555 469999999999853 336778999988888888 9999999999999876 66677777766666
Q ss_pred -Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006632 153 -SES---GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE--ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 153 -~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
... +++++++.+++++.+..++ +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.-.....+.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSS
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 555 7899999999999988755 8889998888888899888 9999999999875 67889998888887777
Q ss_pred CC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 006632 227 KN------ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ-AEEVIVEMEHNG--VQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 227 g~------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 297 (637)
+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++...+ -..+...+..++..|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 899999999988775 4588889988888888887544 445555554432 1246678888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 298 KIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
+.++|+++++.+.+.--+.....|+...
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999987631144555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.3e-09 Score=113.50 Aligned_cols=173 Identities=10% Similarity=-0.049 Sum_probs=137.9
Q ss_pred HHcCCHhhHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006632 329 VEIMDRDGVDEVLALMK--------EFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 329 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...|++++|.+.++... +.. +.+...+..+..++...|++++|+..++++.+.. +.+...|..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56788888988888887 433 3456778888888999999999999999988764 4477888899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006632 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
.|++++|...|++..+.. +.+...|..+..+|...|++++ +..|+++.+.+.. +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988874 5577888999999999999999 9999999886432 567888999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 006632 481 LQIMKAFGVHPQK-STFLLLAEARRATGL 508 (637)
Q Consensus 481 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 508 (637)
|+++.+ +.|+. ..+..++.++...|.
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 988765 56764 467677777766554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-06 Score=87.65 Aligned_cols=360 Identities=6% Similarity=-0.032 Sum_probs=192.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCH
Q 006632 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-FNSIHSIMSQVEEN-GM-DPDSIFFNAVINAFS----ESGNM 158 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~----~~g~~ 158 (637)
|+++.+..+|++.+.. .|+...|...+.-..+.++ .+....+|+.++.. |. +.+..+|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888887763 4677777777766666553 35566677766553 32 335667777666543 23567
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+.+..+|++........-...|......-.. .....+..++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~----------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL----------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh----------------------HHHHHHHHHHHH
Confidence 7778888877764211111122222211111 11111222211110 122223333322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 239 MAASGMKPDVVTYNTIATAYAQNG--E-----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|++++|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221100012334443333321110 0 233455666665532 23455666666666666667777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHH-HHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006632 312 YGVHPNLVIFNLLIKGFVEIMDRDGVD-EVLALMKEF--------RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA 382 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 382 (637)
. +.+...|.. |....+.++.. .+.+..... ........|...+....+.+.++.|..+|... +.
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred C--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 5 333322221 22211111111 111110000 00112345666666666778899999999988 32
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 383 GIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
...+..+|...+..-...+ +.+.|..+|+...+.- +.++..|...+......|+.+.|..+|+++. .....|
T Consensus 315 -~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 315 -EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 1234555554444333344 6999999999988752 4456667777877788899999999999872 256678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006632 462 ETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
...+..-...|+.+.+..+++++.
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888877777899988888887775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-07 Score=86.11 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 006632 126 IHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLD 201 (637)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 201 (637)
|...|++..+.| +...+..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44445555555555555555555555555543 34445555555544 4 5555555555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006632 202 LMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMK-PDVVTYNTIATAYAQ----NGEADQAEEVIV 272 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 272 (637)
+..+.+ +...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|..+|.. .+++++|..+|+
T Consensus 78 ~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 554432 44555555555554 55566666666655554311 014455555555555 555666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006632 273 EMEHNGVQPNGRTCGIIISGYCKE-G-----KIKEALRFARTMKEYG 313 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 313 (637)
+..+. ..+...+..|..+|... | ++++|+..|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65554 12334455555555442 2 5666666666665544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=109.81 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=91.9
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 83 IERGKPQEAQAIFNNLI--------EGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
...|++++|++.|++.. +. .+.+...+..+..++...|++++|...|+++++.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44556666666666655 22 12344555555555666666666666666655543 4455555555556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|++++|+..|++..+..+. +...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665554332 44555555556666666666 66666555543 3445555556666666666666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 006632 235 VMHKMAASGMKPD-VVTYNTIATAYAQ 260 (637)
Q Consensus 235 ~~~~~~~~g~~~~-~~~~~~li~~~~~ 260 (637)
.|+++.+. .|+ ...+..+..++..
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHc
Confidence 66555443 222 3344444444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-09 Score=90.84 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=102.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556677888888887776532 2234455677888888888888888888888764 56778888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 006632 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI-LQIMKAFGVHPQ-KSTFLLLAEARRATGL 508 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 508 (637)
++|+..|+++++..+. +...+..+...|...|+.++|.+. +++..+ +.|+ ...|.....++.+.|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888875422 566788888888888888776655 477666 4555 4456666666666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-07 Score=85.29 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 006632 89 QEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----NMEEAMDT 164 (637)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~~ 164 (637)
.+|++.|++..+. -++.++..+...+...+++++|...|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577788888874 477888888888888999999999999998865 67778888888887 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHh----cCCHHHHH
Q 006632 165 FWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPN---LRTYNVLVRAWCN----EKNITEAW 233 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~ 233 (637)
|++..+.| +...+..|...|.. .+++++|+..|++..+.+ ++ ...+..|...|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998865 67788888888877 789999999999998765 32 7888899999988 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhCCC
Q 006632 234 NVMHKMAASGMKPDVVTYNTIATAYAQN-G-----EADQAEEVIVEMEHNGV 279 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 279 (637)
.+|++..+. ..+...+..|..+|... | ++++|..+|++..+.|.
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999876 23455677788888754 3 89999999999887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=89.25 Aligned_cols=160 Identities=10% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 153 (637)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344555666666666666666654421 2245555556666666666666666665554432 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..+....|...|++..+..+. +...+..+...+...|++++|+..|+++.+...-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 111112234444444433221 3344444444444444444444444444433200011234444444444444444444
Q ss_pred HHHHH
Q 006632 234 NVMHK 238 (637)
Q Consensus 234 ~~~~~ 238 (637)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-08 Score=92.55 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH-HHH
Q 006632 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV-LVR 221 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-li~ 221 (637)
..+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++++.... |+...... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHH
Confidence 33444444444444444444444444443322 33444444444444444444444444444322 22221111 112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHH
Q 006632 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-NGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 300 (637)
.+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2333444444444444444332 2234444444444444455555555444444432211 1334444445555555544
Q ss_pred HHHHHHHHH
Q 006632 301 EALRFARTM 309 (637)
Q Consensus 301 ~A~~~~~~~ 309 (637)
+|...|++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-08 Score=86.75 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 006632 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG-YGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~ 189 (637)
..+...+...|++++|...|+++++.. |.+...+..+...+...|++++|+..|++.....+ +...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344455556666666666666655443 44555666666666666666666666666554432 33322222111 112
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 268 (637)
.+...+|+..|++..+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222333555555555543 3345556666666666666666666666655543221 2334555555566666666665
Q ss_pred HHHHHH
Q 006632 269 EVIVEM 274 (637)
Q Consensus 269 ~~~~~~ 274 (637)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-06 Score=82.15 Aligned_cols=217 Identities=9% Similarity=0.043 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 006632 124 NSIHSIMSQVEENGMDPDSIFFNAVINAFSESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGY----GIA---GKPE 194 (637)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 194 (637)
++|+.++++++..+ |.+..+|+.--..+...+ ++++++..++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 46666666666654 445556666666666666 666666666666665443 445555444443 333 4555
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT--EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
+++.+++.+.... +.+..+|+--.-.+.+.|.++ ++++.++++.+.
T Consensus 128 ~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------------------------------ 175 (306)
T 3dra_A 128 REFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------------------------------ 175 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh------------------------------
Confidence 5555555555543 445555555544444444444 444444444443
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh-HHHHHHHHh
Q 006632 273 EMEHNGVQPNGRTCGIIISGYCKEGK------IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG-VDEVLALMK 345 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~ 345 (637)
.+ .|...|+.....+.+.+. ++++++.+++++... +.|...|+.+...+.+.|+... +..+...+.
T Consensus 176 -----d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 176 -----DL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp -----CT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred -----CC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 22 233334333333333332 566666666666554 4566666666666655555332 333444333
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006632 346 EFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 346 ~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
..+ -..+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 221 123445555555555555555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-07 Score=85.29 Aligned_cols=187 Identities=12% Similarity=0.019 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK-P-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDS---IFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 146 (637)
+..+..+...+.+.|++++|+..|++++..... | ...++..+..++...|++++|...|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 345566778889999999999999999874321 1 13577888899999999999999999998764 2222 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006632 147 AVINAFSE------------------SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 147 ~ll~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+...+.. .|++++|...|+++.+..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 34566666666666654322 222222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006632 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
......+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|++++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567788889999999999999887632111 24677888899999999999999998877643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=87.20 Aligned_cols=142 Identities=7% Similarity=-0.025 Sum_probs=92.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 80 NSLIERGKPQEAQAIFNNLIEGGHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
..+...|++++|+..++..... .| +...+..+...|...|++++|...|+++++.. +.+..+|..+...|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3444566777777777776542 22 33445566777777777777777777777765 55677777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006632 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKL-LDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
++|+..|++..+..+. +..+|..+...|.+.|+.++|.+. +++..+.. |.+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 7777777777766533 566777777777777777665544 46665543 445666666555555554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-08 Score=91.73 Aligned_cols=158 Identities=6% Similarity=-0.034 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHH
Q 006632 322 NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI-LAKGYVR 400 (637)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 400 (637)
..+...+...|++++|...++...+..+ .+...+..+...+...|++++|...++.+.... |+...... ....+.+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHh
Confidence 3333333444444444444444433321 233334444444444444444444444443321 22221111 1112333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006632 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.++.++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.++|..
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 344444444444444432 3344444444444444444444444444444432110 12344444444444454444444
Q ss_pred HHHH
Q 006632 480 ILQI 483 (637)
Q Consensus 480 ~~~~ 483 (637)
.+++
T Consensus 277 ~~r~ 280 (287)
T 3qou_A 277 XYRR 280 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-07 Score=85.43 Aligned_cols=186 Identities=10% Similarity=-0.011 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHH
Q 006632 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD--VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYSI 393 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 393 (637)
...+..+...+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|+.+++...... ..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455556667777777777777777766432211 34566667777777777777777777776432111 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-------------- 459 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------------- 459 (637)
+..++.+.+.. .+ ..|..+...+...|+.++|+..|+++++.. |+..
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHH
Confidence 44444432100 00 000011111122344444444444444421 2211
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 460 ----TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ----KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 460 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
....+...+...|++++|+..|+++.+ ..|+ ...+..++.++.+.|+.++|.+.++.+....|
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 113456778889999999999999876 3344 24678889999999999999999988765544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=100.58 Aligned_cols=154 Identities=12% Similarity=-0.027 Sum_probs=118.6
Q ss_pred cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006632 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
.|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467889999999987765 3467889999999999999999999999998874 44688999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 006632 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA---RQPWRAEEILQIMKAF 487 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 487 (637)
+++..+.. +.+...+..+..+|...|++++|++.|+++.+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 66788999999999999999999999999988643 2577888999999999 9999999999998763
Q ss_pred C
Q 006632 488 G 488 (637)
Q Consensus 488 g 488 (637)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=100.76 Aligned_cols=154 Identities=8% Similarity=-0.091 Sum_probs=112.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 85 RGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 164 (637)
.|++++|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887642 3367788888888888899999999999888765 56678888888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006632 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAA 241 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 241 (637)
|++..+..+. +...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888876543 67788888888889999999999998888764 45678888888888888 888899888888877
Q ss_pred CC
Q 006632 242 SG 243 (637)
Q Consensus 242 ~g 243 (637)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=91.73 Aligned_cols=155 Identities=12% Similarity=-0.023 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAG--I-KP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFH-PN----VV 424 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 424 (637)
++..+...|...|++++|+..|++..+.- . .+ ...++..+...|.. |++++|+..|++..+.... .+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 45555666666677777776666654320 0 11 13466677777777 8888888888877653100 01 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----H--
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ----K-- 493 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~-- 493 (637)
++..+...|...|++++|+..|++..+. +..+. ...+..++.++...|++++|...|++.. +.|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCCCCCHHH
Confidence 6778888888889999999888888753 11111 2256666777777899999999888876 2332 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 006632 494 STFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~ 514 (637)
.....++.++ ..|+.+.+..
