Citrus Sinensis ID: 006688
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 635 | 2.2.26 [Sep-21-2011] | |||||||
| B9DGD6 | 743 | Acetate--CoA ligase ACS, | yes | no | 0.869 | 0.742 | 0.835 | 0.0 | |
| Q9NR19 | 701 | Acetyl-coenzyme A synthet | yes | no | 0.798 | 0.723 | 0.591 | 0.0 | |
| Q9QXG4 | 701 | Acetyl-coenzyme A synthet | yes | no | 0.798 | 0.723 | 0.577 | 1e-179 | |
| Q9VP61 | 670 | Acetyl-coenzyme A synthet | yes | no | 0.807 | 0.765 | 0.542 | 1e-174 | |
| Q056J9 | 654 | Acetyl-coenzyme A synthet | yes | no | 0.785 | 0.762 | 0.550 | 1e-166 | |
| Q04P35 | 654 | Acetyl-coenzyme A synthet | yes | no | 0.785 | 0.762 | 0.550 | 1e-166 | |
| Q8EYG2 | 661 | Acetyl-coenzyme A synthet | yes | no | 0.796 | 0.765 | 0.543 | 1e-165 | |
| Q72LY9 | 661 | Acetyl-coenzyme A synthet | yes | no | 0.796 | 0.765 | 0.543 | 1e-165 | |
| A0L576 | 644 | Acetyl-coenzyme A synthet | yes | no | 0.777 | 0.767 | 0.536 | 1e-164 | |
| Q6FYL4 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.777 | 0.757 | 0.533 | 1e-163 |
| >sp|B9DGD6|ACS_ARATH Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/553 (83%), Positives = 515/553 (93%), Gaps = 1/553 (0%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCSR 635
F GYYF+GDGCSR
Sbjct: 588 FAGYYFSGDGCSR 600
|
Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation. May play a limited role in the biosynthesis of lipids. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/526 (59%), Positives = 379/526 (72%), Gaps = 19/526 (3%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P + SR A VPS Q+Y E+++RSVE+P FW DIA EFYWK N DV KG
Sbjct: 31 PPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCPGPFLRYNFDVTKGK 90
Query: 189 VKIEWFKGGITNICYNCLDRNI-EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN 247
+ IEW KG TNICYN LDRN+ E LGDKVA YWE N+PG +TY QLL QVCQ +N
Sbjct: 91 IFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTQITYHQLLVQVCQFSN 150
Query: 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 307
L+ G++KGD V IY+PM+ EL +AMLACARIGA+HS+VFAGFSS+SL +RI+D +
Sbjct: 151 VLRKQGIQKGDRVAIYMPMIPELVVAMLACARIGALHSIVFAGFSSESLCERILDSSCSL 210
Query: 308 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN-------------QSAMT 354
+IT++A RG K ++LK++ D AL +C + G V C+ ++ QS
Sbjct: 211 LITTDAFYRGEKLVNLKELADEALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPI 270
Query: 355 REN-----TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ + W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT
Sbjct: 271 KRSCPDVQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTV 330
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
GGYM++ ATTFKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD
Sbjct: 331 GGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPD 390
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
R W IVDKYKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+
Sbjct: 391 VNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWY 450
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 589
VVG RCPI DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EG
Sbjct: 451 HRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEG 510
Query: 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
E GYL K WPG RT+YG+HER+ETTYFK FPGYY TGDGC R
Sbjct: 511 EAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQR 556
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/526 (57%), Positives = 379/526 (72%), Gaps = 19/526 (3%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P + R A VPS Q+Y E+++RSVE+P FW +IA EFYWK N DV KG
Sbjct: 31 PPPEVRRSAHVPSLQRYRELHRRSVEEPREFWGNIAKEFYWKTACPGPFLQYNFDVTKGK 90
Query: 189 VKIEWFKGGITNICYNCLDRNI-EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN 247
+ EW KG TNICYN LDRN+ E LGDKVA YWE N+PG +TY +LL QVCQ +N
Sbjct: 91 IFTEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTKITYRELLVQVCQFSN 150
Query: 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 307
L+ G++KGD V IY+PM++EL +AMLACAR+GA+HS+VFAGFS++SL +RI+D +
Sbjct: 151 VLRKQGIQKGDRVAIYMPMILELVVAMLACARLGALHSIVFAGFSAESLCERILDSSCCL 210
Query: 308 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE---------NQSAMTRENT 358
+IT++A RG K ++LK++ D +L++C + G V C+ + N S
Sbjct: 211 LITTDAFYRGEKLVNLKELADESLEKCREKGFPVRCCIVVKHLGRAELGMNDSPSQSPPV 270
Query: 359 K---------WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
K W +G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT
Sbjct: 271 KRPCPDVQICWNEGVDLWWHELMQQAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTI 330
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
GGYM++ ATTFKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD
Sbjct: 331 GGYMLYVATTFKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPD 390
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
GR W IVDKYKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+
Sbjct: 391 EGRLWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWY 450
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 589
VVG RCPI DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EG
Sbjct: 451 HRVVGSQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEG 510
Query: 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
E GYL K WPG RT+YG+H R+ETTYFK FPGYY TGDGC R
Sbjct: 511 EAEGYLVFKQPWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRR 556
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase OS=Drosophila melanogaster GN=AcCoAS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 283/522 (54%), Positives = 371/522 (71%), Gaps = 9/522 (1%)
Query: 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQ-RVCSEN 181
E I P+ S+ A + S ++Y + Y+ S+++PA FW+ +A +F+W+ Q + N
Sbjct: 4 EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADQDKFLKYN 63
Query: 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPG-VDATLTYSQLLQ 240
++ KG + I+W +G TN+CYN LDRN+ GLGD++A YWE N P LTY +LL+
Sbjct: 64 FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYWEGNHPDDYSRGLTYRKLLE 123
Query: 241 QVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300
+VC+ AN LKD G++KGD V IY+PM++ELPIAMLACARIGAVHS+VFAGFS DSLA+R+
Sbjct: 124 EVCRFANVLKDHGIRKGDRVSIYMPMILELPIAMLACARIGAVHSIVFAGFSPDSLAERM 183
Query: 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT------ 354
DCK K++IT++ RG K ++LK + D AL++ + G SV+ C+ + +T
Sbjct: 184 FDCKAKLLITADGAWRGEKPLYLKALCDTALEKVEEMGHSVEKCIVVSHLKRVTPCQPDH 243
Query: 355 -RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
E W D RD WW + + C EW+DAEDPLF+LYTSGSTGKPKGVLHTT GY+
Sbjct: 244 VEEEIPWTDDRDYWWHEEMEDKEPACYPEWMDAEDPLFMLYTSGSTGKPKGVLHTTAGYL 303
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
++ ATTFK FDYKP D+YWCTAD GWITGH+YV YGP+ NGA+ V+FEG P +P + R
Sbjct: 304 LYAATTFKIVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIFEGTPFFPGNDRY 363
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
W ++DKYKVT FYTAPT +R+LM+ G V +++ L+VLGSVGEPINP AW W++ +
Sbjct: 364 WSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNLSGLKVLGSVGEPINPEAWLWYYKYI 423
Query: 534 GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
G +C I DT+WQTETGG +ITPLPGA P KPGSA+FPFFGV+P ++DE G+EI+GE G
Sbjct: 424 GKEQCSIVDTFWQTETGGHVITPLPGATPMKPGSASFPFFGVKPTLLDECGIEIKGEGEG 483
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
YL WPG RTLY +HER+E TYF FPGYY TGDG R
Sbjct: 484 YLVFSQPWPGMMRTLYNNHERFEDTYFSKFPGYYCTGDGARR 525
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q056J9|ACSA_LEPBL Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/514 (55%), Positives = 359/514 (69%), Gaps = 15/514 (2%)
Query: 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185
IVLPS +F + + + + + Y +YK S+E+P FWA A+ W +KW + + N D +
Sbjct: 6 IVLPSAEFKKNSNI-TLKDYKSLYKESIENPNKFWAKEANRLTWFKKWTKVL---NHDFK 61
Query: 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQL 245
N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY + ++V +
Sbjct: 62 --NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPSESKVLTYYDVYREVNRF 119
Query: 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 305
AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L RI DCKP
Sbjct: 120 ANVLKKYGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEALQSRIDDCKP 179
Query: 306 KVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365
K+++T++ RG K I LK VD AL++ + +V V N+S + W+DGRD
Sbjct: 180 KLIVTADGGFRGGKPIELKRNVDIALEKSKEDVKTVIVVRRTGNESGLV-----WKDGRD 234
Query: 366 IWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423
W+ ++ P C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++ TF Y
Sbjct: 235 YWYHFLISDPDLSPYCKPESMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGVNLTFHYV 294
Query: 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483
FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR WD++DKY V
Sbjct: 295 FDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFWDVIDKYGVN 354
Query: 484 IFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543
IFYTAPT +R+LMR+G +V + + SLR+LGSVGEPINP AW W+F ++G +CPI DT
Sbjct: 355 IFYTAPTAIRALMREGLTHVQKRNLSSLRLLGSVGEPINPEAWEWYFKIIGKEKCPIVDT 414
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
WWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE SG LCIKS W
Sbjct: 415 WWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEINDKGEVSGNLCIKSPW 474
Query: 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
P R +YGD +R+ TYF F GYYFTGDG R
Sbjct: 475 PSMMRGVYGDSKRFFDTYFSQFKGYYFTGDGARR 508
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q04P35|ACSA_LEPBJ Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/514 (55%), Positives = 359/514 (69%), Gaps = 15/514 (2%)
Query: 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185
IVLPS +F + + + + + Y +YK S+E+P FWA A+ W +KW + + N D +
Sbjct: 6 IVLPSAEFKKNSNI-TLKDYKSLYKESIENPNKFWAKEANRLTWFKKWTKVL---NHDFK 61
Query: 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQL 245
N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY + ++V +
Sbjct: 62 --NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPSESKVLTYYDVYREVNRF 119
Query: 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 305
AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L RI DCKP
Sbjct: 120 ANVLKKYGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEALQSRIDDCKP 179
Query: 306 KVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365
K+++T++ RG K I LK VD AL++ + +V V N+S + W+DGRD
Sbjct: 180 KLIVTADGGFRGGKPIELKRNVDIALEKSKEDVKTVIVVRRTGNESGLV-----WKDGRD 234
Query: 366 IWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423
W+ ++ P C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++ TF Y
Sbjct: 235 YWYHFLIGDPDLSPYCKPESMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGVNLTFHYV 294
Query: 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483
FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR WD++DKY V
Sbjct: 295 FDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFWDVIDKYGVN 354
Query: 484 IFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543
IFYTAPT +R+LMR+G +V + + SLR+LGSVGEPINP AW W+F ++G +CPI DT
Sbjct: 355 IFYTAPTAIRALMREGLTHVQKRNLSSLRLLGSVGEPINPEAWEWYFKIIGKEKCPIVDT 414
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
WWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE SG LCIKS W
Sbjct: 415 WWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEINDKGEVSGNLCIKSPW 474
Query: 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
P R +YGD +R+ TYF F GYYFTGDG R
Sbjct: 475 PSMMRGVYGDSKRFFDTYFSQFKGYYFTGDGARR 508
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8EYG2|ACSA_LEPIN Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/523 (54%), Positives = 360/523 (68%), Gaps = 17/523 (3%)
Query: 117 EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQR 176
E ++ E +V PS +F + A + S + Y +YK S+E+P FWA A+ W +KW +
Sbjct: 6 EVMAKER--VVSPSAEFKKNANI-SLKNYKSLYKESIENPNKFWAREANRLIWFKKW-TK 61
Query: 177 VCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYS 236
V S + N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY
Sbjct: 62 VLSHDFK----NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPTESRVLTYY 117
Query: 237 QLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296
+ ++V + AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L
Sbjct: 118 DVYREVNRFANILKKFGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEAL 177
Query: 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
RI DCKPK+V+T++ RG K I LK VD AL++ + +V V N+S +T
Sbjct: 178 QSRIDDCKPKLVVTADGGFRGGKPIELKKNVDLALEKSKEKVKTVIVVRRTGNESGLT-- 235
Query: 357 NTKWQDGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
W+DG+D W+ ++ P+ C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++
Sbjct: 236 ---WKDGQDYWYHFLMNDPELSAYCKPEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYLL 292
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSW 474
TF Y FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR W
Sbjct: 293 GANLTFHYVFDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFW 352
Query: 475 DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVG 534
D++DKY V IFYTAPT +R+LMR+G ++ + SLR+LGSVGEPINP AW W+F +G
Sbjct: 353 DVIDKYGVNIFYTAPTAIRALMREGLNHIQKRDLSSLRLLGSVGEPINPEAWEWYFKNIG 412
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECS 592
+CPI DTWWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE S
Sbjct: 413 KGKCPIVDTWWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEITDKGEVS 472
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
G LCIK WP R +YGD +R+ TYF F GYYFTGDG R
Sbjct: 473 GNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARR 515
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q72LY9|ACSA_LEPIC Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/523 (54%), Positives = 360/523 (68%), Gaps = 17/523 (3%)
Query: 117 EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQR 176
E ++ E +V PS +F + A + S + Y +YK S+E+P FWA A+ W +KW +
Sbjct: 6 EVMAKER--VVSPSAEFKKNANI-SLKNYKSLYKESIENPNKFWAREANRLIWFKKW-TK 61
Query: 177 VCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYS 236
V S + N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY
Sbjct: 62 VLSHDFK----NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPTESRVLTYY 117
Query: 237 QLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296
+ ++V + AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L
Sbjct: 118 DVYREVNRFANILKKFGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEAL 177
Query: 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
RI DCKPK+V+T++ RG K I LK VD AL++ + +V V N+S +T
Sbjct: 178 QSRIDDCKPKLVVTADGGFRGGKPIELKKNVDLALEKSKEKVKTVIVVRRTGNESGLT-- 235
Query: 357 NTKWQDGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
W+DG+D W+ ++ P+ C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++
Sbjct: 236 ---WKDGQDYWYHFLMNDPELSAYCKPEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYLL 292
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSW 474
TF Y FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR W
Sbjct: 293 GANLTFHYVFDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFW 352
Query: 475 DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVG 534
D++DKY V IFYTAPT +R+LMR+G ++ + SLR+LGSVGEPINP AW W+F +G
Sbjct: 353 DVIDKYGVNIFYTAPTAIRALMREGLNHIQKRDLSSLRLLGSVGEPINPEAWEWYFKNIG 412
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECS 592
+CPI DTWWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE S
Sbjct: 413 KGKCPIVDTWWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEITDKGEVS 472
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
G LCIK WP R +YGD +R+ TYF F GYYFTGDG R
Sbjct: 473 GNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARR 515
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A0L576|ACSA_MAGSM Acetyl-coenzyme A synthetase OS=Magnetococcus sp. (strain MC-1) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 274/511 (53%), Positives = 362/511 (70%), Gaps = 17/511 (3%)
Query: 127 VLPSD-DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA-SEFYWKEKWGQRVCSENLDV 184
V P D + + AL+ + ++Y EMYKRS++DPA FWA+ A + W +KW + + D+
Sbjct: 6 VYPVDPNVAANALI-NEEQYQEMYKRSIDDPAAFWAEQAEARIDWFKKWDNVL---DFDL 61
Query: 185 RKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQ 244
RKG++K WF+G N+ YNC+DR++E GDKVAI WE ++P D +TY +L V +
Sbjct: 62 RKGHIK--WFEGAKLNVSYNCIDRHLEK-RGDKVAILWEGDNPAADRKITYRELSALVNK 118
Query: 245 LANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCK 304
AN LK GVKKGD V IY+PM+ E +AMLAC RIGAVHS+VF GFS D+L RI+D +
Sbjct: 119 FANALKARGVKKGDRVCIYMPMIPEAAVAMLACTRIGAVHSIVFGGFSPDALRDRIIDAE 178
Query: 305 PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364
+VVIT++ RG K I L+ V+ AL +C +V C ++ T+ +W +GR
Sbjct: 179 CRVVITADGGMRGSKKIPLRKNVETALAQCP----NVHTCFVVQD----TQLEIEWTEGR 230
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
D+W+ + + C E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY+++ + T +Y F
Sbjct: 231 DVWYHEAIAAASADCPPEEMDAEDPLFVLYTSGSTGKPKGVLHTTGGYLLYASITHQYIF 290
Query: 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
DY D+YWCTAD GW+TGH+Y+ YGP+ NGA+ ++FEG PTYPD+ R W +VDK++V+I
Sbjct: 291 DYHEDDIYWCTADVGWVTGHTYIVYGPLANGATTLMFEGVPTYPDASRFWQVVDKHQVSI 350
Query: 485 FYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544
FYTAPT +RS+M G+ V SR+SLR+LGSVGEPINP AW W+++VVG+ RCPI DTW
Sbjct: 351 FYTAPTAIRSIMSQGDALVKATSRQSLRILGSVGEPINPEAWEWYYHVVGEGRCPIVDTW 410
Query: 545 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
WQTETGG +ITPLPGA P KPGSAT PFFGV P ++ +G E+EG C G L + WPG
Sbjct: 411 WQTETGGILITPLPGATPLKPGSATRPFFGVNPKVLSNEGKEMEGPCEGILVLDHPWPGM 470
Query: 605 FRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
RT+YGDH+R+ TYF +PGYYF GDGC R
Sbjct: 471 MRTVYGDHDRFINTYFANYPGYYFCGDGCRR 501
|
Magnetococcus sp. (strain MC-1) (taxid: 156889) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q6FYL4|ACSA_BARQU Acetyl-coenzyme A synthetase OS=Bartonella quintana (strain Toulouse) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 269/504 (53%), Positives = 352/504 (69%), Gaps = 10/504 (1%)
Query: 132 DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKI 191
D + AL+ + + Y + Y+ S+ DP FWA W + + +V + + + G+V I
Sbjct: 11 DIKKNALI-NEETYQKWYRESINDPEAFWAKHGQRIEWFKPY-TKVKNTSFN---GDVSI 65
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+W++ GITN+ YNC+DR+++ G+ +A+ WE N+P D +TY++L + VC+ AN LK+
Sbjct: 66 QWYEDGITNVAYNCIDRHLKNS-GNHIALIWEGNNPYHDKKITYNELYEHVCRFANILKN 124
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
GVKKGD V IYLPM+ E AMLACARIGA+HSV+FAGFSS+++A RI+DCK +IT+
Sbjct: 125 HGVKKGDRVTIYLPMIPEAAYAMLACARIGAIHSVIFAGFSSEAIADRIVDCKSTFIITA 184
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ RG K I LK+ +D A+D A+ G+ V+ L S W GRD W+ +
Sbjct: 185 DQGLRGGKLIKLKNNIDHAIDIAARRGVHVNQVLVIRRTSG----TIDWVKGRDFWYHEE 240
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
+ T C E ++AEDPLF+LYTSGSTGKPKGVLHTT GY+V+ + T +Y FDY P ++
Sbjct: 241 ISHAKTDCPAEMMNAEDPLFILYTSGSTGKPKGVLHTTAGYLVYVSMTHQYVFDYHPGEI 300
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
YWCTAD GWI+GHSY+ YGP+ NGA+ ++FEG PT+PD GR W+IVDK+KV YTAPT
Sbjct: 301 YWCTADIGWISGHSYLIYGPLCNGATTLMFEGIPTFPDQGRFWEIVDKHKVNTLYTAPTA 360
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R+LM GN +V R SLR+LG+VGEPINP AW+WF++ VGD+RCPI DTWWQTETGG
Sbjct: 361 IRALMGAGNSFVEHSKRTSLRLLGTVGEPINPEAWKWFYHTVGDNRCPILDTWWQTETGG 420
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
MITPLPGA K GSAT PFFGVQ I+D +G +EGE G LCI SWPG RTLY D
Sbjct: 421 HMITPLPGATQLKAGSATHPFFGVQLQIIDGEGNVLEGEAEGNLCIIDSWPGQMRTLYND 480
Query: 612 HERYETTYFKPFPGYYFTGDGCSR 635
HER+ TYF + G YFTGDGC R
Sbjct: 481 HERFIETYFSTYKGKYFTGDGCKR 504
|
Bartonella quintana (strain Toulouse) (taxid: 283165) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 635 | ||||||
| 296082228 | 769 | unnamed protein product [Vitis vinifera] | 0.892 | 0.737 | 0.857 | 0.0 | |
| 225451691 | 708 | PREDICTED: acetyl-coenzyme A synthetase, | 0.870 | 0.781 | 0.875 | 0.0 | |
| 380042390 | 776 | acyl-activating enzyme 15 [Cannabis sati | 0.888 | 0.726 | 0.839 | 0.0 | |
| 255543445 | 749 | acetyl-CoA synthetase, putative [Ricinus | 0.874 | 0.740 | 0.850 | 0.0 | |
| 297805208 | 743 | AMP binding protein [Arabidopsis lyrata | 0.921 | 0.787 | 0.791 | 0.0 | |
| 356570289 | 752 | PREDICTED: acetyl-coenzyme A synthetase- | 0.872 | 0.736 | 0.835 | 0.0 | |
| 356560404 | 752 | PREDICTED: acetyl-coenzyme A synthetase- | 0.872 | 0.736 | 0.832 | 0.0 | |
| 224128712 | 684 | predicted protein [Populus trichocarpa] | 0.851 | 0.790 | 0.854 | 0.0 | |
| 147816169 | 768 | hypothetical protein VITISV_019712 [Viti | 0.877 | 0.725 | 0.840 | 0.0 | |
| 145323645 | 743 | acetyl-CoA synthetase [Arabidopsis thali | 0.869 | 0.742 | 0.835 | 0.0 |
| >gi|296082228|emb|CBI21233.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/569 (85%), Positives = 530/569 (93%), Gaps = 2/569 (0%)
Query: 67 VVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDI 126
V MA+S +++ K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+
Sbjct: 60 VTMATSPASSSP--QRKILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDL 117
Query: 127 VLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRK 186
V PS DFS QALV SP+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR
Sbjct: 118 VFPSRDFSSQALVSSPEKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRN 177
Query: 187 GNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLA 246
GN+KIEWFKGG TNICYNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLA
Sbjct: 178 GNIKIEWFKGGRTNICYNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLA 237
Query: 247 NYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPK 306
NYLKD+GV+KGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPK
Sbjct: 238 NYLKDMGVRKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPK 297
Query: 307 VVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDI 366
VVITSNAVKRGPK I LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDI
Sbjct: 298 VVITSNAVKRGPKVISLKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDI 357
Query: 367 WWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426
WWQDVVPKYPT C+VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDY
Sbjct: 358 WWQDVVPKYPTTCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDY 417
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
KPSDVYWCTADCGWITGHSYVT+GPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFY
Sbjct: 418 KPSDVYWCTADCGWITGHSYVTFGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFY 477
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
TAPTLVRSLMRDG+EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ
Sbjct: 478 TAPTLVRSLMRDGDEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 537
Query: 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606
TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFR
Sbjct: 538 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFR 597
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCSR 635
TLYGDH+RYETTYFK FPGYYF+GDGCSR
Sbjct: 598 TLYGDHDRYETTYFKAFPGYYFSGDGCSR 626
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451691|ref|XP_002278518.1| PREDICTED: acetyl-coenzyme A synthetase, cytoplasmic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/553 (87%), Positives = 522/553 (94%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+V PS DFS QALV SP
Sbjct: 13 KILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDLVFPSRDFSSQALVSSP 72
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR GN+KIEWFKGG TNIC
Sbjct: 73 EKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRNGNIKIEWFKGGRTNIC 132
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLANYLKD+GV+KGDAV+I
Sbjct: 133 YNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLANYLKDMGVRKGDAVVI 192
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVITSNAVKRGPK I
Sbjct: 193 YLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITSNAVKRGPKVIS 252
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDIWWQDVVPKYPT C+VE
Sbjct: 253 LKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDIWWQDVVPKYPTTCDVE 312
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYKPSDVYWCTADCGWIT
Sbjct: 313 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKPSDVYWCTADCGWIT 372
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVT+GPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFYTAPTLVRSLMRDG+EY
Sbjct: 373 GHSYVTFGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY 432
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 433 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 492
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFRTLYGDH+RYETTYFK
Sbjct: 493 QKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFRTLYGDHDRYETTYFKA 552
Query: 623 FPGYYFTGDGCSR 635
FPGYYF+GDGCSR
Sbjct: 553 FPGYYFSGDGCSR 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042390|gb|AFD33359.1| acyl-activating enzyme 15 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/567 (83%), Positives = 525/567 (92%), Gaps = 3/567 (0%)
Query: 69 MASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVL 128
MASS ++ N N+ ++T + LRHV+S+A+ PSGAGKI RLNAVILGEAL++EEND+V
Sbjct: 70 MASSPSHSRNNND---IRTINHLRHVDSMATMPSGAGKIPRLNAVILGEALATEENDLVF 126
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P+D+FS+QA VPSPQKYLEMYKRS+EDPAGFW++IAS+FYWK+KW V SENLDV KG
Sbjct: 127 PTDEFSQQAHVPSPQKYLEMYKRSIEDPAGFWSEIASQFYWKQKWDDSVYSENLDVSKGR 186
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
V IEWFKGGITNICYNCLD+N+EAGLGDK+A+YWE ND G D +LTYSQLL +VCQLANY
Sbjct: 187 VNIEWFKGGITNICYNCLDKNVEAGLGDKIALYWEGNDTGFDDSLTYSQLLHKVCQLANY 246
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
LKD+GV+KGDAV+IYLPML+ELPI MLACARIGAVHSVVFAGFS++SL+QRI+DCKPKVV
Sbjct: 247 LKDMGVQKGDAVVIYLPMLLELPITMLACARIGAVHSVVFAGFSAESLSQRIIDCKPKVV 306
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT NAVKRGPK IHLKDIVDAAL E AK+G+ +D CL YENQ AM R+ TKWQDGRDIWW
Sbjct: 307 ITCNAVKRGPKIIHLKDIVDAALVESAKTGVPIDTCLVYENQLAMKRDITKWQDGRDIWW 366
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
QDV+PKYPT+C VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKP
Sbjct: 367 QDVIPKYPTECAVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKP 426
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
SDVYWCTADCGWITGHSYVTYGP+LNGAS +VFEGAP YPDSGR WDIVDKYKVTIFYTA
Sbjct: 427 SDVYWCTADCGWITGHSYVTYGPLLNGASCIVFEGAPNYPDSGRCWDIVDKYKVTIFYTA 486
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PTLVRSLMRDG+EYVTRYSRKSLR+LGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTE
Sbjct: 487 PTLVRSLMRDGDEYVTRYSRKSLRILGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTE 546
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGGFMITPLPGAWPQKPGSATFPFFGV+PVIVDEKGVEIEGECSGYLC+K SWPGAFRTL
Sbjct: 547 TGGFMITPLPGAWPQKPGSATFPFFGVKPVIVDEKGVEIEGECSGYLCVKGSWPGAFRTL 606
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSR 635
YGD+ERYETTYFKPF GYYFTGDGCSR
Sbjct: 607 YGDYERYETTYFKPFTGYYFTGDGCSR 633
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543445|ref|XP_002512785.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223547796|gb|EEF49288.1| acetyl-CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/557 (85%), Positives = 522/557 (93%), Gaps = 2/557 (0%)
Query: 81 NSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVP 140
N TE+ LRHVES+A+ P+GAGKI RLNAVILGE+L+SEE+D+V P+DDFSR+AL+
Sbjct: 50 NHNLKTTENHLRHVESMATLPNGAGKIPRLNAVILGESLASEEDDLVFPNDDFSRRALLS 109
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQ--RVCSENLDVRKGNVKIEWFKGGI 198
SPQ+YLEMYK+S+EDPAGFW++IAS+FYWK++WGQ VCSEN DVR+G++KIEWFKGG+
Sbjct: 110 SPQQYLEMYKKSIEDPAGFWSEIASQFYWKQRWGQGQPVCSENFDVRQGSIKIEWFKGGV 169
Query: 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258
TNICYNCLDRN+E+G +K+A+YWE N+PG + +LTYSQLLQ+VCQLANYLKD GVKKGD
Sbjct: 170 TNICYNCLDRNVESGNANKIALYWEPNEPGSEDSLTYSQLLQRVCQLANYLKDKGVKKGD 229
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
AV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVIT NAVKRG
Sbjct: 230 AVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGS 289
Query: 319 KAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK 378
K I LKDIVDAAL E AK+G+SV VCLTYEN SAM RE+TKWQDGRD+WWQD VP YPT
Sbjct: 290 KVIPLKDIVDAALVESAKNGVSVGVCLTYENLSAMKRESTKWQDGRDVWWQDFVPNYPTT 349
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438
CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKPSDVYWCTADC
Sbjct: 350 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDVYWCTADC 409
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
GWITGHSYVTYGPMLNGA+ V+FEGAP YPDSGR WDIVDK++VTIFYTAPTLVRSLMRD
Sbjct: 410 GWITGHSYVTYGPMLNGATNVIFEGAPNYPDSGRCWDIVDKFRVTIFYTAPTLVRSLMRD 469
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
G+EYVTRYSRKSLR+LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP
Sbjct: 470 GDEYVTRYSRKSLRILGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 529
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC+KSSWPGAFRTLYGDHERYETT
Sbjct: 530 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCVKSSWPGAFRTLYGDHERYETT 589
Query: 619 YFKPFPGYYFTGDGCSR 635
YFKPFPGYYF+GDGCSR
Sbjct: 590 YFKPFPGYYFSGDGCSR 606
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805208|ref|XP_002870488.1| AMP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316324|gb|EFH46747.1| AMP binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/594 (79%), Positives = 532/594 (89%), Gaps = 9/594 (1%)
Query: 51 SSPPLKLIRQSGG---------GGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFP 101
SSP L ++ SG G ++ A+ + ++ + + ++LRHVES++ P
Sbjct: 7 SSPILTVVSSSGSLDPKISGSLGSRILPATQRSSPSDNLLLHRTMSSNYLRHVESMSQLP 66
Query: 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWA 161
SG GKIS+LNAV+LGE+L+SEEND++ PS +FS QALV SPQ+Y+EM+KRS++DPAGFW+
Sbjct: 67 SGTGKISQLNAVVLGESLASEENDLIFPSKEFSGQALVSSPQQYMEMHKRSMDDPAGFWS 126
Query: 162 DIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221
DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNICYNCLD+N+EAGLGDK AIY
Sbjct: 127 DIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNICYNCLDKNVEAGLGDKTAIY 186
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281
WE N+ GVDA+LTYS+LLQQVCQLANYLKD GVKKGDAV+IYLPMLMELPIAMLACARIG
Sbjct: 187 WEGNELGVDASLTYSELLQQVCQLANYLKDNGVKKGDAVVIYLPMLMELPIAMLACARIG 246
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
AVHSVVFAGFS+DSLAQRI+DCKPKV++T NAVKRGPK I+LK IVDAALD+ +K G+SV
Sbjct: 247 AVHSVVFAGFSADSLAQRIIDCKPKVILTCNAVKRGPKTINLKAIVDAALDQSSKDGVSV 306
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
+CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVEWVDAEDPLFLLYTSGSTGK
Sbjct: 307 GICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVEWVDAEDPLFLLYTSGSTGK 366
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
PKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWITGHSYVTYGPMLNGA+VVVF
Sbjct: 367 PKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWITGHSYVTYGPMLNGATVVVF 426
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
EGAP YPDSGR WDIVDKYKV+IFYTAPTLVRSLMRD ++YVTR+SRKSLRVLGSVGEPI
Sbjct: 427 EGAPNYPDSGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKYVTRHSRKSLRVLGSVGEPI 486
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581
NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD
Sbjct: 487 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 546
Query: 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
EKG+EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKPF GYYF+GDGC R
Sbjct: 547 EKGIEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKPFAGYYFSGDGCRR 600
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570289|ref|XP_003553322.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/554 (83%), Positives = 520/554 (93%)
Query: 82 SKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPS 141
+ ++T +FLRHVES+ PSGAG IS LNAVILGE+L++EE+D VLPS+DF+ QA V S
Sbjct: 56 ASNLRTNNFLRHVESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPSEDFASQANVQS 115
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P++YL+MY RS+EDPAGFW++IASEFYWK++WG +VC EN DVRKGN+KIEWFKGGITNI
Sbjct: 116 PEQYLKMYNRSIEDPAGFWSEIASEFYWKQRWGDKVCDENFDVRKGNIKIEWFKGGITNI 175
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
CYNCLDRN+EAGLGDKVAIYWE N+PG+D TLTY++LLQQVCQLANYLKDIGVKKGDAVI
Sbjct: 176 CYNCLDRNVEAGLGDKVAIYWEGNEPGLDGTLTYTELLQQVCQLANYLKDIGVKKGDAVI 235
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IYLPMLMELPIAMLACARIGAVHSVVFAGFS+++L+QRI+DCKPKVVIT NAVKRGPK I
Sbjct: 236 IYLPMLMELPIAMLACARIGAVHSVVFAGFSAEALSQRIIDCKPKVVITCNAVKRGPKPI 295
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+LKDIVDAA+++ A++G+S+D CL YEN AM R +TKW++GRDIWWQDV+P+YPT C +
Sbjct: 296 YLKDIVDAAINDSAQNGVSIDKCLVYENPLAMKRVDTKWKEGRDIWWQDVIPQYPTTCPL 355
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKPSD+YWCTADCGWI
Sbjct: 356 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWI 415
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TGHSYVTYGPMLNGASV+V+EGAP YPD+GR WDIVDKYKVTIFYTAPTLVRSLMRDG+
Sbjct: 416 TGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDA 475
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+VTRYSRKSLRVLGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTETGGFMITPLPGAW
Sbjct: 476 FVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAW 535
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
PQKPGSATFPFFGVQPVI+DEKGVEIEGEC+GYLC+K SWPGAFRTLYGDHERYETTYFK
Sbjct: 536 PQKPGSATFPFFGVQPVILDEKGVEIEGECNGYLCVKKSWPGAFRTLYGDHERYETTYFK 595
Query: 622 PFPGYYFTGDGCSR 635
PF GYYF+GDGCSR
Sbjct: 596 PFAGYYFSGDGCSR 609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560404|ref|XP_003548482.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/554 (83%), Positives = 517/554 (93%)
Query: 82 SKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPS 141
+ ++T +FLRHVES+ PSGAG IS LNAVILGE+L++EE+D VLPS+DF+ QA V S
Sbjct: 56 ASNLRTNNFLRHVESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPSEDFAGQANVQS 115
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P++YL+MYKRS+EDPAGFW++IASEFYWK++WG +VC EN DVRKGN+KIEWFKGGITNI
Sbjct: 116 PEQYLKMYKRSIEDPAGFWSEIASEFYWKQRWGDKVCDENFDVRKGNIKIEWFKGGITNI 175
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
CYNCLDRN+EAGLGDKVA+YWE N+PG+D TLTY+QLLQQVCQLANYLKDIGVKKGDAVI
Sbjct: 176 CYNCLDRNVEAGLGDKVAVYWEGNEPGLDGTLTYTQLLQQVCQLANYLKDIGVKKGDAVI 235
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IYLPMLMELPIAMLACARIGAVHSVVFAGFS+++L+QRI+DCKPKVVIT NAVKRG K I
Sbjct: 236 IYLPMLMELPIAMLACARIGAVHSVVFAGFSAEALSQRIIDCKPKVVITCNAVKRGSKPI 295
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+LKDIVDAA+++ +++G+S+D CL YEN AM R +TKW++GRDIWWQDV+ +YPT C V
Sbjct: 296 YLKDIVDAAINDSSQNGVSIDKCLVYENPLAMKRVDTKWKEGRDIWWQDVIHQYPTTCPV 355
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKP D+YWCTADCGWI
Sbjct: 356 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPHDIYWCTADCGWI 415
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TGHSYVTYGPMLNGASV+V+EGAP YPD+GR WDIVDKYKVTIFYTAPTLVRSLMRDG+
Sbjct: 416 TGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDT 475
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+VTRYSRKSLRVLGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTETGGFMITPLPGAW
Sbjct: 476 FVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAW 535
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
PQKPGSAT PFFGVQPVIVDEKGVEIEGEC+GYLC+K SWPGAFRTLYGDHERYETTYFK
Sbjct: 536 PQKPGSATLPFFGVQPVIVDEKGVEIEGECNGYLCVKKSWPGAFRTLYGDHERYETTYFK 595
Query: 622 PFPGYYFTGDGCSR 635
PF GYYF+GDGCSR
Sbjct: 596 PFSGYYFSGDGCSR 609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128712|ref|XP_002320403.1| predicted protein [Populus trichocarpa] gi|222861176|gb|EEE98718.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/551 (85%), Positives = 508/551 (92%), Gaps = 10/551 (1%)