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 1233444444 5677666555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.2e-06 Score=79.20 Aligned_cols=231 Identities=8% Similarity=0.030 Sum_probs=170.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
+.+-....+.+..++|+++++.++..+ +-+..+|+.--.++...+ .+++++..++.++... +.+..+|+.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333333444556679999999999853 337778998888888888 5999999999999876 7788889988888877
Q ss_pred c-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006632 155 S-G-NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE--------ESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 155 ~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
. + ++++++.+++++.+..+. +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 7 7 889999999999988655 7888888777777767666 8999999999875 678999999988888
Q ss_pred hcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhC
Q 006632 225 NEKN-------ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA--------------------DQAEEVIVEMEHN 277 (637)
Q Consensus 225 ~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~ 277 (637)
+.+. ++++++.++++.... +-|...|+.+-..+.+.|.. ........++...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 8876 788999998888764 44788888777777776654 1222222222221
Q ss_pred C-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 278 G-----VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 278 ~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
. -.++...+..+++.|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 0245566677778888888888888888877643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.6e-07 Score=81.44 Aligned_cols=127 Identities=11% Similarity=-0.081 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.+...+...|++++|...|++.. .|+..+|..+...|...|++++|+..|++..+... .+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 34444455555555555555442 34455555555555555555555555555554321 23444555555555555
Q ss_pred ChhHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 473 QPWRAEEILQIMKAFG--------------VHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g--------------~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
++++|+..|++..+.. ..|+ ...+..++.++...|++++|...++++....|
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 5555555555554321 1111 23555666666666666666666666665544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-07 Score=78.68 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|+..|+++.+..+. ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 4455666666667777777777777766653 556666777777777777777777777777664322 45566666667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006632 468 YSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
|...|++++|+..|++..+ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 7777777777777766665 345543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=89.65 Aligned_cols=155 Identities=10% Similarity=0.026 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-----CHH
Q 006632 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRV---NP--DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-----DAH 389 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ 389 (637)
+|+.+...|...|++++|...+++..+... .+ -..++..+...|.. |++++|+..|++........ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 455555566666666666666665433210 11 13456677777777 88888888888876531111 146
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----H--
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIES----GFHPN-VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN----L-- 458 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~-- 458 (637)
++..+...|.+.|++++|+..|++..+. +..+. ...+..++.++...|++++|+..|++.. .. |+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHH
Confidence 7888899999999999999999988763 11111 2366677778888899999999999988 42 32 1
Q ss_pred HHHHHHHHHHHhcCChhHHHH
Q 006632 459 KTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.....++.++ ..|+.+...+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 1344455544 4566554444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.7e-07 Score=74.57 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+......|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++|+..|++.++.+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345555666666666666666666666553 45566666666666666666666666666666432 2455666666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
...|++++|++.|++..+ +.|+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~ 113 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPS 113 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHCCCHHHHHHHHHHHHH--HCcC
Confidence 666666666666666655 3444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.6e-06 Score=78.66 Aligned_cols=165 Identities=9% Similarity=-0.019 Sum_probs=124.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 006632 358 TIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFT 427 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~ 427 (637)
..+..+...|++++|..+++...+... .|+ ...+..+...+...+++++|+..|+++.+... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677889999999999999887421 122 11334567777788899999999999987422 223 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHH
Q 006632 428 TIISGWCSDGSMDRAIEVFDKMCE----H-GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTF 496 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 496 (637)
.++..|...|++++|+..|+++.+ . +..+.. .++..++..|...|++++|+.++++..+ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 222222 3688899999999999999999988753 333334 5688
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhhh
Q 006632 497 LLLAEARRATGL-TKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~-~~eA~~~~~~~~~~ 522 (637)
..++.++.+.|+ +++|.+.++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 69999999988644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-06 Score=76.21 Aligned_cols=126 Identities=15% Similarity=0.043 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006632 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 146 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+...+...|++++|...|++.. .|+..+|..+...|...|++++|+..|++..... +.+...|..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence 344455556666666666666553 3455666666666666666666666666666543 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006632 226 EKNITEAWNVMHKMAASGMK--------------P-DVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|++++|+..|++..+.... | ....+..+..+|...|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666666653211 0 1245566666666777777777777666654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-06 Score=81.67 Aligned_cols=192 Identities=8% Similarity=-0.066 Sum_probs=110.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHhhHHHHHHHHhhC------------CC------
Q 006632 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLL-------IKGFVEIMDRDGVDEVLALMKEF------------RV------ 349 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~------------~~------ 349 (637)
..++...|.+.|.++.... +.....|..+ ...+...++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777776654 4455666666 34444444444444444433321 10
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 006632 350 --NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVI 425 (637)
Q Consensus 350 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 425 (637)
..-..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0002233445556667777777777777766543 333355556666777777777777776554321 110 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 66667777777777777777777764322143 23455566667777777777777777765 4455
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-06 Score=71.22 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
+..+...|.+.|++++|++.|++.++.. +.++.+|..+..++...|++++|+..+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3333344444444444444444433321 1233333333333334444444444443333332 2233333333333333
Q ss_pred cCCHHHHHHHHHHHH
Q 006632 155 SGNMEEAMDTFWKMK 169 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~ 169 (637)
.|++++|+..|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 333333333333333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-05 Score=74.58 Aligned_cols=190 Identities=8% Similarity=0.017 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+.+..........++|+.++++++..+ +.+..+|+.--..+...| .+++++..++.+....++ +..+|+.-...+..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 333333334445568888888888876 666777888777777777 488888888888887655 77778777777766
Q ss_pred c-C-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006632 190 A-G-KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 190 ~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
. + ++++++++++++.... +.|..+|+--.-.+.+.+.++. .+. ..+.++
T Consensus 136 l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~--------------~~~-------------~~~~eE 186 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGR--------------ISE-------------AQWGSE 186 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTC--------------CCH-------------HHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccc--------------cch-------------hhHHHH
Confidence 6 6 7788888888887764 5677777765555444443330 000 001244
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006632 268 EEVIVEMEHNGVQPNGRTCGIIISGYCKEGK-------IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
++.++++.+..+ .|...|+.....+.+.+. ++++++.+++++... +-|...|+-+-..+.+.|.
T Consensus 187 Le~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 187 LDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 444444444332 244444444444444433 566677776666553 4566666665555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-06 Score=74.33 Aligned_cols=130 Identities=11% Similarity=0.018 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 455666677777777777777777776653 45677777777777777788888887777776532 2566777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHH--HHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTF--LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~--~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...|++++|...|+++.+. .|+ ...+ ...+..+...|++++|...+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7788888888888777652 232 3333 33444466778888888888777554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-06 Score=78.97 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=68.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 006632 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PD----VVTYNTI 254 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 254 (637)
+..+...|++++|..++++........|+. ..+..+...+...+++++|+..|+++...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566667777777766665532111221 12223445555556666666666666653211 11 2246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 255 ATAYAQNGEADQAEEVIVEMEH----N-GVQP-NGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666666666666666666552 1 1111 12345556666666666666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=69.89 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|+.+|+++.+... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 344444444445555555555555444432 33444444445555555555555555555444321 2344444445555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006632 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-06 Score=73.66 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 006632 76 TKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
..+...+...|++++|+..|++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al 40 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAI 40 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 333333333444444444443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-06 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...|..+...+...|++++|++.|+++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555666666666665555432 2244455555555555555555555555555443 3344445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006632 152 FSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~ 171 (637)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-06 Score=80.83 Aligned_cols=167 Identities=8% Similarity=-0.017 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 006632 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AHAYSILAKGYVREQEPEKAEELLMTMIESGF---HPN--VVI 425 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 425 (637)
+...+..+...|++++|...+....+...... ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777888888888777666432111 12234455667778889999998888875321 112 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPN-----LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KS 494 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~ 494 (637)
|+.++..|...|++++|+..|+++.+. ...|+ ..++..++.+|...|++++|+.++++..+ .+.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888999999999999999888731 01122 14788888899999999999999988753 122222 55
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHhhh
Q 006632 495 TFLLLAEARRATGLTKEA-KRILSKIKNK 522 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 522 (637)
.|..++.++.+.|+.++| ...++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788889999999999999 7778877544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-07 Score=78.91 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++.+... .+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3444445555555566666666665555543 44555555555555555666666666655555322 134455555555
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 006632 468 YSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-06 Score=78.26 Aligned_cols=165 Identities=8% Similarity=-0.073 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HH
Q 006632 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KPD--AH 389 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 389 (637)
.+...+..+...|++++|.+.+....+.....+. ..+..+...+...|++++|+..+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666777777777777766654322111 2233455667788899999999998875321 112 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIE---SGFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN- 457 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 457 (637)
+++.+...|...|++++|...|+++.+ .. +.+ ..++..++..|...|++++|+..+++..+. +....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 888999999999999999999998873 21 222 258889999999999999999999998753 11111
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006632 458 LKTFETLMWGYSEARQPWRA-EEILQIMK 485 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 485 (637)
..+|..+..+|...|+.++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788999999999999999 77777764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.4e-07 Score=79.38 Aligned_cols=119 Identities=9% Similarity=0.087 Sum_probs=65.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 006632 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG-WCSDGSM--DR 441 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 441 (637)
..|++++|...++...+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455556666665555442 3345566666666666666666666666665543 3455555555555 5556665 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 442 AIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|+..|+++.+... .+...+..+...+...|++++|...|+++.+
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666665432 1344555566666666666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.2e-07 Score=80.39 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=105.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 438 (637)
...|++++|.++++.+.. .......++..+...|...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777775544433 12234667777788888888888888888877651 11 1234567778888888888
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcC
Q 006632 439 MDRAIEVFDKMCEH----GVSP--NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 439 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g 507 (637)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+ .+..+. ...+..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887653 1111 123577778888888999999888887753 121111 224577888899999
Q ss_pred CHHHHHHHHHHHhhh
Q 006632 508 LTKEAKRILSKIKNK 522 (637)
Q Consensus 508 ~~~eA~~~~~~~~~~ 522 (637)
++++|.+.+++....
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=74.09 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...+..+...+.+.|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34567777788888999999999999888764 4578888889999999999999999999988874 567788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006632 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLK 459 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (637)
+|...|++++|+..|+++.+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999998884 36654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=70.47 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=94.1
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.++..|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345667888888999999999999999999988753 3467788888888888889999998888888765 55677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
.+...+...|++++|...|++..+..+. +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 8888888888888888888887765432 4456666666665544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-06 Score=78.39 Aligned_cols=130 Identities=8% Similarity=-0.013 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 006632 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD--VVTYNTIAT 256 (637)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~ 256 (637)
.+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 34445666677777777777777766543 433355556667777777777777776554321 111 235566777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 257 AYAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777888888887777764332132 235556667777778888888888777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=7.6e-07 Score=85.09 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006632 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVR 221 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 221 (637)
...+..+...+.+.|++++|+..|++..+..+. +...|..+...|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344455555555566666666666555554322 45555556666666666666666666655542 344555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006632 222 AWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~ 241 (637)
++...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-06 Score=70.75 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG--VSPN----LKTFE 462 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~ 462 (637)
..+..+...+.+.|++++|+..|++.++.. |.+..+|..+..+|...|++++|+..|++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777776653 4556677777777777777777777777766531 1111 12455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
.+..++...|++++|++.|++..+ ..|+.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 566666677777777777766654 34555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-06 Score=69.08 Aligned_cols=120 Identities=13% Similarity=-0.008 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+.+..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 345566666777777777777777777776532 3356666666667777777777777777766653 44566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
..+...|++++|...|++..+..+. +...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666667777777766666655332 45556666666655554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=68.70 Aligned_cols=115 Identities=13% Similarity=0.062 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 34444444444444555554444444432 23444444444444455555555555544444321 12334444444455
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 006632 470 EARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGL 508 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 508 (637)
..|++++|...|++..+. .| +...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555444431 22 23334444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=78.36 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=91.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC
Q 006632 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN----GM-DPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~ 157 (637)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888888885555543 22235667777778888888888888888877652 11 1123456667777777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcC
Q 006632 158 MEEAMDTFWKMKES----GLTP--TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN----LRTYNVLVRAWCNEK 227 (637)
Q Consensus 158 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g 227 (637)
+++|...+++..+. +-.+ ...++..+...+...|++++|...+++.........+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777765542 1011 1334566666777777777777777665432100111 123455555666666
Q ss_pred CHHHHHHHHHHHH
Q 006632 228 NITEAWNVMHKMA 240 (637)
Q Consensus 228 ~~~~A~~~~~~~~ 240 (637)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.9e-05 Score=73.09 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=84.4
Q ss_pred hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 006632 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG--FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE-PEKAEELL 411 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 411 (637)
+++..++..+....+ .+..+|+.-...+...+ .+++++.++..+.+.. +.|..+|+--...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444444332 24455554444444444 2556666666665543 3355555555555555555 46666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 006632 412 MTMIESGFHPNVVIFTTIISGWCSD--------------GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA------ 471 (637)
Q Consensus 412 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 471 (637)
.++++.. +.|...|+.....+... +.++++++.+++++...+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 6666554 45666666555544443 3466777777777664432 555565554444443
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCH
Q 006632 472 -----RQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 472 -----g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+.++++++.++++.+ +.|+.