Query: 85 MKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQK 144
M T++ LRHV S+ PSGAGK S L+AVILGEAL+SEEND++ PSDDF+RQA V SPQ+
Sbjct: 1 MATDNKLRHVTSMLELPSGAGKFSALHAVILGEALASEENDLIFPSDDFARQAHVSSPQQ 60
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204
YLEMYKRSVEDPAGFW+DIAS+FYWK+KW Q CSEN D RKGN+ I+WFKGG+TNICYN
Sbjct: 61 YLEMYKRSVEDPAGFWSDIASQFYWKKKWDQPACSENFDFRKGNISIQWFKGGLTNICYN 120
Query: 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL 264
CLDRNIE+G DK+AIYWE NDPG++ +LTYSQLL +VCQL+NYLKD+GVKKGDAV+IYL
Sbjct: 121 CLDRNIESGNADKIAIYWEGNDPGLEDSLTYSQLLDRVCQLSNYLKDVGVKKGDAVVIYL 180
Query: 265 PMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 324
PMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVIT NAVKRG KAIHLK
Sbjct: 181 PMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGAKAIHLK 240
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
DIVDAAL E AK+GISVDVCLTYEN++AM RE TKWQ+GRD+WWQD VPKYPT CEVEWV
Sbjct: 241 DIVDAALAESAKNGISVDVCLTYENENAMKREGTKWQEGRDVWWQDFVPKYPTTCEVEWV 300
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
DAEDPLFLLYTSGSTGKPKGVLHTTGGYMV++ATTFKYAFDYKPSDVYWCTADCGWITGH
Sbjct: 301 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYSATTFKYAFDYKPSDVYWCTADCGWITGH 360
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
SYVTYGPMLNGASVVVFEG PTYPD+GR WDIVDK+KVTIFYTAPTL +VT
Sbjct: 361 SYVTYGPMLNGASVVVFEGTPTYPDAGRCWDIVDKFKVTIFYTAPTL----------FVT 410
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK
Sbjct: 411 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 470
Query: 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
PGSATFPFFGVQPVIVDEKGVEIEGECSGYLC+KSSWPGAFRTLYGDHERYETTYFKPF
Sbjct: 471 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCLKSSWPGAFRTLYGDHERYETTYFKPFA 530
Query: 625 GYYFTGDGCSR 635
GYYFTGDGCSR
Sbjct: 531 GYYFTGDGCSR 541
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816169|emb|CAN68599.1| hypothetical protein VITISV_019712 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/569 (84%), Positives = 518/569 (91%), Gaps = 12/569 (2%)
Query: 67 VVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDI 126
V MA+S +++ K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+
Sbjct: 60 VTMATSPASSSP--QRKILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDL 117
Query: 127 VLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRK 186
V PS DFS QALV SP+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR
Sbjct: 118 VFPSRDFSSQALVSSPEKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRN 177
Query: 187 GNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLA 246
GN+KIEWFKGG TNICYNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLA
Sbjct: 178 GNIKIEWFKGGRTNICYNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLA 237
Query: 247 NYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPK 306
N LKD+GV+KGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPK
Sbjct: 238 NCLKDMGVRKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPK 297
Query: 307 VVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDI 366
VVITSNAVKRG K I LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDI
Sbjct: 298 VVITSNAVKRGSKVISLKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDI 357
Query: 367 WWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426
WWQDVVPKYPT C+VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDY
Sbjct: 358 WWQDVVPKYPTTCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDY 417
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
KPSDVYWCTADCGWITGHSYVTYGPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFY
Sbjct: 418 KPSDVYWCTADCGWITGHSYVTYGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFY 477
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
TAPTL YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ
Sbjct: 478 TAPTL----------YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 527
Query: 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606
TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFR
Sbjct: 528 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFR 587
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCSR 635
TLYGDH+RYETTYFK FPGYYF+GDGCSR
Sbjct: 588 TLYGDHDRYETTYFKAFPGYYFSGDGCSR 616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145323645|ref|NP_001031974.2| acetyl-CoA synthetase [Arabidopsis thaliana] gi|378548265|sp|B9DGD6.1|ACS_ARATH RecName: Full=Acetate--CoA ligase ACS, chloroplastic/glyoxysomal; AltName: Full=Acetyl-CoA synthetase; Flags: Precursor gi|222423672|dbj|BAH19803.1| AT5G36880 [Arabidopsis thaliana] gi|332006738|gb|AED94121.1| acetyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/553 (83%), Positives = 515/553 (93%), Gaps = 1/553 (0%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCSR 635
F GYYF+GDGCSR
Sbjct: 588 FAGYYFSGDGCSR 600
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 635 | ||||||
| TAIR|locus:2149104 | 743 | ACS "acetyl-CoA synthetase" [A | 0.869 | 0.742 | 0.835 | 6e-270 | |
| UNIPROTKB|Q5QPH3 | 714 | ACSS2 "Acetyl-coenzyme A synth | 0.462 | 0.411 | 0.656 | 1.5e-177 | |
| UNIPROTKB|Q9NR19 | 701 | ACSS2 "Acetyl-coenzyme A synth | 0.434 | 0.393 | 0.688 | 4e-177 | |
| MGI|MGI:1890410 | 701 | Acss2 "acyl-CoA synthetase sho | 0.434 | 0.393 | 0.684 | 2e-175 | |
| UNIPROTKB|A7YWF1 | 701 | ACSS2 "Uncharacterized protein | 0.434 | 0.393 | 0.692 | 1.7e-174 | |
| RGD|1305489 | 701 | Acss2 "acyl-CoA synthetase sho | 0.434 | 0.393 | 0.681 | 1.7e-174 | |
| UNIPROTKB|E2R0C6 | 714 | ACSS2 "Uncharacterized protein | 0.434 | 0.386 | 0.684 | 2e-173 | |
| UNIPROTKB|J9P7N4 | 701 | ACSS2 "Uncharacterized protein | 0.434 | 0.393 | 0.684 | 2e-173 | |
| UNIPROTKB|F1S4Y0 | 701 | ACSS2 "Uncharacterized protein | 0.434 | 0.393 | 0.673 | 2.6e-171 | |
| ZFIN|ZDB-GENE-040718-388 | 698 | acss2 "acyl-CoA synthetase sho | 0.496 | 0.451 | 0.577 | 2.1e-169 |
| TAIR|locus:2149104 ACS "acetyl-CoA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2596 (918.9 bits), Expect = 6.0e-270, P = 6.0e-270
Identities = 462/553 (83%), Positives = 515/553 (93%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCSR 635
F GYYF+GDGCSR
Sbjct: 588 FAGYYFSGDGCSR 600
|
|
| UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 193/294 (65%), Positives = 227/294 (77%)
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
DV + +S + W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGK
Sbjct: 276 DVQGKLKEKSKRVQPQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGK 335
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
PKGV+HT GGYM++ ATTFKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+F
Sbjct: 336 PKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLF 395
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
EG PTYPD R W IVDKYKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPI
Sbjct: 396 EGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPI 455
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581
NP AW W+ VVG RCPI DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++
Sbjct: 456 NPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILN 515
Query: 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
E G E+EGE GYL K WPG RT+YG+HER+ETTYFK FPGYY TGDGC R
Sbjct: 516 ESGEELEGEAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQR 569
|
|
| UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 4.0e-177, Sum P(2) = 4.0e-177
Identities = 190/276 (68%), Positives = 221/276 (80%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W IVDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVNRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+HER+ETTYFK FPGYY TGDGC R
Sbjct: 521 PWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQR 556
|
|
| MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 2.0e-175, Sum P(2) = 2.0e-175
Identities = 189/276 (68%), Positives = 223/276 (80%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQQAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTIGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD GR W IVDK
Sbjct: 341 FKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+H R+ETTYFK FPGYY TGDGC R
Sbjct: 521 PWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRR 556
|
|
| UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 1.7e-174, Sum P(2) = 1.7e-174
Identities = 191/276 (69%), Positives = 223/276 (80%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ K +CE EW DAEDPLF+LYTSGSTGKPKGVLHT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQKAGDECEPEWCDAEDPLFILYTSGSTGKPKGVLHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IV+K
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVEK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGAIPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+HER+ETTYFK FPGYY TGDGC R
Sbjct: 521 PWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCRR 556
|
|
| RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 1.7e-174, Sum P(2) = 1.7e-174
Identities = 188/276 (68%), Positives = 222/276 (80%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ + + E EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQQAGDEFEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD GR W IVDK
Sbjct: 341 FKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+H R+ETTYFK FPGYY TGDGC R
Sbjct: 521 PWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRR 556
|
|
| UNIPROTKB|E2R0C6 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
Identities = 189/276 (68%), Positives = 220/276 (79%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 294 WNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 353
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IVDK
Sbjct: 354 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVDK 413
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VTR+SR SL+VLG+VGEPINP AW W+ VVG RC
Sbjct: 414 YKVTKFYTAPTAIRLLMKFGDEPVTRHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCS 473
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 474 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 533
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+HER+E TYFK FPGYY TGDGC R
Sbjct: 534 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGCRR 569
|
|
| UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
Identities = 189/276 (68%), Positives = 220/276 (79%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IVDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VTR+SR SL+VLG+VGEPINP AW W+ VVG RC
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTRHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCS 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+HER+E TYFK FPGYY TGDGC R
Sbjct: 521 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGCRR 556
|
|
| UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1090 (388.8 bits), Expect = 2.6e-171, Sum P(2) = 2.6e-171
Identities = 186/276 (67%), Positives = 219/276 (79%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D WW +++ +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNNGVDFWWHELMQDAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PT+PD R W +VDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTHPDVSRLWSVVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+ VT++SR SL+VLG+VGEPINP AW W+ VVGD+RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKSGDGPVTKHSRASLKVLGTVGEPINPEAWLWYHRVVGDNRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATRTKPGSATFPFFGVAPAILNEAGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
WPG RT+YG+HER+E TYFK FPGYY TGDGC R
Sbjct: 521 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGCRR 556
|
|
| ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 2.1e-169, Sum P(2) = 2.1e-169
Identities = 189/327 (57%), Positives = 230/327 (70%)
Query: 319 KAIHLKDIVDAALDECAKSGISVDV---C--LTYENQSAMTRE-----NTKWQDGRDIWW 368
K I LK + DE + +S C L E Q R+ W D+ W
Sbjct: 229 KCIMLKHLTKE--DEASSGSLSPPAKRACPDLQQEKQKERVRKVRPPPQVPWNPEVDMCW 286
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
++ +CE W D+EDPLF+LYTSGSTGKPKGVLHT GYM++TA+TFK FDY
Sbjct: 287 HSLIGGASEECEPVWCDSEDPLFILYTSGSTGKPKGVLHTVSGYMLYTASTFKMVFDYHS 346
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
DVYWCTAD GWITGHSY+TYGP+ NGA+ V+FEG PTYPD R W+IVDKY V+ FYTA
Sbjct: 347 DDVYWCTADIGWITGHSYITYGPLANGATSVLFEGLPTYPDVSRMWEIVDKYHVSKFYTA 406
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R LM+ G++ V +Y R SL++LG+VGEPINP AW+W++NVVG+ RCP+ DT+WQTE
Sbjct: 407 PTAIRLLMKYGSDPVHKYKRTSLKILGTVGEPINPEAWQWYYNVVGEKRCPVVDTFWQTE 466
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGG ++TPLP A P KPGSATFPFFGV P I++E G E+EG GYL K WPG RT+
Sbjct: 467 TGGHVMTPLPAATPMKPGSATFPFFGVVPAILNESGEELEGPSEGYLVFKQPWPGVMRTV 526
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSR 635
YG+H R+ETTYFK FPGYY TGDGC R
Sbjct: 527 YGNHLRFETTYFKKFPGYYVTGDGCRR 553
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8YJ48 | ACSA_BRUME | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| B7KPN8 | ACSA_METC4 | 6, ., 2, ., 1, ., 1 | 0.5265 | 0.7858 | 0.7653 | yes | no |
| A1UR36 | ACSA_BARBK | 6, ., 2, ., 1, ., 1 | 0.5238 | 0.7779 | 0.7576 | yes | no |
| Q056J9 | ACSA_LEPBL | 6, ., 2, ., 1, ., 1 | 0.5505 | 0.7858 | 0.7629 | yes | no |
| Q88DW6 | ACSA2_PSEPK | 6, ., 2, ., 1, ., 1 | 0.536 | 0.7653 | 0.7546 | yes | no |
| Q07VK4 | ACSA_RHOP5 | 6, ., 2, ., 1, ., 1 | 0.5515 | 0.7732 | 0.7577 | yes | no |
| Q57B76 | ACSA_BRUAB | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| B0SRX5 | ACSA_LEPBP | 6, ., 2, ., 1, ., 1 | 0.5330 | 0.7858 | 0.7629 | yes | no |
| A7HSR8 | ACSA_PARL1 | 6, ., 2, ., 1, ., 1 | 0.5456 | 0.7732 | 0.7588 | yes | no |
| C0RF62 | ACSA_BRUMB | 6, ., 2, ., 1, ., 1 | 0.5422 | 0.7826 | 0.7634 | yes | no |
| Q8D1G8 | ACSA_YERPE | 6, ., 2, ., 1, ., 1 | 0.5347 | 0.7748 | 0.7546 | yes | no |
| A4YK73 | ACSA_BRASO | 6, ., 2, ., 1, ., 1 | 0.5436 | 0.7732 | 0.7553 | yes | no |
| A9IYZ3 | ACSA_BART1 | 6, ., 2, ., 1, ., 1 | 0.5335 | 0.7811 | 0.7666 | yes | no |
| B9DGD6 | ACS_ARATH | 6, ., 2, ., 1, ., 1 | 0.8354 | 0.8692 | 0.7429 | yes | no |
| Q1CE37 | ACSA_YERPN | 6, ., 2, ., 1, ., 1 | 0.5347 | 0.7748 | 0.7546 | yes | no |
| Q9QXG4 | ACSA_MOUSE | 6, ., 2, ., 1, ., 1 | 0.5779 | 0.7984 | 0.7232 | yes | no |
| B8FIN2 | ACSA_DESAA | 6, ., 2, ., 1, ., 1 | 0.5312 | 0.7842 | 0.7708 | yes | no |
| Q9VP61 | ACSA_DROME | 6, ., 2, ., 1, ., 1 | 0.5421 | 0.8078 | 0.7656 | yes | no |
| A7IFD4 | ACSA_XANP2 | 6, ., 2, ., 1, ., 1 | 0.5458 | 0.7559 | 0.7373 | yes | no |
| A4TS06 | ACSA_YERPP | 6, ., 2, ., 1, ., 1 | 0.5347 | 0.7748 | 0.7546 | yes | no |
| A0LG91 | ACSA_SYNFM | 6, ., 2, ., 1, ., 1 | 0.5638 | 0.7559 | 0.7384 | yes | no |
| A1JIK3 | ACSA_YERE8 | 6, ., 2, ., 1, ., 1 | 0.5288 | 0.7748 | 0.7546 | yes | no |
| Q6LLZ1 | ACSA_PHOPR | 6, ., 2, ., 1, ., 1 | 0.5395 | 0.7606 | 0.7442 | yes | no |
| Q8FYQ3 | ACSA_BRUSU | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| A0L576 | ACSA_MAGSM | 6, ., 2, ., 1, ., 1 | 0.5362 | 0.7779 | 0.7670 | yes | no |
| A7FNG1 | ACSA_YERP3 | 6, ., 2, ., 1, ., 1 | 0.5308 | 0.7748 | 0.7546 | yes | no |
| Q72LY9 | ACSA_LEPIC | 6, ., 2, ., 1, ., 1 | 0.5430 | 0.7968 | 0.7655 | yes | no |
| Q2G512 | ACSA_NOVAD | 6, ., 2, ., 1, ., 1 | 0.5326 | 0.7732 | 0.7565 | yes | no |
| A9WWT6 | ACSA_BRUSI | 6, ., 2, ., 1, ., 1 | 0.5422 | 0.7826 | 0.7634 | yes | no |
| Q89WV5 | ACSA_BRAJA | 6, ., 2, ., 1, ., 1 | 0.5508 | 0.7559 | 0.7407 | yes | no |
| A1WY97 | ACSA_HALHL | 6, ., 2, ., 1, ., 1 | 0.5384 | 0.7543 | 0.7426 | yes | no |
| Q9KV59 | ACSA_VIBCH | 6, ., 2, ., 1, ., 1 | 0.5397 | 0.7574 | 0.7411 | yes | no |
| Q2YLH5 | ACSA_BRUA2 | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| B0S8X7 | ACSA_LEPBA | 6, ., 2, ., 1, ., 1 | 0.5330 | 0.7858 | 0.7629 | yes | no |
| Q66FM8 | ACSA_YERPS | 6, ., 2, ., 1, ., 1 | 0.5308 | 0.7748 | 0.7546 | yes | no |
| Q04P35 | ACSA_LEPBJ | 6, ., 2, ., 1, ., 1 | 0.5505 | 0.7858 | 0.7629 | yes | no |
| Q0AAW0 | ACSA_ALHEH | 6, ., 2, ., 1, ., 1 | 0.5313 | 0.7795 | 0.7674 | yes | no |
| Q8EYG2 | ACSA_LEPIN | 6, ., 2, ., 1, ., 1 | 0.5430 | 0.7968 | 0.7655 | yes | no |
| A9M849 | ACSA_BRUC2 | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| B1ZB59 | ACSA_METPB | 6, ., 2, ., 1, ., 1 | 0.5304 | 0.7858 | 0.7688 | yes | no |
| Q6FYL4 | ACSA_BARQU | 6, ., 2, ., 1, ., 1 | 0.5337 | 0.7779 | 0.7576 | yes | no |
| Q6MNF1 | ACSA_BDEBA | 6, ., 2, ., 1, ., 1 | 0.5456 | 0.7543 | 0.7426 | yes | no |
| Q9HV66 | ACSA2_PSEAE | 6, ., 2, ., 1, ., 1 | 0.5490 | 0.7795 | 0.7674 | yes | no |
| Q1C0N0 | ACSA_YERPA | 6, ., 2, ., 1, ., 1 | 0.5347 | 0.7748 | 0.7546 | yes | no |
| Q6G1W0 | ACSA_BARHE | 6, ., 2, ., 1, ., 1 | 0.5346 | 0.7795 | 0.7592 | yes | no |
| B2S7N5 | ACSA_BRUA1 | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| A5VSF3 | ACSA_BRUO2 | 6, ., 2, ., 1, ., 1 | 0.5442 | 0.7826 | 0.7634 | yes | no |
| Q9NR19 | ACSA_HUMAN | 6, ., 2, ., 1, ., 1 | 0.5912 | 0.7984 | 0.7232 | yes | no |
| A6WXV8 | ACSA_OCHA4 | 6, ., 2, ., 1, ., 1 | 0.5600 | 0.7590 | 0.7403 | yes | no |
| Q21LV0 | ACSA_SACD2 | 6, ., 2, ., 1, ., 1 | 0.5566 | 0.7543 | 0.7426 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 635 | |||
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 0.0 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.0 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.0 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.0 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 0.0 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-162 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 1e-142 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-117 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-114 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-104 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-100 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-74 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 7e-63 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-60 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-59 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-53 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 2e-53 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-52 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 5e-43 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 6e-43 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-38 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-34 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-33 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 8e-32 | |
| pfam11930 | 82 | pfam11930, DUF3448, Domain of unknown function (DU | 3e-31 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-28 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 2e-27 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-27 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 3e-27 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-27 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 7e-27 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 3e-26 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 8e-26 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 9e-26 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-25 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 5e-25 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-23 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 9e-22 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-20 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-20 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-19 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 6e-19 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 5e-18 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-18 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-17 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-16 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-16 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 8e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-15 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 2e-15 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-15 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-15 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 3e-15 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 3e-15 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-15 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-14 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-14 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 4e-14 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-13 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-13 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-13 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 3e-13 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-13 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 7e-13 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-13 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 9e-13 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-12 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-12 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-12 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-12 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 3e-12 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 3e-12 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-12 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 4e-12 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 5e-12 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 8e-12 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-11 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-11 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-11 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-11 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-11 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-11 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-11 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-11 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-11 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-11 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 4e-11 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-11 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 8e-11 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-10 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-10 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 3e-10 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 7e-10 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 7e-10 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 7e-10 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 8e-10 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 9e-10 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 1e-09 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-09 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-09 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 3e-09 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 8e-09 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-08 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 1e-08 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-08 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 4e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-08 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 4e-08 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 4e-08 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 5e-08 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 5e-08 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 6e-08 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 7e-08 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 7e-08 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-07 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-07 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 1e-07 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-07 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-07 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 2e-07 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-07 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 3e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 4e-07 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-07 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 7e-07 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 7e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 8e-07 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-06 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-06 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-06 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-06 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 2e-06 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-06 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 4e-06 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 4e-06 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 8e-06 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 1e-05 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-05 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-05 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 3e-05 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 4e-05 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 4e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 5e-05 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 6e-05 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 7e-05 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 2e-04 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 3e-04 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 4e-04 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 4e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-04 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 5e-04 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 9e-04 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 0.001 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 0.001 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 0.002 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 0.002 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 0.003 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.003 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 1115 bits (2885), Expect = 0.0
Identities = 460/523 (87%), Positives = 497/523 (95%), Gaps = 1/523 (0%)
Query: 114 ILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKW 173
+LGE+L+SEEND+V PS DFS QALV SPQ+Y+EMYKRSV+DPAGFW+DIAS+FYWK+KW
Sbjct: 1 VLGESLASEENDLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKW 60
Query: 174 -GQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDAT 232
G VCSENLDVRKG + IEWFKGG TNICYNCLDRN+EAG GDK+AIYWE N+PG DA+
Sbjct: 61 EGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDAS 120
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTYS+LL +VCQLANYLKD+GVKKGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFS
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
++SLAQRI+DCKPKVVIT NAVKRGPK I+LKDIVDAALDE AK+G+SV +CLTYENQ A
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
M RE+TKWQ+GRD+WWQDVVP YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY
Sbjct: 241 MKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 300
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
MV+TATTFKYAFDYKP+DVYWCTADCGWITGHSYVTYGPMLNGA+V+VFEGAP YPDSGR
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGR 360
Query: 473 SWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532
WDIVDKYKVTIFYTAPTLVRSLMRDG+EYVTR+SRKSLRVLGSVGEPINPSAWRWFFNV
Sbjct: 361 CWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNV 420
Query: 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG EIEGECS
Sbjct: 421 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS 480
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
GYLC+K SWPGAFRTLYGDHERYETTYFKPF GYYF+GDGCSR
Sbjct: 481 GYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSR 523
|
Length = 666 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 884 bits (2287), Expect = 0.0
Identities = 293/487 (60%), Positives = 353/487 (72%), Gaps = 14/487 (2%)
Query: 149 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208
YK S+EDP FWA+ A E W + W + LD +WF GG N YNCLDR
Sbjct: 1 YKESIEDPEEFWAEQAEELDWFKPW-----DKVLD-WSNPPFAKWFVGGKLNASYNCLDR 54
Query: 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 268
+++AG G+KVAI WE T+TY +L ++VC+ AN LK +GVKKGD V IY+PM+
Sbjct: 55 HLKAGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIP 114
Query: 269 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 328
ELPIAMLACARIGA+HSVVFAGFS+++LA RI D K K++IT++ RG K I LK+IVD
Sbjct: 115 ELPIAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVD 174
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388
AL++C SV+ + + T +GRD+WW D++ K CE E +DAED
Sbjct: 175 EALEKCP----SVEKVIVVKR----TGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAED 226
Query: 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448
PLF+LYTSGSTGKPKGV+HTTGGY+V+ ATTFKY FD P DVYWCTAD GWITGHSY+
Sbjct: 227 PLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIV 286
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
YGP+ NGA+ V++EGAP YPD GR W+IV+KYKVTIFYTAPT +R LMR G+E+ ++
Sbjct: 287 YGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDL 346
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568
SLR+LGSVGEPINP AW W++ V+G RCPI DTWWQTETGG MITPLPGA P KPGSA
Sbjct: 347 SSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGATPLKPGSA 406
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
T PF GV+P IVDE+G E+EG GYL IK WPG RT+YGDHERY TYF FPGYYF
Sbjct: 407 TRPFPGVEPAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYF 466
Query: 629 TGDGCSR 635
TGDG R
Sbjct: 467 TGDGARR 473
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 868 bits (2246), Expect = 0.0
Identities = 284/507 (56%), Positives = 355/507 (70%), Gaps = 17/507 (3%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P +F+ AL+ ++Y +Y+ SVEDP GFWA+ A W + + LD
Sbjct: 4 PPAEFAANALI-DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPF-----DTVLD--WNA 55
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
I+WF+ G N+ YNCLDR+++ GDKVAI WE +DPG +TY +L ++VC+ AN
Sbjct: 56 PFIKWFEDGELNVSYNCLDRHLKTR-GDKVAIIWEGDDPGDSRKITYRELHREVCRFANA 114
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
LK +GVKKGD V IY+PM+ E +AMLACARIGAVHSVVF GFS+++LA RI+D K+V
Sbjct: 115 LKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLV 174
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT++ RG K I LK VD AL C SV+ + T + W +GRD+WW
Sbjct: 175 ITADEGVRGGKPIPLKANVDEALANCP----SVEKVIVVRR----TGGDVDWVEGRDLWW 226
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
++V +CE E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ A T KY FDYK
Sbjct: 227 HELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKD 286
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
DVYWCTAD GW+TGHSY+ YGP+ NGA+ ++FEG P YPD GR W+++DK+KVTIFYTA
Sbjct: 287 GDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTA 346
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R+LM++G+E+ +Y SLR+LGSVGEPINP AW W++ VVG RCPI DTWWQTE
Sbjct: 347 PTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTE 406
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGG MITPLPGA P KPGSAT P G+QP +VDE+G +EG G L IK WPG RT+
Sbjct: 407 TGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTI 466
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSR 635
YGDHER+ TYF F G YFTGDG R
Sbjct: 467 YGDHERFVKTYFSTFKGMYFTGDGARR 493
|
Length = 637 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 802 bits (2073), Expect = 0.0
Identities = 285/497 (57%), Positives = 358/497 (72%), Gaps = 16/497 (3%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGIT 199
+ ++Y E+Y+ S+EDP FWA +A E W + + +V + +WF GG
Sbjct: 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPF-TKVLDWSFPP-----FYKWFVGGEL 56
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N+ YNC+DR++EA DKVAI WE ++PG +TY +L ++VC+ AN LK +GVKKGD
Sbjct: 57 NVSYNCVDRHLEA-RPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPK 319
V IY+PM+ E IAMLACARIGA+HSVVF GFS+++LA RI D K+VIT++ RG K
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 320 AIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
I LK IVD AL++C +SV+ L T W +GRD+WW D++ K C
Sbjct: 176 VIPLKAIVDEALEKC---PVSVEHVLVVRR----TGNPVPWVEGRDVWWHDLMAKASAYC 228
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
E E +D+EDPLF+LYTSGSTGKPKGVLHTTGGY+++ A T KY FD K D++WCTAD G
Sbjct: 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
WITGHSY+ YGP+ NGA+ V+FEG PTYPD GR W+I++K+KVTIFYTAPT +R+LMR G
Sbjct: 289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLG 348
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
+E+V ++ SLR+LGSVGEPINP AW W++ VVG RCPI DTWWQTETGG MITPLPG
Sbjct: 349 DEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG 408
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEG-ECSGYLCIKSSWPGAFRTLYGDHERYETT 618
A P KPGSAT PFFG++P +VDE+G +EG GYL IK WPG RT+YGDHER+ T
Sbjct: 409 ATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDT 468
Query: 619 YFKPFPGYYFTGDGCSR 635
YF PFPGYYFTGDG R
Sbjct: 469 YFSPFPGYYFTGDGARR 485
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 543 bits (1400), Expect = 0.0
Identities = 180/444 (40%), Positives = 246/444 (55%), Gaps = 38/444 (8%)
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+WF+GG N+ N LDR++EA D AI ++ + G+ LTY L ++V +LAN LKD
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFD-GEDGLFRELTYGDLRREVARLANALKD 59
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
+G KGD V IY+P E IA+LA ARIGA+ +VV G S++++A RI D PKV+I
Sbjct: 60 LGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD 119
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ R K I L + DA L V V +W+ +
Sbjct: 120 DGTFRNGKEIALLEDADAVLSSV------VVV------------------PRLGLWYDEA 155
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
V K K E E + A+DPLFLLYTSG+TGKPKG++H+ GGY+V T K+ D P D
Sbjct: 156 VEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDR 215
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
+W ++D GWI G Y + P+ +GA+ V+++G P Y R W+ ++KYKVTIF T+PT
Sbjct: 216 FWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTF 274
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R LM+ G Y SLRVLGS GEP+NP A+ WF++ +G I D + QTETG
Sbjct: 275 LRRLMKLGL--GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGM 329
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
I P P K GS+ P G VD++G + G L ++ WPG T + D
Sbjct: 330 GFIAGRP---PVKNGSSGLPLPGYAVRRVDDEGNPVPPG-VGELVVRLPWPGMALTYWND 385
Query: 612 HERYETTYFKPFPGYYFTGDGCSR 635
ERY+ YF +Y TGD R
Sbjct: 386 PERYKEAYFG---RWYRTGDWAER 406
|
Length = 528 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 477 bits (1230), Expect = e-162
Identities = 190/485 (39%), Positives = 275/485 (56%), Gaps = 23/485 (4%)
Query: 154 EDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAG 213
++P FWA+ A+ W + W + + + N + WF GG N+CYN +DR+IE G
Sbjct: 1 KEPEAFWAEQANLIDWYKPWEKVLDNSNPPFTR------WFVGGRLNLCYNAVDRHIEDG 54
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
GD++A+ +++ G T TY++L +V +LA L+ +GV KGD VIIY+PM+ E IA
Sbjct: 55 RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
MLACARIGA+HSVVF GF+S LA RI D KPK+++T++ + + K ++D AL
Sbjct: 115 MLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKAL-- 172
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
S L + GRD+ W +++ K + V++ DPL++L
Sbjct: 173 -ELSQHKPHKVLILNRGQVPAPL----KPGRDLDWAELMAKAR-PVDCVPVESTDPLYIL 226
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
YTSG+TGKPKGV+ TGGY V + + + KP DV+W +D GW+ GHSY+ YGP+L
Sbjct: 227 YTSGTTGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLL 286
Query: 454 NGASVVVFEGAPTY-PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD--GNEYVTRYSRKS 510
+GA+ V++EG P PD+G W ++++Y V +TAPT +R++ + EY+ +Y S
Sbjct: 287 HGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSS 346
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG--AWPQKPGSA 568
LR L GE ++ W +G P+ D WWQTETG + G P KPGS
Sbjct: 347 LRALFLAGERLDSPTLEWIEKTLG---VPVIDHWWQTETGWPITANCVGLELLPIKPGSP 403
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETTYFKPFPGYY 627
P G ++DE G E+ G + IK PG TL+GD ER++ Y FPGYY
Sbjct: 404 GKPVPGYDVQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYY 463
Query: 628 FTGDG 632
TGD
Sbjct: 464 DTGDS 468
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-142
Identities = 178/507 (35%), Positives = 275/507 (54%), Gaps = 39/507 (7%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCS-ENLDVRKGNVKIEWFKGGITNI 201
Y E Y+RS++DP FWA+ A W+ + +V N + WF GG TN+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPF-TQVLDYSNPPFAR------WFVGGRTNL 54
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
C+N +DR++ +++A+ + + + T T+ QL +V ++A L+ +GV++GD V+
Sbjct: 55 CHNAVDRHLAKR-PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVL 113
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IY+PM+ E AMLACARIGA+HSVVF GF+S SLA RI D KP ++++++A RG K +
Sbjct: 114 IYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVV 173
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTKCE 380
K ++D A+ V L + A GRD+ + + ++ +
Sbjct: 174 PYKPLLDEAIALAQHKPRHV---LLVDRGLAPMA----RVAGRDVDYATLRAQHLGARVP 226
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VEW+++ +P ++LYTSG+TGKPKGV TGGY V AT+ F K + ++C +D GW
Sbjct: 227 VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGW 286
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+ GHSY+ Y P+L G + +++EG PT PD+G W IV+KYKV ++APT +R L +
Sbjct: 287 VVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDP 346
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG- 559
+ ++ SLR L GEP++ W +G P+ D +WQTETG ++ G
Sbjct: 347 ALLRKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVIDNYWQTETGWPILAIARGV 403
Query: 560 -AWPQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYE 616
P + GS P +G +++E G G L I+ PG +T++GD +R+
Sbjct: 404 EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFV 463
Query: 617 TTYFKPFP---------------GYYF 628
TY+ F GYYF
Sbjct: 464 KTYWSLFGRQVYSTFDWGIRDADGYYF 490
|
Length = 629 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 361 bits (928), Expect = e-117
Identities = 177/486 (36%), Positives = 270/486 (55%), Gaps = 22/486 (4%)
Query: 144 KYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203
+Y E Y+RS+E P FWA+ A W+ + + N + WF GG TN+C+
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPPQRILDYSNPPFAR------WFAGGRTNLCH 55
Query: 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIY 263
N LDR+++ G+++A+ +++ G + TLTY QL ++V A+ L+ +GV +GD V+IY
Sbjct: 56 NALDRHLDER-GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY 114
Query: 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+PM+ E AMLACARIGA+HSVVF GF+S SLA RI D PK++++++A RG K I
Sbjct: 115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPY 174
Query: 324 KDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVE 382
K ++DAA+ E V L + M GRD+ + + ++ + VE
Sbjct: 175 KPLLDAAIAEAQHP--PPHVLLVDRGLAPMRL-----IPGRDVDYAALRTQHEDAQVPVE 227
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
W+++ +P ++LYTSG+TGKPKGV GGY V A + F + V + +D GW+
Sbjct: 228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVV 287
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSY+ Y P+L GA+ V++EG PT PD G W IV++Y V ++APT +R L + +
Sbjct: 288 GHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW 347
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ ++ SL L GEP++ W + +G P+ D +WQTETG ++ +PG
Sbjct: 348 LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGK---PVIDNYWQTETGWPVLAIMPGLDL 404
Query: 563 QKP--GSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETT 618
+ GS P +G ++DE G G L + PG T++GD R+ T
Sbjct: 405 KPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT 464
Query: 619 YFKPFP 624
Y+ F
Sbjct: 465 YWSHFK 470
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 351 bits (904), Expect = e-114
Identities = 170/454 (37%), Positives = 237/454 (52%), Gaps = 49/454 (10%)
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
+V K + W + G NI Y +DR+ + G DKVA+ + D TY +L +
Sbjct: 29 EVEK---EFSWLETGKVNIAYEAIDRHADGGRKDKVALRYL--DASRKEKYTYKELKELS 83
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
+ AN LK++GV+KGD V I++P + EL A+L + GA+ +F F +++ R+ D
Sbjct: 84 NKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLED 143
Query: 303 CKPKVVITSNAV-KRGPKA--IHLKDI--VDAALDECAKSGISVDVCLTYENQSAMTREN 357
+ KV+IT+ A+ +R P LK + V ++E T + + M +
Sbjct: 144 SEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPG---------TLDFNALMEQA- 193
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+ ++EW D ED L YTSGSTGKPKGVLH + H
Sbjct: 194 ------------------SDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ 235
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
T KY D DVYWCTAD GW+TG SY + P LNGA+ V+ G R + I+
Sbjct: 236 TG-KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF---SPERWYRIL 291
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ YKVT++YTAPT +R LM G++ V +Y SLR + SVGEP+NP RW V G
Sbjct: 292 EDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG--- 348
Query: 538 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCI 597
PI D WW TETGG MI P A KPGS P G++ IVD++G E+ G L I
Sbjct: 349 LPIHDNWWMTETGGIMIANYP-AMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAI 407
Query: 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
K WP R ++ + E+YE +YF +Y +GD
Sbjct: 408 KKGWPSMMRGIWNNPEKYE-SYFA--GDWYVSGD 438
|
Length = 570 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-104
Identities = 114/398 (28%), Positives = 176/398 (44%), Gaps = 33/398 (8%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY +L ++ +LA L+ +GV GD V I LP E +A+LA + GA + + +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ LA + D + KV+IT + + + LK +V AL
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV------------------- 101
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+G D+ +++ + VD +D +++YTSG+TGKPKGV+ T +
Sbjct: 102 ----GDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLL 157
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
A + V G + +GP+L G ++V+ P R
Sbjct: 158 ALAAGLAERFGLTPGDRVLLLLP--LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPA--RL 213
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
D+++KYKVT+ Y PTL+R L++ E +Y SLR++ S GEP+ P R
Sbjct: 214 LDLIEKYKVTVLYGVPTLLRLLLKAPEE--KKYDLSSLRLVLSGGEPLPPELLRRLRERF 271
Query: 534 GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
G P+ + + TET LPG KPGS P GV+ ++DE+G + G
Sbjct: 272 G--GVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVG 329
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
LCI+ PG R D E + + G Y TGD
Sbjct: 330 ELCIRG--PGVARGYLNDPELTAERFVEDGWGMYRTGD 365
|
Length = 412 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-100
Identities = 140/404 (34%), Positives = 197/404 (48%), Gaps = 65/404 (16%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
G T TYS+L ++V +LA+ L +G+ KGD V IY+PM+ E +A+LA A+IGA+ +
Sbjct: 3 GSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
F+GF DA + V +
Sbjct: 63 FSGFG----------------------------------PDAVATRLQDAEAKVLIT--- 85
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
R G+ + +D DP ++YTSG+TGKPKG +H
Sbjct: 86 --ADGFLRR------GKRVDLKD-----------------DPAMIIYTSGTTGKPKGTVH 120
Query: 408 TTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
T G+ V A + FD KP D D GW+ G ++ G +L GA++V++EGAP Y
Sbjct: 121 THAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIVLYEGAPDY 179
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR 527
PD R W IV+++KVT +PTL+R+L G+ V + SLRVLGS GEP +P +W
Sbjct: 180 PDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWL 239
Query: 528 WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI 587
W F VG R PI + TE G ++ +P P KP S P G+ +VDE G +
Sbjct: 240 WLFERVGGGRAPIINYSGGTEISGGILGNVPIR-PIKPCSFNGPSPGMDADVVDEDGRPV 298
Query: 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
GE G L +++ WPG R + D ERY TY+ FPG + GD
Sbjct: 299 RGE-VGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVHGD 341
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 245 bits (626), Expect = 2e-74
Identities = 117/252 (46%), Positives = 146/252 (57%), Gaps = 17/252 (6%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
D EDP L +TSG+TGKPKGVLH + H AT +Y D +P DVYWCTAD GW+TG
Sbjct: 87 DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATA-RYVLDLRPDDVYWCTADPGWVTGT 145
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
SY P+LNG ++VV EG D+ R + I+++ KVT++YTAPT +R LMR G E
Sbjct: 146 SYGIIAPLLNGVTLVVDEGE---FDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAA 202
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
RY SLR + SVGEP+NP W V+G PI DTWWQTETG MI PG P K
Sbjct: 203 RYDLSSLRHIASVGEPLNPEVVVWGEKVLG---MPIHDTWWQTETGAIMIANYPGI-PVK 258
Query: 565 PGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
PGS P G++ +++ G + G L +K WP FR G+ ERY
Sbjct: 259 PGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYA---- 314
Query: 621 KPFP-GYYFTGD 631
F G+Y TGD
Sbjct: 315 SSFVDGWYLTGD 326
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 7e-63
Identities = 149/524 (28%), Positives = 248/524 (47%), Gaps = 66/524 (12%)
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P Y + +P FW ++A ++ +K +V S + + +WFKGG N
Sbjct: 7 PFDYENDSNYANSNPESFWDEVAKKYVHWDKMYDKVYSGD------EIYPDWFKGGELNT 60
Query: 202 CYNCLDRNIEAGLG-DKVAIYWEANDPGVDAT--LTYSQLLQQVCQLANYLKDIGVKKGD 258
CYN LD +++ L D+ A+ +E P + T LTY QL ++VC+ + L ++ + K D
Sbjct: 61 CYNVLDIHVKNPLKRDQDALIYEC--PYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKND 118
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN------ 312
V+IY+ +E IAML+CARIGA H V+F G+S SL RI PK++IT+N
Sbjct: 119 NVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILND 178
Query: 313 -AVKRGP---KAIHLK-------------DIVDAALDECAKSGISVDVCLTYENQSAMTR 355
+ P +AI L DI + + ++ ++ L++ ++ +
Sbjct: 179 EIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIK 238
Query: 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
EN + P Y E V++ PL++LYTSG+TG K V+ + G ++V
Sbjct: 239 ENNQ------------SPFY----EYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVG 282
Query: 416 TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS-- 473
++ + V + + GW++ H ++ YG + G + V+FEG
Sbjct: 283 LKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFL-YGSLSLGNTFVMFEGGIIKNKHIEDDL 341
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMR---DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530
W+ ++K+KVT T P +R L++ + ++Y +L+ + GE I S +
Sbjct: 342 WNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIE 401
Query: 531 NVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSAT-FPFFGVQPVIVDEKGVEIE 588
N + + S + QTE G IT L P +AT P ++P I+ E G E+
Sbjct: 402 NKL---KIKSSRGYGQTEIG---ITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELN 455
Query: 589 GECSGYLCIKSSWPGAF-RTLYGDHERYETTYFKPFPGYYFTGD 631
G + K P +F T Y + E+++ + K FPGYY +GD
Sbjct: 456 VNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK-FPGYYNSGD 498
|
Length = 647 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 1e-60
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 14/244 (5%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447
DP F+LYTSG+TGKPKGV+ + + + + A DV + G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQ-AIGLTEGDVLLSVLPLFHVVGGGSG 59
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYS 507
G +L G +VV++EG P P S +++++Y+VT+ + PTL +L + + S
Sbjct: 60 LLGALLAGGTVVLYEGFPF-PLSF--LELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLS 116
Query: 508 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
SLR+L S GEP++P F G PI + + TET + P + +KPG+
Sbjct: 117 --SLRLLISGGEPLSPELLERFEERPG---APILEGYGLTETSVV-TSTNPDSELKKPGT 170
Query: 568 ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
P GV+ +VDE+G + G L ++ W + + + ETT G+Y
Sbjct: 171 VGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWV--MKGYWNN--PPETTAAATEDGWY 226
Query: 628 FTGD 631
TGD
Sbjct: 227 RTGD 230
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 2e-59
Identities = 141/513 (27%), Positives = 209/513 (40%), Gaps = 69/513 (13%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWK------EKWGQRVCSENLDVRKGNVKIEWFKGGI 198
Y +++ SVED A FW + W K V WF G
Sbjct: 8 YHALWRWSVEDLAAFWESV-----WDFFDVIGSKGYVVVLDG-----DIMPGARWFPGAR 57
Query: 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258
N N L D AIY D +++++L QV +LA L+D+GVK GD
Sbjct: 58 LNYAENLLRH----ADNDPAAIYAAGEDGERR-EISWAELRSQVARLAAALRDLGVKPGD 112
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
V YLP + E IAMLA A IGA+ S F +++ R +PKV+ +
Sbjct: 113 RVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNG 172
Query: 319 KAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
K + E K S+ V + S K+ +W
Sbjct: 173 KEHD----RREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDR--AA 226
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG--------YMVHTATTFKYAFDYKPS 429
E E + + PL++LY+SG+TG PK ++H GG + +H D +P
Sbjct: 227 PLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLKEHGLHC--------DLRPG 278
Query: 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489
D + GW+ + V +L+GA++V+++G+P YPD W + K +TIF T+
Sbjct: 279 DRLFYYTTTGWMMWNWLV--SGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSA 336
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 549
+ +L + G E + SLR + S G P+ P + W ++ V SD W + +
Sbjct: 337 KYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVK------SDVWLASIS 390
Query: 550 GGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602
GG T + G + P G G+ DE+G + GE G L +P
Sbjct: 391 GG---TDICGCFVGGNPTLPVYRGEIQCRGLGMAVEAFDEEGKPVIGE-VGELVCTKPFP 446
Query: 603 GAFRTLY----GDHERYETTYFKPFPGYYFTGD 631
LY D RY YF FPG + GD
Sbjct: 447 S--MPLYFWNDPDGSRYRDAYFDTFPGVWRHGD 477
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 1e-53
Identities = 113/421 (26%), Positives = 166/421 (39%), Gaps = 42/421 (9%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ G LTY +L ++ +LA L+ +GVK GD V I LP E IA
Sbjct: 25 PDRPALI----FLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R GAV + + LA + D KV+ITS +++A +
Sbjct: 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAE---------FAALLEAVAEAL 131
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW-VDAEDPLFLL 393
+ + V D I + + + P VD +D FLL
Sbjct: 132 PVVLVVLLVGDA--------------DDRLPITLEALAAEGPGPDADARPVDPDDLAFLL 177
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
YTSG+TG PKGV+ T + + A P DV I G P+
Sbjct: 178 YTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL 237
Query: 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
L G ++V+ P D +++KYKVT+ PT +R L+ + + S SLR
Sbjct: 238 LGGGTLVLLSPEP--FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS-SLR 294
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF 572
++ S G P+ P F G I + + TET + P KPGS P
Sbjct: 295 LVLSGGAPLPPELLERFEERFG--PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPL 352
Query: 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSW--PGAFRTLYGDHERYETTYFKPFPGYYFTG 630
GV+ IVD G E+ G + ++ G + E + + G+ TG
Sbjct: 353 PGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGY----WNRPEATAEAFDE--DGWLRTG 406
Query: 631 D 631
D
Sbjct: 407 D 407
|
Length = 534 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-53
Identities = 142/511 (27%), Positives = 212/511 (41%), Gaps = 66/511 (12%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWK-EKWGQRVCSEN--LDVRKGNVKIEWFKGGITNI 201
Y +++ SVED FW + F V + R WF G N
Sbjct: 36 YAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGRRMPGAR-------WFPGARLNY 88
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
N L R+ D+ AI + G L++++L +QV LA L+ +GV GD V
Sbjct: 89 AENLL-RH---RRDDRPAI-IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVA 143
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
YLP + E +AMLA A +GA+ S F + R +PKV+I + + G KA
Sbjct: 144 AYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAF 203
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK-CE 380
+ V A L S V V + Y +A W+D + E
Sbjct: 204 DRRAKV-AELRAALPSLEHV-VVVPYLGPAAAAAALPGALL-----WEDFLAPAEAAELE 256
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV--------HTATTFKYAFDYKPSDVY 432
E V + PL++LY+SG+TG PK ++H GG ++ H D P D +
Sbjct: 257 FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC--------DLGPGDRF 308
Query: 433 -WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
W T CGW+ + V +L GA++V+++G+P YPD WD+ + VT+F T+
Sbjct: 309 FWYTT-CGWMMWNWLV--SGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKY 365
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+ + + G + +LR +GS G P+ P + W + V +D W + +GG
Sbjct: 366 LDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVK------ADVWLASISGG 419
Query: 552 FMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
T + + P G G+ DE G + GE G L +P
Sbjct: 420 ---TDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPVVGE-VGELVCTKPFPS- 474
Query: 605 FRTLY----GDHERYETTYFKPFPGYYFTGD 631
L D RY YF FPG + GD
Sbjct: 475 -MPLGFWNDPDGSRYRDAYFDTFPGVWRHGD 504
|
Length = 655 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 2e-52
Identities = 88/250 (35%), Positives = 125/250 (50%), Gaps = 16/250 (6%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A+DP L +TSG+TG PK VLHT Y + T Y D +P D++W AD GW G
Sbjct: 78 TSADDPALLYFTSGTTGLPKMVLHTHS-YPLGHLVTGAYWLDLRPDDLHWTIADPGWAKG 136
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ P L GA+V V+ G D+ R+ +++++Y VT F PT R L++ +
Sbjct: 137 AWSSLFAPWLLGAAVFVYHGRRF--DAERTLELLERYGVTTFCAPPTAYRMLLQQD---L 191
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ 563
+ Y LR + S GEP+NP W+ G PI D + QTET G ++ PG
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWRAATG---LPIRDGYGQTET-GLLVANFPGM-EV 246
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS--WPGAFRTLYGDHERYETTYFK 621
KPGS P G + I+D++G E+ G + ++ PG FR D E+ E T
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRG 306
Query: 622 PFPGYYFTGD 631
+Y TGD
Sbjct: 307 ---DWYLTGD 313
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 5e-43
Identities = 120/497 (24%), Positives = 212/497 (42%), Gaps = 34/497 (6%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204
Y +++ SV++ FW + W + C+ +D R +WF G N N
Sbjct: 37 YDALHRWSVDELDTFWKAVWE---WFDVRFSTPCARVVDDRTM-PGAQWFPGARLNYAEN 92
Query: 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL 264
L R + +Y ++ A +T+++L +QV LA L+ +GV+ GD V YL
Sbjct: 93 LL-RAAGT---EPALLY--VDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYL 146
Query: 265 PMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 324
P + + +AMLA A +GA+ S F + + R +PK++ T + + K +
Sbjct: 147 PNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRR 206
Query: 325 DIVDAALDECAKSGISVDVCLTYENQS-AMTRENTKWQDGRDIWWQDVVPKYPT-KCEVE 382
D V E V + ++ A + + +D + E
Sbjct: 207 DKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGA-------LDLEDFTAAAQAAELVFE 259
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
+ + PL++L++SG+TG PK ++H+ GG +V D P D + GW+
Sbjct: 260 QLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMM 319
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ V+ + GA++V+++G+P +P + WDI ++ T+F T+ V + + G
Sbjct: 320 WNWLVS--GLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP 377
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGF-MITPLPGAW 561
+ +L+ + S G P+ P +RW + +D W + +GG + + GA
Sbjct: 378 ARTHDLSALQCVASTGSPLPPDGFRWVY------DEIKADVWLASISGGTDICSCFAGAN 431
Query: 562 PQKP---GSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616
P P G P G D +G + GE G L + P + D + +Y
Sbjct: 432 PTLPVHIGEIQAPGLGTAVQSWDPEGKPVTGE-VGELVCTNPMPSMPIRFWNDPDGSKYR 490
Query: 617 TTYFKPFPGYYFTGDGC 633
YF +PG + GD
Sbjct: 491 DAYFDTYPGVWRHGDWI 507
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 6e-43
Identities = 85/252 (33%), Positives = 116/252 (46%), Gaps = 23/252 (9%)
Query: 387 EDPLFLLYTSGSTGKPKGV------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
+D +YTSG+TG PKGV L YM +YA D + DV+W AD GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYM-------RYAIDLRDDDVFWNIADPGW 140
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
G Y GP+ G + V EG T + ++D++++ VT F +PT R LM G
Sbjct: 141 AYGLYYAITGPLAMGITTVFLEGGFTAEN---TYDVLERLGVTNFAGSPTAYRMLMAAGA 197
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ R K LRV S GEP+NP RWF +G I D + QTETG + A
Sbjct: 198 DAAARIKLK-LRVASSAGEPLNPEVVRWFQANLG---VTIHDHYGQTETGMPVGNHHALA 253
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK-SSWPGAFRTLYGDHERYETTY 619
+ GS P G + ++D+ G + G L I +S P + + Y D E T
Sbjct: 254 HEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDP--EKTA 311
Query: 620 FKPFPGYYFTGD 631
+Y TGD
Sbjct: 312 ELIAGRWYVTGD 323
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-38
Identities = 108/436 (24%), Positives = 181/436 (41%), Gaps = 49/436 (11%)
Query: 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257
I N LDR++ G GDK+A+Y D +LTY +L ++V + N L+++G+++
Sbjct: 2 IFNAAVYFLDRHLNEGRGDKIALY----YD--DGSLTYGELQEEVNRWGNALRELGIERE 55
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRG 317
+ V++ L E P A +IGAV + + D + D + +V++ S
Sbjct: 56 NRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEE---- 111
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
L +++ AL + + + + ++
Sbjct: 112 -----LWEVLKPALQK-----------DPHLRHVIVVGGAGPGAL----SYAQLIATAAE 151
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTA 436
+ E A+D F LY+SGSTG+PKGV+H M+ TA + K DV + A
Sbjct: 152 ELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHD-MLVTAEAYAKNVLGITEDDVVFSAA 210
Query: 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496
+ G Y P+ GA+ V+ PT PD + +++YK T+F+ PTL +++
Sbjct: 211 KLFFAYGLGNGLYFPLSVGATTVLMPERPT-PD--AVFATIERYKPTVFFGVPTLYAAML 267
Query: 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556
SLR+ S GE + + + G I D TE ++
Sbjct: 268 AAPE--KPERDLSSLRLCVSAGEALPAEIGYRWKELFG---LEILDGIGSTEMLHIFLSN 322
Query: 557 LPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 616
PGA K G++ P G + +VDE G E+ G L ++ + + E+
Sbjct: 323 RPGA--VKYGTSGKPVPGYEVKLVDEDGEEVADGEIGELWVRG--DSSAAGYWNRREKTR 378
Query: 617 TTYFKPFPGYYF-TGD 631
T F G + TGD
Sbjct: 379 ET----FVGEWTRTGD 390
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-34
Identities = 123/437 (28%), Positives = 183/437 (41%), Gaps = 40/437 (9%)
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N Y+ +D DK+A+ W +D G + T+ L + AN+ K +G+ KGD
Sbjct: 17 NFAYDVVDA-YADEEPDKLALIW-CDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDT 74
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI--MDCKPKVVITSNAVKRG 317
V++ L E +MLA +IGA+ ++ + RI K V I + V
Sbjct: 75 VMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVP-- 132
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
+ +D A EC + V V W D ++ P +
Sbjct: 133 -------EHIDEAAPECGSPTLLVLV---------GDPVPEGWIDFDKEI-ENASPDFER 175
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437
+ +D L + +TSG+TG PK V H + H T KY + K ++ AD
Sbjct: 176 PTGNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTA-KYWQNVKEGGLHLTVAD 234
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
GW YG + GA+V V++ P + + ++KY VT F PT+ R L++
Sbjct: 235 TGWGKAVWGKLYGQWIAGAAVFVYDYDKFDPKN--LLEKIEKYGVTTFCAPPTIYRFLIK 292
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
E +++Y SLR + GEP+NP + F G + + + QTET I
Sbjct: 293 ---EDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIK---LMEGFGQTET-TLTIATF 345
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS--WP-GAFRTLYGDHER 614
P P KPGS P G I+D G E G + I++S P G F Y D ER
Sbjct: 346 PWMEP-KPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPER 404
Query: 615 YETTYFKPFPGYYFTGD 631
+ GYY TGD
Sbjct: 405 TAEVWHD---GYYHTGD 418
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 97/417 (23%), Positives = 160/417 (38%), Gaps = 65/417 (15%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
LT++ LL++ +LA L+ +G+K+GD V + P +E P L C G + S +
Sbjct: 10 ELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSY 69
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV-CLTYENQ 350
+ D LA ++ KPK++ D +D + + G V + L
Sbjct: 70 TPDELAHQLKISKPKLIFCD------------PDELDKVKEAAKELGPVVRIIVLDSAPD 117
Query: 351 SAMTREN-TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ E+ + + G + ++ +D LLY+SG+TG PKGV+ +
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLI---------DGKDDTAALLYSSGTTGLPKGVMLSH 168
Query: 410 GGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITG-HSYVTYGPMLNGASVVVFEGAPT 466
+ +DV G + + +L GA+V++
Sbjct: 169 KNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLAS--LLCGATVIIM----P 222
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN---- 522
DS +++KYKVT + P + +L + V +Y SLRV+ S P++
Sbjct: 223 KFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPL--VDKYDLSSLRVIFSGAAPLSKELQ 280
Query: 523 ---PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI 579
+ I + TETG PG KPGS V+ I
Sbjct: 281 EELRKRF---------PNTTIKQGYGMTETGPATTLTPPGDE--KPGSVGRLVPNVEAKI 329
Query: 580 VDEKGVEI-----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
VDE G + GE LC+K P + + E + T + G+ TGD
Sbjct: 330 VDEDGGKSLGPNERGE----LCVKG--PQIMKGYLNNPEATKETIDE--DGWLHTGD 378
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 8e-32
Identities = 105/450 (23%), Positives = 175/450 (38%), Gaps = 101/450 (22%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL---PMLMELP 271
DK A+Y++ TY++L ++V +LAN L+ +GVKKGD V ++ +E
Sbjct: 20 PDKEAVYFD------GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLE-- 71
Query: 272 IAMLACARIGAV-HSV-VFAGFSSDSLAQRIMDCKPKVVITSNAV-----KRGPKAIHLK 324
A A +IGAV H + + + +A + D + +VV+ + P+ ++
Sbjct: 72 -AYFAVPKIGAVLHPINIR--LKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVR 128
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
++ + + ++ +V YE A + + D +
Sbjct: 129 TVI--VEGDGPAAPLAPEV-GEYEELLAAASDTFDFPD---------------------I 164
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY-----------W 433
D D +LYTSG+TG PKGV+ + +H+ DVY W
Sbjct: 165 DENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAV-CAWLKLSRDDVYLVIVPMFHVHAW 223
Query: 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS---GRSWDIVDKYKVTIFYTAPT 490
G Y ++ GA V P D+++ +VT F+ PT
Sbjct: 224 -----GL-------PYLALMAGAKQV-------IPRRFDPENLLDLIETERVTFFFAVPT 264
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
+ + L++ Y +S SLR++ G + P+ R F G + + TET
Sbjct: 265 IWQMLLKAPRAYFVDFS--SLRLVIYGGAALPPALLREFKEKFG---IDLVQGYGMTETS 319
Query: 551 GFM-ITPL----PGAWPQKPGSATFPFFGVQPVIVDEKGVEIE--GECSGYLCIKSSWPG 603
+ + P PG W K SA P GV+ IVD+ G E+ G G + ++ W
Sbjct: 320 PVVSVLPPEDQLPGQWT-KRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPW-- 376
Query: 604 AFRTL--YGDHERYETTYFKPFPGYYFTGD 631
+ E T G+ TGD
Sbjct: 377 --LMQGYWNRPEATAETIDG---GWLHTGD 401
|
Length = 521 |
| >gnl|CDD|221322 pfam11930, DUF3448, Domain of unknown function (DUF3448) | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-31
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+ Y E+Y+ S+EDP GFWA+ A E W + W +V + I+WF GG N
Sbjct: 3 DMEAYQELYEESIEDPEGFWAEQAEELDWFKPW-DKVLDWS-----NAPFIKWFVGGKLN 56
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEAND 226
YNCLDR++E G GDKVAI WE ++
Sbjct: 57 ASYNCLDRHLETGRGDKVAIIWEGDE 82
|
This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 80 amino acids in length. This domain is found associated with pfam00501. This domain has a conserved DRH sequence motif. This domain has two completely conserved residues (N and A) that may be functionally important. Length = 82 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-28
Identities = 92/429 (21%), Positives = 151/429 (35%), Gaps = 98/429 (22%)
Query: 234 TYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
TY +L ++ +LA +L+ GV GD V + L EL +A+LA + GA + + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
++ LA + D ++++T +A+ + L I +D
Sbjct: 61 AERLAFILEDAGARLLLTDSAL-------------ASRLAGLVLPVILLDPLEL------ 101
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
P P +D +++YTSGSTG+PKGV+ T
Sbjct: 102 ------------AALDDAPAPPPPD----APSGPDDLAYVIYTSGSTGRPKGVVVTHRS- 144
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEGAP 465
+V+ + P D + S +G +L GA++VV
Sbjct: 145 LVNLLAWLARRYGLDPDDR--------VLQFASLSFDASVEEIFGALLAGATLVVPPEDE 196
Query: 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525
D+ ++ ++ VT+ P+L+ L + SLR++ GE + P+
Sbjct: 197 ERDDAALLAALIAEHPVTVLNLTPSLLALLAAALPP-----ALASLRLVILGGEALTPAL 251
Query: 526 ---WRWFFNVVGDSRCPISDTWWQ----TE-TGGFMITPLPGAWPQKPGSATF--PFFGV 575
WR +R TE T T + + P
Sbjct: 252 VDRWRA---RGPGAR------LINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANT 302
Query: 576 QPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT--YFKPFPGY--- 626
+ ++D+ V + GE L I PG R G R E T F P P
Sbjct: 303 RLYVLDDDLRPVPVGVVGE----LYI--GGPGVAR---GYLNRPELTAERFVPDPFAGGD 353
Query: 627 ----YFTGD 631
Y TGD
Sbjct: 354 GARLYRTGD 362
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-27
Identities = 136/516 (26%), Positives = 212/516 (41%), Gaps = 90/516 (17%)
Query: 147 EMYKRSVEDPAGFWADIASEFYWKEKWG----------QRVCSENLDVRKGNVKIEWFKG 196
E + SVE+P E YW + + + + G W G
Sbjct: 124 EFQRFSVENP---------EVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQ---WLPG 171
Query: 197 GITNICYNCLDRNIEAGLGDKVAIYW--EANDPGVDATLTYSQLLQQVCQLANYLKDIGV 254
+ N+ CL D +AI W E +D +T S+L QV ++AN L +G
Sbjct: 172 AVLNVAECCLTPKPSKTD-DSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGF 230
Query: 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAV 314
+KGDA+ I +PM + I LA G V + F+ +A R+ K K + T + +
Sbjct: 231 EKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVI 290
Query: 315 KRGPKAIHL-KDIVDAALDEC---AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370
RG K+I L +V+A + G SV V L RE D+ W D
Sbjct: 291 VRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKL---------REG-------DMSWDD 334
Query: 371 VVPKY-PTKCEVEWVDAEDPL----FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-- 423
+ + + E+ E P+ +L++SG+TG+PK + T T + A
Sbjct: 335 FLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWT-------QLTPLRAAAD 387
Query: 424 ----FDYKPSDVY-WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 478
D + D+ W T + GW+ G ++ Y +LNGA++ ++ G+P + V
Sbjct: 388 AWAHLDIRKGDIVCWPT-NLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAK---FVQ 442
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538
KVT+ T P++V++ + S+R GS GE + + W SR
Sbjct: 443 DAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRCFGSTGEASSVDDYLWLM-----SRA 495
Query: 539 ---PISDTWWQTETGGFMITPLPGAWPQKPGSATF--PFFGVQPVIVDEKGVEI--EGEC 591
PI + TE GG +T G+ Q A F P G + I+D+ G + C
Sbjct: 496 GYKPIIEYCGGTELGGGFVT---GSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPC 552
Query: 592 SGYLCIKSSWPGAFRTLY-GDHERYETTYFKPFPGY 626
+G L + GA TL DH + YFK P +
Sbjct: 553 TGELALFPLMFGASSTLLNADHYK---VYFKGMPVF 585
|
Length = 728 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 14/248 (5%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTADCGWITG 443
++DP L+YTSG+TG PKG LH + H + F+ +P DV+W AD WI G
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLP-GVELYFELAPRPGDVFWTPADWAWIGG 145
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
V + G VV + D R++ ++ +Y VT + PT ++ + R G+E
Sbjct: 146 LLDVLLPALYFGVPVVAYR--MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSE-R 202
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ 563
RY + LR + S GE + W + +G +++ + QTE ++ P
Sbjct: 203 ARYDLR-LRAVASGGESLGEELLEWARDELGL---TVNEFYGQTEANL-VVGNCAALGPA 257
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623
+PGS P G + +VD+ G + G + +K P F Y ++ E T K
Sbjct: 258 RPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLG-YWNNP--EATAAKFA 314
Query: 624 PGYYFTGD 631
+ TGD
Sbjct: 315 GDWLLTGD 322
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 100/380 (26%), Positives = 158/380 (41%), Gaps = 38/380 (10%)
Query: 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+PM ++ I LA G V V FS+ +A R+ K V T + V RG +A+ L
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 324 KD-IVDAALDECA---KSGISVDVCLTYENQSAMTRENTKWQD--GRDIWWQDVVPKYPT 377
+V+AA + +G V V L ++ S W D G V +
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLS--------WCDFLGVAAAQGSVGGNEYS 112
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGV--LHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435
+ E +L++SG+TG+PK + H + + A+ D +P DV
Sbjct: 113 P---VYAPVESVTNILFSSGTTGEPKAIPWTHLSP---LRCASDGWAHMDIQPGDVVCWP 166
Query: 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ GW+ G ++ Y LNGA++ ++ GAP G V VT+ P++V++
Sbjct: 167 TNLGWMMG-PWLLYSAFLNGATLALYGGAPLGRGFG---KFVQDAGVTVLGLVPSIVKAW 222
Query: 496 MRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI- 554
G + LRV S GE W +V G + P+ + TE I
Sbjct: 223 RHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYK-PVIEYCGGTELASGYIS 281
Query: 555 -TPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAF-RTLYG 610
T L PQ PG+ + G + V++++ GV + C G + + GA R L
Sbjct: 282 STLLQ---PQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNA 338
Query: 611 DHERYETTYFKPFPGYYFTG 630
DH++ Y+K P Y G
Sbjct: 339 DHDK---VYYKGMPMYGSKG 355
|
Length = 499 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 98/421 (23%), Positives = 166/421 (39%), Gaps = 47/421 (11%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
GD+ A+ D LTY++L + V +LA L G +KGD V++ P +E P+
Sbjct: 19 GDRPALI----DAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVF 74
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA GAV + ++ +A+++ D K+ IT++ + + + AL+
Sbjct: 75 LAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSEL--------AEKLASLALEP- 125
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
V + + ++ SA + + V + +D L Y
Sbjct: 126 ------VVLLDSADDGSAAIDDLLFAD--------------EPEPPVVVIKQDDVAALPY 165
Query: 395 TSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
+SG+TG+ KGV+ T + + A ++ DV C I G + + +
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
GA+VVV P + D + ++KYKVT P +V +L++ + V +Y SL+
Sbjct: 226 LGATVVVM---PRF-DLEKFLAAIEKYKVTHLPVVPPIVLALVK--HPIVDKYDLSSLKQ 279
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+GS P+ F + + TE+ KPGS
Sbjct: 280 IGSGAAPLGKELAEAFRARFPG--VELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVP 337
Query: 574 GVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
V+ IVD E G + G L ++ P + + E T K G+ TGD
Sbjct: 338 NVEAKIVDPETGESLPPNQPGELWVRG--PQVMKGYLNNPEATAETIDK--DGWLHTGDL 393
Query: 633 C 633
Sbjct: 394 G 394
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 7e-27
Identities = 70/248 (28%), Positives = 105/248 (42%), Gaps = 22/248 (8%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+DP +LYTSG+TG+PKGV+ T + + D P DVY A G +
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHAAGGLF 59
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
+ + G +VV+ D D++++++VT + PT+ + L+R + RY