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred chHHHHHHHHHHHHHHHHHh--hCccc
Confidence 346677777777776 55664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-06 Score=69.26 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555666666666666666666666553 445666666666666666666666666666654321 345566666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006632 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-06 Score=75.51 Aligned_cols=121 Identities=7% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 006632 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FSESGNM--E 159 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~ 159 (637)
...|++++|+..|++..... +.+...|..+..++...|++++|...|+++.+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 46677777777777766542 3356667777777777777777777777766654 4455556666655 5566665 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+|...|++..+..+. +...+..+...|...|++++|...|++....
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666655332 4555566666666666666666666666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-06 Score=69.95 Aligned_cols=97 Identities=4% Similarity=-0.015 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|+..|++..+..+. +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3444455555555555555555555555432 334444555555555555555555555554443221 34444444444
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006632 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|.+.|++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=8.4e-07 Score=84.77 Aligned_cols=97 Identities=7% Similarity=-0.005 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|...+++..+..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344444555555555555555555555443 334555555555555555555555555555554322 44555555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006632 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|+..|.+...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5566666666655555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00018 Score=69.09 Aligned_cols=182 Identities=6% Similarity=0.001 Sum_probs=119.4
Q ss_pred hhHHHHHHHHH---HHcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCC
Q 006632 72 VRSMTKLMNSL---IERGKPQ-EAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR----------FNSIHSIMSQVEENG 137 (637)
Q Consensus 72 ~~~~~~l~~~~---~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 137 (637)
+..|..+.+.+ .+.|.+. +|+.+++.++..+ +-+..+|+.--..+...+. +++++..++.++...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44454444433 3566665 7899999888743 2356667766555544333 567777777777765
Q ss_pred CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCHH
Q 006632 138 MDPDSIFFNAVINAFSESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK-PEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
+-+..+|+.-...+.+.+ .+++++.+++++.+..+. |..+|+.-.-++...|. ++++++.++++.+.. +.|..
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S 180 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS 180 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH
Confidence 667777877777777777 378888888888877654 77777777777777777 478888888887764 56777
Q ss_pred HHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 215 TYNVLVRAWCNE--------------KNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 215 ~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
+|+.....+.+. +.++++++.+....... +-|...|+.+-..+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 777766665544 34666777776666553 335556654443333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=74.03 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|++.....+. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33334444444444444444444444433 334444444444444444444444444444443322 3344444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 006632 189 IAGKPEESVKLLDLMSR 205 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~ 205 (637)
..|++++|+..|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.4e-06 Score=81.40 Aligned_cols=131 Identities=13% Similarity=0.013 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN---------------VVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
...+..+...|.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..|+++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555566666666655555542 222 467777777778888888888888877775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHHhhh
Q 006632 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEA-KRILSKIKNK 522 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 522 (637)
.. .+...+..+..+|...|++++|+..|+++.+ +.|+ ...+..+..++.+.|+.++| ..++++|..+
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2566777777788888888888888877766 3444 45677777778888888777 4466666544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-06 Score=81.57 Aligned_cols=87 Identities=7% Similarity=-0.144 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..+..+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. |.+...+..+..+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 44555555555555555555555555554322 44555555555555555555555555555543 3345555555555
Q ss_pred HHhcCCHHHH
Q 006632 223 WCNEKNITEA 232 (637)
Q Consensus 223 ~~~~g~~~~A 232 (637)
+.+.|+.++|
T Consensus 274 ~~~~~~~~~a 283 (336)
T 1p5q_A 274 QQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-06 Score=71.49 Aligned_cols=94 Identities=10% Similarity=-0.041 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++.+... .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 33444445555555555555555555442 34455555555555555555555555555554332 13344455555555
Q ss_pred hcCChhHHHHHHHHHH
Q 006632 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
..|++++|...|+...
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.9e-06 Score=66.42 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777888888889988888887764 4467888888888999999999999999888864 5678888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006632 433 WCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~ 452 (637)
+...|++++|+..|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999888874
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-06 Score=68.60 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPN----LKTFE 462 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 462 (637)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|+++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666666666666666666543 44566666666666666667776666666655321 112 44566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+..++...|++++|...|+++.+ ..|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 666666667777777777666655 334444443333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=63.69 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345555555666666666666666655542 34555566666666666666666666666655432 1445555666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006632 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-05 Score=65.76 Aligned_cols=97 Identities=13% Similarity=-0.053 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555555555556666666666666555543 344555555555566666666666666655553321 3445555555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 006632 467 GYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~ 485 (637)
++...|++++|+..|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5556666666665555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-05 Score=62.69 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 006632 77 KLMNSLIERGKPQEAQAIFNNL 98 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~ 98 (637)
.+...+...|++++|+..|++.
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~ 30 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEA 30 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 3333333334444444433333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-05 Score=69.11 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
+...+..+...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|+++++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666667777777777777777766653 446667777777777777777777777777664322 4556666777
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 006632 467 GYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~~ 486 (637)
++...|++++|+..|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-06 Score=67.10 Aligned_cols=92 Identities=7% Similarity=-0.049 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34445555566666666666655543 345555555555666666666666666665553321 3445555555555666
Q ss_pred ChhHHHHHHHHHHH
Q 006632 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-05 Score=68.13 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=54.7
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|+++++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345555555666666666666666666655532 2245555555555555555555555555555543 33455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006632 150 NAFSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~ 171 (637)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-05 Score=66.10 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006632 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF--HPN----VVIFT 427 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 427 (637)
..+..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777788888888888888877653 44677788888888888888888888888776421 122 66788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+..++...|++++|...|+++.+. .|+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 8888888888999999988888874 3566555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-05 Score=70.08 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006632 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD---------------AHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
+..+...+...|++++|...|++..+...... ..++..+..+|.+.|++++|+..+++..+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 34444445555555555555555554321100 1455555556666666666666666655542 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006632 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
.+...+..+..+|...|++++|+..|++..+... -+...+..+..++...++.+++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666655321 13444555555554444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-05 Score=64.00 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQV 133 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 133 (637)
+..|...+.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|+..+++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444443321 113333333444444444444444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-05 Score=70.07 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----------------VTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
....+..+...+.+.|++++|+..|++.+..... +. .++..+..++...|++++|...+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455666677777778888888888777763211 11 344444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 135 ENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 135 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 170 (637)
+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 432 33344444444444444444444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-05 Score=66.03 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...+..+...+.+.|++++|+..|+++...+ +.+...|..+..++...|++++|...|+++++.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3334444444444555555555554444421 2234444444444444444444444444444433 3333444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006632 152 FSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~ 170 (637)
|...|++++|...|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=63.75 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP--NLKTFETLMWGY 468 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~ 468 (637)
+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|+++.+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444555544444444432 3334444444444444444444444444444431 11 233444444444
Q ss_pred Hhc-CChhHHHHHHHHHH
Q 006632 469 SEA-RQPWRAEEILQIMK 485 (637)
Q Consensus 469 ~~~-g~~~~A~~~~~~m~ 485 (637)
... |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 44444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-05 Score=63.93 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 351 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.+...+..+...+...|++++|...|....... +.+...+..+...|...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467778888888888999999999998887764 4467888888899999999999999999988864 56788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006632 431 SGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+|...|++++|+..|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-05 Score=64.21 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=84.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS----LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF 144 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (637)
..+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 456777888889999999999999999999874 455 5677777788888888888888888877764 456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 145 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+..+..+|...|++++|...|++..+..+. +...+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 777778888888888888888887765422 344444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-05 Score=63.45 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444444555555555555555555443 222 3444444555555555555555555544432 334444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006632 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=63.14 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP--DSIFFNAVINA 151 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 151 (637)
.|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555666666666666666655532 2244555555555555566666666555555543 33 44555555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 006632 152 FSES-GNMEEAMDTFWKMKES 171 (637)
Q Consensus 152 ~~~~-g~~~~A~~~~~~m~~~ 171 (637)
+... |++++|.+.|++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-05 Score=64.21 Aligned_cols=95 Identities=6% Similarity=-0.011 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
+..+...+.+.|++++|+..++..++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445567778888888888888888764 4477888888888888899999999888888764 5577788888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006632 436 DGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (637)
.|++++|+..|+++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88999999988888764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-05 Score=67.04 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN----L 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 458 (637)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566677777778888888887777654310 011 13677778888888888888888888764210 012 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 459 KTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..+...+...|++++|...+++..+ .+..+. ...+..+..++...|++++|.+.+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4577778888889999999988887753 221111 235777888899999999999999887644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.6e-05 Score=66.31 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIES--------G---------FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+......+.+.|++++|+..|.+.++. . .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445555566666666666666655542 0 0223345666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.. .+...|..+..++...|++++|...|++..+
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 2455666666666666666666666666655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-05 Score=77.79 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPN---------------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
..+..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..|+++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555556666666666666666655532 222 5778888888888999999999998888764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH-HHHHH
Q 006632 454 VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR-ILSKI 519 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~-~~~~~ 519 (637)
. .+...|..+..+|...|++++|+..|+++.+ +.|+.. .+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2667888888889999999999999988876 556543 67778888888888877764 34444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.6e-05 Score=60.83 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLMWG 467 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~ 467 (637)
+...+.+.|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444455555555555555555432 2222 34444555555555555555555555543211 1 3344445555
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 006632 468 YSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00026 Score=72.01 Aligned_cols=198 Identities=12% Similarity=-0.009 Sum_probs=115.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 006632 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNG----------------RTCGIIISGYCKEGKIKEALRFARTMKEYG-VHP 316 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 316 (637)
-...+.+.|++++|++.|..+.+....... ..+..++..|.+.|++++|.+.+..+...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999888875432211 125667788888888888888887765421 011
Q ss_pred CHH----HHHHHHHHHHHcCCHhhHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCC
Q 006632 317 NLV----IFNLLIKGFVEIMDRDGVDEVLALMKE----FRVNPD-VITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIK 385 (637)
Q Consensus 317 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~ 385 (637)
+.. +.+.+...+...|+++.+..++..... .+..+. ..++..+...|...|++++|..+++.+... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 122222233345666777776665432 222222 345566667777777777777777765432 111
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 386 ---PDAHAYSILAKGYVREQEPEKAEELLMTMIES--GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 386 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
....++..++..|...|++++|..++++.... .+..+ ...+..++..+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11345666667777777777777777665431 11111 23445555566666777777777766655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00012 Score=61.44 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP------NL-----KTFETLMWGYSEARQPWRAEEILQIMKAF-----G 488 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g 488 (637)
.+......+...|++++|+..|++.++..... +. ..|..+..++...|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666532110 22 27777788888888888888888877662 1
Q ss_pred CCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 489 VHPQKS-TF----LLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 489 ~~p~~~-~~----~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+.|+.. .| .....++...|++++|+..+++..+..|
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 277754 67 8888999999999999999988866644
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0003 Score=71.63 Aligned_cols=196 Identities=9% Similarity=-0.024 Sum_probs=97.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCC-C
Q 006632 289 IISGYCKEGKIKEALRFARTMKEYGVHPN----------------LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-P 351 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 351 (637)
-...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35567788888888888888876542111 113455666666666666666666655432111 1
Q ss_pred CHH----HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 006632 352 DVI----TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIES--GF- 419 (637)
Q Consensus 352 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~- 419 (637)
+.. +.+.+...+...|+.+.+..++..... .+..+ -..++..|+..|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 122222233344556666666655432 11111 1344555566666666666666666555432 10
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 420 -HP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GV-SP-N--LKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 420 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..++..+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 1234555555566666666666666555421 11 11 1 123344444455555666655555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00013 Score=76.63 Aligned_cols=189 Identities=7% Similarity=-0.009 Sum_probs=130.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE----------PEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
..-++|++.++.++... +.+..+|+.-...+.+.|+ ++++++.++++.+.. +.+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34457788888888764 3466777777777766666 899999999998875 77889999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006632 437 G--SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 437 g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
| +++++++.++++.+...+ |...|..-..++.+.| .++++++.++++.+.... +...|.....++.+.+...++.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 9 779999999999987654 7888998888888888 888999999888764333 4567777766666542110000
Q ss_pred HHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006632 514 RILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
.......+..+.+...+.++++.+|++.. ++..+.+++...++.++
T Consensus 199 ---------~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 ---------PQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ---------SCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred ---------ccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence 00000011223444455566666776655 34457777777777655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.4e-05 Score=75.15 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006632 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLA 500 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 500 (637)
+..+|..+..+|.+.|++++|+..++++++... .+...+..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 445677777777777777777777777776432 2456777777777777777777777777765 3343 44555566
Q ss_pred HHHHHcCCHHHHHH
Q 006632 501 EARRATGLTKEAKR 514 (637)
Q Consensus 501 ~~~~~~g~~~eA~~ 514 (637)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=64.01 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=50.9
Q ss_pred cCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006632 366 AGFMDKCKEIFDDMGKAG--IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
.|++++|+..|++.++.+ -+.+..++..+...|.+.|++++|+..|++..+.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234556666666666666666666666666653 445666666666666666667776
Q ss_pred HHHHHHHHC
Q 006632 444 EVFDKMCEH 452 (637)
Q Consensus 444 ~~~~~m~~~ 452 (637)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.3e-05 Score=65.34 Aligned_cols=133 Identities=14% Similarity=0.012 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006632 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-PD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----V 423 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 423 (637)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666677777777777777766542100 11 24677778888888888888888887664210 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.++..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777888888999999999999887643 21111 34577788888999999999999888753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00032 Score=57.27 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=10.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 006632 79 MNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
...+.+.|++++|+..|+.+.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~ 30 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLE 30 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.95 E-value=9.7e-05 Score=75.78 Aligned_cols=88 Identities=8% Similarity=-0.090 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..|..+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 45555556666666666666666666555432 45556666666666666666666666665543 3344555566666
Q ss_pred HHhcCCHHHHH
Q 006632 223 WCNEKNITEAW 233 (637)
Q Consensus 223 ~~~~g~~~~A~ 233 (637)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=80.30 Aligned_cols=157 Identities=13% Similarity=0.015 Sum_probs=108.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
..+.+.|++++|+..+++..+.. +.+..++..+...|.+.|++++|+..+++..+.. +.+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567788999999998888763 4468888889999999999999999999998874 567888889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHHHC-----CC-----CCCHHHHH
Q 006632 441 RAIEVFDKMCEHGVSPNLKTFETLMWG--YSEARQPWRAEEILQ-----------IMKAF-----GV-----HPQKSTFL 497 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~m~~~-----g~-----~p~~~~~~ 497 (637)
+|++.|+++.+.... +...+..+..+ +...|++++|++.++ +..+. +. ..+...+.
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 999999998875322 33345555444 778899999999887 32210 00 12344566
Q ss_pred HHHHHHHHcCCHH--HHHHHHHHHh
Q 006632 498 LLAEARRATGLTK--EAKRILSKIK 520 (637)
Q Consensus 498 ~l~~~~~~~g~~~--eA~~~~~~~~ 520 (637)
.++..+...+.+. ++..++.++.
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~ 195 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVK 195 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6777777766543 3334555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00027 Score=59.39 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHP-------NV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEH----- 452 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 452 (637)
.+......+.+.|++++|+..|++.++.. +. +. ..|..+..++...|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44555666777777777777777777642 11 23 38888888888999999999988888874
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 006632 453 GVSPNL-KTF----ETLMWGYSEARQPWRAEEILQIMKA-----FGVHPQKSTF 496 (637)
Q Consensus 453 ~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 496 (637)
.+.|+. ..| .....++...|++++|+..|++..+ .|+.+.....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 114654 467 8888899999999999999988753 4555544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=63.26 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006632 356 YSTIMNAWSTAGFMDKCKEIFDDMGKA--------G---------IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
+......+.+.|++++|+..|...+.. . .+.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444445555555555555555554432 0 01234678888899999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006632 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL 458 (637)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (637)
+.+...|..+..+|...|++++|+..|++..+.. |+.
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~ 130 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAA 130 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGG
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCC
Confidence 6678899999999999999999999999998853 543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=63.68 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006632 86 GKPQEAQAIFNNLIEGG--HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 163 (637)
|++++|+..|++.++.+ .+.+..++..+..++...|++++|...|+++++.. +.+...+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444321 01123334444444444444444444444444432 2333344444444444444444444
Q ss_pred HHHHHH
Q 006632 164 TFWKMK 169 (637)
Q Consensus 164 ~~~~m~ 169 (637)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-05 Score=79.28 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006632 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
...+..+..+|.+.|++++|+..+++..+..+. +..+|..+..+|...|++++|++.|++..+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333334444444444444444444444333221 333344444444444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00016 Score=71.79 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 255 (637)
+..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34566666667777777777777777766643 3456667777777777777777777777766553 22455666666
Q ss_pred HHHHHcCCHHHHHH
Q 006632 256 TAYAQNGEADQAEE 269 (637)
Q Consensus 256 ~~~~~~g~~~~A~~ 269 (637)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=75.31 Aligned_cols=95 Identities=15% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEA- 502 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~- 502 (637)
.|..+..+|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 677788888888888888888888887542 2567788888888888888888888888755 445433 33333333
Q ss_pred HHHcCCHHHHHHHHHHHhhh
Q 006632 503 RRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~~ 522 (637)
....+..+++..++.+|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 22334445555555555433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.5e-05 Score=63.95 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=50.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM----------DRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.+++|++.+++..+.. +.+...|..+..++...|++ ++|+..|++.++.... +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445566666666655553 44555666555555555443 4666666666664322 3446666666666
Q ss_pred hcC-----------ChhHHHHHHHHHHHCCCCCCHH
Q 006632 470 EAR-----------QPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 470 ~~g-----------~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
..| ++++|++.|++..+ +.|+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 543 55566666665555 445543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00089 Score=55.59 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006632 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAI 443 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 443 (637)
++++|+..|++..+.| .++.. |...|...+..++|.++|++..+.| +...+..|...|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555544 22222 4444445555555555555555532 44555555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006632 444 EVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 488 (637)
..|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34444455555554 455555555555554433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=62.29 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...|..+...+...|++++|+..|++..+... .+...+..+..++...|++++|+..+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555555555555555555554321 1344555555555555555555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0014 Score=68.88 Aligned_cols=137 Identities=7% Similarity=0.021 Sum_probs=88.0
Q ss_pred HcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 84 ERGK-PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR----------FNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 84 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
+.|. .++|++.+++++..+ +-+..+|+.--.++...++ +++++..++.+++.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 456788888887742 2356677776666666555 677777777777655 55666676666666
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006632 153 SESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG-KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 153 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
.+.+ ++++++..++++.+.++. +..+|+.-.-++.+.| .++++++.++++.+.. +.|..+|+.....+.+
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHh
Confidence 6666 557777777777766544 6666666666666666 6667777776666653 4566666666555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.8e-05 Score=73.10 Aligned_cols=150 Identities=8% Similarity=-0.024 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
....+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 4555667777777888888888888887763 343321 111222222222111 125667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA-WCNEKNI 229 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~ 229 (637)
+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence 777888888888888877776432 66777778888888888888888888776643 3345555555554 3345566
Q ss_pred HHHHHHHHHHHHC
Q 006632 230 TEAWNVMHKMAAS 242 (637)
Q Consensus 230 ~~A~~~~~~~~~~ 242 (637)
+++..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.5e-05 Score=60.02 Aligned_cols=93 Identities=10% Similarity=-0.033 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN-------LK 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 459 (637)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|+++.+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45667788888889999999999999888764 5678888888999999999999999999988753 44 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 006632 460 TFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.+..+..++...|+.++|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 56666666766676666655443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0015 Score=54.28 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cC
Q 006632 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN----EK 227 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g 227 (637)
+.+++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+.+ +...+..|...|.. .+
T Consensus 39 ~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 39 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCc
Confidence 33444444444444432 33334444444433 344444444444443332 33334444444443 34
Q ss_pred CHHHHHHHHHHHHHC
Q 006632 228 NITEAWNVMHKMAAS 242 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~ 242 (637)
++++|..+|++..+.
T Consensus 112 d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 112 NEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00037 Score=71.36 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=91.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHH
Q 006632 397 GYVREQEPEKAEELLMTMIES---GF---HP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGV-SPNL-KTFE 462 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~---~~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~ 462 (637)
.+..+|++++|+.++++..+. -+ .| ...+++.|...|...|++++|+.++++.++ .|. .|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888877642 11 12 235788888899999999999999988764 231 2332 3688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH---CCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 463 TLMWGYSEARQPWRAEEILQIMKA---FGVHPQK----STFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
.|...|...|++++|..++++..+ .-+.|+. .....+..++...|.+++|+.++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988742 1123442 245566677788899999999999986553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0003 Score=56.22 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++..|+...+.. +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554432 2345555556666666666666666666655543 34455555566666666666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=60.66 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=71.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE----------PEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
.+.+.+++|++.++...+.. +.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34556677777777766654 3466677767766666655 458888888888874 55778888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 434 CSDG-----------SMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 434 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...| ++++|+..|+++++ +.|+...|..-+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8764 89999999999998 45776666555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.001 Score=50.11 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555555442 334455555555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0004 Score=55.48 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 168 (637)
...+..+..++...|++++|...|++.++.. +.+...+..+...|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444443332 223333333444444444444444444333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00038 Score=71.27 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=90.6
Q ss_pred HHHHcCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 006632 362 AWSTAGFMDKCKEIFDDMGKA---GIKP----DAHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVIFT 427 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 427 (637)
.+...|++++|+.++++.++. -+.+ ...+++.|+..|...|++++|+.++++..+. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355788999999888876642 1122 2567888999999999999999999887641 2 1222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 428 TIISGWCSDGSMDRAIEVFDKMCE-----HGVS-PNL-KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|...|...|++++|+.+++++.+ .|.. |+. .+...+..++...|++++|..+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998864 3422 222 2455666677788889999999888864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0016 Score=49.02 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4445555556666666666666666655432 2244555555555555555555555555555543 3344444444444
Q ss_pred H
Q 006632 152 F 152 (637)
Q Consensus 152 ~ 152 (637)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00081 Score=52.14 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666665543 34455666666666666666666666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=50.88 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006632 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
...+..+...|...|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444444444433221 2333444444444444444444444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.014 Score=56.21 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006632 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.|++... +.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 4455556555555555566666666666666543 5555555556666666666666666666554 44555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.055 Score=52.17 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cC--C---HHHHHHHHHHHH
Q 006632 103 HKPSLVTYTTLLAALT--IQK---RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE---SG--N---MEEAMDTFWKMK 169 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g--~---~~~A~~~~~~m~ 169 (637)
.+.+..+|...+++.. ..+ +..+|..+|+++++.. |-....+..+..+|.. .+ . .......++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3557777777775543 333 3478999999999874 4445555555444431 11 1 111122222221
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006632 170 ES-GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 170 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
.. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 124578888888887888899999999999999875 78888888889999999999999999999886 5676
Q ss_pred HHHH
Q 006632 249 VTYN 252 (637)
Q Consensus 249 ~~~~ 252 (637)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0077 Score=46.10 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...|++++|+..|+++.+... .+.. .+..+..++...|++++|+..|++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555321 1334 555555555555666666655555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.019 Score=57.68 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=54.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHH
Q 006632 396 KGYVREQEPEKAEELLMTMIESG---FHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HG-VSPNL-KTF 461 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~ 461 (637)
..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.+++++++ .| -.|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456677777777777766421 1111 34566677777777777777777776653 12 11222 256
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006632 462 ETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.|...|...|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 667777777777777777776653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0096 Score=59.81 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 006632 401 EQEPEKAEELLMTMIES---GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGV-SPNL-KTFETLMW 466 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~ 466 (637)
.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++++ .|. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666555431 01111 23455556666666666666666655542 121 1222 23555555
Q ss_pred HHHhcCChhHHHHHHHHH
Q 006632 467 GYSEARQPWRAEEILQIM 484 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m 484 (637)
.|...|++++|..++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 555555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.029 Score=42.77 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
....+.+.|++++|...|+++.+.. +.+.. .|..+..+|...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777776653 44556 77777777777777777777777777643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.017 Score=58.11 Aligned_cols=87 Identities=10% Similarity=-0.029 Sum_probs=66.4
Q ss_pred HcCChhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 006632 365 TAGFMDKCKEIFDDMGK---AGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIE-----SG-FHPN-VVIFTTII 430 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~~li 430 (637)
..|++++|+.++++.++ .-+.|+ ..+++.|...|...|++++|+.++++..+ .| ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788888888887654 212222 56788899999999999999999988764 22 1233 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006632 431 SGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..|...|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.17 Score=55.78 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=24.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006632 188 GIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455666555553322 34455666666666666666666665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.27 Score=54.17 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=87.1
Q ss_pred HHHHHHcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 79 MNSLIERGKPQEAQA-IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
.......+++++|.+ ++..+ ++......++..+...|.++.|+.+.+ +.. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 445567889999876 44221 212334777788888899998887643 221 11345678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 99999987554 3778999999999999999999999998743 3445555555666665444433
Q ss_pred HHH
Q 006632 238 KMA 240 (637)
Q Consensus 238 ~~~ 240 (637)
...