Sbjct: 60 LLPA-LAAGGTVVLMPK----FDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPD--FARY 112
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG 566
SLR++ P+ R G + TETG P W +K G
Sbjct: 113 DLSSLRLIIYGAAPMPAELKRAMIEWFG---PVFVQGYGMTETGPTTTLLSPEDWLRKLG 169
Query: 567 SATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT--YFKPF 623
S P GV+ IVDE G E+ GE G + ++ P G R E T +
Sbjct: 170 SVGRPVPGVEVRIVDEDGRELPPGEV-GEIVVRG--PAVMA---GYWNRPEATAEALR-- 221
Query: 624 PGYYFTGD 631
G+ TGD
Sbjct: 222 DGWLHTGD 229
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 83/259 (32%), Positives = 120/259 (46%), Gaps = 30/259 (11%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
A+DP+ L +TSG+TG PK VLHT Y V +T Y +P D++ + GW H
Sbjct: 82 RADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTM-YWIGLQPGDIHLNISSPGW-AKH 139
Query: 445 SYVT-YGPMLNGASVVVFEGAPTYP--DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
++ + + P GA+V YP D+ R ++K+ VT F PT+ R ++ +
Sbjct: 140 AWSSFFAPWNAGATVFGIN----YPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQ---Q 192
Query: 502 YVTRYSRKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
+ +Y LR S GEP+NP + + + I D + QTET MI P
Sbjct: 193 DLAQY-DVRLREAVSAGEPLNPEVIERVKKAWGLT------IRDGYGQTETTA-MIGNSP 244
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK-SSWP-GAFRTLYGDHERYE 616
G KPGS P G + V++D++G EI G + + P G GD E+
Sbjct: 245 GQ-KVKPGSMGRPLPGYRVVLLDDEGKEIPVT-EGEIALDLGDRPIGLMLGYMGDPEK-- 300
Query: 617 TTYFKPFPGYYFTGDGCSR 635
T GYY TGD R
Sbjct: 301 -TAAAFRGGYYRTGDKAYR 318
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-26
Identities = 67/363 (18%), Positives = 123/363 (33%), Gaps = 81/363 (22%)
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
+ L A D VA+ LTY++L + +LA L +GV G+ V
Sbjct: 228 TIHLLFEEQAATTPDAVALVRG------GQQLTYAELDARANRLARLLISLGVGPGETVA 281
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
I +EL +A+LA + GA + + + ++ LA + D +P +++T
Sbjct: 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT----------- 330
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
A L + + D D P
Sbjct: 331 ------QAHLRVDDVGLPGLAL------------------DDALSEIPDTDPIP------ 360
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGG---YMVHTATTFK------------YAFDY 426
+ + + +++YTSGSTG+PKGV + F +FD
Sbjct: 361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDA 420
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
+++ +L GA +V+ D ++++ +T+
Sbjct: 421 SVFEIFG-----------------ALLEGARLVLAPALLQ-VDPAALLELLEAQGITVLL 462
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
P L+R L+ + LR L S GE + + + + +R + + +
Sbjct: 463 LVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL-NLYGP 521
Query: 547 TET 549
TE
Sbjct: 522 TEA 524
|
Length = 642 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 9e-26
Identities = 107/419 (25%), Positives = 180/419 (42%), Gaps = 48/419 (11%)
Query: 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279
W N G + ++ +L + AN L G+++GD V + LP + E + +AC R
Sbjct: 30 LWWVNGKGDEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIR 89
Query: 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339
G V ++ + R+ K K ++TS+ + VD+ EC
Sbjct: 90 TGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDELAPA---------VDSIASECPSLKT 140
Query: 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGST 399
+ V S +R+ W + +++++ + T+ +++P+ + +TSG+T
Sbjct: 141 KLLV-------SEHSRDG--WLN-----FKELLKEASTEHTCVKTKSQEPMAIYFTSGTT 186
Query: 400 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459
G PK H+ + +Y D PSD+ W +D GWI + + P + GA V
Sbjct: 187 GFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVF 246
Query: 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519
V P + KY +T F +APT+ R L++ + +T Y KSLR + GE
Sbjct: 247 VHHLPRFDPKV--ILQTLSKYPITTFCSAPTVYRMLVQ---QDLTSYKFKSLRHCVTGGE 301
Query: 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS--ATFPFFGVQP 577
P+NP + G + + + QTETG +I KPGS P + VQ
Sbjct: 302 PLNPEVLEQWKAQTG---LDLYEGYGQTETG--LICANFKGMKIKPGSMGKASPPYDVQ- 355
Query: 578 VIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLY-GDHERYETTYFKPFPGYYFTGD 631
I+D+ G + EG+ + +K + P + Y + E+ T F Y TGD
Sbjct: 356 -IIDDNGNVLPPGTEGDIG--IRVKPTRPFCLFSCYVDNPEKTAATIRGDF---YITGD 408
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 103/422 (24%), Positives = 153/422 (36%), Gaps = 107/422 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ + D + TY++L V ++A L D+G+KKGD V + L
Sbjct: 26 DKTALVFG------DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
ACAR GAVH V + + LA + + + A L +AAL
Sbjct: 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---------LAPTAEAALALLP 130
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + + L + W + P +VE + +D +LYT
Sbjct: 131 VDTLILSLVLGGREAPGGWLDFADWAEAGS----VAEP------DVE-LADDDLAQILYT 179
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKY-----AFDYKPSDV-------YWCTADCGWITG 443
SG+ PKG + T H A +Y A D D+ Y C
Sbjct: 180 SGTESLPKGAMLT------HRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQ------- 226
Query: 444 HSYVTYGPMLN-GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
V GP L GA+ V+ + PD ++ ++T F+ PT+ SL+R +
Sbjct: 227 -LDVFLGPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD-- 279
Query: 503 VTRYSRKSLR------------VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
SLR VL + E + P F+N G QTE
Sbjct: 280 FDTRDLSSLRKGYYGASIMPVEVLKELRERL-PGL--RFYNCYG-----------QTE-- 323
Query: 551 GFMITPL-----PGAWPQKPGSATFPFFGVQPVIVDEKGVEI-EGE-----------CSG 593
I PL P ++PGSA P V+ +VD+ G ++ GE G
Sbjct: 324 ---IAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLG 380
Query: 594 YL 595
Y
Sbjct: 381 YW 382
|
Length = 523 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 29/254 (11%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADC--GWI 441
+A+D + LYTSG+TGKPKGV+H + A F + +P D + ++ +
Sbjct: 89 EADDIAYWLYTSGTTGKPKGVMHRHRD-PLTFAEAFARELLGLQPGDRIFSSSKLFFAYG 147
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
G+S P+ +GAS V+ P +P D++ +++ T+ + P L R+L+ G
Sbjct: 148 LGNSL--LFPLFSGASAVL---LPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA- 201
Query: 502 YVTRYSRKSLRVLGSVGEPINPSA----WRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
+ +S+R+ S GE + P+ W I D TE I+
Sbjct: 202 -GSAPLFRSVRLCVSAGEAL-PAGLAERWAEATG------IEILDGIGSTEVLHIFISNR 253
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617
PGA +PG+ P G + +VDE G E+ G L ++ P G E
Sbjct: 254 PGAA--RPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRG--PSLAP---GYWNLPEK 306
Query: 618 TYFKPFPGYYFTGD 631
T G+ TGD
Sbjct: 307 TQRTLRDGWLRTGD 320
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 110/428 (25%), Positives = 177/428 (41%), Gaps = 62/428 (14%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
LDRN+ G G K A D ++L+Y +L QV +L L+ +GVK+ + V++ +
Sbjct: 10 LDRNVVEGRGGKTAF----IDDI--SSLSYGELEAQVRRLGAALRRLGVKREERVLLLML 63
Query: 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI---- 321
++ PIA L R G V + ++D A + D + +VV S + KA
Sbjct: 64 DGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS 123
Query: 322 -HLKDIVDAALDECAKSGISVDVCLTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
HL+ V E + ++ + E + A T+
Sbjct: 124 PHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQ------------------------ 159
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADC 438
A+DP F LY+SGSTG PKGV+HT TA + + + DV + A
Sbjct: 160 ------ADDPAFWLYSSGSTGMPKGVVHTHSN-PYWTAELYARNTLGIREDDVVFSAAKL 212
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G PM GA+ V+ PT PD +D + +++ TIFY PTL +++ D
Sbjct: 213 FFAYGLGNALTFPMSVGATTVLMGERPT-PD--AVFDRLRRHQPTIFYGVPTLYAAMLAD 269
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSA---WRWFFNVVGDSRCPISDTWWQTETGGFMIT 555
N + LR+ S GE + W+ F V I D TE ++
Sbjct: 270 PNLPAED--QVRLRLCTSAGEALPAEVGQRWQARFGV------DIVDGIGSTEMLHIFLS 321
Query: 556 PLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERY 615
LPG + G++ P G + +V + G ++ G L I S P + + + +
Sbjct: 322 NLPGD--VRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLI--SGPSSATMYWNNRAKT 377
Query: 616 ETTYFKPF 623
T+ +
Sbjct: 378 RDTFQGEW 385
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 9e-22
Identities = 66/228 (28%), Positives = 95/228 (41%), Gaps = 27/228 (11%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447
D +LYTSG+TG PKGVL T ++ A +P DV I +Y
Sbjct: 82 DTAAILYTSGTTGPPKGVL-LTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYS 140
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR---DGNEYVT 504
Y +L GA++V+ P + + R WD V K+ T+F + LM+ ++
Sbjct: 141 VYAALLVGATLVL---LPRF-SASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDD--- 193
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
LR + P+ + W F F V + + + TETG +I P
Sbjct: 194 --RDHPLRFVFGA--PLPAAIWPAFEERFGV------KLVEGYGMTETGVPIIAPGD--- 240
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY 609
P PGS P GV+ IVDE G E+ G L ++ P A Y
Sbjct: 241 PAPPGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGY 288
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-20
Identities = 91/440 (20%), Positives = 155/440 (35%), Gaps = 69/440 (15%)
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
+ R E + + G +TY +L ++V LA+ L +G+ GD V I
Sbjct: 16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAI 75
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
+ E IA LA +GAV +++ + + LA + + + KV+ N + +
Sbjct: 76 FAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQ-ELLDLVLP 134
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQ--SAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
+ + +D + V + L E A+ E + G ++ D +
Sbjct: 135 VLEDCPKVVD------LIVIIDLVREAVEAKALVLEVFPDE-GISLFLIDSAGL---EGR 184
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
+ +D ++YTSG+TG PKGV+ T + A + P D
Sbjct: 185 IAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAH 244
Query: 441 ITGHSYVTYGPMLNGASVVVFEG-----------APTY----PDSGRSWDIVDK------ 479
I ++ + G +V+ E PT P R W+ V K
Sbjct: 245 IFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVP---RVWEKVYKGIMEKV 301
Query: 480 -----YKVTIFYTA-------------PTLVRSLMRDGNEYVTRYSRKSL----RVLGSV 517
+ +F A S + + V R R +L R S
Sbjct: 302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSG 361
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSATFPFFGVQ 576
G P++P FF +G PI + + TET + P G+ P G++
Sbjct: 362 GAPLSPELLH-FFRSLG---IPILEGYGLTETSAVVSVNPP---DRFVLGTVGKPLPGIE 414
Query: 577 PVIVDEKGVEIEGE--CSGY 594
I D+ + + G GY
Sbjct: 415 VKIADDGEILVRGPNVMKGY 434
|
Length = 613 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-20
Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 22/251 (8%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+DP + YTSG+TG+PKG + T +++ + D + G
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRN-VLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLV 59
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+ GA++V+ D G + ++++ ++T + PT+ +L+ + +
Sbjct: 60 LGVLASLTAGATLVL----MEKFDPGAALRLIERERITALHGVPTMFIALLEHPDF--DK 113
Query: 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP-QK 564
+ SLR S G P+ P R I+ + TET G +
Sbjct: 114 FDLSSLRTGISGGAPVPPELVRRIREEFPM--AEITTGYGMTETSGVGTQTSGDDPYEDR 171
Query: 565 PGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
PG+ P GV+ IVD G E+ GE +C++ + Y D E
Sbjct: 172 PGTVGRPLPGVEVKIVDPDGGEVPPGEVGE----ICVRG--YSVMKGYYNDPEATAEAID 225
Query: 621 KPFPGYYFTGD 631
G+ TGD
Sbjct: 226 A--DGWLHTGD 234
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-19
Identities = 80/325 (24%), Positives = 126/325 (38%), Gaps = 44/325 (13%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAM 274
DK AI + ++Y +LL++ +LA YL+ GV+KGD V++Y+ + IA
Sbjct: 25 DKTAIVF------YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY 78
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS----NAVKRGPKAIHLKDIVDA- 329
A R AV V + LA + D +V I V + L+ ++ A
Sbjct: 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQ 138
Query: 330 ---ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
L A+ I+V L E G + W++ +
Sbjct: 139 YSDYLP--AEPEIAVPAWLRAEPPLQALAP------GGVVAWKEALAAGLAPPPHT-AGP 189
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+D L YTSG+TG PKG +HT M A + P V +TG +
Sbjct: 190 DDLAVLPYTSGTTGVPKGCMHTHRTVM-ANAVGSVLWSNSTPESVVLAVLPLFHVTGMVH 248
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDGN 500
P+ GA+VV+ WD ++++Y+VT + PT+V +
Sbjct: 249 SMNAPIYAGATVVLMP----------RWDREAAARLIERYRVTHWTNIPTMVVDFLASPG 298
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSA 525
+ SLR +G G + P A
Sbjct: 299 --LAERDLSSLRYIGGGGAAM-PEA 320
|
Length = 546 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 6e-19
Identities = 64/292 (21%), Positives = 103/292 (35%), Gaps = 51/292 (17%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ + D TY + + +LA+ L +G+ KGD V + P + A
Sbjct: 18 PDRTAVVY------GDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAH 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA-------VKRGPKAIHLKDIV 327
GAV + +D +A + + KV+ + D
Sbjct: 72 FGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTE 131
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
+ A+ D YE+ A + D EW
Sbjct: 132 IIVISPAAEDSEEGD----YEDLLAGGDPDPLPIPPDD----------------EW---- 167
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD----CGWITG 443
DP+ L YTSG+TG PKGV++T G ++ A + VY T GW
Sbjct: 168 DPISLNYTSGTTGNPKGVVYTHRGAYLN-ALGNVIEWGMPDRPVYLWTLPMFHCNGW--C 224
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ G + V D+ +D+++K+KVT APT++ L
Sbjct: 225 F---PWAITAVGGTHVCLRK----VDAPAIYDLIEKHKVTHLCGAPTVLNML 269
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-18
Identities = 79/335 (23%), Positives = 121/335 (36%), Gaps = 75/335 (22%)
Query: 212 AGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
A D + +D + TLTY++L ++ +A L+ +G GD V++ P ++
Sbjct: 4 AAQPDARYTFL-FDDDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFV 61
Query: 272 IAMLACARIGAV----HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327
A C GA+ G LA + D + V+T++AV +
Sbjct: 62 AAFFGCLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAA---------L 112
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
AAL A + + +A W+ P D +
Sbjct: 113 RAALAAPAALLLLLIAADDLAALAAAD-------------WRPPPP-----------DPD 148
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT-----ADCGWIT 442
D FL YTSGSTG PKGV+ T G + + + AF P DV + D G I
Sbjct: 149 DIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIAR-AFGLDPDDV-GVSWLPLYHDMGLIG 206
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTY----PDSGRSW-DIVDKYKVTIFYTAPTLVRSLMR 497
G P+ G VV+ +P P W + + +Y+ T+ AP L
Sbjct: 207 G----LLQPLYAGFPVVLM--SPLAFLRRP---LRWLEAISRYRATVSG-APNFAYDLC- 255
Query: 498 DGNEYVTRYSRK--------SLRVLGSVGEPINPS 524
V R + S RV + EP+
Sbjct: 256 -----VRRVRDEQLAGLDLSSWRVAFNGAEPVRAD 285
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 6e-18
Identities = 65/285 (22%), Positives = 110/285 (38%), Gaps = 71/285 (24%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D +A+ + D +LTY++L ++ +LA L+ GV GD V + L EL +A+L
Sbjct: 2 DAIALVYG------DRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRI--M--DCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331
A + GA + A+R+ M D +V++T ++ +A L ++
Sbjct: 56 AILKAGA----AYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILE-- 109
Query: 332 DECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF 391
+E VDA+D +
Sbjct: 110 EELDAEDAGPPAPA--------------------------------------VDADDLAY 131
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW------ITGHS 445
++YTSGSTG+PKGV G +V Y P D + + + I
Sbjct: 132 VMYTSGSTGRPKGVAVPHRG-VVRLVRNTNYI-ALDPDDRFLQLSPLSFDASTFEI---- 185
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI-FYTAP 489
+G +LNG +V+ + T D R ++ + VT+ + TA
Sbjct: 186 ---WGALLNGGRLVLIDKE-TLLDPDRLARLIAEQGVTVLWLTAA 226
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-17
Identities = 63/226 (27%), Positives = 95/226 (42%), Gaps = 30/226 (13%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+DP +L+TSG+TG+PKGV T ++ +A + PSD I G
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKN-LLASARNIAKSHKLTPSDRCLNVMPLFHIHGLI 59
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+L G SVV P + + WD + KY+VT + PT+ + L++
Sbjct: 60 VSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKP-NPG 114
Query: 506 YSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGFM-ITPLPGAW 561
LR + S P+ P+ F V P+ + + TE + PLP
Sbjct: 115 KPPPRLRFIRSASAPLPPAVLDRLEKRFGV------PVLEAYGMTEAAHQIASNPLPPL- 167
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEI----EGE--------CSGYL 595
+KPGS P GV+ I+D+ G + EGE +GYL
Sbjct: 168 VRKPGSVGRP-AGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYL 212
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 29/244 (11%)
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
I ++D + + +D L YT G+TG PKG + T +V
Sbjct: 103 AISFEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRN-LVANVQQIAAWV 161
Query: 425 DY--KPSDVYWCTADC-------GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
+ D + G + GA+ V+
Sbjct: 162 KDLREGEDRFLT---ALPLFHIFGLTVNMLL----GLRLGATNVLV----PNFRPINVLK 210
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
+ +Y+ TIF PTL +L+ + +Y SLR+ S G P+ F G
Sbjct: 211 EIKRYRFTIFPGVPTLYNALLN--HPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTG- 267
Query: 536 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGY 594
P+ + + TET + T P +KPGS P G + IVD++G E+ GE G
Sbjct: 268 --APLVEGYGLTETSP-VTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGE-VGE 323
Query: 595 LCIK 598
L ++
Sbjct: 324 LVVR 327
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-16
Identities = 85/407 (20%), Positives = 148/407 (36%), Gaps = 77/407 (18%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
GDK A + D LTY++L +V + A L +G+ KGD V I+ P IA
Sbjct: 18 FGDKEAYVFG------DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIA 71
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN----AVKRGPKAI-HLKDIVD 328
L + GAV + +++D A + K + + L+ +V
Sbjct: 72 ALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVV- 130
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV-PKYPTKCEVEWVDAE 387
+C T E+ + T + D + P + E VD +
Sbjct: 131 --------------ICETEEDDPHTEKMKT---------FTDFLAAGDPAERAPE-VDPD 166
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC----------TAD 437
D +L+TSG+TG+PKG + T + + A +Y D Y A
Sbjct: 167 DVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYLAANPFFHVFGYKA- 224
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
G P++ GA+++ P + D + +++ ++T+ PT+ SL++
Sbjct: 225 -GVNA--------PLMRGATILP---LPVF-DPDEVFRLIETERITVLPGPPTMYNSLLQ 271
Query: 498 --DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGF 552
D + SLR+ + + + F V + + +E G
Sbjct: 272 HPDRSA----EDLSSLRLAVTGAASMPVALLERFESELGVD-----IVLTGYGLSEASGV 322
Query: 553 M-ITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598
L G+ GV+ IV+E G E+ G L ++
Sbjct: 323 TTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVR 369
|
Length = 513 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 8e-16
Identities = 97/400 (24%), Positives = 150/400 (37%), Gaps = 55/400 (13%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-- 289
T TY++LL V + AN L +GV GD V LP L E A+ G +
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----GEAAGIANPIN 113
Query: 290 -GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI---VDAALDECA--KSGISVDV 343
+ +A+ + KV++T + P DI V L ++ + VD+
Sbjct: 114 PLLEPEQIAELLRAAGAKVLVT---LGPFPGT----DIWQKVAEVLAALPELRTVVEVDL 166
Query: 344 --CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV--EWVDAEDPLFLLYTSGST 399
L + A+ K R + + + + P + +D +T G+T
Sbjct: 167 ARYLPGPKRLAVPLIRRK-AHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTT 225
Query: 400 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT-YGPMLNGASV 458
G PK HT G V A P D +C + VT P+ GA V
Sbjct: 226 GMPKLAQHTHGN-EVANAWLGALLLGLGPGDTVFCGLPLFHVNA-LLVTGLAPLARGAHV 283
Query: 459 VVFEGAPT---YPDSG---RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
V+ T Y G W IV++Y++ PT+ +L++ V + SLR
Sbjct: 284 VL----ATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQ---VPVDGHDISSLR 336
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKPGSA--T 569
P+ +R F G I + + TE T + P G ++ GS
Sbjct: 337 YALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVSSVNPPDG--ERRIGSVGLR 391
Query: 570 FPFFGVQPVIVDEKGVEIEGECS----GYLCIKSSWPGAF 605
P+ V+ VI+D+ G +C+ G LCI P F
Sbjct: 392 LPYQRVRVVILDDAG-RYLRDCAVDEVGVLCIAG--PNVF 428
|
Length = 632 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 1e-15
Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
D +D +++YTSGSTG+PKGV+ G +V+ + + D A +
Sbjct: 90 TDPDDLAYVIYTSGSTGRPKGVMVEHRG-LVNLLAWLQERYGLTAGDRVLQFASFSFDAS 148
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ + P+L+GA++V+ D +++ ++++T+ + P+L+R+L+ + +
Sbjct: 149 V-WEIFPPLLSGATLVLAPPE-VLRDPEALAELLREHRITVLHLVPSLLRALL----DAL 202
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ SLR++ GE + R + + +R
Sbjct: 203 EPAALPSLRLVIVGGEALPAELVRRWRELFPGAR 236
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-15
Identities = 64/300 (21%), Positives = 105/300 (35%), Gaps = 87/300 (29%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ +E D +++Y++L + + A++ GV KGD V + + E A
Sbjct: 51 PDRPALLFE------DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW 104
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L A++GAV +++ LA + N V K + IV L E
Sbjct: 105 LGLAKLGAVVALLNTQQRGAVLAHSL-----------NLVD--AKHL----IVGEELVEA 147
Query: 335 ---AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV---VPKYPTKCEVEW--VDA 386
A++ ++ L + +G ++D+ PT V A
Sbjct: 148 FEEARADLARPPRLWVAGG-----DTLDDPEG----YEDLAAAAAGAPTTNPASRSGVTA 198
Query: 387 EDPLFLLYTSGSTGKPKGVL--H----TTGGYMVHTATTFKYAFDYKPSDVYWCT----- 435
+D F +YTSG+TG PK + H G P DV +C
Sbjct: 199 KDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-------RLTPDDVLYCCLPLYH 251
Query: 436 ---ADCGWITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRS------WDIVDKYKVTIF 485
W +L GA++ + R WD V +Y+ T F
Sbjct: 252 NTGGTVAW---------SSVLAAGATLAL----------RRKFSASRFWDDVRRYRATAF 292
|
Length = 600 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-15
Identities = 81/368 (22%), Positives = 137/368 (37%), Gaps = 47/368 (12%)
Query: 227 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 286
+TY +L ++ +LA+ + +G+K+GD V I++ + A R G ++
Sbjct: 19 ASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTC 78
Query: 287 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346
V + + A + D + +ITS A K D+ A L +C V L
Sbjct: 79 VNSHLTPAEAAYIVDDSGARALITSAA-----KL----DVARALLKQCPG----VRHRLV 125
Query: 347 YENQSAMTRENTKWQDGRDIWWQDVV---PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
+ + + + + V P P E D +LY+SG+TG+PK
Sbjct: 126 LDGDGELEG----FVG-----YAEAVAGLPATPIADESLGTD------MLYSSGTTGRPK 170
Query: 404 GVLHTTGGYMVHTATT----FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459
G+ T + + ++ VY A V L G +V+
Sbjct: 171 GIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRL-GGTVI 229
Query: 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519
V E + D+ + ++++Y VT PT+ +++ E +Y SL V
Sbjct: 230 VME----HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAA 285
Query: 520 PINPSAWRWFFNVVGDSRCPISDTWW-QTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P P + G PI ++ TE GF W PG+ FG
Sbjct: 286 PCPPQVKEQMIDWWG----PIIHEYYAATEGLGFTACD-SEEWLAHPGTVGRAMFGD-LH 339
Query: 579 IVDEKGVE 586
I+D+ G E
Sbjct: 340 ILDDDGAE 347
|
Length = 511 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 3e-15
Identities = 92/398 (23%), Positives = 149/398 (37%), Gaps = 51/398 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ + G +Y +L +V ++A L +GV +GD V LP E L
Sbjct: 37 DKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYL 96
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN--------AVKRG--PKAIHLKD 325
ACARIGAV + + F L+ + KV + + A+ R K L+
Sbjct: 97 ACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQ 156
Query: 326 IV--DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
+V D D+ S D L R++T P
Sbjct: 157 VVVIDGDGDD------SFDRVLMTPE-----RDDT--------------PDAAAILAGPR 191
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWI 441
+D L+YTSG+TG+PKGV+HT + YA + DV +
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLF---SNIHPYAERLELGGGDVILMASPMAHQ 248
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TG Y P++ A+ V+ + + + R+ +++ + VT + + L R E
Sbjct: 249 TGFMYGLMMPLILNATAVLQD---IW-NPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
SL G PI + ++G W TE G +T A
Sbjct: 305 SGAPVP--SLFTFLCAGAPIPGILVERAWELLGALIV---SAWGMTENGAVTVTEPDDAL 359
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
+ + P GV+ ++D G ++ +G L ++
Sbjct: 360 EKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRG 397
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-15
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 50/190 (26%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+Y ++ +QV LAN L++ GVK GD+V + LP + L +A+ A GA +
Sbjct: 481 RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDT 540
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK-SGISVDVCLTYE 348
G+ D L + D +P ++IT+ D+ + + + L Y
Sbjct: 541 GYPDDRLKMMLEDARPSLLITTA-------------------DQLPRFADVPDLTSLCYN 581
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
A Q P ++ ++++TSGSTG+PKGV
Sbjct: 582 APLAP---------------QGAAPLQLSQP-------HHTAYIIFTSGSTGRPKGV--- 616
Query: 409 TGGYMV-HTA 417
MV TA
Sbjct: 617 ----MVGQTA 622
|
Length = 1296 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 89/384 (23%), Positives = 134/384 (34%), Gaps = 85/384 (22%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+TY +L + +LA+ L+ +G+++GD V I L E A R G ++ +
Sbjct: 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINW 68
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A + D KV+I S A L D E V + L
Sbjct: 69 HLTAAEIAYIVDDSGAKVLIVSAA---------LADTAAELAAEL---PAGVPLLLVVAG 116
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL--- 406
R + + P P E D +LY+SG+TG+PKG+
Sbjct: 117 PVPGFRSYEEALAAQ--------PDTPIADETAGAD------MLYSSGTTGRPKGIKRPL 162
Query: 407 -----HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT-YGPMLN--GASV 458
G M + P VY A H+ +G G +V
Sbjct: 163 PGLDPDEAPGMM---LALLGFGMYGGPDSVYLSPAP----LYHTAPLRFGMSALALGGTV 215
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
VV E D+ + ++++Y+VT PT+ +++ E RY SLRV
Sbjct: 216 VVMEKF----DAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAA 271
Query: 519 EPINPSAWRWFFNVVGDSRCPIS------DTWW---------QTETGGF-MITPLPGAWP 562
P CP+ D WW +E GG +IT W
Sbjct: 272 AP-----------------CPVEVKRAMID-WWGPIIHEYYASSEGGGVTVIT--SEDWL 311
Query: 563 QKPGSATFPFFGVQPVIVDEKGVE 586
PGS G I+DE G E
Sbjct: 312 AHPGSVGKAVLGEVR-ILDEDGNE 334
|
Length = 502 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 4e-15
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D TLTY+ L ++V LA+ L+ +G+ +G+ V IYL +E AM A G V +
Sbjct: 23 DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A + DC ++++TS+ D++ AL C + V
Sbjct: 83 LLKAEQVAHILADCNVRLLVTSSE---------RLDLLHPALPGCHDLRTLIIV-----G 128
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 406
A E W ++ +D D +LYTSGSTG+PKGV+
Sbjct: 129 DPAHASE--GHPGEEPASWPKLLALGDADPPHPVID-SDMAAILYTSGSTGRPKGVV 182
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 61/267 (22%), Positives = 96/267 (35%), Gaps = 56/267 (20%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+D + YTSG+TG PKG +HT ++ TA P V + G
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRT-VLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQG 142
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDGN 500
P+ GA++V+ R WD +++Y+VT + T+V L+
Sbjct: 143 SMNAPIYTGATLVLL---------TR-WDREAAARAIERYRVTHWTNIVTMVVDLLAHPR 192
Query: 501 EYVTRYSRKSLRVLGSVGEPINPS-AWRWF------FNVVGDSRCPISDTWWQTETGGFM 553
Y SL+V+G G + P+ A R + + + TET
Sbjct: 193 --FADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYE----------EGYGLTET---- 236
Query: 554 ITPL---PGAWPQKPGSATFPFFGVQPVIVD-----EKGVEIEGECSGYLCIKSSWPGAF 605
T P P KP P FG ++D E EGE + ++ P F
Sbjct: 237 HTCTHFNPPDRP-KPQCLGIPVFGTDARVIDPETGEELPPGEEGE----IVVRG--PQVF 289
Query: 606 RTLYG-DHERYETTYFKPFPGYYFTGD 631
+ + E+ ++ TGD
Sbjct: 290 KGYWNRPEATAESFIELDGKRFFRTGD 316
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 64/280 (22%), Positives = 106/280 (37%), Gaps = 36/280 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ AI + + +TY++L + + A L+ GV GD V ++LP + I
Sbjct: 48 QRPAIIFYGH------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFF 101
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
++GAVH V F L+ + D +V++ + L +V+ E +
Sbjct: 102 GILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQ---------LAPVVEQVRAETS 152
Query: 336 KSGISV----DVC---LTYENQSAMTRENTKWQDGRDIWWQDVVPKY---PTKCEVEWVD 385
+ V DV T R G D++P +
Sbjct: 153 LRHVIVTSLADVLPAEPTLP-LPDSLRAPRLAAAG----AIDLLPALRACTAPVPLPPPA 207
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADCGWITGH 444
+ L YT G+TG PKG HT MV+TA A V+ WI G
Sbjct: 208 LDALAALNYTGGTTGMPKGCEHTQ-RDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGE 266
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
++ P+ +GA++V+ D+ V++Y+VT
Sbjct: 267 NFGLLFPLFSGATLVLL----ARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-14
Identities = 91/409 (22%), Positives = 144/409 (35%), Gaps = 79/409 (19%)
Query: 210 IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME 269
+ + D+VA+ D LTY++L ++ +LA+YL G+ GD V IY +E
Sbjct: 12 VADAVPDRVALVCG------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIE 65
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI--------TSNAVKRGPKAI 321
AML + AV V + D L + D ++ + + R PK
Sbjct: 66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLR 125
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
L + D + ++ + + L + R D + P
Sbjct: 126 TLVVVEDGSGNDLLPGAVDYEDALA---AGSPER--------------DFGERSP----- 163
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGG-YMVHTATTFKYAFDYKPSDVYWCTADCGW 440
D L+LLYT G+TG PKGV+ + V + D
Sbjct: 164 ------DDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEP-IEDEEELAKRAAA 216
Query: 441 ITGHSYVTYGPMLNGASV------------VVFEGAPTYPDSGRSWDIVDKYKVT-IFYT 487
G P+++GA VV + D+ W +++ KV I
Sbjct: 217 GPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRF-DADEVWRTIEREKVNVITIV 275
Query: 488 ----APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS---AW-RWFFNVVGDSRCP 539
A L+ +L G Y SL + S G +PS A NVV
Sbjct: 276 GDAMARPLLDALEARG-----PYDLSSLFAIASGGALFSPSVKEALLELLPNVV------ 324
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE 588
++D+ +ET GF + G F G + V++DE G +E
Sbjct: 325 LTDSIGSSET-GFGGSGTVAKGAVHTGGPRFT-IGPRTVVLDEDGNPVE 371
|
Length = 533 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 63/247 (25%), Positives = 97/247 (39%), Gaps = 29/247 (11%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-----FDYKPSDVYWCTADCGWITGHSY 446
LLYTSG+TG+PKGV+HT H + P DV + ITG Y
Sbjct: 98 LLYTSGTTGEPKGVMHT------HNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLY 151
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
P+L GA+VV+ + + D R+ +++ ++ VT A + L+ +
Sbjct: 152 GLELPLLLGATVVLQD---RW-DPARALELIREHGVTFTMGATPFLADLLAAADA--AGP 205
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT-PLPGAWPQK- 564
SLRV G P+ R +G + TE ++T P K
Sbjct: 206 DLPSLRVFLCGGAPVPRELARRAAEALGAKVVRA---YGMTEVP--LVTVGTPDDPDDKR 260
Query: 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+ P GV+ IVD+ G ++ G L ++ P F + E
Sbjct: 261 AATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRG--PQLFLGYLDPPDNTEAFTDD--- 315
Query: 625 GYYFTGD 631
G++ TGD
Sbjct: 316 GWFRTGD 322
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y +L + + AN L +GV KG+ V LP EL +A L ++GAV+ +F+ F
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKR 316
+ + R+ + KV+IT+ +
Sbjct: 61 PEPIRDRLELGEAKVLITTPELYE 84
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y++L +Q ++AN L D+GVK GD V LP EL +A+LA R+GA++ +F F
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRG 317
++ R+ KVV+T NA RG
Sbjct: 61 PKAIEYRLGHSGAKVVVT-NAANRG 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 3e-13
Identities = 62/265 (23%), Positives = 91/265 (34%), Gaps = 64/265 (24%)
Query: 371 VVPKYPT-----------KCEVEWV----DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
VP YPT V +D L+YTSG+TG PKGV+ T ++
Sbjct: 57 PVPIYPTSSPEEVAYILNDSGARVVFVEDKPDDLATLIYTSGTTGNPKGVMLTHRN-LLA 115
Query: 416 TATTFKYAFDYKPSDVY------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
A P D + Y P+ +GA V E T +
Sbjct: 116 QAAALLEVIPLSPGDRVLSFLPLA------HVFEQRLGEYLPLSSGARVNFAESPETLLE 169
Query: 470 SGRSWDIVDKYKVTIFYTAPTL-------VRSLMRDGNEYVTRYSRK---------SLRV 513
D+ + + T+F+ P + + + + RK LR
Sbjct: 170 -----DLR-EVRPTVFFAVPRVWEKIYAGIEAKVAAA----GPLKRKLFRWALGGGRLRF 219
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
S G P+ P FF +G PI + + TET G PG + G+ P
Sbjct: 220 AVSGGAPLPPEVLE-FFRALG---IPILEGYGLTETSGVATVNRPGDI--RIGTVGKPLP 273
Query: 574 GVQPVIVDEKG-VEIEGE--CSGYL 595
GV+ V + E G + + G GY
Sbjct: 274 GVE-VRIAEDGEILVRGPNVMKGYY 297
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 5e-13
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY++L + + A YL+ +GVKKGD V + LP + PIA + GAV V
Sbjct: 22 GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNP 81
Query: 290 GFSSDSLAQRIMDCKPKVVIT 310
++ L ++ D KV+I
Sbjct: 82 LYTPRELEHQLNDSGAKVLIV 102
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 7e-13
Identities = 54/253 (21%), Positives = 89/253 (35%), Gaps = 25/253 (9%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
+ D + G+TG PK + T Y+ + + P VY H
Sbjct: 137 ELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC-GLDPGTVYLAVLP----AAH 191
Query: 445 SYVTYGP-----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
++ P +L G +VV+ P ++ ++++ KVT P L+ +
Sbjct: 192 NFTLSSPGLLGALLAGGTVVL---HHP-PSPDVAFPLIEREKVTHTALVPALLNLWL--E 245
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
+ SLRV+ G P++P R +G CP+ + E G T L
Sbjct: 246 AAEWDQADLSSLRVIQVGGAPLSPELARRVEERLG---CPLQQVFGMAE-GLVNYTRLDD 301
Query: 560 AWPQKPGSATFPFFGVQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ P + IVD++G + G L + P R Y +
Sbjct: 302 PPDVIMRTQGRPISPADEIRIVDDQGEPVPPGEVGELLTRG--PYTIRGYYR-APEHNAR 358
Query: 619 YFKPFPGYYFTGD 631
F G+Y TGD
Sbjct: 359 AFTD-DGFYRTGD 370
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 8e-13
Identities = 82/367 (22%), Positives = 139/367 (37%), Gaps = 92/367 (25%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++L + +LA+ L+ GV V I EL +A+LA + G + +
Sbjct: 2026 DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDP 2085
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
+ ++ LA + D +++T + +R P + L +
Sbjct: 2086 NYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGV-------------------ARLPLD 2126
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
RD W D YP + E+ +++YTSGSTG PKGV +
Sbjct: 2127 ---------------RDAEWAD----YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADC--------------GWITGHSYVTYGPMLN 454
G + H + Y+ S ADC W P+LN
Sbjct: 2168 HGALVAHCQAAGER---YELSP-----ADCELQFMSFSFDGAHEQWFH--------PLLN 2211
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM----RDGNEYVTRYSRKS 510
GA V++ + D + +D ++++ VTI P ++ L RDG +
Sbjct: 2212 GARVLIRDD--ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR-------PPA 2262
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGS 567
+RV GE + ++ R + + + + + TE ++TPL W PQ P
Sbjct: 2263 VRVYCFGGEAVPAASLRLAWEALRPVY--LFNGYGPTEA---VVTPL--LWKCRPQDPCG 2315
Query: 568 ATFPFFG 574
A + G
Sbjct: 2316 AAYVPIG 2322
|
Length = 5163 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-13
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 37/295 (12%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
TY+ + ++A L +G+++GD V++ LP E +A L +R GAV +
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPF 108
Query: 291 FSSDSLAQRIMDCKPKVVIT-SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A++ K++IT S V + + +D+ + CL +
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDD------PPEGCLHF-- 160
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
S +T+ + ++ +P EVE + +D + L Y+SG+TG PKGV+ T
Sbjct: 161 -SELTQAD-----------ENELP------EVE-ISPDDVVALPYSSGTTGLPKGVMLTH 201
Query: 410 GGYMVHTATTFKYA---FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
G + A + DV C I + V + GA++++ P
Sbjct: 202 KGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIM---PK 258
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
+ + G +++ ++KVTI P +V ++ + + V +Y S+R++ S P+
Sbjct: 259 F-EIGALLELIQRHKVTIAPFVPPIVLAIAK--SPVVEKYDLSSIRMVLSGAAPL 310
|
Length = 537 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 23/247 (9%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK+A+ ++ G A+ TYS L +LAN+L G++ GD V LP E I L
Sbjct: 38 DKIAV---VDNHG--ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYL 92
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
AC ++GAV + + L + C+ K+ P VD L
Sbjct: 93 ACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFF-------APTLFKQTRPVDLIL-PLQ 144
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + + + T + Q ++ Y ++ +L+T
Sbjct: 145 NQLPQLQQIVGVDKLAPATSSLSLSQ---------IIADYEPLTTAITTHGDELAAVLFT 195
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+ G PKGV+ T ++ + + + DV+ A G TG + P L G
Sbjct: 196 SGTEGLPKGVMLTHNN-ILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254
Query: 456 ASVVVFE 462
A V+ +
Sbjct: 255 ARSVLLD 261
|
Length = 547 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 20/253 (7%)
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438
C+ A+D + +TSG+TG PKG +H + ++ P DV+ +
Sbjct: 139 CDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPL 198
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G + P+ GAS V+ E A P + +++ TI +TAPT R+++
Sbjct: 199 AFTFGLGGLVLFPLRFGASAVLLEQAT--PP--LLLKAIQEHRATILFTAPTAYRAML-- 252
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
V + SLR S GE + W+ ++ G I D TE I+
Sbjct: 253 --IKVKAFDISSLRKCVSAGETLPAKVWQDWYERTG---LKIIDGIGATEMLHIFIS--A 305
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
KPG+ P G + IVD++G E+ +G L ++ P R L + ++
Sbjct: 306 NEENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLAVRG--PTGCRYLDDERQQEYVR 363
Query: 619 YFKPFPGYYFTGD 631
G+ TGD
Sbjct: 364 -----DGWNVTGD 371
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 67/254 (26%), Positives = 101/254 (39%), Gaps = 24/254 (9%)
Query: 224 ANDPGVDAT------LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277
P A L+ ++L V +LA +L GV++GD V ++LP +E + LAC
Sbjct: 21 RARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLAC 80
Query: 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKS 337
AR+GA V + S +A + + + ++ K A L + AL
Sbjct: 81 ARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALP--PLR 138
Query: 338 GISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY-TS 396
I+V V + A G + + P E D LL+ TS
Sbjct: 139 AIAV-VDDAADATPAPAP-------GARVQLFALPDPAPPAAAGERAADPDAGALLFTTS 190
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD-CGWITGHSYVTYGPMLNG 455
G+T PK VLH ++ A A+ Y P V CG + G S + G + G
Sbjct: 191 GTTSGPKLVLHRQAT-LLRHARAIARAYGYDPGAVLLAALPFCG-VFGFSTLL-GALAGG 247
Query: 456 ASVV---VFEGAPT 466
A +V VF+ A T
Sbjct: 248 APLVCEPVFDAART 261
|
Length = 540 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 3e-12
Identities = 80/368 (21%), Positives = 141/368 (38%), Gaps = 82/368 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ ++ LTY++L ++ +LA+ L GV V I + E+ + +L
Sbjct: 4566 DAVAVVFDEE------KLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLL 4619
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT-SNAVKRGPKAIHLKDIVDAALDEC 334
A + G + + + + LA + D +++T S+ ++R P
Sbjct: 4620 AVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP-------------- 4665
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G++ L + RD W+ +P + ++ +++Y
Sbjct: 4666 --DGLA---SLALD---------------RDEDWEG----FPAHDPAVRLHPDNLAYVIY 4701
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV------- 447
TSGSTG+PKGV + G + H T + Y T D + S+
Sbjct: 4702 TSGSTGRPKGVAVSHGSLVNHLHAT---------GERYELTPDDRVLQFMSFSFDGSHEG 4752
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYS 507
Y P++NGASVV+ + D R + + +++VT+ P ++ L
Sbjct: 4753 LYHPLINGASVVI--RDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAER---DGE 4807
Query: 508 RKSLRVLGSVGEPINPS----AWR-----WFFNVVGDSRCPISDTWWQTETGGFMI---- 554
SLRV GE + + AWR + FN G + ++ W+ G
Sbjct: 4808 PPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYM 4867
Query: 555 ---TPLPG 559
TPL
Sbjct: 4868 PIGTPLGN 4875
|
Length = 5163 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 89/372 (23%), Positives = 135/372 (36%), Gaps = 62/372 (16%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF-AG 290
TLT+ +L ++ LA L+ + + + V I A+LA RIGA ++
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGA-DILLLNTS 126
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
F+ +LA+ + VI VD AL +C ++ V
Sbjct: 127 FAGPALAEVVTREGVDTVIYDE---------EFSATVDRALADCPQATRIVA-------- 169
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT-T 409
W D +V+ E + + LL TSG+TG PKG +
Sbjct: 170 ---------WTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILL-TSGTTGTPKGARRSGP 219
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN--GASVVVFEGAPTY 467
GG T K D P W V PM + G S +V +
Sbjct: 220 GGIG-----TLKAILDRTP-----------WRAEEPTVIVAPMFHAWGFSQLVLAASLAC 263
Query: 468 P-------DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
D + D++D+++ T P + +M E RYS +SLR + G
Sbjct: 264 TIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSR 323
Query: 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI-TPLPGAWPQKPGSATFPFFGVQPVI 579
+ P F + GD I + + TE G MI T P P +A P G + I
Sbjct: 324 MRPDVVIAFMDQFGDV---IYNNYNATEAG--MIATATPADLRAAPDTAGRPAEGTEIRI 378
Query: 580 VDEKGVEI-EGE 590
+D+ E+ GE
Sbjct: 379 LDQDFREVPTGE 390
|
Length = 537 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 55/299 (18%)
Query: 219 AIYWEANDPGVDA--------TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLME 269
I+ N G A +++YS+L V +A L +GV++GD V++ LP +
Sbjct: 45 FIFSHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVY 104
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS--NAVKRGPKAIHLKDIV 327
P+ LA +G + + + S + +R++DC + TS N K P
Sbjct: 105 FPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP--------- 155
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQ-----DVVPKYPTKCEVE 382
+ V V EN ++K + + D VPK
Sbjct: 156 -----------LGVPVIGVPENYD----FDSKRIEFPKFYELIKEDFDFVPKPV------ 194
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGY--MVHTATTFKYA-FDYKPSD-VYWCTADC 438
+ +D ++Y+SG+TG KGV+ T MV F+ + ++Y SD VY
Sbjct: 195 -IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
I G S G + G+++VV D+ ++D++KVT F P ++ +L +
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRF----DASDMVKVIDRFKVTHFPVVPPILMALTK 308
|
Length = 560 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-12
Identities = 69/333 (20%), Positives = 135/333 (40%), Gaps = 73/333 (21%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTY +L ++ +LA+ L +GV V I + +E+ + +LA + G + + +
Sbjct: 1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYP 1659
Query: 293 SDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+ LA I D ++++T + + R P L+ +V D+
Sbjct: 1660 RERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQEDD------------------ 1701
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG 411
W +G + V + ++ +++YTSGSTG+PKG + G
Sbjct: 1702 --------WLEGYS----------DSNPAVN-LAPQNLAYVIYTSGSTGRPKGAGNRHGA 1742
Query: 412 YMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEGA 464
+ T + A+ +DV + S+ + P++NGA +V+ A
Sbjct: 1743 LVNRLCAT-QEAYQLSAADV--------VLQFTSFAFDVSVWELFWPLINGARLVI---A 1790
Query: 465 P--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR-KSLRVLGSVGEPI 521
P + D + ++++ +VT + P++++ L+ + + SLR + GE +
Sbjct: 1791 PPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL----QMDEQVEHPLSLRRVVCGGEAL 1846
Query: 522 NPSAWR-WF--------FNVVGDSRCPISDTWW 545
A R W FN+ G + + T W
Sbjct: 1847 EVEALRPWLERLPDTGLFNLYGPTETAVDVTHW 1879
|
Length = 3956 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 86/424 (20%), Positives = 154/424 (36%), Gaps = 80/424 (18%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T++Q+ Q ++A L+ +G++ GD + I E IA LA G V ++ ++
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD--ECAKSGISVDVCL-TYENQ 350
+++ + K + LD + K+G+ +
Sbjct: 68 ETIRYVLEHSDAKALFV------------------GKLDDWDAMKAGVPEGLPTIILFPY 109
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
S + W D++ + ED ++YTSG+TG+PKGV+ + G
Sbjct: 110 STLKDHYK---------WDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFG 160
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470
A P+D I V G + +GA V E T+
Sbjct: 161 A-FAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLDTFAAD 219
Query: 471 GRSWDIVDKYKVTIFYTAPTL-------VRSLMRDG-----------NEYVTRYSRKSL- 511
+ + + T+F++ P L + + + + V + K L
Sbjct: 220 ------LQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLG 273
Query: 512 ----RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
R+ GS P+ P+ W+ +G PI + + TE + PG ++ G+
Sbjct: 274 LDQARLAGSGAAPMPPALIAWYRK-LG---LPICEGYGMTENFAYSTLNYPGD--RRIGT 327
Query: 568 ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
P GV+ I + +GE + I+S PG Y D E+ + + G+
Sbjct: 328 VGKPIPGVELKISE------DGE----ILIRS--PGLMSGYYKDPEKTAEAFTE--DGWL 373
Query: 628 FTGD 631
TGD
Sbjct: 374 HTGD 377
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 5e-12
Identities = 67/311 (21%), Positives = 107/311 (34%), Gaps = 76/311 (24%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ TLTY +L ++ +A L+ GV GD V + +P E +A+
Sbjct: 1 PDATAVIDG------AGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAV 54
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L GA + D A+R I + A
Sbjct: 55 LGILLAGAA----YVPIDPDQPAERRAA------ILARA------GARAVLTDPGLAQPE 98
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ V D VD +D ++++
Sbjct: 99 EAPDLLVVAD-------------------------DAAAAESPAPPPPRVDPDDLAYVIF 133
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH----SYVTYG 450
TSGSTG+PKGV+ T V+T F P+D + H Y +G
Sbjct: 134 TSGSTGEPKGVMITHRA-AVNTILDVNRRFGVGPADRVLALSAL-----HFDLSVYDIFG 187
Query: 451 PMLNGASVVVFEGAPTYPDSGR-----SW-DIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
+ GA++V+ PD R W ++V ++ VT++ + P L+ L+ Y
Sbjct: 188 ALSAGAALVL-------PDEARRRDPDHWAELVQRHGVTVWNSVPALMDMLL----TYAE 236
Query: 505 RYSR--KSLRV 513
+R SLR+
Sbjct: 237 DAARLLPSLRL 247
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 8e-12
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+++L ++ + AN+LKD+GV +GD V + LP + EL +L C ++GAV
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 294 DSLAQRIMDCKPKVVITS 311
+ R+ + ++TS
Sbjct: 62 KDIRYRLERAGARAIVTS 79
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 66/343 (19%), Positives = 117/343 (34%), Gaps = 87/343 (25%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++L ++ +LA+ L IGV V + + +E+ +A+LA + G + +
Sbjct: 3118 DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
+ + LA I D K+++T + ++ P + LD
Sbjct: 3178 EYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALT---LD---------------- 3218
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
R Y V E+ +++YTSGSTGKPKGV
Sbjct: 3219 ---------------RLDLN-----GYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVR 3258
Query: 409 TGGYMVH----------TATT-----FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
G H A ++FD W ++
Sbjct: 3259 HGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLW-----------------TLI 3301
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
G +VV + P+ W + ++++I P ++ D SL +
Sbjct: 3302 CGGCLVVRDNDLWDPE--ELWQAIHAHRISIACFPPAYLQQFAEDAG----GADCASLDI 3355
Query: 514 LGSVGEPINPSAW---------RWFFNVVGDSRCPISDTWWQT 547
GE + P+A+ R N G + ++ T W+
Sbjct: 3356 YVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKC 3398
|
Length = 3956 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 98/447 (21%), Positives = 149/447 (33%), Gaps = 102/447 (22%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+Y++LL++ ++ L+ +G+K GD+VI+ L + A AC V GF
Sbjct: 39 FQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWAC---------VLGGF 89
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+A P NA K + + L V LT
Sbjct: 90 VPVPVA------VPPTYDEPNAAVA--KLRN----IWELLGSP--------VILTDAALV 129
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLHTT 409
A + + + +DP LL TSGSTG PK V+ T
Sbjct: 130 AALAGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTH 189
Query: 410 GGYMVHTATTFKYAFDYKPSDVY--WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
+ +A T + + P DV W D + G + + G +
Sbjct: 190 RNILARSAGTVQVN-GFTPDDVSLNWMPLD--HVGGIVMLHLRDVYLGCQQIHVPTDYIL 246
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT--RYSRKSLRVLGSVGEPINPSA 525
D R D++D+Y+VTI + AP +L+ D E + + SLR + + GE +
Sbjct: 247 ADPLRWLDLIDRYRVTITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKT 305
Query: 526 WRWF------FNVVGDSRCPISDTWWQTETGGFMI--------------------TPLPG 559
R F + + D+ P + +ET + PL
Sbjct: 306 IRRFLELLAPYGLPADAIRP---AFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRF 362
Query: 560 AWPQKPGSATF-----PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHER 614
A P + TF P GV IVDE G + G L ++
Sbjct: 363 AAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRG--------------- 407
Query: 615 YETTYFKPFPGYY---------FTGDG 632
T GYY FT DG
Sbjct: 408 -PTV----TSGYYRNPEANAEAFTEDG 429
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 90/432 (20%), Positives = 156/432 (36%), Gaps = 87/432 (20%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAM 274
D++AI + +TY QL + V ++A YL ++ VKKG+ + I +E + +
Sbjct: 17 DRIAII------TEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLL 70
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A A++ + + + + L ++ D V+ K + AL
Sbjct: 71 FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVE------------KTFQNMALSMQ 118
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
S + + +T + D + V K + + Y
Sbjct: 119 KVSYVQRVISITSLKEIE--------DRKID----NFVEK----------NESASFIICY 156
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TGKPKG + T M A +A D D I G + +
Sbjct: 157 TSGTTGKPKGAVLTQEN-MFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFA 215
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G ++V P + ++ +++K+KVT+ PT+ ++L+
Sbjct: 216 GGVIIV----PRKFEPTKALSMIEKHKVTVVMGVPTIHQALIN----------------- 254
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPI-------------SDTWWQTETGG--FMITPLPG 559
S E N + RWF+N G + CP + TET FM++
Sbjct: 255 CSKFETTNLQSVRWFYN--GGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDA 312
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619
+K GS P ++DE ++E G L I+ P + + + E T
Sbjct: 313 R--RKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRG--PNVMKEYWNRPDATEETI 368
Query: 620 FKPFPGYYFTGD 631
G+ TGD
Sbjct: 369 QD---GWLCTGD 377
|
Length = 496 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+ QL +LAN L+++GV++GD V +YLP E IA LA ++GAV + F
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 294 DSLAQRIMDCKPKVVITSNA 313
D++ R+ D +V++T +
Sbjct: 68 DAVEHRLRDSGARVLVTDGS 87
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-11
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ + D +LTY +L ++ +LA+YL+ GV GD V I L E+ +A+L
Sbjct: 2 DAVAVVFG------DQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAIL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A + GA + + + ++ LA + D K+++T
Sbjct: 56 AVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 104/461 (22%), Positives = 161/461 (34%), Gaps = 121/461 (26%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
G K A+ +E + GV +Y +L +++ + AN +G++KGD V ++L E
Sbjct: 21 GHKTALIFE-SSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCW 79
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A+IGA+ + A + A + + + +++TS + I +D
Sbjct: 80 FGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED--------- 130
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L +TR DG + Q + T C + +D +L+
Sbjct: 131 -------ATPL---RHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILF 180
Query: 395 TSGSTGKPKGVLHTT-----GGYMVHTATTFKYAFDYKPSDVYW-----------CTADC 438
TSG+T +PKGV+ T GY + DVY CTA
Sbjct: 181 TSGTTSRPKGVVITHYNLRFAGYYSAWQCALRD------DDVYLTVMPAFHIDCQCTAAM 234
Query: 439 GWITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRS-WDIVDKYKVTIFYTAPTLVRSLM 496
+ GA+ V+ E Y S R+ W V KY+ TI P ++R+LM
Sbjct: 235 ------------AAFSAGATFVLLE---KY--SARAFWGQVCKYRATITECIPMMIRTLM 277
Query: 497 -------------RD--------GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
R+ E R +R+L S G
Sbjct: 278 VQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSYG----------------- 320
Query: 536 SRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
TET +I PG WP S P F + I D+ +
Sbjct: 321 ----------MTETIVGIIGDRPGDKRRWP----SIGRPGFCYEAEIRDDHNRPLPAGEI 366
Query: 593 GYLCIKSSWPGA--FRTLYGDHERYETTYFKPFPGYYFTGD 631
G +CIK PG F+ Y D + + G+ TGD
Sbjct: 367 GEICIKGV-PGKTIFKEYYLDPKATAKV-LEA-DGWLHTGD 404
|
Length = 517 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 60/272 (22%), Positives = 95/272 (34%), Gaps = 90/272 (33%)
Query: 382 EWVDAEDPLF------------LLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDY 426
E ++ E P + L YTSG+TG PKGV+++ ++HT A +
Sbjct: 145 ELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPD--SLGL 202
Query: 427 KPSDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
SD W + G V G L+ AS++ D
Sbjct: 203 SESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLL---------------D 247
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYV--TRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
++++ KVT+ PT+ L+ Y+ SLR + VV
Sbjct: 248 LIEEEKVTVSAGVPTIWLGLL----NYLEANGKDLSSLRRV-----------------VV 286
Query: 534 GDSRCPIS--DTWWQ-----------TETGGF-MITPLPGAWPQKPGSATF--------P 571
G S P S + + TET ++ L P P
Sbjct: 287 GGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRP 346
Query: 572 FFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
GV+ IVD++G E+ +G+ G L ++ W
Sbjct: 347 VPGVELRIVDDEGNELPWDGKTVGELVVRGPW 378
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 79/327 (24%), Positives = 131/327 (40%), Gaps = 73/327 (22%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
D++A+ W D + T+ ++ +V LA L GV+KGD ++++ ++ +
Sbjct: 20 FPDRIALVWG------DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFES 73
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
M A R+GAV V F R +V + A G +A+ I A E
Sbjct: 74 MFAAFRLGAV--WVPTNF-------RQT--PDEVAYLAEA--SGARAM----ICHADFPE 116
Query: 334 ----CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAED 388
+ + + A G D + +V ++ + VD +D
Sbjct: 117 HAAAVRAASPDLTHVVAIGGARA----------GLDY--EALVARHLGARVANAAVDHDD 164
Query: 389 PLFLLYTSGSTGKPK-GVL-HTTGGYMV--HTATTFKYAFDYKPSDVYWCTADCGWITGH 444
P + +TSG+TG+PK VL H +++ H A D P D
Sbjct: 165 PCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLA-------DLMPGTTE---QDA------ 208
Query: 445 SYVTYGPMLNGASV----VVFEGAPTYP------DSGRSWDIVDKYKVTIFYTAPTLVRS 494
S V P+ +GA + V GA T D W +V++++VT +T PT+++
Sbjct: 209 SLVV-APLSHGAGIHQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPI 521
L+ V RY SLR + G P+
Sbjct: 268 LVEH--PAVDRYDHSSLRYVIYAGAPM 292
|
Length = 528 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 62/269 (23%), Positives = 94/269 (34%), Gaps = 58/269 (21%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA----DCGW 440
+DP +++YTSGSTGKPKGV+ T + + +P D A D
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRN-ICNFLRAEGAILGIRPGDRVLQFASIAFDVSI 155
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDI---VDKYKVTIFYTAPTLVRSLMR 497
+ + +L G ++V P+ R D+ +++ +VT+ + P+L+ L
Sbjct: 156 LE-----IFTTLLAGGTLV------IPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL-- 202
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPS-AWRW-----FFNVVGDSRCPISDTWWQTETGG 551
SLR L GE + RW N G + ++ T
Sbjct: 203 ------DPEDVPSLRTLILGGEACPQALVDRWSKPRRLLNTYGPTEATVTATA------- 249
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLY 609
PG KP + P ++D + G G LCI PG R
Sbjct: 250 --SRLTPG----KPVNIGRPLPNYTCWVLDPDLEPLVPIGA-VGELCIGG--PGVARGYL 300
Query: 610 GDHERYETTYFK-PFPGY------YFTGD 631
E + PF Y TGD
Sbjct: 301 NRPELTAEKFIPDPFWLNNPGGRIYRTGD 329
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 32/272 (11%)
Query: 373 PKYPTKCEVEWV--DAE-----DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425
P YP E+ ++ D++ DP ++YTSG+TG+PKGV+ T G + A A+
Sbjct: 68 PSYPAA-ELAYILSDSQPSLLVDPALIIYTSGTTGRPKGVVLTHGN-LAANARALVEAWR 125
Query: 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIF 485
+ SDV + G + P+ GASV P + D + ++T+F
Sbjct: 126 WTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFL---PRF-DPQERDALRLLPRITVF 181
Query: 486 YTAPTL-VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544
PT+ R L + + ++LR+ S + + G + + +
Sbjct: 182 MGVPTIYTRLLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGH---TLLERY 238
Query: 545 WQTETGGFMIT--PLPGAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCIKSSW 601
TETG M PL G ++PG+ P GV+ IVDE G E + G + ++
Sbjct: 239 GMTETG--MALSNPLDG--ERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG-- 292
Query: 602 PGAFRTLYGDHERYETTYFKPFP--GYYFTGD 631
P F + E + F G++ TGD
Sbjct: 293 PNVFSEYWNKPEATA----EAFTEDGWFKTGD 320
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 94/429 (21%), Positives = 148/429 (34%), Gaps = 90/429 (20%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+LTY +LL L+ +K + K+G+ + I LP + +A LA G V V F
Sbjct: 7 SLTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKV--PVMLNF 63
Query: 292 --SSDSLAQRIMDCKPKVVITSNA------------VKRGPKAIHLKDIVDAALDECAKS 337
+ L K VITS A + G + ++L+D+ ++
Sbjct: 64 TAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDL---------RA 114
Query: 338 GIS-VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTS 396
IS D + +A +DP +L+TS
Sbjct: 115 KISKADKLKAF--LAAKLPPALLR--------------LFLAG----AKPDDPAVILFTS 154
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG-----HSY----V 447
GS G PKGV+ + + D DV + G H++
Sbjct: 155 GSEGLPKGVVLSHRNLL-ANIDQIAAVIDLNTEDV---------LLGALPLFHAFGLTVT 204
Query: 448 TYGPMLNGASVVVFEGAPTYPD--SGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
P+L G VV YP+ + +++ YK TI PT +R R
Sbjct: 205 LLLPLLTGLRVV------YYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR----NAH 254
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
SLR++ + E + + F G I + + TE + P K
Sbjct: 255 PEDFSSLRLVVAGAEKLPEATRELFEEKFG---IRILEGYGATECSPVISVNTPMG--NK 309
Query: 565 PGSATFPFFGVQPVIVDEKGVE--IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
PG+ P G++ IV + E GE G L ++ P + E+
Sbjct: 310 PGTVGRPLPGIEVRIVSPETHEELPIGE-GGLLLVRG--PNVMSGYLNNEEKTSEVE-VL 365
Query: 623 FPGYYFTGD 631
G+Y TGD
Sbjct: 366 GDGWYDTGD 374
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-11
Identities = 76/270 (28%), Positives = 108/270 (40%), Gaps = 46/270 (17%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
T T+ +L +V LA L GV GD V+I + E ++LA +GA+ V
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ +A + DC VV+T A+ P A ++DIV G S D L YE+
Sbjct: 101 LTPPEIAFLVSDCGAHVVVTEAAL--APVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDL 158
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED-PLFLLYTSGSTGKPKG-VL-H 407
A + G D+ D P ++YTSG+TG+PKG VL H
Sbjct: 159 LA--------EAGPAHAPVDI--------------PNDSPALIMYTSGTTGRPKGAVLTH 196
Query: 408 TTGGYMVHTATTFKYAFDY-KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
+ A T SDV + I G + G +L GAPT
Sbjct: 197 AN---LTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLL---------GAPT 244
Query: 467 --YP----DSGRSWDIVDKYKVTIFYTAPT 490
YP D G+ D+++ KVT + P
Sbjct: 245 VIYPLGAFDPGQLLDVLEAEKVTGIFLVPA 274
|
Length = 542 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 8e-11
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D +A+ + D TL+Y++L ++ QLA L+ +GV GD V + L +L A+L
Sbjct: 2 DAIALRDD------DRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A + GA + + + ++ L + D +P +++T
Sbjct: 56 AILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 87/409 (21%), Positives = 144/409 (35%), Gaps = 88/409 (21%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A+ D LTY QL ++ + + +G+ GDAV + E+ +A+
Sbjct: 27 DRPALVLG------DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA--VKRG----PKAIHLKDIVDA 329
A G + + S D A + D +I A V+R + LK ++
Sbjct: 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVL-- 138
Query: 330 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389
L DG D+ K+ V D
Sbjct: 139 TLGPVP--------------------------DGVDLL--AAAAKFGPAPLVAAALPPDI 170
Query: 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTY 449
L YT G+TGKPKGV+ T + A A+ W ++
Sbjct: 171 AGLAYTGGTTGKPKGVMGTHRS-IATMAQ--------------IQLAEWEWPADPRFLMC 215
Query: 450 GP------------MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
P +L G +V+V D +++ ++T + PT++ +L+
Sbjct: 216 TPLSHAGGAFFLPTLLRGGTVIVLAKF----DPAEVLRAIEEQRITATFLVPTMIYALL- 270
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI-SDTWWQTETGGFMITP 556
D + TR SL + P++P G PI + + QTE IT
Sbjct: 271 DHPDLRTR-DLSSLETVYYGASPMSPVRLAEAIERFG----PIFAQYYGQTEAPMV-ITY 324
Query: 557 LP-----GAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKS 599
L P++ S P G++ ++DE G E+ GE G +C++
Sbjct: 325 LRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGE-VGEICVRG 372
|
Length = 524 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-10
Identities = 69/344 (20%), Positives = 134/344 (38%), Gaps = 94/344 (27%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
TL Y++L ++ +LA+ L + GV V + + +E+ +A+LA + G + + +
Sbjct: 536 TLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEY 595
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
++ LA + D +++++ + HL + A +G+ V + L
Sbjct: 596 PAERLAYMLEDSGVQLLLSQS---------HLGRKLPLA------AGVQV-LDL------ 633
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG- 410
D W + Y + ++ E+ +++YTSGSTGKPKG +
Sbjct: 634 ----------DRPAAW----LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 411 ----------------GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
G V T F +FD + +W P+++
Sbjct: 680 LSNRLCWMQQAYGLGVGDTVLQKTPF--SFDVSVWEFFW-----------------PLMS 720
Query: 455 GASVVVFEGAPTYPDSGRS----WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510
GA +VV A P R +++++ V + P+++++ ++D + S S
Sbjct: 721 GARLVV---AA--PGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----ASCTS 771
Query: 511 LRVLGSVGEPINPSAW------RW---FFNVVGDSRCPISDTWW 545
LR + GE + A +N+ G + I T W
Sbjct: 772 LRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHW 815
|
Length = 5163 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 69/297 (23%), Positives = 97/297 (32%), Gaps = 78/297 (26%)
Query: 373 PKYPT----------KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
P YP + D +D +++YTSGSTG+PKGV A
Sbjct: 81 PAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRN-----AAAL-- 133
Query: 423 AFDYKPSDVYWCTADCG--WITGHSYVT-----------YGPMLNGASVVVFEGAPTYPD 469
+ W A + G T + P+ G VV+ + A PD
Sbjct: 134 --------LQWAAAVFSAEELAGVLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD 185
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
K +VT+ T P+ R L+R S+R + GEP+ +
Sbjct: 186 LPA------KAEVTLINTVPSAARELLRHDA------LPSSVRTVNLAGEPLPQELVQRL 233
Query: 530 ---------FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580
+N+ G P DT + T + P P S P G Q ++
Sbjct: 234 YALPQVERVYNLYG----PSEDTTYST---YAEVEPGASRTP----SIGRPLAGTQAYVL 282
Query: 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGD----HERYETTYFKPFPG--YYFTGD 631
D + G L I G R G ER+ F PG Y TGD
Sbjct: 283 DAHLQPVPVGVPGELYI--GGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGD 337
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 62.1 bits (150), Expect = 4e-10
Identities = 47/292 (16%), Positives = 85/292 (29%), Gaps = 32/292 (10%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TY+++ Q+ +L L+ +GV GD V A A +GAV
Sbjct: 22 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANP 81
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
S +A + + KV+ + D L ++ +
Sbjct: 82 RLSPKEIAYILNHAEDKVL-----------------LFDPNLLPLVEAIRGELKTVQ-HF 123
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT- 408
+ K +G + + V + YT+G+TG PKGV+++
Sbjct: 124 VV----MDEKAPEGYLA----YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSH 175
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
+ A + DV + ++ V+
Sbjct: 176 RALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP----RL 231
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
D ++ D VT PT V + D E + R++
Sbjct: 232 DPASLVELFDGEGVTFTAGVPT-VWLALADYLESTGHRLKTLRRLVVGGSAA 282
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 7e-10
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TY++L ++V +LA L +GV+ GD V + L E A A ++GAV +
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 290 GFSSDSLAQRIMDCKPKVVITSNA 313
+ LA + ++++ A
Sbjct: 61 ALRGEELAHILDHSGARLIVVDTA 84
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 49/242 (20%)
Query: 208 RNIEAGLGDKVAIYWEA-----NDPGVD---ATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
+++ G V +Y A + P +D AT TY++L +QV + A L+ +GV+ GD
Sbjct: 25 HDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDR 84
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRG 317
V I LP + +A A R+GAV VV +++ L D +V I + K
Sbjct: 85 VAIVLPNCPQHIVAFYAVLRLGAV--VVEHNPLYTAHELEHPFEDHGARVAIVWD--KVA 140
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW---------QDGRD--- 365
P L+ L+ +SV++ +AM + + R
Sbjct: 141 PTVERLRR--TTPLETI----VSVNMI------AAMPLL-QRLALRLPIPALRKARAALT 187
Query: 366 ------IWWQDVV----PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
+ W+ +V + +D +LYTSG+TGKPKG T +
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247
Query: 416 TA 417
A
Sbjct: 248 AA 249
|
Length = 573 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 51/283 (18%), Positives = 104/283 (36%), Gaps = 54/283 (19%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+ L + LA LK G++ G V + +E+ + + AC +GA +++ +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ ++ D ++++T + KD +LD +G
Sbjct: 61 NERTNQLEDLDVQLLLT-------DSLLEEKDFQADSLDRIEAAG--------------- 98
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+Y T + + L++TSG+TGKPK V HT +
Sbjct: 99 --------------------RYETSLSASFNM-DQIATLMFTSGTTGKPKAVPHTFRNHY 137
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
A K + D + + I+G S + + ++ GA++ + + +
Sbjct: 138 AS-AVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFNQLLEM--- 192
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516
+ +VT PT + L+ +G + + + + GS
Sbjct: 193 ---IANERVTHISLVPTQLNRLLDEGG---HNENLRKILLGGS 229
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-10
Identities = 79/386 (20%), Positives = 134/386 (34%), Gaps = 75/386 (19%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D ++ +L Q+ + A L +GV+ GD V + + A A R+GA V
Sbjct: 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD--------ECAKS-GIS 340
F + +A + D +V+I + G L + A + E A + IS
Sbjct: 69 HFKPEEIAYILEDSGARVLIAHADLLHG-----LASALPAGVTVLSVPTPPEIAAAYRIS 123
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
+ A+ E W ++ + VP+ P ++YTSG+TG
Sbjct: 124 PALLTP--PAGAIDWE--GWLAQQEPYDGPPVPQ--------------PQSMIYTSGTTG 165
Query: 401 KPKGVLHT--TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGA-- 456
PKGV T + KP T GP+ + A
Sbjct: 166 HPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLT--------------GPLYHSAPN 211
Query: 457 ----------SVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
V+V + P + D +++++++T + PT+ L++ E +Y
Sbjct: 212 AYGLRAGRLGGVLVLQ--PRF-DPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268
Query: 507 SRKSLRVLGSVGEPINPSAWR----WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
SLR + P R W+ V I + + TE+G +
Sbjct: 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPV-------IYEYYGSTESGA-VTFATSEDAL 320
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIE 588
PG+ G + VDE G +
Sbjct: 321 SHPGTVGKAAPGAELRFVDEDGRPLP 346
|
Length = 509 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 9e-10
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ AI +E + +T+ +L + V +A L +GVKKGD V + + ME+ + +
Sbjct: 17 DRTAIEFE------EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIH 70
Query: 276 ACARIGAVHSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
A ++GAV V S + L ++ D + K +IT D +A L
Sbjct: 71 ALQQLGAV--AVLLNTRLSREELLWQLDDAEVKCLITD-------------DDFEAKLIP 115
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
GISV + +E + Q E D ++ ++
Sbjct: 116 ----GISVK----FAELMNGPKEEAEIQ--------------------EEFDLDEVATIM 147
Query: 394 YTSGSTGKPKGVLHTTG 410
YTSG+TGKPKGV+ T G
Sbjct: 148 YTSGTTGKPKGVIQTYG 164
|
Length = 483 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 70/315 (22%), Positives = 115/315 (36%), Gaps = 84/315 (26%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D T+ +L + ++AN+ + G + GD V +++ +E L A+IG +++ +
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+SL I K K +I + L ++ + E
Sbjct: 61 NLRLESLLHCITVSKAKALIFN----------LLDPLLTQSSTE---------------- 94
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
P + V+ D LF +YTSG+TG PK +
Sbjct: 95 --------------------------PPSQDD--VNFRDKLFYIYTSGTTGLPKAAVIVH 126
Query: 410 GGYMVHTATTFKYAFDYKPSDV-YWC-----TADCGWITGHSYVTYGPMLNGASVVV--- 460
Y A + YAF +P DV Y C +A G I G +L+G++VV+
Sbjct: 127 SRYYRIAAGAY-YAFGMRPEDVVYDCLPLYHSA--GGIMGVGQA----LLHGSTVVIRKK 179
Query: 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
F + WD KY TI + R L+ + + +K V +VG
Sbjct: 180 FSAS-------NFWDDCVKYNCTIVQYIGEICRYLL---AQPPSEEEQKH-NVRLAVGNG 228
Query: 521 INPSAWRWF---FNV 532
+ P W F F +
Sbjct: 229 LRPQIWEQFVRRFGI 243
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ +LTY +L + AN L+ +GV GD V++ LP EL A LAC + GAV +
Sbjct: 8 EQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNP 67
Query: 290 GFSSDSLAQRIMDCKPKVVITS 311
+ L + D +++T
Sbjct: 68 LLTPQDLEHILDDSGAALLVTE 89
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 85/398 (21%), Positives = 132/398 (33%), Gaps = 79/398 (19%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
TY++ + A+ L GVK+GD V + +E L CA +GA+
Sbjct: 47 WTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI--------- 97
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS---VDVCLTYEN 349
+ N RGP+ H+ SG V+ L
Sbjct: 98 ---------------AVPINTALRGPQLEHI----------LRNSGARLLVVEAALLAAL 132
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV---------EWVDAE-----DPLFLLYT 395
++A + +W D A D +LYT
Sbjct: 133 EAADPGD----LPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYT 188
Query: 396 SGSTGKPKGVLHTTGGYM---VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
SG+TG KGV + ++A + DV + T + + +
Sbjct: 189 SGTTGPSKGVCCPHAQFYWWGRNSAE----DLEIGADDVLYTTLPLFHTNALN-AFFQAL 243
Query: 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
L GA+ V+ P + SG W V ++ T+ Y +V L +R
Sbjct: 244 LAGATYVL---EPRFSASG-FWPAVRRHGATVTYLLGAMVSIL--LSQPARESDRAHRVR 297
Query: 513 V-LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
V LG +A+R F V + D + TET + Q+PGS
Sbjct: 298 VALGPGVPAALHAAFRERFGV------DLLDGYGSTETNFVIAVTHGS---QRPGSMGRL 348
Query: 572 FFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY 609