T Consensus 732 ~a~ 734 (814)
T 3mkq_A 732 DAE 734 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.036 Score=41.91 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQE---PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++..+..+..++...++ .++|..++++..+.. +.++..+..+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444433322 345555555554443 34444444455555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.043 Score=55.15 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=71.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKA---GIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVI 425 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 425 (637)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|+..|...|++++|+.+++++.+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44556788999999999988753 12222 567888999999999999999999987642 2 1222 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++.|...|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998864
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.034 Score=45.95 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 006632 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR---QPWRAEEILQIMKAFGVHP--QKSTFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~eA~~ 514 (637)
..+.+-|.+..+.|. ++..+...+..++.+++ +.++|+.+++...+.. .| ..+.+-.+.-++.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444554444443 45555555555666655 3445666665554422 13 12333344445566666666666
Q ss_pred HHHHHhhhhc
Q 006632 515 ILSKIKNKER 524 (637)
Q Consensus 515 ~~~~~~~~~~ 524 (637)
+++++.+..|
T Consensus 93 y~~~lL~ieP 102 (152)
T 1pc2_A 93 YVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCC
Confidence 6666665555
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.037 Score=41.79 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+.|+..+..+..++...++ .++|..++++.++.... +......+...+...|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777777777765554 68888888888875432 556777778888888888888888888876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.88 Score=42.05 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 006632 229 ITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQN-----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE-GKI 299 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 299 (637)
...|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++.++.+...+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 454 55788888888884 88888888888888865433467777788888774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 006632 300 KEALRFARTMKEYGVH--PNLVIFNL 323 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~--~~~~~~~~ 323 (637)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888877544 54443333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.11 Score=42.82 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 387 DAHAYSILAKGYVREQ---EPEKAEELLMTMIESGFHP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|.+.++.+++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334444444444432 12 123333334444444444444444444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.92 Score=38.45 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006632 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 159 (637)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..|.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3345566666666665544 2455666666666666666666666654321 333344444555554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006632 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.-.++-+.....| -++.....+.-.|++++++++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443333333322 133334444455555555555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.22 Score=38.41 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESG------FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..-+..|+..+.+.++++.|...|+...+.. -.+...++..+..+|.+.|+++.|+.+++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444455566666666666666666554420 022344555666666666666666666666655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=1.3 Score=37.60 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=46.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006632 118 TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197 (637)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (637)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554432 2445555555555555555555555555432 233333444455554444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++-+.....| -++.....+.-.|+++++.++|.
T Consensus 81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 4333333322 13333444445555555555553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.26 Score=37.95 Aligned_cols=70 Identities=4% Similarity=-0.030 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006632 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG------VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+..-...|+..+...|++..|...|+++.+.- -.+....+..|..++.+.|++++|+.+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34445566777777777777777777766421 112345666677777777777777777777665 44553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.37 Score=44.55 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 006632 369 MDKCKEIFDDMGKAGIKPD---AHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD-GSM 439 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 439 (637)
...|...+++.++. .|+ ...|..|...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666776664 344 4577778877877 488888888888888764112367777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHH
Q 006632 440 DRAIEVFDKMCEHGVS--PNLK 459 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~--p~~~ 459 (637)
++|.+.+++.+..... |+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHcCCCCCCCChh
Confidence 8888888888876555 5533
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=1.3 Score=35.21 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006632 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 375 (637)
.|.+++..++..+.... .+..-+|-++--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 56667777777666652 34444454544444444434444444433221 111 123333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006632 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
+-.+ ..+......-++.+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|++
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3222 123444555566677777777777777775443 2667777777777777777777777777777777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.55 Score=38.30 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=32.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006632 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
.++++.|.++|+.+++.+ +.-..+|......-.++|++..|.+++.+.+..+
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 366777777777665432 2226666666666666777777777777766654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.22 Score=39.55 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 006632 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR---AEEILQIMKAFGVHP--QKSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
.+.+-|.+....|. |+..+-..+..++.++....+ ++.+++...+.+ .| ..+..-.+.-++.+.|++++|.++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433332 455555555555555554444 555555554321 12 112222344455566666666666
Q ss_pred HHHHhhhhcc
Q 006632 516 LSKIKNKERT 525 (637)
Q Consensus 516 ~~~~~~~~~~ 525 (637)
++.+....|+
T Consensus 97 ~~~lL~~eP~ 106 (126)
T 1nzn_A 97 VRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 6666655553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=2 Score=34.29 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006632 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
...+...+......|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555555554321 244555555555555555555555555555555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.34 Score=38.45 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR---AIEVFDKMCEHGVSP--NLKTFETLMWGY 468 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~ 468 (637)
+++.......+..+.+-|.+....| .++..+--.+.+++.+..+... ++.++++....+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 3444445556667777777776655 5888888889999999887666 999999988754 23 334556677799
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.+.|++++|.++++.+.+ ++|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCC
Confidence 999999999999999988 77864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.6 Score=38.06 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=38.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006632 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
..++.++|.++|+.+.+.+ +.=...|.....--.++|++..|.+++.+.+..+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3467778888888776542 2226666666666677888888888888887766553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.38 E-value=11 Score=41.24 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006632 79 MNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~ 99 (637)
++.+.+.++.+.+.++|..+.
T Consensus 237 ~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 237 NKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.24 E-value=9.6e-06 Score=79.32 Aligned_cols=239 Identities=13% Similarity=0.166 Sum_probs=155.2
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006632 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+..+..|..|..++...|+..+|++.|-+. .|+..|..++.++.+.|.++.....+....+. ..++.+=+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 34567778999999999999999988766432 25667889999999999999988887766554 34556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006632 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.|+-+|++.+++.+-.+++ . .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.
T Consensus 121 eLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L 183 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHL 183 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSC
T ss_pred HHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHH
Confidence 8999999999876533322 2 25666677788888888999888888766543 33444555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006632 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++..|.+.-++ ..++.||-.+-.+|...+.+..|.-.--.++-. ..-...++..|-..|.+++-+.++
T Consensus 184 ~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 184 GEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666665543222 225667777777777777776665544443321 112233555666777777777776
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006632 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
+.-.... +.....|+-|.-.|++ -+++...+.++.
T Consensus 253 EaglglE-rAHmGmFTELaILYsK-Y~PeKlmEHlkl 287 (624)
T 3lvg_A 253 EAALGLE-RAHMGMFTELAILYSK-FKPQKMREHLEL 287 (624)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHS-SCTTHHHHHHTT
T ss_pred HHHhCCC-chhHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 6655321 3445566666555554 344444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.25 E-value=13 Score=37.17 Aligned_cols=164 Identities=4% Similarity=0.001 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--H
Q 006632 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-D----AHAYSILAKGYVREQEPEKAEELLMTMIE----SGFHPN--V 423 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~ 423 (637)
....|...|...|++.+|..++..+...-... + ...+...++.|...+++..|..+++++.. ...+|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34567788888999999999999876421111 1 35666778888999999999999888642 221222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPNLKTFE----TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (637)
..+..++..+...+++.+|.+.|.++.+. ...-|...+. .++....-++...+--.+..........++.+.|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 35667777888899999999888887642 1112332222 222222223333333333333322222346678888
Q ss_pred HHHHHHHc--CCHHHHHHHHHH
Q 006632 499 LAEARRAT--GLTKEAKRILSK 518 (637)
Q Consensus 499 l~~~~~~~--g~~~eA~~~~~~ 518 (637)
++.++... .+++...+.+..
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHHhchHhhhHHHHHHHHH
Confidence 88888654 345555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.02 E-value=0.015 Score=57.33 Aligned_cols=218 Identities=10% Similarity=0.085 Sum_probs=134.2
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
..|+..|..++....+.|.+++-+..+.-..+.. .++..=+.|+-+|++.+++.+..+.+. .||..-...+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 3456667778999999999999888777655532 344444688999999988766544332 4666666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESG--------------------LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+-|...|.++.|.-+|..+.... -.-++.||--+-.+|...+++.-|.-.--.+.-.
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-- 228 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-- 228 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--
Confidence 788888888888877775543210 0125567777777777777776665444333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCC------C
Q 006632 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH-NGVQ------P 281 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~ 281 (637)
+| -...++..|-..|.+++-+.+++.-... -+.-...|+-|.-.|++- ++++..+.++..-. .+++ .
T Consensus 229 --ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 --AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp --SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred --HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11 1233555666777777777777776532 133456677777777664 34444333322111 1111 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 006632 282 NGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~ 303 (637)
....|..++-.|.+..+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 3455777777777777777664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=1.8 Score=42.53 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTFLLL 499 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 499 (637)
+...++..+...|+..+|+..++.+..... -+...+..++.++...|+..+|++.|+... +.|+.|..++-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 344566777888999999988888876532 377788889999999999999998888764 47899987754444
Q ss_pred HHH
Q 006632 500 AEA 502 (637)
Q Consensus 500 ~~~ 502 (637)
-.+
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=1.6 Score=42.92 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 006632 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKTF 461 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 461 (637)
+...++..+...|++++|...+..+.... +-+...|..++.++...|+..+|++.|++.. +.|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556778889999999999999888764 6788899999999999999999999998875 35899987653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.56 E-value=1.5 Score=46.87 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=38.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
..+...|+++-|+.+-++....-+. +-.+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455667777787777777765322 56678888888888888888877777664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.07 E-value=5.5 Score=31.68 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 453 GVSPNLKTFETLMWGYSEARQP---WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
+-.|+..+--.+..++.++... .+++.+++.+.+.+..-..+.+-.+.-++.+.|++++|.++.+.+....|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4456777777777788887755 357778877765331112444555666788888888888888888877664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.86 E-value=36 Score=37.36 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=133.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
Q 006632 258 YAQNGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV-------HPNLVIFNLLIKGF 328 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 328 (637)
....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566777766665544311 111122333344455566666678877777654321 01111222232233
Q ss_pred HHcCC-HhhHHHHHHHHhhCCCCCCHHH--HH--HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHc
Q 006632 329 VEIMD-RDGVDEVLALMKEFRVNPDVIT--YS--TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK--GYVRE 401 (637)
Q Consensus 329 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 401 (637)
+-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++. ++.-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33332 245566666655432 2221 12 23333456677777788888776642 3333333433 44467
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006632 402 QEPEKAEELLMTMIESGFHPNVVIF--TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
|+.+.+..+.+.+.... .|....- .++..+|+..|+.....+++..+.+.. ..+......+.-++...|..+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888887642 2222221 234456778888777777888887641 2223333333445555777776777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 006632 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLT-KEAKRILSKIK 520 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~ 520 (637)
+++.+.+.+ .|....-..+.-....+|.. .+|...+..+.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 776555433 33333222333333334443 67888888875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.70 E-value=2.4 Score=45.39 Aligned_cols=49 Identities=10% Similarity=-0.158 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006632 457 NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATG 507 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 507 (637)
+..-|..|+....+.+.++||.+.|+.... .+-+...+..|+..|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 444566666666666777777777766654 3345566666666666555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.85 E-value=3.9 Score=30.63 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+.-+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445666667777778889999999999999999999999999999887653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.84 E-value=8.1 Score=30.74 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006632 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.|+..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ ++|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4555555555555555543 335666666666543211233445555566677777777777666665 55553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.70 E-value=4.9 Score=33.47 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSL-------VTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
.+-.-+..+...|.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334455666666666666665554331 112331 133444455556666666666666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.22 E-value=15 Score=29.64 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 455 SPNLKTFETLMWGYSEARQP---WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|+..+--.+..++.++... .+++.+++.+.+.+..-..+..-.+.-++.+.|++++|+++.+.+....|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45666666666667766644 356666666654221112233334555677777777777777777776664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.69 E-value=27 Score=39.81 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=100.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C---------------
Q 006632 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----G--------------- 418 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--------------- 418 (637)
.++..+...+..+.+..+.... +.+....-.++.+|..+|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4556667777777776654432 234555556778888999999999999764210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006632 419 ---FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--K--TFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491 (637)
Q Consensus 419 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 491 (637)
...-..-|..++..+.++|.++.++++-+.+++....-+. . .|..+.+.+...|++++|...+-.+.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0112235677788888899999999888877754222122 2 477888899999999999998887766333
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 006632 492 QKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA 512 (637)
.......++..++..|.+++=
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 355677788777877776553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.55 E-value=38 Score=33.76 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-
Q 006632 389 HAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL- 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~- 458 (637)
.....|...|...|++.+|.+++.++...-. ..+ ...+...+..|...+++..|..+++++.. ....|+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3456788999999999999999999864311 112 34566778889999999999999998742 2222222
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 459 -KTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 459 -~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
..+...+..+.+.+++.+|...|.++.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 346677888889999999998887764
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.11 E-value=27 Score=31.72 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=78.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006632 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK----TFETLMWGYSEAR 472 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 472 (637)
...+.|++++|+.....-++.. |-|...-..++..+|-.|+++.|.+-++...+. .|+.. +|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4567899999999998888875 778888888999999999999999999988874 34433 34444432
Q ss_pred ChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhhhhc
Q 006632 473 QPWRAEEILQIMKAFGV-----HPQKSTFLLLAEAR--RATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~-----~p~~~~~~~l~~~~--~~~g~~~eA~~~~~~~~~~~~ 524 (637)
...-.....-+- .........++.++ ...|+.++|.++-.++.+..+
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 111122212111 12344555666665 456999999999888865543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.92 E-value=29 Score=39.58 Aligned_cols=150 Identities=11% Similarity=0.117 Sum_probs=91.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 006632 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES-------------------- 171 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------------- 171 (637)
.++..+...+..+.+..+... .+.+....-.+..+|..+|++++|...|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344445555555555544332 1333333334455566666666666666543210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006632 172 G--LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK-PN--LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 172 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 246 (637)
. ...-..-|..++..+-+.+.++.++++-....+..... ++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0 01112346778888889999998888877666543111 11 12578888999999999999999988877643
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 006632 247 DVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~ 268 (637)
-......|+...+..|..+.-.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhh
Confidence 3456667777777777765544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.67 E-value=7.8 Score=32.23 Aligned_cols=108 Identities=8% Similarity=0.120 Sum_probs=73.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------
Q 006632 112 TLLAALTIQKRFNSIHSIMSQVEENG-MDPD-------SIFFNAVINAFSESGNMEEAMDTFWKMKES------------ 171 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------------ 171 (637)
.-+..+...+.++.|.-+.+.+.... ..|+ ..++..+.+++...+++..|...|++..+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33566677788888887777754431 1333 135677788889999999999999884211
Q ss_pred ------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 172 ------------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 172 ------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
....+...-.-+..+|.+.+++++|+.+++.++... .+...-..|.+.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~---Rt~kvnm~LakL 164 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ---RTPKINMLLANL 164 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG---CCHHHHHHHHHH
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh---cCHHHHHHHHHH
Confidence 122234555668889999999999999999987654 455544444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.11 E-value=39 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 284 RTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
.....|...|.+.|+.++...++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667788888888888877776664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.99 E-value=7.9 Score=28.98 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=36.6
Q ss_pred HhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
.-++.+.++.+......|++.+..+.+.+|.+.+++..|..+++-+..+- .+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 34455556666666666777777777777777777777777777665431 22233454444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.38 E-value=8.7 Score=30.49 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+..+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++-++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 344555666666678899999999999999999999999999999987663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 637 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.97 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.73 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.59 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.18 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.84 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.56 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 81.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-21 Score=196.18 Aligned_cols=383 Identities=11% Similarity=0.033 Sum_probs=218.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
+...+.+.|++++|++.|+++.+.. +-++.++..+..++...|++++|...++++++.. |.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4555666666666666666666532 2245566666666666666666666666666553 4445556666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006632 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|+..+....+.... +...+..........+....+........... .................+....+...+.