G + +VDE E+ G L +++ P AF T Y
Sbjct: 349 APGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGY 386
|
Length = 542 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 72/357 (20%), Positives = 128/357 (35%), Gaps = 84/357 (23%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
L++++L + +A+ L G+ +G ++ + +E A + GAV +V G
Sbjct: 41 ELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGM 100
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+L Q + + +P I PKA HL L K + V +
Sbjct: 101 GIKNLKQCLAEAQPDAFIGI------PKA-HLARR----LFGWGKPSVRRLVTV------ 143
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKC------EVEWVDAEDPLFLLYTSGSTGKPKGV 405
G + W + + + +D +L+TSGSTG PKGV
Sbjct: 144 -----------GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
Query: 406 LHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463
++T G + + + + +P ++ T + +GP L SV+ +
Sbjct: 193 VYTHGMFEAQIEAL---REDYGIEPGEIDLPTFPL-------FALFGPALGMTSVIP-DM 241
Query: 464 APTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV--- 517
PT P D + + +++Y VT + +P L+ E + RY + L S+
Sbjct: 242 DPTRPATVDPAKLFAAIERYGVTNLFGSPALL--------ERLGRYGEANGIKLPSLRRV 293
Query: 518 ---GEPINPSAWRWF----------FNVVGDSRC-PIS---------DTWWQTETGG 551
G P+ + F G + PIS T T+ G
Sbjct: 294 ISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGA 350
|
Length = 552 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 8e-09
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ + D +LTY++L ++ +LA++L +GV+ GD V + L L +A+L
Sbjct: 7 DAVAVDF------WDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
A + GA + + + L I D VV+TS
Sbjct: 61 AVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS 96
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
LTY +L +LA L ++GV+ GD V LP E + LACARIGAV
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAV 52
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+LT+ +L ++ ++A L+ G++KGD V++ +P +L A ++GAV ++ G
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 291 FSSDSLAQRIMDCKPKVVI 309
L + + + +P I
Sbjct: 61 MGRKHLGRCLEEAEPDAFI 79
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 65/305 (21%), Positives = 109/305 (35%), Gaps = 45/305 (14%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y++L Q+ +LA L+ +G+K GD V++ LP + E I A R+G V A S
Sbjct: 54 LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP--VLALPS 111
Query: 293 SDSLAQR--IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ + ++I + D E ++ +
Sbjct: 112 HRASELGAFASQIEAALLI-------VARQHSGFD-YRPFARELVAKHPTLRHVIVAG-- 161
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLHT 408
+ + +P DA + F + G+TG PK + T
Sbjct: 162 -----------EAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRT 210
Query: 409 TGGYMVH-TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP-----MLNGASVVVFE 462
Y A+ FD VY C H++ P L G +VV+
Sbjct: 211 HNDYYYSVRASAEICGFD--QQTVYL----CALPAAHNFPLSSPGALGVFLAGGTVVL-- 262
Query: 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522
AP P + +++++ VT+ P L SL E+ R SLR+L G ++
Sbjct: 263 -APD-PSPELCFPLIERHGVTVTALVPPLA-SLWLQAAEW-ERADLSSLRLLQVGGARLS 318
Query: 523 PSAWR 527
+ R
Sbjct: 319 ATLAR 323
|
Length = 542 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 50/184 (27%), Positives = 71/184 (38%), Gaps = 37/184 (20%)
Query: 226 DP-GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA--CA-RIG 281
DP GV TLT+SQL ++ +A L+ G GD +I P +E +A L A I
Sbjct: 28 DPAGVAETLTWSQLYRRTLNVAEELRRHGS-TGDRAVILAPQGLEYIVAFLGALQAGLIA 86
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
SV G + ++ + D P VV+T++AV + + V + A I V
Sbjct: 87 VPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAV-----VDDVTEYVAPQPGQSAPPVIEV 141
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
D + S P + D +L YTSGST
Sbjct: 142 D---LLDLDS------------------------PRGSDARPRDLPSTAYLQYTSGSTRT 174
Query: 402 PKGV 405
P GV
Sbjct: 175 PAGV 178
|
Length = 578 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 63/255 (24%), Positives = 94/255 (36%), Gaps = 32/255 (12%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWIT 442
+D L+YTSG+TG+PKGV+HT M A YA DV + T
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLM---ANIVPYAERLGLGADDVILMASPMAHQT 251
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
G Y P++ GA+ V+ + D R+ +++ VT + + L R E
Sbjct: 252 GFMYGLMMPVMLGATAVLQD----IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE- 306
Query: 503 VTRYSRKSLRVLGSVGEPINPS----AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
+ SLR G PI + A +G W TE G +T
Sbjct: 307 -SGRPVSSLRTFLCAGAPIPGALVERARA----ALGAKIVS---AWGMTENGAVTLT-KL 357
Query: 559 GAWPQKPGSAT--FPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 616
++ S T P GV+ +VD G + G L ++ F +
Sbjct: 358 DDPDER-ASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRG--CSNFGGYLKRPQLNG 414
Query: 617 TTYFKPFPGYYFTGD 631
T G++ TGD
Sbjct: 415 TD----ADGWFDTGD 425
|
Length = 547 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y+QL ++ ++AN+L+ GV++GD V++ LP + EL AMLA ++GAV +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 293 SDSLAQRIMDCKPKVVITSN 312
L R KPK ++
Sbjct: 61 PADLRDRFSRGKPKAIVADE 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 94/357 (26%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+++A+ W+ +L Y++L Q +LA+YL+D GV V I +L + +L
Sbjct: 1146 ERIALVWDG------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDEC 334
A + G + + + ++ LA + D ++++T + + +R P+A + I ALD
Sbjct: 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAI---ALDS- 1255
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L ++ +P++ + ++ +++Y
Sbjct: 1256 ----------LHLDS-------------------------WPSQAPGLHLHGDNLAYVIY 1280
Query: 395 TSGSTGKPKGVLHTTGG------YMVHTATTFKYAFDYKPSDVYWCTA---------DCG 439
TSGSTG+PKGV +T +M T YA D SDV A +C
Sbjct: 1281 TSGSTGQPKGVGNTHAALAERLQWMQAT-----YALD--DSDVLMQKAPISFDVSVWECF 1333
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
W P++ G +V+ G + D R ++V +Y VT + P L++ + +
Sbjct: 1334 W----------PLITGCRLVL-AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWR----------WFFNVVGDSRCPISDTWWQ 546
SLR L S GE + P+ R N G + I+ T WQ
Sbjct: 1383 LAAACT----SLRRLFSGGEAL-PAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQ 1434
|
Length = 4334 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 80/341 (23%), Positives = 137/341 (40%), Gaps = 22/341 (6%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+T+S +V + ANYL+ +GV+KGD V I LP + I G + ++
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN-QS 351
L ++ D KV++ + V + ++ + + L Y Q
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK 169
Query: 352 AMTRENTKWQDGRDI-WWQDVVPKYPTKCEVEWVDAEDPLFLL-YTSGSTGKPKGVLHTT 409
+ K + I W V + T EV D E+ L LL YT G+TG PKGV+ T
Sbjct: 170 KQSNLVVKVSESETIHLWNSVEKEVNTGVEVP-CDPENDLALLQYTGGTTGFPKGVMLTH 228
Query: 410 GGYMVHTATTFKYAFDYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
+ +T ++ ++ K +V + G + V ++ G +V+ P +
Sbjct: 229 KNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLI---PKF- 284
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528
D ++ + K+KVT+F APT+ +L+ + + Y S+R S P+
Sbjct: 285 DMKMVFEAIKKHKVTLFPGAPTIYIALL--NSPLLKEYDISSIRACISGSAPLPVEVQEK 342
Query: 529 FFNVVG---------DSRCPI--SDTWWQTETGGFMITPLP 558
F V G P+ S+ W+ G + P P
Sbjct: 343 FETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWP 383
|
Length = 563 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 34/202 (16%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
T+ QL V +LA L +GV+ GD V I+ P E + A ARIGA+ + +
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVC-------- 344
+ L + + VI ++A K ++ L A+ C
Sbjct: 106 ASELEYALGQSGVRWVICADAF----KTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 345 ---LTYENQSAMTRENTKWQD----GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSG 397
L W + G + + + + + +D +DP+ + YTSG
Sbjct: 162 VVSLAPAPPPGF----LAWHELQARGETVSREALAERQAS------LDRDDPINIQYTSG 211
Query: 398 STGKPKGVLHT-----TGGYMV 414
+TG PKG + GY V
Sbjct: 212 TTGFPKGATLSHHNILNNGYFV 233
|
Length = 558 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 59/236 (25%), Positives = 88/236 (37%), Gaps = 58/236 (24%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
D + P +++TSGSTGKPK V+HT G ++ A P D + +
Sbjct: 74 PDLDRPATIIFTSGSTGKPKAVVHTWGNHLAS-ARGSAENLGLTPDDNWLLSL------- 125
Query: 444 HSYVTYGPM-------------LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
P+ L G ++V+ P D+ + ++ + VT PT
Sbjct: 126 -------PLFHVSGLAIVMRSLLAGGALVL----PDKFDAEAIAEALENHGVTHISLVPT 174
Query: 491 LVRSLMRDGNEYVTRYSRKSLRV--LGSVGEPINPSAWRWFFNVVGDSRC-----PISDT 543
++ L+ SLR LG G PI PS + P+ T
Sbjct: 175 QLQRLLESLGA----RWLSSLRAVLLG--GAPIPPSLLE---------QARQRGIPLYPT 219
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGE--CSGYL 595
+ TET + T P + K GS P G + IV+ + EI G GYL
Sbjct: 220 YGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQDGEILVRGPSLFLGYL 275
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 5e-08
Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 50/201 (24%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
++Y ++ ++ + + L+ +G+K GD + I+ E I AC V ++
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
+++ + + + +V + V ++E
Sbjct: 66 EEAIEYILNETEISIVFCD--------------------------AVKV---YSFEELEE 96
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
+ ++N K ED ++YTSG+TG PKGV+ T G
Sbjct: 97 LGKKN--------------------KVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNI 136
Query: 413 MVHTATTFKYAFDYK-PSDVY 432
+ A K ++ P+DVY
Sbjct: 137 VAGVAGINKIVPEFIGPTDVY 157
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 53/226 (23%), Positives = 76/226 (33%), Gaps = 43/226 (19%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTG----GYMVHT---------ATTFKYAFDYKPSDVYW 433
D L++LYT G+TG PKGV+ + K + +
Sbjct: 3 ADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAA-GGAGTRF 61
Query: 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIF------YT 487
A C + G L VV + D R W V+K++V +
Sbjct: 62 LPA-CPLMHGAGQWLALSALFAGGTVVLLPDDKF-DPDRVWRTVEKHRVNTLVIVGDAFA 119
Query: 488 APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS---AW-RWFFNVVGDSRCPISDT 543
P L+ +L G RY SLR + S G +P N+ + D
Sbjct: 120 RP-LLEALEAAG-----RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLA------LVDA 167
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIE 588
+ETGG SAT F G V++DE G E+
Sbjct: 168 LGASETGGGGS----SVSRAGGASATGKFELGPDTVVLDEDGSEVP 209
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++L +++ L ++G+ KG V IY E ++ V + V+A
Sbjct: 121 YITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANL 180
Query: 292 SSDSL--AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
D+L A R +CK I N K P + L KSG + + Y +
Sbjct: 181 GEDALAYALRETECK---AIVCNG-KNVPNLLRL-----------MKSGGMPNTTIIYLD 225
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV----DAEDPLFLLYTSGSTGKPKGV 405
+ + R + W DVV K + + + +D ++YTSG+TG PKGV
Sbjct: 226 S---LPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGV 282
Query: 406 LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
+HT G + T A + + +D+ + +Y +Y P+
Sbjct: 283 MHTHG-----SLTAGILALEDRLNDLIGPPEE-----DETYCSYLPL 319
|
Length = 700 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A D TLTY++L ++ +LA L +G + GD V +Y + A+L
Sbjct: 6 DRPA-LVVGGD-----TLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
AC + GA + + ++ +A+ + P ++
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVA 94
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY +L V +LA L +G+ GD V++ LP + E I A ++GA+ V A
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAI--PVLA 95
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ G TY +L V ++A L +GV +GD V LP E + L
Sbjct: 39 DKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYL 98
Query: 276 ACARIGAV 283
AC+RIGAV
Sbjct: 99 ACSRIGAV 106
|
Length = 547 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 74/363 (20%), Positives = 131/363 (36%), Gaps = 62/363 (17%)
Query: 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPM 266
++ EAG D+ A Y V +T+ Q+ +L L++ G+ GD V++ LP
Sbjct: 12 EQASEAGWYDRPAFY----AADV---VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPD 64
Query: 267 LMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
+L +LAC G + + D A + +P +V+TS+A++ +
Sbjct: 65 SPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALR---DRFQPSRV 121
Query: 327 VDAA--LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
+AA + E A+ E +
Sbjct: 122 AEAAELMSEAARVAPG---------------------------------------GYEPM 142
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
+ + YTSG+TG PK +H + + A P D C+A + G
Sbjct: 143 GGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGL 202
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
+ P+ G S V+ AP P++ + ++ ++ Y P ++ + +
Sbjct: 203 GNSVWFPLATGGSAVI-NSAPVTPEAAAI--LSARFGPSVLYGVPNFFARVI----DSCS 255
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
S +SLR + S GE + G PI D TE G ++ W +
Sbjct: 256 PDSFRSLRCVVSAGEALELGLAERLMEFFGG--IPILDGIGSTEVGQTFVSNRVDEW--R 311
Query: 565 PGS 567
G+
Sbjct: 312 LGT 314
|
Length = 705 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D++A+ D G +LTY +L + +LA L +G+ GD V + P E + L
Sbjct: 1 DRIALV----DGGR--SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYL 54
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A R G V + + + LA + D +P +++
Sbjct: 55 AIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLVD 89
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++ + A+ L+ +GVKKGD V + + E +A LA A++GAV +++
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Query: 290 GFSSDSLAQRIMDCKPKVVITS 311
+ LA I + VI
Sbjct: 61 TQRGEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 82/403 (20%), Positives = 137/403 (33%), Gaps = 97/403 (24%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+K+AI D LTY + VC++AN+L + K + I L +E
Sbjct: 16 NKIAIKEN------DRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFA 68
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A G + + D L +R+ +++T L D+ D E
Sbjct: 69 GAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTE--------RYKLNDLPDE---EGR 117
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
I +D M + P Y V+ P ++ +T
Sbjct: 118 V--IEIDEW------KRMIEKYL--------------PTYAPIENVQ----NAPFYMGFT 151
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSYVTYGPM 452
SGSTGKPK L ++ H+ + F K D I G HS YG
Sbjct: 152 SGSTGKPKAFLRAQQSWL-HSFDCNVHDFHMKREDSVL-------IAGTLVHSLFLYG-- 201
Query: 453 LNGASVVVFEGAPTY------PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
A ++ G + P+ ++ +++ YT PT++ SL + R
Sbjct: 202 ---AISTLYVGQTVHLMRKFIPNQVLDK--LETENISVMYTVPTMLESLYK-----ENRV 251
Query: 507 SRKSLRVLGSVGE----------PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556
++++ S + I P A + F + F+
Sbjct: 252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEF--------------YGASELSFVTAL 297
Query: 557 LPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
+ ++P S PF VQ I +E G E++ G + +KS
Sbjct: 298 VDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKS 340
|
Length = 487 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 65/292 (22%), Positives = 105/292 (35%), Gaps = 47/292 (16%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y +L Q+ LA L +G+K+GD ++ LP + E I A ++G V A FS
Sbjct: 49 WSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAP--VLALFS 106
Query: 293 SDSL-----AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
A +I +P + I +A L D D A +K T
Sbjct: 107 HRKSELTAYASQI---EPALYI-------IDRAHSLFDYDDFARQLQSK-------LPTL 149
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
N + + +W + P P K +++ F + GSTG PK +
Sbjct: 150 RN---IIVAGQTGEAELFLWLES--PAEPVKFPP--TKSDEVAFFQLSGGSTGTPKLIPR 202
Query: 408 TTGGYMVH-TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA-- 464
T Y + Y C H+Y P GA V + G
Sbjct: 203 THNDYYYSVRRSVEICWLT--QQTRYLCALP----AAHNYPLSSP---GALGVFYAGGCV 253
Query: 465 --PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
P + +++++KVT+ P V M+ ++ R SL++L
Sbjct: 254 VLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS--RADLSSLKLL 303
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 78/404 (19%), Positives = 140/404 (34%), Gaps = 66/404 (16%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY++L V +LA L+ G G+ + + + L ACAR+GA++ + S+
Sbjct: 24 TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA 83
Query: 294 DSLAQRIMDCKPKVVITSNAVKRG-PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L + D +P++++ +AV G L + +A +
Sbjct: 84 SELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASA-----------------DALEP 126
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
+ + E +L+TSG++G+PKGV+ +
Sbjct: 127 ADTPS--------------------------IPPERVSLILFTSGTSGQPKGVMLSERN- 159
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
+ TA F + C A I G + G S++V G GR
Sbjct: 160 LQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGR 219
Query: 473 SWDIVDKYKVTIFYTAPTLVRSLMR----DGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528
D +T ++ P + ++ D + + L L + G P
Sbjct: 220 LGDP--ALGITHYFCVPQMAQAFRAQPGFDAA------ALRHLTALFTGGAPHAAEDILG 271
Query: 529 FFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGVEI 587
+ D P+ D + +E G + K G+A P VQ +VD++G +
Sbjct: 272 WL----DDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDC 327
Query: 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
G L ++ P + + T G++ TGD
Sbjct: 328 PAGVPGELLLRG--PNLSPGYWRRPQ--ATARAFTGDGWFRTGD 367
|
Length = 488 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 77/378 (20%), Positives = 134/378 (35%), Gaps = 60/378 (15%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TLTY++L +Q LA L +GV+ GD V + +A+ A ++GA ++
Sbjct: 72 RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNT 131
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
GFS LA+ K ++ + D++ A + + +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD---------EFTDLLSALPPD-------LGRLRAW-- 173
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL--------FLLYTSGSTGK 401
++ + D D++ + PL ++ TSG+TG
Sbjct: 174 --GGNPDDDEPSGSTDETLDDLIAG----------SSTAPLPKPPKPGGIVILTSGTTGT 221
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHSYVTYGPMLNGASV 458
PKG P + A TG +++T L G++V
Sbjct: 222 PKGAPRPE----PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMAL-GSTV 276
Query: 459 VV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
V+ F+ T D + K+K T P ++ ++ G E + +Y SL+++
Sbjct: 277 VLRRRFDPEATLED-------IAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIF 329
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
G ++P G + + TE F P + PG+ P GV
Sbjct: 330 VSGSALSPELATRALEAFGPVLY---NLYGSTEV-AFATIATPEDLAEAPGTVGRPPKGV 385
Query: 576 QPVIVDEKGVEIEGECSG 593
I+DE G E+ G
Sbjct: 386 TVKILDENGNEVPRGVVG 403
|
Length = 549 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D +LTY++L ++ +LA L+ GV V + L +L +A+LA + GA + +
Sbjct: 22 DESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDP 81
Query: 290 GFSSDSLAQRIMDCKPKVVIT 310
+ + LA + D ++V+T
Sbjct: 82 AYPPERLAYILEDAGARLVLT 102
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 39/176 (22%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY QL + LA ++ + + +I++ M E+ L + G H+ +
Sbjct: 25 GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG--HAYIPV 82
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
SS A+RI + I ++ +L ++ L
Sbjct: 83 DVSSP--AERI------------------EMI--IEVAKPSLIIAT-----EELPLEILG 115
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
+T + K DI+ V +D ++++TSG+TGKPKGV
Sbjct: 116 IPVITLDELK-----DIFATGNPYD-----FDHAVKGDDNYYIIFTSGTTGKPKGV 161
|
Length = 503 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 31/185 (16%)
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281
DP LTYS+L +V +A L GV+ V + P ++ IA+LA R+G
Sbjct: 18 CALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLG 77
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
AV + +M+ + K + +KRG + I A A
Sbjct: 78 AVPA--------------LMNPRLKPAEIAELIKRG--EMTAAVIAVDAQVMDAIFQSGS 121
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
V + E P E E P F+ YTSG+TG
Sbjct: 122 GVRVLALGDLVGLGEP----------ESAGPPIEDPPRE-----PEQPAFVFYTSGTTGL 166
Query: 402 PKGVL 406
PKG +
Sbjct: 167 PKGAV 171
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 30/252 (11%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+T G+TG PK H+ V A P DV + G P
Sbjct: 7 YFHTGGTTGAPKLARHSHRN-EVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAP 65
Query: 452 MLNGASVVVFEGAPTYPDS---GRSWDIVDKYKVTIFYTAPTLVRSL--MRDGNEYVTRY 506
+ GA+VV+ + + W IV++Y+VT+ PT++ +L + G+ ++
Sbjct: 66 LARGATVVL-PTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDADIS-- 122
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKP 565
SLR + P+ R F V G P+ + + TE TG I P G P++P
Sbjct: 123 ---SLRYALTGAAPLPVEVARRFEAVTG---VPVVEGYGMTEGTGVSAINPRGG--PRRP 174
Query: 566 GSA--TFPFFGVQPVIVDEKGVEIEGECS----GYLCIKSSWPGAFRTLYGDHERYETTY 619
GS P+ V+ +D G +C+ G L I+ P F Y +
Sbjct: 175 GSVGLRLPYTRVRVAKLDAGGALGR-DCAPGEVGVLAIRG--PNVFPG-YLNDAHNAGAR 230
Query: 620 FKPFPGYYFTGD 631
+ G+ TGD
Sbjct: 231 LE--DGWLNTGD 240
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 64/310 (20%), Positives = 124/310 (40%), Gaps = 60/310 (19%)
Query: 199 TNICYNCLDRNIEAGLG---DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVK 255
T +C+ + IEA ++ A+ + + L+Y++L +Q +LA+ L GV
Sbjct: 507 TEYAPDCVHQLIEAQARQHPERPALVFG------EQVLSYAELNRQANRLAHVLIAAGVG 560
Query: 256 KGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT-SNAV 314
V I + +E+ + +LA + G + + + D LA + D ++++T S+ +
Sbjct: 561 PDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLL 620
Query: 315 KRGPKAIHLKDIV-DAALDE-CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372
+ P L+ + D D C SG + +V L +N +
Sbjct: 621 AQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPDNLA--------------------- 659
Query: 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG---YMVHTATTFKYAFDYKPS 429
+++YTSGSTG+PKGV + G Y+ A + A D
Sbjct: 660 ------------------YVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSML 701
Query: 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489
V D G +G + +GA++ + D+ ++ VT+ P
Sbjct: 702 MVSTFAFDLG-----VTELFGALASGATLHLL-PPDCARDAEAFAALMADQGVTVLKIVP 755
Query: 490 TLVRSLMRDG 499
+ +++L++
Sbjct: 756 SHLQALLQAS 765
|
Length = 3956 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 67/272 (24%), Positives = 89/272 (32%), Gaps = 57/272 (20%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHT-----ATTFKYAFDYKPSDVYWCTADCGWIT 442
DP F +YTSG+TG PK + M H F KP DV +
Sbjct: 82 DPAFYIYTSGTTGLPKAAI------MSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSN 135
Query: 443 GHSYVTYGPML-NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR---- 497
V + L GAS+ + + S + W V +Y T F L R L+
Sbjct: 136 A-LTVGWSSALAAGASLAL---RRKFSAS-QFWPDVRRYGATAFQYVGELCRYLLNQPEK 190
Query: 498 --DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT 555
D + + + LR P W F G R I + + TE G
Sbjct: 191 PDDRDHPLRKIIGNGLR----------PDIWDEFKERFGVPR--IVEFYGSTE-GNVGFI 237
Query: 556 PLPGAWPQKPGSATF-PFFGVQPVIVDEKGVEI----EGEC-------SGYLCIKSSWPG 603
L KPG+ P + V D + E G C G L + +
Sbjct: 238 NLFN----KPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRN 293
Query: 604 AFRTLYGDHERYE----TTYFKPFPGYYFTGD 631
F Y D E E FK Y+ TGD
Sbjct: 294 PF-DGYTDDEATEKKILRDVFKKGDAYFNTGD 324
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 53/233 (22%)
Query: 210 IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD----------- 258
+ A D+ A + E D TY L +LAN L +GVK GD
Sbjct: 9 LRAAFADRDAPFIETPDG---LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPE 65
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
A+ +Y LA R GAV + ++ L I D +P +V+ A
Sbjct: 66 ALALY-----------LATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWL 114
Query: 319 KAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK 378
I A +G L + ++ D + VP+
Sbjct: 115 SKI------------AAAAGAPHVETLDADGTGSLLEAAAAAPDDF-----ETVPR---- 153
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
A+D +LYTSG+TG+ KG + + G ++ A T + + P DV
Sbjct: 154 ------GADDLAAILYTSGTTGRSKGAMLSHGN-LLSNALTLVDYWRFTPDDV 199
|
Length = 504 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 8e-07
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
G+ T+T+++L ++V +LA L +GVK GD V I E IA LA GAV +
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSN 312
+ S + +A + D +VV +
Sbjct: 61 YPTSSPEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 59/275 (21%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTG------GYMVHTATTFKYAFDYKPSDVYWCTAD 437
D +D ++L+TSGSTGKPKGV + +MV FD DV+ A
Sbjct: 94 ADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVED-------FDLTEGDVFSNQAP 146
Query: 438 CGWITGHS-----YVTYGPMLNGASVVVFEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTL 491
S + + + +GA++ V + + + ++ +T++ + P+
Sbjct: 147 ------FSFDLSVFDLFPALASGATLYVI--PKEQIADPLALFEFLKEHGLTVWVSVPSF 198
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET-- 549
L+ + S SLR GE + + ++R I + + TE
Sbjct: 199 ASLLLLSRE--LNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNAR--IINLYGPTEATV 254
Query: 550 --GGFMIT--------PLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
+ +T PLP +P KPG +I+DE G + G L I
Sbjct: 255 AVTAYEVTPEPLSRNEPLPIGYP-KPGLRA--------LILDEDGRPVPPGEEGELVIA- 304
Query: 600 SWPGAFRTL--YGDHERYETTYFKPFP-GYYFTGD 631
G + + E+ +F+ +Y TGD
Sbjct: 305 ---GPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGD 336
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 50/206 (24%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG----------- 281
LTY ++ ++ + ++ GV GD IY E IAM AC G
Sbjct: 78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137
Query: 282 --AV-----HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDE 333
AV H+ V F +S I+ C PK +SN K I D+ +E
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSILSCLPKC--SSNL-----KTIVSFGDVSSEQKEE 190
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
+ G+S C ++E S M + + P K + D ++
Sbjct: 191 AEELGVS---CFSWEEFSLMGSLDCE---------------LPPKQK------TDICTIM 226
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTATT 419
YTSG+TG+PKGV+ T + +T
Sbjct: 227 YTSGTTGEPKGVILTNRAIIAEVLST 252
|
Length = 660 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++LL+ V +LA L++ GV+KGD V +Y+ + IA A R GAV V
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 292 SSDSLAQRIMDCKPKVVIT 310
L + D +V+I
Sbjct: 61 REAELEHILNDSGARVLIV 79
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-06
Identities = 74/418 (17%), Positives = 147/418 (35%), Gaps = 83/418 (19%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ L+Y++L ++ +LA+ L + GV V + + +E+ + +LA + G + +
Sbjct: 3080 EQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDP 3139
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+ + LA + D +++++ + ++ +D + A++ ++
Sbjct: 3140 EYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDENYAEANPAIRT------ 3193
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
E+ +++YTSGSTGKPKGV
Sbjct: 3194 -----------------------------------MPENLAYVIYTSGSTGKPKGVGIRH 3218
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFE 462
H Y + ++ + P+++GA VV+
Sbjct: 3219 SALSNHLCWM---------QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL-A 3268
Query: 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522
G + D ++++ V + S+++ E + SL+ + GE +
Sbjct: 3269 GPEDWRDPALLVELINSEGVDV----LHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALP 3324
Query: 523 PS-AWRWF-----FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 576
+ F +N+ G + I+ T WQ G P+ + + ++
Sbjct: 3325 ADLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR--ACYILDGSLE 3382
Query: 577 PVIVDEKG---VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
PV V G + EG GY + PG ER+ F P Y TGD
Sbjct: 3383 PVPVGALGELYLGGEGLARGYH----NRPGL------TAERFVPDPFVPGERLYRTGD 3430
|
Length = 5163 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 65/320 (20%), Positives = 118/320 (36%), Gaps = 59/320 (18%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVII-------YLPMLMELPIAMLACARIGAVHS 285
T + + V LA L +G++ GD V I YL +LA A G + +
Sbjct: 33 RTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEW-------LLAVACAGGIVA 85
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-----DECAKSGIS 340
+ +S + ++ +P +++T + + + + I
Sbjct: 86 PLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF 145
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
++ LT E + + + W +D + + +TSG+TG
Sbjct: 146 LNSFLTTEM----------------LKQRALGTTELDYA---WA-PDDAVLICFTSGTTG 185
Query: 401 KPKGVLHTTGGYMVHTATTF----KYAF-DYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
+PKGV + H+A K A Y DVY TA I G S M+
Sbjct: 186 RPKGVTIS------HSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGA 239
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL- 514
V++ P + D+ + + ++ VT T P ++ L+ + +T S+R +
Sbjct: 240 CHVLL----PKF-DAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKIL 294
Query: 515 ---GSVGEPINPSAWRWFFN 531
GS+ + P A + F N
Sbjct: 295 NGGGSLSSRLLPDAKKLFPN 314
|
Length = 563 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+TY Q+ ++VC A+ L +G K + V I+ E IA+ C R ++A
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166
Query: 293 SDSLAQR---------IMDCK--PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
++L I D K K++ S+ ++ + I++ D + + + SG S
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDS--DSSLSGSSN 224
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
++ + +EN V P P+ D ++YTSGSTG
Sbjct: 225 WTVSSFSEVEKLGKENP------------VDPDLPSP--------NDIAVIMYTSGSTGL 264
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432
PKGV+ T G + A +DVY
Sbjct: 265 PKGVMMTHGNIVATVAGVMTVVPKLGKNDVY 295
|
Length = 696 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 60/264 (22%), Positives = 94/264 (35%), Gaps = 47/264 (17%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA----DCGW-- 440
+D ++YTSGSTG+PKGV+ + + +Y + D D G
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQY-LELTEDDRILAVLPFSFDYGLSQ 60
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD---KYKVTIFYTAPTLVRSLMR 497
+ V G ++V+ E +P D++ K ++T F PT L+R
Sbjct: 61 LLTAFRV-------GGTLVL-ESRFAFP-----RDVLKHLAKERITGFAGVPTTWAQLLR 107
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
+ SLR L + G + D++ + + TE F T L
Sbjct: 108 LDPLAREDFP--SLRYLTNAGGALPAKTILQLRRAFPDAK--LFSMYGLTEA--FRSTYL 161
Query: 558 PGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL--YGD 611
P P ++P S V+ +VDE G G L + GA + D
Sbjct: 162 P---PEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHR----GANVMKGYWND 214
Query: 612 HERYETTYFKPFP----GYYFTGD 631
E +P P +TGD
Sbjct: 215 PEATAER-LRPGPLPGEIVLYTGD 237
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+++ + +LA+ L G+ +GD V + LP + + A GAV + + +
Sbjct: 45 TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDA 104
Query: 294 DSLAQRIMDCKPKVVIT----SNAVKR------GPKAIHLKDIVDAALDECAKSGISVDV 343
S+A + + KV+I + + GPK + + D+ D G ++D
Sbjct: 105 ASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPL-VIDVDDPEYPGGRFIG-ALD- 161
Query: 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
YE A + W D EW D + L YTSG+TG PK
Sbjct: 162 ---YEAFLASGDPDFAWT-----LPAD-----------EW----DAIALNYTSGTTGNPK 198
Query: 404 GVL-HTTGGYM 413
GV+ H G Y+
Sbjct: 199 GVVYHHRGAYL 209
|
Length = 545 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 30/184 (16%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++ L+QV +A L D+G+ ++I +E + LA G + V +
Sbjct: 25 RVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAY 84
Query: 292 S--SDSLA--QRIMD-CKPKVVITSNAVK--RGPKAIHLKDIVDAALDECAKSGISVDVC 344
S S A + I D P V + R A+ L + A+ G
Sbjct: 85 SLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVR-----GAPGGPA 139
Query: 345 LTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 404
+ + T D V KY L+TSGSTG PK
Sbjct: 140 IAFA-ALLATPPTAAVDAAFAAVGPDTVAKY-----------------LFTSGSTGLPKA 181
Query: 405 VLHT 408
V++T
Sbjct: 182 VINT 185
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A+DP +L+TSGSTG PKGV++T + + + + + D
Sbjct: 84 ADDPAAILFTSGSTGPPKGVVYTHRTFAAQID---ALRSLYGIREGDRDLAAFP------ 134
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+ +GP L G + V+ PT P D + + + + + +P L++++ R
Sbjct: 135 -PFALFGPAL-GVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVAR--- 189
Query: 501 EYVTRYSRK--SLRVLGSVGEPINPSAWRWFFNVVGD 535
Y + SLR + S G P+ P R F +
Sbjct: 190 -YCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMP 225
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 35/151 (23%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV-HTA-TTFKYAFDYKPSDVYWCTADCGWI 441
D +D +++YTSGSTGKPKGV V H A F + +P A +
Sbjct: 90 TDPDDLAYVIYTSGSTGKPKGV-------EVSHRALVNFLLSMARRPG----LGASDRLL 138
Query: 442 TGHSYVT-----------YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
VT P+L+GA+VV+ A T D R ++ ++TI P
Sbjct: 139 A----VTTISFDISVLELLLPLLSGATVVI-ASAETVRDPERLARLIADERITIMQATPA 193
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
R L+ G R+SL L GE +
Sbjct: 194 TWRMLLAAGWR-----GRESLTAL-CGGEAL 218
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
TY + ++V LA L +G++KGD V I+ P + E + A A+IGA+
Sbjct: 44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94
|
Length = 559 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 73/331 (22%), Positives = 122/331 (36%), Gaps = 52/331 (15%)
Query: 230 DATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288
T+TY+++ ++ Q+A L G+K GD V + L L A++G + +
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60
Query: 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
S SL C +V++ P+ L + V+ L G+ V Y
Sbjct: 61 TNIRSGSLLHCFRCCGARVLVAD------PE---LLEAVEEILPALRAMGVRV----FYL 107
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG---- 404
+ ++ D + VP + V +YTSG+TG PK
Sbjct: 108 SHTSPPEGVISLLAKVDAASDEPVPASL-RSGVSI---RSTALYIYTSGTTGLPKAARIS 163
Query: 405 ---VLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
VL +G + T DV + T +G G + GA++V+
Sbjct: 164 HLRVLQCSGMLSLCGVTA---------DDVVYTTLPLYHSSGALLGIVGCIGLGATLVL- 213
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM----RDGNEYVTRYSRKSLRVLGSV 517
P + + + WD KY VT+F L+R L D + + +V ++
Sbjct: 214 --KPKF-SASQFWDDCRKYNVTVFQYIGELLRYLCNQPQSDND--------RDHKVRLAI 262
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
G + P WR F G + +T+ TE
Sbjct: 263 GNGLRPDVWREFLRRFGPIH--VWETYASTE 291
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
+LT+ +L Q+V QLA L +GV++GD V + +E + LA R+GAV
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV 52
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 77/349 (22%), Positives = 134/349 (38%), Gaps = 61/349 (17%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
++Y QL LA L D G++ GD V + E + + A R G + +
Sbjct: 24 QVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE-CAKSGISVDVCLTYENQ 350
++ + D +V++ S AALD AK G + + L++ +
Sbjct: 84 TAPEADYIVGDSGARVLVAS-----------------AALDGLAAKVGADLPLRLSFGGE 126
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL--FLLYTSGSTGKPKGV--- 405
DG + + P E P +LY+SG+TG PKG+
Sbjct: 127 I----------DGFGSFEAALAGAGPRL-------TEQPCGAVMLYSSGTTGFPKGIQPD 169
Query: 406 -----LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN--GASV 458
+ G +V A F +D SD+Y+ +A I + + + M++ G +V
Sbjct: 170 LPGRDVDAPGDPIVAIARAF---YDISESDIYYSSAP---IYHAAPLRWCSMVHALGGTV 223
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
V+ A + D+ + V++Y++T+ PT+ L++ + TRY SLR +
Sbjct: 224 VL---AKRF-DAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAA 279
Query: 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
P + +G PI ++ + M W PGS
Sbjct: 280 APCPVDVKHAMIDWLG----PIVYEYYSSTEAHGMTFIDSPDWLAHPGS 324
|
Length = 501 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 56/229 (24%), Positives = 85/229 (37%), Gaps = 70/229 (30%)
Query: 197 GITNICYNCLDRNIEAGLGDKVA---IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIG 253
G T I ++RNI A +GD VA + + G LT++QL ++ + L+ +
Sbjct: 33 GTTLISL--IERNI-ANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV- 88
Query: 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA----GFSSDSLAQRIMDCKPKVVI 309
GD V I P ++ A + G + +FA G ++ L + D +P VV+
Sbjct: 89 AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPG-HAERLDTALRDAEPTVVL 147
Query: 310 TSNAVK-------------RGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
T+ A R P+ I + I D+A +
Sbjct: 148 TTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGE------------------------ 183
Query: 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
VP VE +D +D L YTSGST P GV
Sbjct: 184 -------------SFVP-------VE-LDTDDVSHLQYTSGSTRPPVGV 211
|
Length = 612 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 27/176 (15%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+ L Y +L+ +V LA L+ V +G V++ E +++LACA++GA+ +
Sbjct: 40 SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGN 99
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
++ + P + + K A + + + + I+VD+
Sbjct: 100 LPIAAIERFCQITDPAAALVAPGSKMASSA--VPEALHSI------PVIAVDI------- 144
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 406
+ + D +EDPL +++TSG+TG+PK VL
Sbjct: 145 ---AAVTRESEHSLDAASLAGNADQ---------GSEDPLAMIFTSGTTGEPKAVL 188
|
Length = 540 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 62/265 (23%), Positives = 91/265 (34%), Gaps = 82/265 (30%)
Query: 382 EWVDAEDPLF------------LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKP 428
EW+ D F + YTSG+TG PKGVL++ ++H A
Sbjct: 160 EWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSA 219
Query: 429 SDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
+D W A G V G L+GASV ++++
Sbjct: 220 ADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASV---------------YELL 264
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
D KVT PT+ L+ +Y+ + L L V V G S
Sbjct: 265 DTEKVTFTAGVPTVWLMLL----QYMEK-EGLKLPHLKMV--------------VCGGSA 305
Query: 538 CPIS-------------DTWWQTETGGF-MITPLPGAWPQKPGSAT--------FPFFGV 575
P S W TE + L + + PG A +P FGV
Sbjct: 306 MPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV 365
Query: 576 QPVIVDEKGVEI--EGECSGYLCIK 598
+ I D+ G E+ +G+ G L ++
Sbjct: 366 EMKITDDAGKELPWDGKTFGRLKVR 390
|
Length = 542 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 39/173 (22%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTY QL +Q +LA +++ + K +I+Y M + +A L + G + V
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
S+ + I P++VI + + A+ + I +AL++ SG V
Sbjct: 86 SERIEMIIEAAGPELVI--HTAELSIDAVGTQIITLSALEQAETSGGPVSF--------- 134
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
V +D +++YTSGSTG PKGV
Sbjct: 135 ----------------------------DHAVKGDDNYYIIYTSGSTGNPKGV 159
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+Y +L Q LA L+ G+K GD ++ L + E I A ++G V A F
Sbjct: 48 QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA--PVNALF 105
Query: 292 SSDSL-----AQRIMDCKPKVVITSN 312
S A +I +P ++I
Sbjct: 106 SHQRSELNAYASQI---EPALLIADR 128
|
Length = 536 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 367 WWQDVVPKYPTKCEVEWV---------DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+W+ EW+ D ED +L+TSG+ PKGV T + +
Sbjct: 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQR 213
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
K+ F K DV G + T P+L+G VVF P YP + +++
Sbjct: 214 ACLKF-FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVP-VVFAYNPLYPK--KIVEMI 269
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
D+ KVT + P +++ + + V+G
Sbjct: 270 DEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIG 307
|
Length = 539 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D++A+ + A+DPG L+Y L + +A L+ GD ++ P + A
Sbjct: 24 DRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASF-GDRAVLLFPSGPDYVAAFF 82
Query: 276 ACARIGAVHSVVFAGFSS-----DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA 330
C G + + S+ + L I D +P++++T ++ + +
Sbjct: 83 GCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQM------EEL 136
Query: 331 LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390
A + VD A+ WQ+ P + +D
Sbjct: 137 AAANAPELLCVDTL-----DPALAEA-----------WQE-----PA------LQPDDIA 169
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF--DYKPSDV 431
FL YTSGST PKGV + G +V ++ F D P DV
Sbjct: 170 FLQYTSGSTALPKGV-QVSHGNLVANEQLIRHGFGIDLNPDDV 211
|
Length = 4334 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 31/188 (16%)
Query: 224 ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
DP V+ LTY +LL L LK G+ V + LP + A G V
Sbjct: 651 VEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708
Query: 284 HSVVFAGFSSDSLAQRIMDCKP---KVVITSNA-VKRGPKAIHLKDIVDAALDECAKSGI 339
+++ FS+ +A + CK K V+TS A +++ L +++A +
Sbjct: 709 PAMI--NFSA-GIANILSACKAAQVKTVLTSRAFIEKA----RLGPLIEA---------L 752
Query: 340 SVDVCLTY-ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 398
+ + Y E+ R D P D +DP +L+TSGS
Sbjct: 753 EFGIRIIYLED----VRAQIGLADKIKGLLAGRFPLVYFC----NRDPDDPAVILFTSGS 804
Query: 399 TGKPKGVL 406
G PKGV+
Sbjct: 805 EGTPKGVV 812
|
Length = 1140 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 45/192 (23%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA----MLACARIGAVHSVV 287
LTY++ L++V +A L D G+ ++I L I LA G ++ V
Sbjct: 69 RLTYAEALERVRAIAQALLDRGLSAERPLMI----LSGNSIEHALLALAAMYAGVPYAPV 124
Query: 288 FAGFS--SDSLAQ--RIMD-CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342
+S S + +++ P +V + AL + + V
Sbjct: 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-----------FARALAAVVPADVEV- 172
Query: 343 VCLTYENQSAMTRENTKWQD------GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTS 396
+ R T + V + V + L+TS
Sbjct: 173 --VAVRGAVPG-RAATPFAALLATPPTAA-----VDAAHAA------VGPDTIAKFLFTS 218
Query: 397 GSTGKPKGVLHT 408
GSTG PK V++T
Sbjct: 219 GSTGLPKAVINT 230
|
Length = 614 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 41/185 (22%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL---PMLMELPIAMLACARIGAVHSV 286
D ++Y++ Q++ Q A L G+ +GD V + + +EL A + +GAV
Sbjct: 25 DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLEL---AFAASYLGAVFLP 81
Query: 287 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346
+ ++D +A + D K+++ K ++DAA
Sbjct: 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAA--------------- 126
Query: 347 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF-LLYTSGSTGKPKGV 405
Q+ R Q G +I P+ A L L+YTSG+T +PKGV
Sbjct: 127 ---QADSRRLA---QGGLEI-----PPQAAV--------APTDLVRLMYTSGTTDRPKGV 167
Query: 406 LHTTG 410
+H+ G
Sbjct: 168 MHSYG 172
|
Length = 497 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 57/180 (31%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+L+Y QL Q+V LA L+ +GVK + + L ++ IA LAC + G V + F
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFF 58
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT-YENQ 350
S+ HL L++ D+ ++ +
Sbjct: 59 SAQQTQ------------------------HL-------LNDAG-----ADLLISDDPDA 82
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF-----LLYTSGSTGKPKGV 405
++ L + YTSGSTG+PKGV
Sbjct: 83 ASALHTPFATLGEDLYIALRPSA------------NPVELPAGTAKITYTSGSTGQPKGV 130
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY ++++ + A L+ +G++KG V++ LP + E I L G VF+G
Sbjct: 55 AVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGG----VFSGA 110
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE--N 349
+ +L I K+ +A K IV + G+ + V + E
Sbjct: 111 NPTALESEI--------------KKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKI 156
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
+ A+ W++ + + + E + D L ++SG+TG KGV+ T
Sbjct: 157 EGAVN-----WKE-----LLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLT 205
|
Length = 546 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430
+L+YTSGSTGKPKGV+ + G +H + F + D
Sbjct: 2337 YLIYTSGSTGKPKGVVVSHGEIAMHCQAVIE-RFGMRADD 2375
|
Length = 4334 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 67/294 (22%), Positives = 106/294 (36%), Gaps = 74/294 (25%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
L+Y + L LA LK +K + V I LP + +A LA G V V +
Sbjct: 641 ELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGKV--PVNLNY 697
Query: 292 --SSDSLAQRIMDCKPKVVITSNA-------------VKRGPKAIHLKDIVDAALDECAK 336
S +L I + K VITS + K I+L+D+ K
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDL---------K 748
Query: 337 SGIS-VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ IS VD + + Y +D ++++
Sbjct: 749 AKISKVDKLTALLAARLLP-----------ARL--LKRLYGPT-----FKPDDTATIIFS 790
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPSDVYWCTADCGWITG-----HSY- 446
SGS G+PKGV+ + + + + F+ + DV I HS+
Sbjct: 791 SGSEGEPKGVMLSHHNIL----SNIEQISDVFNLRNDDV---------ILSSLPFFHSFG 837
Query: 447 ---VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
+ P+L G VV+ PT D+ +V K++ TI PT +R +R
Sbjct: 838 LTVTLWLPLLEGIK-VVYHPDPT--DALGIAKLVAKHRATILLGTPTFLRLYLR 888
|
Length = 1146 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 9e-04
Identities = 61/261 (23%), Positives = 91/261 (34%), Gaps = 55/261 (21%)
Query: 376 PTKCEVEWVDAED-----PLF-------LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKY 422
P C V A+D P F L YTSG+TG PKG L++ ++H
Sbjct: 153 PLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPD 212
Query: 423 AFDYKPSDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471
A D W +TG V GP L+G S+
Sbjct: 213 AMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSL------------- 259
Query: 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
+++++ +VT PT+ L+ E R+S V+G G P+ R F +
Sbjct: 260 --YELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIG--GSACPPAMIRTFED 315
Query: 532 VVGDSRCPISDTWWQTETGGF-MITPLPGAWPQKPGSATF--------PFFGVQPVIVDE 582
G + W TE + L Q P +GV IV +
Sbjct: 316 EYG---VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD 372
Query: 583 KGVEI--EGECSGYLCIKSSW 601
G E+ +G+ G L ++ W
Sbjct: 373 DGRELPWDGKAFGDLQVRGPW 393
|
Length = 539 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 204 NC----LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYL-KDIGVKKGD 258
NC LDR++ G G++ + T TY LL + ++A+ L +D+GV G+
Sbjct: 34 NCAAELLDRHVHNGRGNRPCFR------TFEETWTYQDLLDRANRIAHVLVEDLGVVPGN 87
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC 303
V++ L LA + GA+ + L I+D
Sbjct: 88 RVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAKELTT-IVDK 131
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
GD+ + + G TY+ ++V +LAN L+ +GVK GD V
Sbjct: 10 GDREIVSRTPD--GSIHRYTYADFYRRVRRLANALESLGVKPGDRV 53
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
+ TY Q+ + LA+YL G+K+GD V+IY ++L +A++ + GA SV+
Sbjct: 270 SFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVI 325
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 51/204 (25%)
Query: 232 TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV------- 283
T+TY + Q V Q A YL ++ +KKGD V + +P ++ PIA R G
Sbjct: 50 TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPL 109
Query: 284 -------HSVVFAGFSS--------DSLAQRIMDCKPKVVITSNA--VKRGPKAIHLKDI 326
H ++ +G S ++ Q I D K VIT+ + PKA +
Sbjct: 110 YTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKA----AL 165
Query: 327 VDAALDECAK--SGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
V+ + K ++ + + A+ R+++ +P +
Sbjct: 166 VNFVVKYVKKLVPEYRINGAIRFREALALGRKHS-------------MPTLQ-------I 205
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHT 408
+ +D FL YT G+TG KG + T
Sbjct: 206 EPDDIAFLQYTGGTTGVAKGAMLT 229
|
Length = 560 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
+TY +L + LA +L+ G+ KG V I +P +++ P+A+ A R G V
Sbjct: 46 GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99
|
Length = 557 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 90/440 (20%), Positives = 148/440 (33%), Gaps = 97/440 (22%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG---AVHSVVFA 289
+TY + + V LA L D+G+ G V+I +E + LA + G A S ++
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 290 GFSSD--SLAQRIMDCKPKVVITSNAV--KRGPKAIHLKD--IVDAALDECAKSGISVDV 343
S D L KP+VV + R A+ L D +V + I+
Sbjct: 141 LMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFAD 200
Query: 344 CL----TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGST 399
T +A+ D V KY L+TSGST
Sbjct: 201 LAATPPTAAVAAAIAAIT-----------PDTVAKY-----------------LFTSGST 232
Query: 400 GKPKGVLHTTGGYMVHTA---TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGA 456
G PK V++T + A D P W+ + + NG
Sbjct: 233 GMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSL------DWMPWNHTMGGNANFNG- 285
Query: 457 SVVVFEGAPTYPDSGR------SWDIVDKYKV--TIFYTAPT----LVRSLMRDGNEYVT 504
+++ G Y D G+ I + ++ T++ P L ++ +D + +
Sbjct: 286 --LLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKD--DALR 341
Query: 505 RYSRKSLRVLGSVGEPINPSAW----RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
R K+LR++ G ++ + G R P + TET T
Sbjct: 342 RSFFKNLRLMAYGGATLSDDLYERMQALAVRTTG-HRIPFYTGYGATETAP---TTTGTH 397
Query: 561 W-PQKPGSATFPFFGVQPVIV---DEKGVEIEGEC--SGYLCIKSSWPGAFRTLYGDHER 614
W ++ G P GV+ + D+ V ++G GY + D E
Sbjct: 398 WDTERVGLIGLPLPGVELKLAPVGDKYEVRVKGPNVTPGY--------------HKDPEL 443
Query: 615 YETTYFKPFPGYYFTGDGCS 634
+ + G+Y GD
Sbjct: 444 TAAAFDE--EGFYRLGDAAR 461
|
Length = 624 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434
VD +DP L+YTSG+TG PKG + +V + P Y C
Sbjct: 84 VDPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC 134
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 635 | |||
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.93 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.91 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.89 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.88 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.82 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.67 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.48 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.31 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.45 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.53 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 94.48 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 93.47 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 90.78 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 83.07 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 80.1 |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=624.35 Aligned_cols=509 Identities=88% Similarity=1.540 Sum_probs=415.7
Q ss_pred ccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccc-cccccccccccCCCCccccCCCCcchHHHH
Q 006688 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWG-QRVCSENLDVRKGNVKIEWFKGGITNICYN 204 (635)
Q Consensus 126 ~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 204 (635)
.+++++.|+.....+++++|.+++++.++||+.||+++++.+.|..+++ .++...+.+...+++..+||+++++|.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~ 92 (666)
T PLN02654 13 LVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYN 92 (666)
T ss_pred ccCCCHHHHhhccCCCHHHHHHHHHHHhcCHHHHHHHHHHhCCeecCCCcceEeccCCCcccCCccccccCCCEeeHHHH
Confidence 5678899988888888899999999999999999999998888988863 134322233333444679999999999999
Q ss_pred HHhhhhhc-cCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCe
Q 006688 205 CLDRNIEA-GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (635)
Q Consensus 205 ~l~~~~a~-~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~ 283 (635)
+|+++ ++ .+|+++|+++.+.+.+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 93 ~l~~~-~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav 171 (666)
T PLN02654 93 CLDRN-VEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAV 171 (666)
T ss_pred HHHHh-hccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 99998 55 58999999986543345689999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCC
Q 006688 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (635)
Q Consensus 284 ~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (635)
++|+++.++.+++.++++++++++||+++......+...++..++.+..........+..++..+...........+...
T Consensus 172 ~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (666)
T PLN02654 172 HSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEG 251 (666)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccC
Confidence 99999999999999999999999999998887777777777777665443211112223333333211000001111122
Q ss_pred CcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecc
Q 006688 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
+...|+++........+.....++|+++|+|||||||.||||+++|++++..........++++++|++++.+|++|+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 331 (666)
T PLN02654 252 RDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITG 331 (666)
T ss_pred CcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhh
Confidence 23345544433222223344678999999999999999999999999977665556666789999999999999999999
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCH
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (635)
+.+.++.+|+.|++++++++.+..+++..++++|++++||+++.+|++++.|.+...+.....++++||.++++||++++
T Consensus 332 ~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~ 411 (666)
T PLN02654 332 HSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINP 411 (666)
T ss_pred hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCH
Confidence 87888999999999999987666569999999999999999999999999999875433345678999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCc
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPG 603 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~ 603 (635)
++++++.+.+|..++++.+.||+||+++..+...+...+.+++++|+|++|++++|+|++|++++.++.|||+|++|+|+
T Consensus 412 ~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~ 491 (666)
T PLN02654 412 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPG 491 (666)
T ss_pred HHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCch
Confidence 99999999998555789999999999876655443333467889999999999999999999999999999999999999
Q ss_pred chhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 604 AFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 604 v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++|||+++++|.+.|+...+|||+|||+|++
T Consensus 492 ~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~ 523 (666)
T PLN02654 492 AFRTLYGDHERYETTYFKPFAGYYFSGDGCSR 523 (666)
T ss_pred hhhhhcCChHHHHHhhhhcCCCEEEeCceEEE
Confidence 99999999999999988767899999999985
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=595.98 Aligned_cols=479 Identities=59% Similarity=1.101 Sum_probs=400.9
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhh-cccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al 220 (635)
+++|.+++++++++|+.||.++++. +.|.++++ ++... . .++..+||+++.+|.++++|+++ ++.+|+++|+
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~wf~~~~~n~~~~~l~~~-~~~~p~~~Al 76 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFT-KVLDW----S-FPPFYKWFVGGELNVSYNCVDRH-LEARPDKVAI 76 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcCceecCCc-eeecC----C-CCCCCeeCCCCEEEHHHHHHHHh-hccCCCCeEE
Confidence 5789999999999999999999876 88988886 44421 1 22356999999999999999998 7889999999
Q ss_pred EEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHH
Q 006688 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300 (635)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il 300 (635)
++.+++.+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus 77 ~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l 156 (625)
T TIGR02188 77 IWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRI 156 (625)
T ss_pred EEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHH
Confidence 98764335568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCC-CccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCC
Q 006688 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI-SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379 (635)
Q Consensus 301 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (635)
++++++++|+++....+.+...+...+++.+..+ + .++.++.++.... ...+.......+.+++.......
T Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 228 (625)
T TIGR02188 157 NDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC----PVSVEHVLVVRRTGN----PVPWVEGRDVWWHDLMAKASAYC 228 (625)
T ss_pred HhcCCCEEEEcCccccCCcccchHHHHHHHHHhC----CCCccEEEEEcCCCC----CcCccccccccHHHHHhhcCCCC
Confidence 9999999999988776666666666666554432 3 4566666654321 00111222334555544333333
Q ss_pred CcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEE
Q 006688 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 380 ~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lv 459 (635)
......++++++|+|||||||.||||+++|++++..........++++++|++++.++++|..++.+.++.+|+.|++++
T Consensus 229 ~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~v 308 (625)
T TIGR02188 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTV 308 (625)
T ss_pred CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEE
Confidence 34456789999999999999999999999999776655555666889999999999999999887778899999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcc
Q 006688 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (635)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~ 539 (635)
++++.+..+++..+++.|++++||+++++|++++.|.+.........++++||.+++|||++++++++++.+.++..+++
T Consensus 309 l~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~ 388 (625)
T TIGR02188 309 MFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCP 388 (625)
T ss_pred EECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCc
Confidence 99876555689999999999999999999999999998754433456789999999999999999999999998755588
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccC-CCcceEEEEecCCCcchhhhcCChhHHHHh
Q 006688 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (635)
Q Consensus 540 l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp-~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~ 618 (635)
++|.||+||+++.++.........+++++|+|++|++++|+|++|++++ +|+.|||+|+||+|++++|||++++++.+.
T Consensus 389 i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~ 468 (625)
T TIGR02188 389 IVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDT 468 (625)
T ss_pred eEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHH
Confidence 9999999999876654433323457789999999999999999999999 999999999998889999999999999999
Q ss_pred hcCCCCceEEcCCeEec
Q 006688 619 YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 619 ~~~~~~g~yrTGDlgr~ 635 (635)
++...+|||+|||+|++
T Consensus 469 ~~~~~~g~~~TGDl~~~ 485 (625)
T TIGR02188 469 YFSPFPGYYFTGDGARR 485 (625)
T ss_pred HhccCCCEEECCceEEE
Confidence 88767899999999985
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=589.86 Aligned_cols=478 Identities=58% Similarity=1.082 Sum_probs=395.0
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~ 221 (635)
+++|.+++++++++|+.+|.++++.+.|..+++ +++.. .+...+||+++.+|..+++|+++ ++++|+++|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~------~~~~~~w~~~~~~n~~~~~l~~~-~~~~p~~~Al~ 87 (637)
T PRK00174 16 MEQYKALYQESVEDPEGFWAEQAKRLDWFKPFD-TVLDW------NAPFIKWFEDGELNVSYNCLDRH-LKTRGDKVAII 87 (637)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHhcCeecCCc-ccccC------CCCCCccCCCCEeEHHHHHHHHh-hccCCCCeEEE
Confidence 589999999999999999999987788988887 44421 23356999999999999999998 78899999999
Q ss_pred EEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 006688 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (635)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~ 301 (635)
+.+.+++..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 88 ~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~ 167 (637)
T PRK00174 88 WEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRII 167 (637)
T ss_pred EECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHH
Confidence 86543235678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCc
Q 006688 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381 (635)
Q Consensus 302 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (635)
+++++++|+++......+...+...+...... .+.++.++.++.... ...+.......+.+.........+.
T Consensus 168 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (637)
T PRK00174 168 DAGAKLVITADEGVRGGKPIPLKANVDEALAN----CPSVEKVIVVRRTGG----DVDWVEGRDLWWHELVAGASDECEP 239 (637)
T ss_pred hcCCcEEEEcCccccCCcccchHHHHHHHHHh----CCCccEEEEEcCCCC----CcCcCCCCcccHHHHHhhcCCCCCc
Confidence 99999999988765555555555555444332 245566666554220 0111112233455554433333334
Q ss_pred ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 382 ~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
....++|++||+|||||||.||||+++|++++.+........++++++|++++.+|++|+.++.+.++.+|+.|+++++.
T Consensus 240 ~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 319 (637)
T PRK00174 240 EPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMF 319 (637)
T ss_pred cccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEE
Confidence 45678999999999999999999999999977665555555688999999999999999998777899999999999998
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
++.+..+++..+++.|++++||++.++|++++.|++.........++++||.+++|||++++++++++.+.++..+++++
T Consensus 320 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~ 399 (637)
T PRK00174 320 EGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIV 399 (637)
T ss_pred CCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceE
Confidence 86555568999999999999999999999999998875432334567899999999999999999999999875457899
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~ 621 (635)
+.||+||++..++.........+++++|+|++|++++|+|++|+++|.|+.|||+|+||+|++++|||+++++|.+.|+.
T Consensus 400 ~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~ 479 (637)
T PRK00174 400 DTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS 479 (637)
T ss_pred ecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc
Confidence 99999999876654433322346788999999999999999999999999999999998889999999999999999887
Q ss_pred CCCceEEcCCeEec
Q 006688 622 PFPGYYFTGDGCSR 635 (635)
Q Consensus 622 ~~~g~yrTGDlgr~ 635 (635)
..+|||+|||+|++
T Consensus 480 ~~~g~~~TGDl~~~ 493 (637)
T PRK00174 480 TFKGMYFTGDGARR 493 (637)
T ss_pred CCCCEEECCceEEE
Confidence 67899999999985
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-66 Score=552.07 Aligned_cols=405 Identities=44% Similarity=0.754 Sum_probs=361.5
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMEL 270 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~ 270 (635)
+||.++.+|..+++++++.....++++|+++.+++++. +++||+||.++++++|+.|++ .|+ +||||+|++|+.+|+
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~ 78 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEA 78 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHH
Confidence 59999999999999999843456899999999876334 999999999999999999997 568 999999999999999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCC
Q 006688 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (635)
Q Consensus 271 iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 350 (635)
+++||||+|+||+++|+.+.++++.++++++++++++||+++....+.+...++..++++... ++++.+.
T Consensus 79 ~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~----------~iv~~r~ 148 (528)
T COG0365 79 VIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS----------VVVVPRL 148 (528)
T ss_pred HHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc----------eEEeccc
Confidence 999999999999999999999999999999999999999999999988888888777665321 4444332
Q ss_pred ccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCc
Q 006688 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430 (635)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d 430 (635)
. .+|.+..+......+....+++|+++|+|||||||+||||+++|++++..........+++.++|
T Consensus 149 ~--------------~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~D 214 (528)
T COG0365 149 G--------------LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGD 214 (528)
T ss_pred c--------------ccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCC
Confidence 1 56677776666666666789999999999999999999999999999988888888889999999
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (635)
++++.++++|..|+.+.+|++|++|++++++++.+.. +++.++++|++++||+++++|+.+++|.+... .+..++++
T Consensus 215 v~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlss 291 (528)
T COG0365 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSS 291 (528)
T ss_pred EEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchh
Confidence 9999999999999988899999999999999998776 79999999999999999999999999999875 46789999
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCC
Q 006688 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g 590 (635)
||.+.++||||+++.++++.+.++ ++|.+.||+||++.......+ +.++++.|+|+||+++.|+|++|+++++|
T Consensus 292 Lr~~~SaGEPLnpe~~~w~~~~~g---~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~g~~~~~~ 365 (528)
T COG0365 292 LRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDEGNPVPPG 365 (528)
T ss_pred heeeeccCCCCCHHHHHHHHHHhC---CCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCCCCcCCCC
Confidence 999999999999999999999998 899999999999955544433 34566669999999999999999999999
Q ss_pred cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 591 ~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+ |+|+|+.|||++++|||+|||+|.+.|+.. ||+|||.+++
T Consensus 366 ~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~---~y~tGD~~~~ 406 (528)
T COG0365 366 V-GELVVRLPWPGMALTYWNDPERYKEAYFGR---WYRTGDWAER 406 (528)
T ss_pred c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc---eeecCceeEE
Confidence 9 999999999999999999999999999853 9999998864
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=571.68 Aligned_cols=474 Identities=38% Similarity=0.691 Sum_probs=385.9
Q ss_pred HHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEEEEc
Q 006688 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEA 224 (635)
Q Consensus 145 ~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~ 224 (635)
|.+++++++++|+.||.++++.+.|..+++ +++.. ..++..+||+++.+|.++++|+++ ++.+|+++|+++.+
T Consensus 3 ~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~-~~~~~-----~~~~~~~wf~~~~~n~~~~~l~~~-~~~~p~~~Al~~~~ 75 (628)
T TIGR02316 3 YEEFYQRSIEQPEAFWAEQARRIDWQTPPQ-RILDY-----SNPPFARWFAGGRTNLCHNALDRH-LDERGEQLALVTVS 75 (628)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhCCeecCCc-ccccC-----CCCCcCccCCCCEeeHHHHHHHHH-hCcCCCCeEEEEEc
Confidence 889999999999999999998899999987 44421 122356999999999999999998 78899999999864
Q ss_pred CCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcC
Q 006688 225 NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCK 304 (635)
Q Consensus 225 ~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~ 304 (635)
.+.+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++
T Consensus 76 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~ 155 (628)
T TIGR02316 76 SETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDAT 155 (628)
T ss_pred CCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcC
Confidence 33244588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCC-CCCCccc
Q 006688 305 PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVEW 383 (635)
Q Consensus 305 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 383 (635)
+++||+++......+....+..+.++.... .....+++.++.... ...........+.++..... ...+...
T Consensus 156 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (628)
T TIGR02316 156 PKLIVSADAGMRGGKVIPYKPLLDAAIAEA---QHPPPHVLLVDRGLA----PMRLIPGRDVDYAALRTQHEDAQVPVEW 228 (628)
T ss_pred ceEEEECCccccCCcccccHHHHHHHHHhc---CCCCCEEEEEeCCCC----CcCcccCccccHHHHhhccccCCCCcee
Confidence 999999887766666666666666554332 133456666654210 00111112334444433221 1222333
Q ss_pred CCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecC
Q 006688 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~ 463 (635)
..+++++||+|||||||.||||+++|++++..........++++++|++++.++++|+.++.+.++.+|+.|++++++++
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 56899999999999999999999999997665555666678999999999999999999877788999999999999987
Q ss_pred CCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccc
Q 006688 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543 (635)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~ 543 (635)
.+..+++..+++.|++++||+++++|++++.|.+.........++++||.+++|||++++++++++.+.++ ..+++.
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~---~~~~~~ 385 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG---KPVIDN 385 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC---CCEEec
Confidence 65556899999999999999999999999999876543334567899999999999999999999999887 679999
Q ss_pred cccccccccccccCCC--CCCCCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecCC-CcchhhhcCChhHHHHhh
Q 006688 544 WWQTETGGFMITPLPG--AWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETTY 619 (635)
Q Consensus 544 YG~TE~~~~~~~~~~~--~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~~-~~v~~GY~~~~e~t~~~~ 619 (635)
||+||++..++..... ....+.+++|+|++|++++|+|+ +|++++.|+.|||+|+||+ ++++.||++++++|.+.|
T Consensus 386 yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~ 465 (628)
T TIGR02316 386 YWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTY 465 (628)
T ss_pred ccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhh
Confidence 9999998544332221 11345688999999999999997 7999999999999999965 378999999999999888
Q ss_pred cCC-CCceEEcCCeEec
Q 006688 620 FKP-FPGYYFTGDGCSR 635 (635)
Q Consensus 620 ~~~-~~g~yrTGDlgr~ 635 (635)
+.. .++||+|||+|++
T Consensus 466 ~~~~~~~~~~TGD~g~~ 482 (628)
T TIGR02316 466 WSHFKRPLYSSFDWGIR 482 (628)
T ss_pred hhcCCCCEEECCceEEE
Confidence 643 2569999999985
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=566.15 Aligned_cols=477 Identities=28% Similarity=0.461 Sum_probs=372.7
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhh-cccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhcc--CCCce
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAG--LGDKV 218 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~--~pd~~ 218 (635)
+..|.++.++.++||+.||.++++. +.|.++++ +++.. .+...+||+++.+|+++++|+++ ++. +|+++
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~------~~~~~~wf~~~~~n~~~~~l~~~-~~~~~~~~~~ 78 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKYVHWDKMYD-KVYSG------DEIYPDWFKGGELNTCYNVLDIH-VKNPLKRDQD 78 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCcc-cccCC------CCCchhhCCCCeeeHHHHHHHHh-hcccCCCCce
Confidence 5779999999999999999999987 78999887 45421 22236999999999999999998 654 79999
Q ss_pred EEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHH
Q 006688 219 AIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQ 298 (635)
Q Consensus 219 Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~ 298 (635)
|+++..++++..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+
T Consensus 79 A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~ 158 (647)
T PTZ00237 79 ALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLID 158 (647)
T ss_pred EEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHH
Confidence 99986543233578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc----cc-CCCCcchhhhhcC
Q 006688 299 RIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT----KW-QDGRDIWWQDVVP 373 (635)
Q Consensus 299 il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~ 373 (635)
+++++++++||+++......+..+....+.++.... ....++++.+........... .. .......|.+++.