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHHHHH
Confidence 66666666665554322 33333334444444444444444443333322 2233333333444444444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006632 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
...... + .+...+..+...+...|++++|...+.+..... +.+
T Consensus 160 ~~~~~~-~-----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~ 202 (388)
T d1w3ba_ 160 KAIETQ-P-----------------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp HHHHHC-T-----------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HhhccC-c-----------------------------------chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-ccc
Confidence 443321 1 223344444455555555555555555544432 233
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
...+..+...+...|++++|...+....... +.+...+..+...+.+.|++++|+..|++..+.. +.+..++..+...
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455555555555555666655555555443 2345555666666666777777777777666653 3356667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
|...|++++|.+.++...... +.+...+..+...+...|++++|+..|++.++.... +..++..+..++...|++++|
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766653 556667777777777777777777777777664321 455677777777777777777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 006632 478 EEILQIMKAFGVHPQ-KSTFLLLAEARRATGL 508 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 508 (637)
+..|++..+ +.|+ ...|..++.+|.+.|+
T Consensus 359 ~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 359 LMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 777777765 4554 4466677777766653
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.6e-21 Score=195.45 Aligned_cols=359 Identities=11% Similarity=-0.005 Sum_probs=251.3
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
.+.++..+..+...|.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...+....+.. +.+......
T Consensus 29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 106 (388)
T d1w3ba_ 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccc
Confidence 34567889999999999999999999999998853 3478899999999999999999999999998876 556666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006632 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
........+....+............ ................+....+...+....... +.+...+..+...+...|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 183 (388)
T d1w3ba_ 107 LAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTT
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhccC--cchhHHHHhhcccccccC
Confidence 66666677776666666666555433 355566667777788899999999998888764 556888899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006632 228 NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
++++|...+++..+.. +-+...|..+...+...|++++|...+.+...... .+...+..+...+.+.|++++|+..|+
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 261 (388)
T d1w3ba_ 184 EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988753 33567788888888888999999888888776543 456667777788888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006632 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+..+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|+..|++.++.. +.+
T Consensus 262 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~ 338 (388)
T d1w3ba_ 262 RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEF 338 (388)
T ss_dssp HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 777653 3345556666666666666666666665554433 2344455555555555555555555555554432 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
..++..+...|.+.|++++|...|++.++.. |.+..+|..++.+|.+.|
T Consensus 339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 4444555555555555555555555554432 223444555554444444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.6e-13 Score=128.96 Aligned_cols=231 Identities=10% Similarity=-0.008 Sum_probs=173.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
.....+.+.|++++|+..|+++++.. +.++.+|..+..++...|+++.|...+.++++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 35677889999999999999999863 3478899999999999999999999999999875 667889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 157 NMEEAMDTFWKMKESGLTPT--------------TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
++++|.+.++......+... .......+..+...+...+|.+.|.+.........+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999999887532200 0001112223344556677777777776654333456777777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006632 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEA 302 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 302 (637)
+...|++++|+..|++..... +-+...|..+..+|...|++++|.+.|++..+... .+..++..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888877653 23566777788888888888888888887776532 3466777788888888888888
Q ss_pred HHHHHHHHH
Q 006632 303 LRFARTMKE 311 (637)
Q Consensus 303 ~~~~~~~~~ 311 (637)
+..|++.++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.9e-13 Score=128.82 Aligned_cols=245 Identities=11% Similarity=0.045 Sum_probs=175.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006632 217 NVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE 296 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 296 (637)
-.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...|.+..+..+ .+...+..++..|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 345667788899999999999888764 33577888888888889999999988888877543 3567788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006632 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 297 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 376 (637)
|++++|.+.+++..... |+............. ..+.......+..+...+...++...+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 88988888888887653 221110000000000 000001111122234445667788888
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006632 377 DDMGKAGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 377 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
....+... ..+..++..+...+...|++++|+..|++..... +.+..+|..+...|...|++++|++.|+++++...
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP- 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-
Confidence 77765432 2457788888889999999999999999988764 56788899999999999999999999999887542
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 456 PNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
-+...+..++.+|...|++++|+..|++..+
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2566888899999999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.2e-09 Score=102.31 Aligned_cols=218 Identities=6% Similarity=-0.003 Sum_probs=175.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
-...++.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|+..++++++.. +-+..+|..+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 35567777788889999999999999999853 347788999998888876 5899999999998876 67789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 006632 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN- 228 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~- 228 (637)
..+.+.|++++|+..|+++.+..+. +..+|..+...+...|++++|+..|+++.+.. +.+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHcccc
Confidence 9999999999999999999998655 78999999999999999999999999999975 5678899988887776665
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHh
Q 006632 229 -----ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-NGRTCGIIISGYCK 295 (637)
Q Consensus 229 -----~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 295 (637)
+++|+..+.+.++.. +.+...|+.+...+.. ...+++...++...+....+ +...+..++..|..
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678999998888764 3467778777666544 44677788887776543322 34455556666644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.9e-08 Score=97.38 Aligned_cols=162 Identities=12% Similarity=0.043 Sum_probs=83.8
Q ss_pred HHHHHHHcCCHhhHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCC----CHHHHHH
Q 006632 324 LIKGFVEIMDRDGVDEVLALMKEFR----VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKP----DAHAYSI 393 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~ 393 (637)
+...+...|+++.+...+....... .......+......+...+....+...+...... .... ....+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 3344444455555444444433211 1112233334444455555555555555543321 0011 1223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHH
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFH---PNVVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-KTFETLM 465 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~ 465 (637)
+...+...|++++|...+.+..+.... .....+..+...+...|++++|...++++.. .+..|+. .++..+.
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 555666677777777776665543211 1233455566667777777777777776652 2333332 3566667
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 006632 466 WGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~ 485 (637)
.++...|++++|.+.+++..
T Consensus 299 ~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=7.8e-09 Score=98.38 Aligned_cols=197 Identities=8% Similarity=0.021 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
..+++.+...+.+.+.+++|+.+++++++.. |.+...|+....++...| ++++|+..+++..+..+. +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 4567777777788888889999998888876 667778888888887766 488888888888877654 6788888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--
Q 006632 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE-- 263 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-- 263 (637)
.+.+.|++++|+..++++.+.. |.+..+|..+...+...|++++|+..++++++.+ +.+...|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 8888888888888888888764 5678888888888888888888888888887764 3356677766666555444
Q ss_pred ----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 264 ----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 264 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+++|+..+.+.++..+ .+...|+.+...+... ..+++.+.+....
T Consensus 198 ~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLL 246 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 3455555555544432 2344444444333222 2344444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.4e-08 Score=98.42 Aligned_cols=267 Identities=10% Similarity=0.018 Sum_probs=169.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHH
Q 006632 256 TAYAQNGEADQAEEVIVEMEHNGVQPN----GRTCGIIISGYCKEGKIKEALRFARTMKEYGV-HP----NLVIFNLLIK 326 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll~ 326 (637)
..+...|++++|+.++++..+.....+ ..++..+...|...|++++|+..|++...... .+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334455555555555555444321111 12344445555555555555555555432110 01 1123344455
Q ss_pred HHHHcCCHhhHHHHHHHHhh----CCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 006632 327 GFVEIMDRDGVDEVLALMKE----FRVNP---DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG----IKPDAHAYSILA 395 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 395 (637)
.+...|++..+...+..... ..... ....+..+...+...|+++.+...+....... .......+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 55666666666666555432 11111 12345567778899999999999998877532 222345666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 006632 396 KGYVREQEPEKAEELLMTMIES--GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLMW 466 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 466 (637)
..+...+....+...+.+.... ..... ...+..+...+...|++++|...+++..+.....+ ...+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7888999999999988876542 11111 23456667778899999999999998875432222 345667888
Q ss_pred HHHhcCChhHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 467 GYSEARQPWRAEEILQIMK----AFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++...|++++|...++++. ..+..|+. ..+..+..++.+.|++++|.+.++++...
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998875 34555553 47788899999999999999999988654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.2e-08 Score=97.01 Aligned_cols=185 Identities=10% Similarity=-0.019 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006632 264 ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
.++|..+|++.++...+.+...|...+..+.+.|++++|..+|+++++........+|...+..+.+.++.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555443333334444555555555555555555555554432111223444445545455555555555555
Q ss_pred HhhCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 006632 344 MKEFRVNPDVITYSTIMN-AWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG-FHP 421 (637)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 421 (637)
+.+..+. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|+.+|++..+.. .+|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4443322 2222222211 122234455555555554443 12334445555555555555555555555544431 111
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006632 422 --NVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 422 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
....|...+.--..+|+.+.+..+++++.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344444444444455555555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=2.7e-08 Score=94.44 Aligned_cols=190 Identities=8% Similarity=0.014 Sum_probs=150.7
Q ss_pred CHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006632 333 DRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412 (637)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (637)
..+++..+++...+...+.+...|...+..+...|+++.|..+|+.+++........+|..++..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34678888888877555567778888888889999999999999999876433345678999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC
Q 006632 413 TMIESGFHPNVVIFTTIISG-WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAF-GVH 490 (637)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~ 490 (637)
++.+.. +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|..++..+...|+.++|+.+|++..+. +..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998875 4455555554443 445689999999999999763 336778999999999999999999999998763 344
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 491 PQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 491 p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
|+ ...|...+..-...|+.+.+..+.+++.+..+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 43 45788888887888999999999999877655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=1.1e-09 Score=105.73 Aligned_cols=247 Identities=6% Similarity=-0.061 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006632 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRAW----------CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
.++|++++++..... |.+...|+..-..+ ...|++++|+..++...+.. +.+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 355666666555543 22333443322221 22333555666666655542 224455555555544443
Q ss_pred --CHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 006632 263 --EADQAEEVIVEMEHNGVQPNGRTCG-IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDE 339 (637)
Q Consensus 263 --~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (637)
++++|...+.++..... ++...+. .....+...+.+++|+..++.++... +.+...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 35566666666655432 2333332 23344555566666666666665543 3455566666666666666655543
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006632 340 VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF 419 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 419 (637)
.+....... |+ ...+...+...+..+++...+....... +++...+..++..+...++.++|...+.+..+..
T Consensus 200 ~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 200 QGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp CCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 333222210 00 1112222344455555666665555443 2334444555555666666666666666665442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+.+..+|..++.++...|+.++|++.|+++.+
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445556666666666666777777766666
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=9.2e-10 Score=106.36 Aligned_cols=233 Identities=6% Similarity=-0.075 Sum_probs=143.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHH
Q 006632 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK--NITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~ 266 (637)
.|++++|+.+++...+.. |.+...|..+..++...+ ++++|+..+.++.+.. +++...+. .....+...+.++.
T Consensus 86 ~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 344566666777666653 445666666666655544 3667777777766553 22344433 33355556677777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhh
Q 006632 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
|+..++.+....+ .+...|+.+...+.+.|++++|...+...... .|+ .......+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7777776666543 35666777777777777766665544433321 011 11222334455666777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006632 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
..+ ++...+..+...+...++.++|...+.+..+.. +.+..++..++..|...|++++|.+.++++.+.. |.+...|
T Consensus 237 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~ 313 (334)
T d1dcea1 237 GRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYL 313 (334)
T ss_dssp SCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHH
T ss_pred hCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHH
Confidence 542 344455566667777888888888888877653 2356677778888888999999999999988863 3345566
Q ss_pred HHHHHHHH
Q 006632 427 TTIISGWC 434 (637)
Q Consensus 427 ~~li~~~~ 434 (637)
..+...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=4.6e-09 Score=97.08 Aligned_cols=217 Identities=11% Similarity=-0.040 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006632 88 PQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 164 (637)
.+.|+.-++++....... ...+|..+..+|.+.|++++|...|++.++.. |.++.+|+.+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 345555566665432111 23466677788888888888888888888775 66778888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006632 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM 244 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 244 (637)
|++..+..+. +..++..+..+|...|++++|...|+...+.. +.+......+...+.+.+..+.+..+........
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 8888876543 56678888888888888888888888887764 4455555555555556665555555555555432
Q ss_pred CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 245 KPDVVTYNTIATAYAQNGE----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++...++ ++..+..... .+.+...+....... +....++..+...|...|++++|+..|++.+..
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1222222 2222211111 111111111111100 011234555667777777777777777777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=8.5e-09 Score=95.25 Aligned_cols=199 Identities=12% Similarity=-0.018 Sum_probs=144.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
....|..+...|.+.|++++|+..|++.++.. +-++.+|+.+..++...|++++|+..|+++++.. +.+..++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 45677788899999999999999999999853 3478899999999999999999999999999976 566788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--
Q 006632 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN-- 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-- 228 (637)
+|...|++++|...|++..+..+. +......+...+.+.+..+.+..+........ ++...++ ++..+.....
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD---KEQWGWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC---CCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc---hhhhhhh-HHHHHHHHHHHH
Confidence 999999999999999999887543 55555555556666676666666666665533 2222222 2222222222
Q ss_pred --HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006632 229 --ITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 229 --~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
.+.+...+...... .| ...+|..+...|...|++++|...|++.+...
T Consensus 189 ~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 189 TLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222221111 11 23467778999999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=4.7e-07 Score=78.58 Aligned_cols=125 Identities=11% Similarity=-0.061 Sum_probs=76.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006632 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
...+...|+++.|++.|.++. +|+..+|..++.+|...|++++|++.|++.++.+.. +...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 334455666666666665432 455566666666666666666666666666654322 444566666666666666
Q ss_pred hHHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 475 WRAEEILQIMKAFG------------V--HPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 475 ~~A~~~~~~m~~~g------------~--~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
++|+..|++..... . .++ .+++..+..++...|++++|.+.++++....+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66666666654311 0 111 24566777888889999999988888876544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.3e-06 Score=75.63 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=99.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006632 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
...+...|+++.|++.|..+ .+|+..+|..+...|.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 44557888999998888764 25677888889999999999999999999988875 66788899999999999999
Q ss_pred HHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006632 440 DRAIEVFDKMCEHGV--------------SPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
++|++.|++.+.... .++ ..++..+..++...|++++|.+.++...+....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999998875311 111 246667888899999999999999988774333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00028 Score=64.04 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 006632 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEH 276 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 276 (637)
.+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+.....
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 34444444444555555555555554443 33333334444433 3344444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.9e-06 Score=67.72 Aligned_cols=96 Identities=10% Similarity=-0.012 Sum_probs=62.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ 473 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 473 (637)
-...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|+..++++++.+. .+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence 3455666677777777777766653 55666667777777777777777777777766543 255566666667777777
Q ss_pred hhHHHHHHHHHHHCCCCCCH
Q 006632 474 PWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~ 493 (637)
+++|+..|++..+ ..|+.
T Consensus 87 ~~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 87 FEEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp HHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 7777777766665 44443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=0.00039 Score=63.09 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFARTMKEYGVHPNLVIFN 322 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (637)
|+..+..|...+...+++++|++.|++..+.| +...+..|..+|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566667777788888888888888887764 45666667777765 557788888887777654 333344
Q ss_pred HHHHHHHH----cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 323 LLIKGFVE----IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST----AGFMDKCKEIFDDMGKAGIKPDAHAYSIL 394 (637)
Q Consensus 323 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (637)
.+...+.. ..+.+.+...++.....+. ......+...+.. ......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 44433332 3455667777776666542 2222223333332 33455566666655553 355666666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006632 395 AKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 395 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
...|.. ..+...+...++...+.| +..+...+...|.. ..+.++|+..|++..+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666654 345556666666666543 55555555555554 456667777777666654 3445555555
Q ss_pred HHHh----cCChhHHHHHHHHHHHCC
Q 006632 467 GYSE----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 467 ~~~~----~g~~~~A~~~~~~m~~~g 488 (637)
.|.+ ..+.++|.++|++..+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5543 225566666666665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=7.4e-06 Score=76.24 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006632 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD------VVTYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
++..+...+...|++++|+..|+++........ ...+..++..+...|+++.|...+++..+
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555544321110 01122233344445555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=6.7e-06 Score=64.46 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=5.1
Q ss_pred HcCChhHHHHHHHH
Q 006632 84 ERGKPQEAQAIFNN 97 (637)
Q Consensus 84 ~~g~~~~A~~~~~~ 97 (637)
+.|++++|+..|++
T Consensus 15 ~~g~~~eAi~~~~~ 28 (117)
T d1elwa_ 15 SVGNIDDALQCYSE 28 (117)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 33333333333333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5.2e-06 Score=69.35 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006632 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
......|.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|+++++.... +...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 344667889999999999999988875 678888999999999999999999999999886432 557888899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC
Q 006632 472 RQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~ 492 (637)
|++++|...+++... +.|+
T Consensus 92 g~~~eA~~~~~~a~~--~~p~ 110 (159)
T d1a17a_ 92 GKFRAALRDYETVVK--VKPH 110 (159)
T ss_dssp TCHHHHHHHHHHHHH--HSTT
T ss_pred CCHHHHHHHHHHHHH--cCCC
Confidence 999999999998877 4455
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=5.4e-06 Score=69.28 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=41.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006632 116 ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (637)
.+.+.|++++|...|.++++.. +.+...|..+...|...|++++|...|++..+..+. +..+|..+..+|...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444443 334444444444444444555554444444443322 33444444444444555555
Q ss_pred HHHHHHHHHh
Q 006632 196 SVKLLDLMSR 205 (637)
Q Consensus 196 A~~~~~~m~~ 205 (637)
|...|++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1.5e-05 Score=74.09 Aligned_cols=164 Identities=10% Similarity=-0.047 Sum_probs=91.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 006632 184 IKGYGIAGKPEESVKLLDLMSRE----GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS----GM-KPDVVTYNTI 254 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~l 254 (637)
...|...|++++|.+.|.+.... +..+.-..+|..+..+|.+.|++++|...+++.... |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566777777777777766542 100111346777777777777777777777765432 10 0112344455
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HHHH
Q 006632 255 ATAYAQ-NGEADQAEEVIVEMEHN----GVQP-NGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN-----L-VIFN 322 (637)
Q Consensus 255 i~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~ 322 (637)
...|.. .|++++|...|.+..+. +.++ ...++..+...|.+.|++++|+..|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555543 47777777777665431 1111 123456667777777777777777777665421111 0 1223
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHhhC
Q 006632 323 LLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 323 ~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
..+..+...++++.|...++...+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3333445566666666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=2.9e-06 Score=74.16 Aligned_cols=97 Identities=14% Similarity=-0.022 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006632 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETL 464 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l 464 (637)
|+...+...+..|.+.|++++|+..|.++++.. |.+...|..++.+|.+.|++++|+..|+++++.. | +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 344444455555556666666666665555543 4455555555556666666666666666555432 3 34455555
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 006632 465 MWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.+|...|++++|+..|+++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555666666666665555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=3.8e-06 Score=73.34 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006632 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLL 499 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 499 (637)
|+...+...+..|.+.|++++|+..|+++++..+ -+...|..++.+|...|++++|+..|++..+ +.|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 6777788889999999999999999999998653 3777899999999999999999999999876 6676 5689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 500 AEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 500 ~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+.++.+.|++++|...++++....|
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999876655
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.9e-06 Score=66.91 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 006632 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNL-KTFETLMWGY 468 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 468 (637)
.++..+...+++++|.+.|++....+ +.++.++..+..++.+.+ ++++|+.+|+++...+..|+. .++..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34455555556666666666655543 445555555555555433 233456666655543322221 2445555556
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH
Q 006632 469 SEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
...|++++|++.|+++.+ +.|+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCC
Confidence 666666666666666555 44543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=7.9e-06 Score=63.42 Aligned_cols=84 Identities=7% Similarity=-0.006 Sum_probs=35.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006632 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
.+.+.|++++|...|++.++.. |.+..+|..+..++.+.|++++|+..|++.++..+. +...+..+...|...|+.++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence 3444444444444444444332 223444444444444444444444444444442211 23344444444444444444
Q ss_pred HHHHHH
Q 006632 477 AEEILQ 482 (637)
Q Consensus 477 A~~~~~ 482 (637)
|++.++
T Consensus 103 A~~~l~ 108 (112)
T d1hxia_ 103 ALASLR 108 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=1.2e-05 Score=62.35 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.|++++|+..|++..+..+. +..+|..+..++.+.|++++|+..|++..+.. |.+..+|..+...|...|++++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCCHHH
Confidence 33444444444444444443322 34444444444444444444444444444432 2334444444444444444444
Q ss_pred HHHHHHH
Q 006632 232 AWNVMHK 238 (637)
Q Consensus 232 A~~~~~~ 238 (637)
|++.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.1e-06 Score=64.23 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 006632 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP---EKAEELLMTMIESGFHPN-VVIFTTIISG 432 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~-~~~~~~li~~ 432 (637)
..+++.+...+++++|.+.|+..+..+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777778888889999998888865 45778888888888775544 468888888876532222 2367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006632 433 WCSDGSMDRAIEVFDKMCEHGVSPNLK 459 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (637)
|.+.|++++|++.|+++++. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 89999999999999998884 45543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.7e-05 Score=61.94 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHH
Q 006632 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PN-----LKTFETLM 465 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-----~~~~~~l~ 465 (637)
..+...|.+.|++++|+..|.+.++.+ +.+..+|..+..+|.+.|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345555666666666666666666553 445666666666666666666666666665542100 00 12444555
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 006632 466 WGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...+++++|++.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555555566666666655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0043 Score=57.42 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=84.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
.+...+.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. .+..+|..+...+....
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 356667788888888888887642 667777788888888887776543 35678888888888777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006632 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
....|. +.......++.....++..|-..|.+++...+++...... +.+...++-++..|++.+
T Consensus 84 e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 84 EFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp CHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHhC
Confidence 665432 2222233466666778888888888888888888776432 467777888888888764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.5e-05 Score=63.47 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG--VHPQ----KSTFLL 498 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 498 (637)
.+..++..+...|++++|+..|++.++.+.. +...+..+..+|.+.|++++|+..++++.+.. .... ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4556788899999999999999999987543 67899999999999999999999999986411 1111 246778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhh
Q 006632 499 LAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 499 l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
++..+...+++++|...+++.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 8899999999999999999987553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.0064 Score=56.21 Aligned_cols=49 Identities=12% Similarity=-0.005 Sum_probs=28.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+..+.+.++..-...+++.....| +.....++.++|...++++.-+..+
T Consensus 255 V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 255 VNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 333445555555666666655434 2356677777777777765544444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00014 Score=60.91 Aligned_cols=126 Identities=9% Similarity=-0.087 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
.+....+.+.+.|++++|+..|.+.+........ ....-......+ -..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 3445567888999999999999888763111000 000000000000 0124555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
+.|++++|+..++...+..+. ++.+|..+..+|...|++++|+..|+...+.. |.|......+....
T Consensus 74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 777777777777776665433 56666667777777777777777777766653 33444444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=0.00018 Score=60.37 Aligned_cols=60 Identities=17% Similarity=-0.020 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|+.+..+|.+.|++++|+..+++.++.. |.++.+|..++.+|...|++++|+..|+++.+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555555555555555442 33445555555555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=0.00022 Score=58.50 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+|..+..+|.+.|++++|+..++++++..+ .+..+|..++.++...|++++|+..|++..+ +.|+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n 134 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNN 134 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTC
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 455566666667777777777776666432 2555666666677777777777777666665 44543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=0.00042 Score=56.71 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH----KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
...+..-.+.+.+.|++.+|+..|.+.+..-. .++..... ... .....+++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~------------------~~~------~~~~~~~~N 72 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD------------------KKK------NIEISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH------------------HHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH------------------hhh------hHHHHHHhh
Confidence 44566677888899999999999998876311 01111100 000 011245667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006632 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
+..+|.+.|++++|+..+++..+.++. +..+|..+..+|...|++++|+..|++..+.. |.|..+...+-.+
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~~~ 144 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 777888888888888888888776543 67788888888888888888888888887764 3455555554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=1.2e-05 Score=81.08 Aligned_cols=111 Identities=6% Similarity=-0.091 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006632 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV 399 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (637)
.+..+...+.+.++.+.|...+....... ...++..+...+...|++++|+..|.+..+.. +.+...|+.|+..|.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34444444444455554444443332211 12344455556666666666666666665543 334556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006632 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
..|+..+|...|.+..... +|-..++..|...+.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 6666666666666666553 4555666666555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=9.8e-06 Score=81.70 Aligned_cols=117 Identities=12% Similarity=-0.063 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006632 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 351 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
++...+..+...+.+.|+.+.|...+....... ...++..++..+...|++++|...|++..+.. |.+...|+.++
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg 193 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLA 193 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 345567777788888999999888877765431 24577788999999999999999999999874 66778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006632 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
..+...|+..+|+..|.+.+... +|-..++..|...+.+..
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999864 467788999988887644
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00024 Score=59.47 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|..+..++.+.|++++|+..++++++... .+...|..++.++...|++++|+..|++..+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444555555555555555544321 1333444455555555555555555554444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=0.00046 Score=58.02 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=82.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006632 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 359 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 438 (637)
........|++++|.+.|...+..-..+ . +......+.+...-..+.. .....+..++.++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~--~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGP--V--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSS--T--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccc--c--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3345677888888888888877642111 0 0000000011111111111 124567788889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHH
Q 006632 439 MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTF 496 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 496 (637)
+++|+..++++++... -+...|..++.+|...|+..+|++.|+++. +.|+.|..++-
T Consensus 83 ~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 83 ASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred chHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999999998653 367789999999999999999999998874 47999987653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.71 E-value=0.00028 Score=59.03 Aligned_cols=63 Identities=10% Similarity=-0.083 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 460 TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.|..+..++.+.|++++|+..++++.+ +.|+ ...|..++.++.+.|++++|+..++++....|
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 444555555556666666665555554 2333 33555555556666666666666665555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.71 E-value=0.00099 Score=55.43 Aligned_cols=60 Identities=13% Similarity=-0.024 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006632 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|+.+..+|.+.|++++|+..+++.++... .+...|..+..++...|++++|+..|+++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555554322 2344555555555555555555555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=0.00011 Score=59.68 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=52.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006632 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE----------QEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
.+.+.+++|+..|+..++.. +.+..++..+..+|... +.+++|+..|+++++.+ |.+..+|..++.+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 34455666666666665543 33555555555555432 33456666666666654 55566666666666
Q ss_pred HhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHH
Q 006632 434 CSDGS-----------MDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 434 ~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
...|+ +++|.+.|+++.+ +.|+...+.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~ 123 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 123 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHH
Confidence 55432 4556666666665 334444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.0007 Score=56.87 Aligned_cols=125 Identities=8% Similarity=0.011 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006632 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...........|++++|.+.|.........+ .. .......-+...-..+.. .....+..++..+.+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~--~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP--VL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--TT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc--cc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344456788999999999999988753111 00 000110111111111111 134567889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 006632 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKT 460 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 460 (637)
.|++++|+..++++.+.. +-+...|..++.+|...|+..+|++.|+++. +.|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999999999875 7789999999999999999999999999874 3699999765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.63 E-value=0.0012 Score=54.89 Aligned_cols=129 Identities=8% Similarity=-0.069 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006632 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG---GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+..+....+.+.+.|++.+|+..|.+.+.. ....+... ......+ ...+|+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhH
Confidence 344556677888899999999988876641 11111100 0000000 12345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006632 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
..+|.+.|++++|+..++...+..+. +..+|..+..+|...|++++|+..|.++.... |.+......+.......+
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence 66677777777777777777766533 66677777777777777777777777777653 445555555555444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.50 E-value=0.00013 Score=59.26 Aligned_cols=101 Identities=13% Similarity=-0.020 Sum_probs=74.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD----------GSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
|-+.+.+++|+..|+...+.. |.+..++..+..++... +.+++|+..|+++++..+. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 456677999999999998875 77888888888887744 4467899999999886432 56788888888
Q ss_pred HHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006632 468 YSEARQ-----------PWRAEEILQIMKAFGVHPQKSTFLLLAEA 502 (637)
Q Consensus 468 ~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 502 (637)
|...|+ +++|.+.|++..+ +.|+...|...+..
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH
Confidence 876653 4667777777766 66776666544433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.50 E-value=7e-05 Score=67.68 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=84.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhH
Q 006632 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWR 476 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 476 (637)
..+.|++++|+..+++.++.. |.|...+..++..++..|++++|...|+...+.. |+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 346799999999999999885 7788999999999999999999999999998853 543 345445444443333332
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006632 477 AEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
+..-.......+ .|+ ...+.....++.+.|+.++|.++++++....|.
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 221111100111 222 234455667788999999999999998776553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.00021 Score=64.41 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006632 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+.|++++|+..+++.++..+. |...+..+...|+..|++++|...|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445555555555555555433 4555555555555555555555555555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.10 E-value=0.0033 Score=51.31 Aligned_cols=95 Identities=16% Similarity=-0.030 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCC-
Q 006632 430 ISGWCSDGSMDRAIEVFDKMCEHGV-SPN----------LKTFETLMWGYSEARQPWRAEEILQIMKA-----FGVHPQ- 492 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~- 492 (637)
+..+...|++++|+..|++.++... .|+ ..+|..+..+|...|++++|...+++..+ ....++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345566777777777777764210 011 34677777788888888888877777643 112222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006632 493 ----KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 493 ----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
...+..++.+|...|++++|...++++.+..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12456678889999999999999999876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.0042 Score=50.65 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=69.8
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 006632 389 HAYSIL--AKGYVREQEPEKAEELLMTMIESGF-HP----------NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--- 452 (637)
Q Consensus 389 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 452 (637)
.+|..+ ...+...|++++|+..|++.++... .| ....|+.+..+|...|++++|+..+++.++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345544 4556677888888888888775310 11 1357888889999999999999999888742
Q ss_pred --CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006632 453 --GVSPN-----LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 453 --~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
...++ ...+..+..+|...|++++|+..|++..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2246778889999999999999998875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.013 Score=42.83 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006632 391 YSILAKGYVREQEPEKAEELLMTMIESG-----FHP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
+-.++..+.+.|+++.|...|++..+.. ..+ ...++..+..+|.+.|++++|+..++++++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445566666666666666666654320 011 1345566666666666666666666666653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.014 Score=42.52 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 144 FFNAVINAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 170 (637)
+++.|..+|.+.|++++|+..++++.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 334444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.10 E-value=0.09 Score=40.85 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 006632 229 ITEAWNVMHKMAA 241 (637)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (637)
.++|+++|++..+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhc
Confidence 3444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.09 E-value=0.092 Score=40.80 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 006632 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQ 473 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 473 (637)
.+.++|.+++++..+.| ++.....|...|.. ..+.++|+++|++..+.| ++.....|...|.+ ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555554433 33333334433332 234455555555555543 23333334333333 224
Q ss_pred hhHHHHHHHHHHHCC
Q 006632 474 PWRAEEILQIMKAFG 488 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g 488 (637)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 444555555444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=3.2 Score=39.39 Aligned_cols=388 Identities=10% Similarity=0.008 Sum_probs=175.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHH
Q 006632 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALT--IQKRFNSIHSIMSQVEENGMDPDSI----FFNAVINA 151 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~ 151 (637)
.+....++|+...+.++...+.+ . | ...|...-..-. ......++...+ .+ .|+.. .-...+..
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl---~~---~p~~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFV---RA---NPTLPPARTLQSRFVNE 81 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHH---HH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHH---HH---CCCChhHHHHHHHHHHH
Confidence 35566788999988888887742 2 3 233332222222 223344433333 33 23322 23344566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006632 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.+++......+. ..+.+...-.....+....|+.++|...+..+-..+...|+. ...+...+.+.|.+
T Consensus 82 L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~~~l-- 152 (450)
T d1qsaa1 82 LARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASGKQ-- 152 (450)
T ss_dssp HHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTTCS--
T ss_pred HHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCCC--
Confidence 777888766554332 123456666677788888899888888888776666444433 22222222222221
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------------------CCCCChhhHHH
Q 006632 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN-----------------------GVQPNGRTCGI 288 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~~ 288 (637)
+...+-.-+......|+...|..+...+... ....+......
T Consensus 153 ---------------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~ 217 (450)
T d1qsaa1 153 ---------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQM 217 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHH
Confidence 1111111222222233333333322211000 00111121112
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006632 289 IISGYCK--EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGF----VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 289 li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (637)
+..++.+ ..+.+.|..++....... ..+..-+..+-... ...+..+.+...+....... .+.....-.+..
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~ 294 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRM 294 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHH
Confidence 2222222 234555555555554322 11222222221111 12233344444444444332 222322223333
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006632 363 WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
....+++..+...+..+... ........--+..++...|+.+.|...|..+.. .++ |-..+.+ .+.|..-.
T Consensus 295 al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~~- 365 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEYE- 365 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCCC-
T ss_pred HHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCCC-
Confidence 34455666666555554322 111233334455556666666666666666543 222 2222211 11111000
Q ss_pred HHHHHHHHHCCC--CCC-HH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006632 443 IEVFDKMCEHGV--SPN-LK---TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 443 ~~~~~~m~~~~~--~p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+....+ .++ .. .-..-+..+...|+..+|...|..+... .+......+.....+.|..+.|+...
T Consensus 366 ------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 366 ------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp ------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHH
Confidence 000000 000 00 0112345667788888888888777642 24555667777888888888888877
Q ss_pred HHHh
Q 006632 517 SKIK 520 (637)
Q Consensus 517 ~~~~ 520 (637)
.+..
T Consensus 437 ~~~~ 440 (450)
T d1qsaa1 437 IAGK 440 (450)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7663
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.18 E-value=1.1 Score=33.14 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=77.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 006632 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKE 374 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 374 (637)
-.|.+++..++..+.... .+..-||-++--....-+-+-..++++.+-+. .|. ..++++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 356677777777776652 34445555554444444444444444443221 111 12223322222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006632 375 IFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 454 (637)
.+-.+ ..+......-++...++|.-+.-.++++.+.+.+ .+++...-.+..+|.+.|...++-+++.++.+.|+
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 22211 1233444555666677777777777777766644 67777777777777777777777777777777765
Q ss_pred C
Q 006632 455 S 455 (637)
Q Consensus 455 ~ 455 (637)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.92 Score=33.89 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=7.1
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 006632 503 RRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~ 521 (637)
+.+.|++++|.++++++..
T Consensus 83 yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 83 CYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHc
Confidence 3333333333333333333
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=1.2 Score=33.23 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006632 386 PDAHAYSILAKGYVREQE---PEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+...+--....++++..+ .++++.+|+++.+.+ +.+. ..+-.|..+|.+.|++++|.+.++.+++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444444444544432 345555555555432 2222 3444555556666666666666666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.77 E-value=1.8 Score=32.06 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006632 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
..+...++....+|+-+.-.++++.+.+.+ ++++.....+..+|.+.|...++.+++.+.-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444455555555555555555544432 44555555555555555555555555555555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.56 E-value=1.6 Score=30.59 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006632 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.-+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44566666777777888999999999999999999999999999988755
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=81.59 E-value=21 Score=33.23 Aligned_cols=205 Identities=9% Similarity=-0.023 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh
Q 006632 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIIS----GYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (637)
..+.+.|...+........ .+...+..+-. .....+..+.+...+......+ .+.......+......+++..
T Consensus 227 ~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred ccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHH
Confidence 3578888888888765432 22222222222 2234566788888888777654 344444444555567789999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006632 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+...+..+.... .......-=+..++...|+.+.|...|..+... ++ |-.++.+ .+.|..-. +-.. .
T Consensus 304 ~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~---~~~~--~ 370 (450)
T d1qsaa1 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE---LKID--K 370 (450)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC---CCCC--C
T ss_pred HHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC---CCcC--C
Confidence 998888875432 223444445678889999999999999998752 33 3333222 12222100 0000 0
Q ss_pred CCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006632 417 SGFHPN-VVI---FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 417 ~~~~~~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
....+. ... -..-+..+...|....|...|..+... .+......+.....+.|.++.|+......
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000001 100 112345677889999999999988753 35666777788888999999998776554
|