T Consensus 159 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (647)
T PTZ00237 159 RIETITPKLIITTNYGILNDEIITFTPNLKEAIELS---TFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIK 235 (647)
T ss_pred HHHhcCCCEEEEcccceeCCceechHHHHHHHHhcc---cCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHh
Confidence 999999999999876655555555555554443311 112345554422110000000 00 0001233444433
Q ss_pred cC-----CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHh
Q 006688 374 KY-----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (635)
Q Consensus 374 ~~-----~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i 448 (635)
.. ..........++|+++|+|||||||.||||+++|++++......+...+...++|++++.++++|+.+. ..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~-~~~ 314 (647)
T PTZ00237 236 KIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFH-GFL 314 (647)
T ss_pred hhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeH-HHH
Confidence 11 111223456789999999999999999999999998544444444445677889999999999998764 468
Q ss_pred HHHhhcCcEEEEecCCCCCC--ChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc---cccCCCCCceEEEecCCCCCH
Q 006688 449 YGPMLNGASVVVFEGAPTYP--DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY---VTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 449 ~~~L~~G~~lvl~~~~~~~~--d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~---~~~~~l~sLr~v~~gGe~l~~ 523 (635)
+.+|+.|++++++++....+ .+..+++.|++++||+++++|++++.|++..... ....++++||.+++|||++++
T Consensus 315 ~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~ 394 (647)
T PTZ00237 315 YGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEE 394 (647)
T ss_pred HHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCH
Confidence 89999999999987632111 2688999999999999999999999998754211 234568999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCC-
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP- 602 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~- 602 (635)
++++++++.++ ++++|.||+||+++..+.... ......+++|+|+||++++|+|++|++++.|+.|||+|++|++
T Consensus 395 ~~~~~~~~~~g---~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p 470 (647)
T PTZ00237 395 SIPEYIENKLK---IKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPP 470 (647)
T ss_pred HHHHHHHHhcC---CCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCc
Confidence 99999999887 789999999999865543322 1123447899999999999999999999999999999999763
Q ss_pred cchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 603 ~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++.|||++++++.+. |...+|||+|||+|++
T Consensus 471 ~~~~gy~~~~~~~~~~-f~~~~g~~~TGDlg~~ 502 (647)
T PTZ00237 471 SFATTFYKNDEKFKQL-FSKFPGYYNSGDLGFK 502 (647)
T ss_pred hhhCceeCCHHHHHHH-HhCCCCEEECCcEEEE
Confidence 9999999999999864 4445899999999974
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=563.11 Aligned_cols=476 Identities=37% Similarity=0.695 Sum_probs=386.0
Q ss_pred HHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEEE
Q 006688 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYW 222 (635)
Q Consensus 143 ~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~ 222 (635)
+.|.+++++.++||+.||.++++.+.|..+++ +++.. ..++..+||+++.+|.++++|+++ ++.+|+++|+++
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~-~~~~~-----~~~~~~~wf~~~~~n~~~~~l~~~-~~~~p~~~A~~~ 74 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPFT-QVLDY-----SNPPFARWFVGGRTNLCHNAVDRH-LAKRPEQLALIA 74 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHhCCcccCch-hhccC-----CCCCcCccCCCcEeeHHHHHHHHh-hccCCCCeEEEE
Confidence 56899999999999999999988889999987 45421 122346999999999999999998 788999999998
Q ss_pred EcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHh
Q 006688 223 EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302 (635)
Q Consensus 223 ~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~ 302 (635)
.+.+.+..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++
T Consensus 75 ~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~ 154 (629)
T PRK10524 75 VSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDD 154 (629)
T ss_pred EcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHh
Confidence 64332456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCC-CCCCc
Q 006688 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEV 381 (635)
Q Consensus 303 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 381 (635)
++++++|+++......+....+..+.++..... .....++.++.... ...........+.++..... ...+.
T Consensus 155 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (629)
T PRK10524 155 AKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ---HKPRHVLLVDRGLA----PMARVAGRDVDYATLRAQHLGARVPV 227 (629)
T ss_pred cCCcEEEEccCcccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCC----CcCcccCCcccHHHHHhcCCCCCCCc
Confidence 999999998876666666666666655543321 23456666553210 00111112233444333211 11222
Q ss_pred ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 382 ~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
....+++++||+|||||||.||||+++|++++..........++++++|++++.++++|+.++.+.++.+|+.|+++++.
T Consensus 228 ~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 307 (629)
T PRK10524 228 EWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMY 307 (629)
T ss_pred eeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEE
Confidence 33567899999999999999999999999976666565666788999999999999999998778899999999999999
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
++.+..+++..++++|++++||+++++|++++.|.+.........++++||.+++|||++++++++++.+.++ .+++
T Consensus 308 ~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~---~~v~ 384 (629)
T PRK10524 308 EGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVI 384 (629)
T ss_pred CCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC---CCeE
Confidence 8765556899999999999999999999999999876433234557899999999999999999999999887 7899
Q ss_pred cccccccccccccccCC--CCCCCCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecCCC-cchhhhcCChhHHHH
Q 006688 542 DTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWP-GAFRTLYGDHERYET 617 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~--~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~~~-~v~~GY~~~~e~t~~ 617 (635)
|.||+||++..++.... .....+++++|+|++|++++|+|+ +|+++|.|+.|||+|+||++ +++.||+++++++.+
T Consensus 385 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~ 464 (629)
T PRK10524 385 DNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVK 464 (629)
T ss_pred eccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHH
Confidence 99999999853332221 112345688999999999999998 99999999999999999653 789999999999998
Q ss_pred hhcCCC-CceEEcCCeEec
Q 006688 618 TYFKPF-PGYYFTGDGCSR 635 (635)
Q Consensus 618 ~~~~~~-~g~yrTGDlgr~ 635 (635)
.||... +|||+|||+|++
T Consensus 465 ~~~~~~~~~~~~TGDl~~~ 483 (629)
T PRK10524 465 TYWSLFGRQVYSTFDWGIR 483 (629)
T ss_pred hhhccCCCcEEEcCCcEEE
Confidence 887533 479999999975
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=661.09 Aligned_cols=517 Identities=19% Similarity=0.202 Sum_probs=409.8
Q ss_pred CCCCCCCCCccceeeecCCCceEEEeccCCCCCCCCCCCCCC-CCccccccccCCCCCCCCCcccchhhhhhcccCCcCC
Q 006688 45 KPLNKSSSPPLKLIRQSGGGGAVVMASSGCNNNNGNNSKKMK-TESFLRHVESLASFPSGAGKISRLNAVILGEALSSEE 123 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~~~~ 123 (635)
+.++....|+-+|+|++|.+|..+|+..-++.|.+....... .....+ .... .....++|||++.+.+++.+.+.
T Consensus 2956 ~~~~h~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~l~~~~~~~~~~~- 3031 (3956)
T PRK12467 2956 ALREFEHTPLADIQRWAGQGGEALFDSILVFENYPISEALKQGAPSGLR-FGAV--SSREQTNYPLTLAVGLGDTLELE- 3031 (3956)
T ss_pred HHHhccCCCHHHHHHhhccCCCCCcceEEEeecCCchhhhhccCCCCce-eecc--cccccccCceEEEeccCcceeEE-
Confidence 456777889999999999888889999888887653322111 111111 1111 13456899999999887667777
Q ss_pred CcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHH
Q 006688 124 NDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203 (635)
Q Consensus 124 ~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 203 (635)
+.|++++|+++++++|+++|.++|++++++|+.+++++.. +...+.. .++ ..++....+ ++ ...+++
T Consensus 3032 --~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~-l~~~~~~--~~~-~~~~~~~~~-----~~--~~~~~~ 3098 (3956)
T PRK12467 3032 --FSYDRQHFDAAAIERLAESFDRLLQAMLNNPAARLGELPT-LAAHERR--QVL-HAWNATAAA-----YP--SERLVH 3098 (3956)
T ss_pred --EEechhhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccC-CCHHHHH--HHH-HhhccCCCC-----CC--ccccHH
Confidence 9999999999999999999999999999999999998843 3322221 121 111211111 11 123589
Q ss_pred HHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCe
Q 006688 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (635)
Q Consensus 204 ~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~ 283 (635)
++|+++ ++++|+++||++.+ +++||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|++
T Consensus 3099 ~l~~~~-a~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~ 3171 (3956)
T PRK12467 3099 QLIEAQ-VARTPEAPALVFGD------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGA 3171 (3956)
T ss_pred HHHHHH-HHhCCCcceEeeCC------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcE
Confidence 999999 89999999999865 67999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCC
Q 006688 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (635)
Q Consensus 284 ~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (635)
||||||.+|.+|+.++++++++++||++........ . .....++.++...
T Consensus 3172 ~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~-------------~-----~~~~~~~~~~~~~------------ 3221 (3956)
T PRK12467 3172 YVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLP-------------A-----PAGDTALTLDRLD------------ 3221 (3956)
T ss_pred eecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcc-------------c-----ccCCceeeecchh------------
Confidence 999999999999999999999999999865421100 0 0111122222211
Q ss_pred CcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecc
Q 006688 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
........+.....++++|||+|||||||+||||+++|+++++.+ ......++++++|++++++|++|+.+
T Consensus 3222 --------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~ 3292 (3956)
T PRK12467 3222 --------LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHL-CWIAEAYELDANDRVLLFMSFSFDGA 3292 (3956)
T ss_pred --------hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHH-HHHHHhcCCCcCCEEEEecCccHhHH
Confidence 000111222334578999999999999999999999999976654 55556789999999999999999988
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCH
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (635)
++++|.+|+.|+++++.+ ... +++..+++.|++++||++.++|++++.|++.. ...++++||.+++|||++++
T Consensus 3293 -~~~~~~~L~~G~~l~i~~-~~~-~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~----~~~~~~~lr~~~~gGe~~~~ 3365 (3956)
T PRK12467 3293 -QERFLWTLICGGCLVVRD-NDL-WDPEELWQAIHAHRISIACFPPAYLQQFAEDA----GGADCASLDIYVFGGEAVPP 3365 (3956)
T ss_pred -HHHHHHHHhCCCEEEECC-ccc-CCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc----cccCCCCceEEEEecCCCCH
Confidence 689999999999999987 333 49999999999999999999999999998753 24467899999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCC-CC--CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GA--WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~--~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++|.+.++ +.+++|.||+||+++.++.... .. ......+||+|++|++++|+|++++++|.|++|||+|+|
T Consensus 3366 ~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G- 3442 (3956)
T PRK12467 3366 AAFEQVKRKLK--PRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGG- 3442 (3956)
T ss_pred HHHHHHHHhCC--CCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcc-
Confidence 99999998876 4789999999999876654321 11 112346899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCC-----CCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~-----~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|++.|..+ ..+||||||+|||
T Consensus 3443 -~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~ 3481 (3956)
T PRK12467 3443 -VGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481 (3956)
T ss_pred -hhhhhhccCCcccchhhccCCCCCCCCceeeccchhhee
Confidence 999999999999999988642 2349999999986
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=656.13 Aligned_cols=523 Identities=16% Similarity=0.163 Sum_probs=407.4
Q ss_pred CCCCCCCCccceeeecCC-CceEEEeccCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcccchhhhhhcccCCcCCC
Q 006688 46 PLNKSSSPPLKLIRQSGG-GGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEEN 124 (635)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~~~~~ 124 (635)
.++....|+-+++|+++. +++.+|+..-+.+|.+......... ..........+..++|||++.+.+++++.+.
T Consensus 3582 ~~~~q~~~l~~i~~~~~~~~~~~LF~t~~v~~n~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-- 3656 (4334)
T PRK05691 3582 LREYEYLPLVAIQECSELPKGQPLFDSLFVFENAPVEVSVLDRA---QSLNASSDSGRTHTNFPLTAVCYPGDDLGLH-- 3656 (4334)
T ss_pred HhhccCCCHHHHHHHhcCCCCCCCccEEEEeecCCcchhhhccc---ccccccccccccccCCCeEEEEecCCceEEE--
Confidence 456677899999998886 4556888888887775332111111 1111111112456899999999887767666
Q ss_pred cccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHH
Q 006688 125 DIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204 (635)
Q Consensus 125 ~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 204 (635)
+.|++++|+++++++|+++|.++|++++++|+.+++++.. +...+. . .++ ..++....+ ++ ...++++
T Consensus 3657 -l~y~~~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~-~~~~~~-~-~~~-~~~~~~~~~-----~~--~~~~~~~ 3724 (4334)
T PRK05691 3657 -LSYDQRYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPL-LGEQER-D-FLL-DGCNRSERD-----YP--LEQSYVR 3724 (4334)
T ss_pred -EEEchhhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCC-CCHHHH-H-HHH-HhhCCccCC-----Cc--cccCHHH
Confidence 9999999999999999999999999999999999999842 222221 1 122 111111111 11 1235899
Q ss_pred HHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeE
Q 006688 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284 (635)
Q Consensus 205 ~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~ 284 (635)
+|+++ ++++|+++||++.+ ..+||+||+++++++|+.|+++|+++|++|+|++++|+++++++|||+|+|++|
T Consensus 3725 ~~~~~-~~~~p~~~Av~~~~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691 3725 LFEAQ-VAAHPQRIAASCLD------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred HHHHH-HHhCCCceEEEcCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence 99999 89999999999765 679999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCC
Q 006688 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364 (635)
Q Consensus 285 vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 364 (635)
|||||++|.+|+.+|+++++++++|++....... ......+.. .....++..+...
T Consensus 3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~------------- 3853 (4334)
T PRK05691 3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQA---------RALLDELGC--ANRPRLLVWEEVQ------------- 3853 (4334)
T ss_pred eCCCCCChHHHHHHHHHhcCCCEEEecCcccchh---------hhhhccccc--ccccceeeecccc-------------
Confidence 9999999999999999999999999987653210 000000000 0111122211110
Q ss_pred cchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecch
Q 006688 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444 (635)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~ 444 (635)
........+.....|+++|||+|||||||+||||+++|++++++. .+....++++++|+++++++++||.+
T Consensus 3854 -------~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~fd~s- 3924 (4334)
T PRK05691 3854 -------AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQ-LSKVPYLALSEADVIAQTASQSFDIS- 3924 (4334)
T ss_pred -------cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHH-HHHHHhcCCCccceEEEecCCchhHH-
Confidence 000011122234578999999999999999999999999976655 44555789999999999999999998
Q ss_pred hHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHH
Q 006688 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS 524 (635)
Q Consensus 445 ~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~ 524 (635)
++++|.+|+.|+++++++..... ++..+++.|++++||++.++|++++.|+... ...+++||.+++|||+++++
T Consensus 3925 ~~~~~~~l~~G~~l~i~~~~~~~-~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~-----~~~~~~lr~~~~gGe~l~~~ 3998 (4334)
T PRK05691 3925 VWQFLAAPLFGARVEIVPNAIAH-DPQGLLAHVQAQGITVLESVPSLIQGMLAED-----RQALDGLRWMLPTGEAMPPE 3998 (4334)
T ss_pred HHHHHHHHhCCCEEEEcCccccC-CHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc-----cccCCCceEEEecCCcCCHH
Confidence 68999999999999999876554 8999999999999999999999999998652 23568999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccccccccccccccCC--CCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCC
Q 006688 525 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602 (635)
Q Consensus 525 l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~ 602 (635)
+++.|.+.++ +++++|.||+||+++.++.... ........+||+|++|++++|+|++++++|.|++|||||+| +
T Consensus 3999 ~~~~~~~~~~--~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G--~ 4074 (4334)
T PRK05691 3999 LARQWLQRYP--QIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAG--T 4074 (4334)
T ss_pred HHHHHHHhCC--CCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEec--c
Confidence 9999998876 5899999999999986654321 11122346799999999999999999999999999999999 9
Q ss_pred cchhhhcCChhHHHHhhcCC-----CCceEEcCCeEec
Q 006688 603 GAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSR 635 (635)
Q Consensus 603 ~v~~GY~~~~e~t~~~~~~~-----~~g~yrTGDlgr~ 635 (635)
++++||+|+|++|++.|+.+ .++||||||+|||
T Consensus 4075 ~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 4112 (4334)
T PRK05691 4075 GVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARR 4112 (4334)
T ss_pred cccccccCCcccchhhcccCCCCCCCceeeccCcceee
Confidence 99999999999999998642 3469999999986
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=543.68 Aligned_cols=471 Identities=26% Similarity=0.442 Sum_probs=375.3
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhh--cccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~A 219 (635)
++.|.++.++.++||+.+|.++++. +.|..+++ .+... ...+..+||+++.+|..++++++ .+|+++|
T Consensus 33 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~wf~~~~~n~~~~~~~~----~~~~~~A 102 (655)
T PRK03584 33 FDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYT-VVLAG-----RRMPGARWFPGARLNYAENLLRH----RRDDRPA 102 (655)
T ss_pred hHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCc-EeecC-----CCCCCCeeCCCCEeeHHHHhhcc----CCCCCeE
Confidence 4789999999999999999999875 67888876 34321 11124599999999999999864 3699999
Q ss_pred EEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHH
Q 006688 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (635)
Q Consensus 220 l~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~i 299 (635)
+++.+++ +..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 103 l~~~~~~-~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~ 181 (655)
T PRK03584 103 IIFRGED-GPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDR 181 (655)
T ss_pred EEEECCC-CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHH
Confidence 9987643 456889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcC-CCC
Q 006688 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTK 378 (635)
Q Consensus 300 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 378 (635)
+++++++++|+++....+.+.......+.++.. ..+.++.++.++..... ...........|.+++... ...
T Consensus 182 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 254 (655)
T PRK03584 182 FGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRA----ALPSLEHVVVVPYLGPA---AAAAALPGALLWEDFLAPAEAAE 254 (655)
T ss_pred HHHcCCcEEEEccccccCCcccchHHHHHHHHh----cCCCccEEEEEecCCCc---ccccccCCcccHHHHhhccccCC
Confidence 999999999999876655555555555444332 22455566665532100 0000111233455554321 112
Q ss_pred CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEE
Q 006688 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458 (635)
Q Consensus 379 ~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~l 458 (635)
.......++++++|+|||||||.||||+++|++++.+........++++++|+++++++++|+.+ ..++.+|+.|+++
T Consensus 255 ~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~L~~G~t~ 332 (655)
T PRK03584 255 LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMW--NWLVSGLLVGATL 332 (655)
T ss_pred CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhH--HHHHHHHHcCCEE
Confidence 22345577999999999999999999999999977665566666789999999999999999764 2367899999999
Q ss_pred EEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCc
Q 006688 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (635)
Q Consensus 459 vl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~ 538 (635)
++.++.+..+++..++++|++++||++.++|++++.|.+.........++++||.+++|||++++++++++.+.++. ++
T Consensus 333 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~-~~ 411 (655)
T PRK03584 333 VLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKA-DV 411 (655)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCC-Cc
Confidence 99987655569999999999999999999999999998754322234678999999999999999999999999853 47
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChh--HHH
Q 006688 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616 (635)
Q Consensus 539 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e--~t~ 616 (635)
.+++.||+||++.......+ ..+.+++++|+|++|++++|+|++|+++ .|+.|||+|+||+|+++.|||++++ ++.
T Consensus 412 ~~~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~ 489 (655)
T PRK03584 412 WLASISGGTDICSCFVGGNP-LLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYR 489 (655)
T ss_pred eEEeccChHhhhcccccCCC-CCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHH
Confidence 89999999998654332221 2235678899999999999999999999 7899999999987899999999997 455
Q ss_pred HhhcCCCCceEEcCCeEec
Q 006688 617 TTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 617 ~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++...+|||+|||+|++
T Consensus 490 ~~~~~~~~g~~~TGDl~~~ 508 (655)
T PRK03584 490 DAYFDTFPGVWRHGDWIEI 508 (655)
T ss_pred HhhhccCCCEeecCCeEEE
Confidence 6677666889999999985
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=641.94 Aligned_cols=520 Identities=17% Similarity=0.197 Sum_probs=399.2
Q ss_pred CCCCCCCCCccceeeecC----CCceEEEeccCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcccchhhhhhccc-C
Q 006688 45 KPLNKSSSPPLKLIRQSG----GGGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEA-L 119 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~-~ 119 (635)
+.++...-|+.++++..+ .+...+|+..-...+.......... ... .+ ......+.++|||++.+.+.++ +
T Consensus 1432 ~a~~hq~~p~~~i~~~l~~~r~~~~~pLFq~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~~dL~l~v~~~~~~l 1507 (3956)
T PRK12467 1432 EAQAHQDLPFEQLVEALQPERSLSHSPLFQVMFNHQRDDHQAQAQLP--GLS-VE-SLSWESQTAQFDLTLDTYESSEGL 1507 (3956)
T ss_pred HHHhccCCCHHHHHHHhcccccCCCCCceeEEEEeecccccccccCC--Cce-eE-eeecCCcccccceEEEEEecCCeE
Confidence 346677888888876543 2333455544333332211111111 111 01 1122346789999999988765 6
Q ss_pred CcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcc
Q 006688 120 SSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGIT 199 (635)
Q Consensus 120 ~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 199 (635)
.+. +.|++++|+++++++|+++|.++|++++++|+.+++++.. +...+.. +++. .++.... +++. .
T Consensus 1508 ~l~---~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~-~~~~~~~--~~~~-~~~~~~~-----~~~~--~ 1573 (3956)
T PRK12467 1508 QAS---LTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGELDL-LDEAERR--QILE-GWNATHT-----GYPL--A 1573 (3956)
T ss_pred EEE---EEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccc-cchHHhh--hhHH-hhcCCcc-----CCCc--c
Confidence 666 9999999999999999999999999999999999998842 3322221 2221 1111111 1221 2
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.+++++|+++ ++++|+++|+++.+ +.+||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|
T Consensus 1574 ~~~~~~~~~~-a~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlk 1646 (3956)
T PRK12467 1574 RLVHQLIEDQ-AAATPEAVALVFGE------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILK 1646 (3956)
T ss_pred ccHHHHHHHH-HHhCCCCeEEEeCC------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhc
Confidence 3589999999 89999999999754 7899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++|+||||.+|.+|+.+++++++++++|++....... . ..... .++.++...
T Consensus 1647 aG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~-------------~----~~~~~-~~~~~~~~~-------- 1700 (3956)
T PRK12467 1647 AGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL-------------P----LPDGL-RSLVLDQED-------- 1700 (3956)
T ss_pred cCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhC-------------c----cccCC-cEEEecccc--------
Confidence 999999999999999999999999999999976532110 0 00011 222222111
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
+.........+.....++++|||+|||||||+||||+++|+++++.. .+....++++++|++++++|++
T Consensus 1701 ----------~~~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~ 1769 (3956)
T PRK12467 1701 ----------DWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRL-CATQEAYQLSAADVVLQFTSFA 1769 (3956)
T ss_pred ----------chhccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHH-HHHHHhcCCCcccEEEEecCcc
Confidence 01111111222334568999999999999999999999999976554 5556678999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.+ ++++|.+|++|+++++.+..... ++..+++.|++++||+++++|++++.|++... ....+++||.+++|||
T Consensus 1770 fd~~-~~~~~~~L~~G~~lvi~~~~~~~-~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~~~~~~lr~v~~gGe 1844 (3956)
T PRK12467 1770 FDVS-VWELFWPLINGARLVIAPPGAHR-DPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE---QVEHPLSLRRVVCGGE 1844 (3956)
T ss_pred HHHH-HHHHHHHHhCCCEEEEcChhhcC-CHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc---ccccCCCceEEEEccc
Confidence 9998 57999999999999998765443 89999999999999999999999999987422 2345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC---CCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++++.|.+.++ +.+++|.||+||+++.++..... .......+||+|++|++++|+|++++++|.|++|||+
T Consensus 1845 ~l~~~~~~~~~~~~~--~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~GEl~ 1922 (3956)
T PRK12467 1845 ALEVEALRPWLERLP--DTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELY 1922 (3956)
T ss_pred cCCHHHHHHHHHhCC--CCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999887 47799999999999766543211 1122357899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcCC-----CCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~~-----~~g~yrTGDlgr~ 635 (635)
|+| +++++||+|+|+.|++.|... ..+||||||+|||
T Consensus 1923 i~G--~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1964 (3956)
T PRK12467 1923 LGG--VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964 (3956)
T ss_pred ecc--ccccccccCChhhhhhhCcCCCCCCCCccceeccceEEE
Confidence 999 999999999999999988642 2349999999986
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=538.44 Aligned_cols=471 Identities=23% Similarity=0.404 Sum_probs=371.9
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhh--cccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~A 219 (635)
+..|.++.++.++||+.||.++++. +.|..+++ +++.. . .+...+||+++.+|.+.+++++ .++++|
T Consensus 34 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~wf~~~~~n~~~~~~~~-----~~~~~a 102 (652)
T TIGR01217 34 EGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCA-RVVDD----R-TMPGAQWFPGARLNYAENLLRA-----AGTEPA 102 (652)
T ss_pred hhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCc-eeeeC----C-CCCCCEECCCCeeeHHHHHhcc-----CCCCeE
Confidence 4779999999999999999999887 78998887 45421 1 1224699999999999999874 368999
Q ss_pred EEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHH
Q 006688 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (635)
Q Consensus 220 l~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~i 299 (635)
+++.+++ +..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++
T Consensus 103 ~~~~~~~-~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~ 181 (652)
T TIGR01217 103 LLYVDET-HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDR 181 (652)
T ss_pred EEEECCC-CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHH
Confidence 9987643 446789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcC-CCC
Q 006688 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTK 378 (635)
Q Consensus 300 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 378 (635)
++++++++||+++......+.......+.++... .+.++.++.++....... ... .......|+++.... ...
T Consensus 182 l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 255 (652)
T TIGR01217 182 FQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKE----LPTLRAVVHIPYLGPRET-EAP-KIDGALDLEDFTAAAQAAE 255 (652)
T ss_pred HHhcCCcEEEEccccccCCcccchHHHHHHHHhc----CCCccEEEEEeCCCCccc-ccc-cccCcccHHHHHhcccCCC
Confidence 9999999999998876666666666655554332 245666666543210000 000 001123455554331 111
Q ss_pred CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEE
Q 006688 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458 (635)
Q Consensus 379 ~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~l 458 (635)
.......++|+++|+|||||||.||||+++|++++..........++++++|+++++++++|+.+ . .++.+|+.|+++
T Consensus 256 ~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~l~~G~t~ 333 (652)
T TIGR01217 256 LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-N-WLVSGLATGATL 333 (652)
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-H-HHHHHHhcCcEE
Confidence 22234567999999999999999999999999976555555555689999999999999999764 2 356899999999
Q ss_pred EEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCc
Q 006688 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (635)
Q Consensus 459 vl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~ 538 (635)
+++++.+..+++..++++|++++||++..+|++++.+...........++++||.+++|||++++++++++.+.++. +.
T Consensus 334 vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~-~~ 412 (652)
T TIGR01217 334 VLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKA-DV 412 (652)
T ss_pred EEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCC-Cc
Confidence 99986555458899999999999999999999888876643222245678999999999999999999999998864 35
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChh--HHH
Q 006688 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616 (635)
Q Consensus 539 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e--~t~ 616 (635)
.+.+.||+||++.......+ ..+...+++|+|.+|++++|+|++|+++ +|+.|||+|+||+|+++.|||++|+ ++.
T Consensus 413 ~~~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~ 490 (652)
T TIGR01217 413 WLASISGGTDICSCFAGANP-TLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYR 490 (652)
T ss_pred eEEeccCHHHHhccccCCCC-CCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCccccceeCCCccchhH
Confidence 67899999997543332222 1234567899999999999999999999 4899999999988899999999997 444
Q ss_pred HhhcCCCCceEEcCCeEec
Q 006688 617 TTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 617 ~~~~~~~~g~yrTGDlgr~ 635 (635)
+.+|...+|||+|||+|++
T Consensus 491 ~~~~~~~~g~~~tGDlg~~ 509 (652)
T TIGR01217 491 DAYFDTYPGVWRHGDWITL 509 (652)
T ss_pred HhhhcCCCCEEEcCCcEEE
Confidence 6677666899999999985
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=648.45 Aligned_cols=519 Identities=18% Similarity=0.195 Sum_probs=404.3
Q ss_pred CCCCCCCCCccceeeecCCCceEEEeccCCCCCCCCCCCCCC-CCccccccccCCCCCCCCCcccchhhhhhcccCCcCC
Q 006688 45 KPLNKSSSPPLKLIRQSGGGGAVVMASSGCNNNNGNNSKKMK-TESFLRHVESLASFPSGAGKISRLNAVILGEALSSEE 123 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~~~~ 123 (635)
..++....|+.+++++.|.++..+|+..-+.+|......... ....... ......+.++|||++.+..++++.+.
T Consensus 1864 ~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~l~~~~~~~~~~~- 1939 (5163)
T PRK12316 1864 ALREHEHTPLYDIQRWAGQGGEALFDSLLVFENYPVAEALKQGAPAGLVF---GRVSNHEQTNYPLTLAVTLGETLSLQ- 1939 (5163)
T ss_pred HHHhccCCCHHHHHHHhcCCCCCcEeeeeeeccCcchhhhhccccCCcee---cccccccccCCCeEEEEecCCcEEEE-
Confidence 345677889999999999888889998888777653222111 0111111 11112456899999999877666666
Q ss_pred CcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHH
Q 006688 124 NDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203 (635)
Q Consensus 124 ~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 203 (635)
+.|++++|+++++.+|+++|.++|++++++|+.+++++.. +...+.. +++. .++....+ ++ ...+++
T Consensus 1940 --~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-l~~~~~~--~l~~-~~~~~~~~-----~~--~~~~~~ 2006 (5163)
T PRK12316 1940 --YSYDRGHFDAAAIERLDRHLLHLLEQMAEDAQAALGELAL-LDAGERQ--RILA-DWDRTPEA-----YP--RGPGVH 2006 (5163)
T ss_pred --EecChhhCCHHHHHHHHHHHHHHHHHHHhCcccccccccC-CCHHHHH--HHHH-hcCCCCCC-----CC--CCCCHH
Confidence 9999999999999999999999999999999999999843 3322221 1221 11111111 11 122588
Q ss_pred HHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCe
Q 006688 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (635)
Q Consensus 204 ~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~ 283 (635)
++|+++ ++++|+++|+++.+ +.+||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|++
T Consensus 2007 ~~~~~~-a~~~p~~~A~~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~ 2079 (5163)
T PRK12316 2007 QRIAEQ-AARAPEAIAVVFGD------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGA 2079 (5163)
T ss_pred HHHHHH-HHhCCCCeEEEcCC------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceE
Confidence 999999 89999999999755 67999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCC
Q 006688 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (635)
Q Consensus 284 ~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (635)
||||||.+|.+|+.+++++++++++|++......... ...+. .+.++...
T Consensus 2080 ~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----------------~~~~~-~~~~~~~~------------ 2129 (5163)
T PRK12316 2080 YVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL-----------------PAGVA-RLPLDRDA------------ 2129 (5163)
T ss_pred EeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc-----------------ccccc-eEeccchh------------
Confidence 9999999999999999999999999998754211000 00111 11111100
Q ss_pred CcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecc
Q 006688 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
.........+.....++++|||+|||||||+||||+++|+++++++ ......++++++|++++++|++|+.+
T Consensus 2130 -------~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~ 2201 (5163)
T PRK12316 2130 -------EWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHC-QAAGERYELSPADCELQFMSFSFDGA 2201 (5163)
T ss_pred -------hhhccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHH-HHHHHhcCCCCcceEEEecCchHHHH
Confidence 0000111122334578999999999999999999999999976655 45555789999999999999999987
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCH
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (635)
++++|.+|+.|+++++.+.. . +++..+++.|++++||+++++|++++.|.+... .....++||.+++|||++++
T Consensus 2202 -~~~~~~~L~~G~~~~~~~~~-~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~~~lr~~~~gGe~l~~ 2275 (5163)
T PRK12316 2202 -HEQWFHPLLNGARVLIRDDE-L-WDPEQLYDEMERHGVTILDFPPVYLQQLAEHAE---RDGRPPAVRVYCFGGEAVPA 2275 (5163)
T ss_pred -HHHHHHHHhCCCEEEeCCcc-c-CCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhh---cccCCcceeEEEEecccCCH
Confidence 58999999999999776542 2 489999999999999999999999999987543 12234589999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCCCCC---CCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~---~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++|.+.++ +.+++|.||+||+++.++....... .....+||+|++|++++|+|++++++|.|++|||+|+|
T Consensus 2276 ~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G- 2352 (5163)
T PRK12316 2276 ASLRLAWEALR--PVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGG- 2352 (5163)
T ss_pred HHHHHHHHhCC--CcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecc-
Confidence 99999998876 4789999999999876654321111 11236899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCC-----CCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~-----~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|.+.|..+ .++||||||+|||
T Consensus 2353 -~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~ 2391 (5163)
T PRK12316 2353 -EGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391 (5163)
T ss_pred -hhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEE
Confidence 999999999999999998642 2459999999986
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-61 Score=637.59 Aligned_cols=519 Identities=18% Similarity=0.214 Sum_probs=407.6
Q ss_pred CCCCCCCCCccceeeecCCCceEEEeccCCCCCCCCCCCCCC-CCccccccccCCCCCCCCCcccchhhhhhcccCCcCC
Q 006688 45 KPLNKSSSPPLKLIRQSGGGGAVVMASSGCNNNNGNNSKKMK-TESFLRHVESLASFPSGAGKISRLNAVILGEALSSEE 123 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~~~~ 123 (635)
+.+.....|+-+++|+.|-+|..+|+..-+..|....+.... .....+. ......+.++|||++.+..++.+.+.
T Consensus 4412 ~~~~hq~~~l~~i~~~~~~~~~~lF~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~t~~~l~l~~~~~~~l~~~- 4487 (5163)
T PRK12316 4412 ALREHEHTPLYEIQRWAGQGGEALFDSLLVFENYPVSEALQQGAPGGLRF---GEVTNHEQTNYPLTLAVGLGETLSLQ- 4487 (5163)
T ss_pred HHhhcccCCHHHHHHHhcCCCCCCcceEEEeecCCcchhhcccCcCCcee---ccccccccCCCCeEEEEccCCcEEEE-
Confidence 345667789999999999888889988877776543221111 1111111 11113456899999999887767777
Q ss_pred CcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHH
Q 006688 124 NDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203 (635)
Q Consensus 124 ~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 203 (635)
+.|++++|+++++++|+++|.++|++++++|+.++.++.. +...+.. .++ ..++....+ ++ ...+++
T Consensus 4488 --l~y~~~~~~~~~~~~l~~~f~~~L~~l~~~p~~~~~~l~~-~~~~~~~--~~~-~~~~~~~~~-----~~--~~~~~~ 4554 (5163)
T PRK12316 4488 --FSYDRGHFDAATIERLARHLTNLLEAMAEDPQRRLGELQL-LEKAEQQ--RIV-ALWNRTDAG-----YP--ATRCVH 4554 (5163)
T ss_pred --EEEchhhCCHHHHHHHHHHHHHHHHHHhhCcccchhhhcc-CCHHHHH--HHH-hccCCCCcC-----CC--ccccHH
Confidence 9999999999999999999999999999999999999842 3322221 121 111111111 11 224589
Q ss_pred HHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCe
Q 006688 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (635)
Q Consensus 204 ~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~ 283 (635)
++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|++
T Consensus 4555 ~l~~~~-a~~~p~~~Av~~~~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~aG~~ 4627 (5163)
T PRK12316 4555 QLVAER-ARMTPDAVAVVFDE------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGA 4627 (5163)
T ss_pred HHHHHH-HHhCCCCeEEEeCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 999999 89999999999754 68999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCC
Q 006688 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (635)
Q Consensus 284 ~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (635)
|+||||.+|.+++.++++++++++||++........ ....+ .++.++...
T Consensus 4628 ~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~-----------------~~~~~-~~~~~~~~~------------ 4677 (5163)
T PRK12316 4628 YVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLP-----------------IPDGL-ASLALDRDE------------ 4677 (5163)
T ss_pred EecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcc-----------------cccCc-ceEeecchh------------
Confidence 999999999999999999999999999765321100 00011 122222110
Q ss_pred CcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecc
Q 006688 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
.+ .......+.....++++|||+|||||||+||||+++|++++.+. ......++++++|++++++|++|+.+
T Consensus 4678 ---~~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~ 4749 (5163)
T PRK12316 4678 ---DW----EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHL-HATGERYELTPDDRVLQFMSFSFDGS 4749 (5163)
T ss_pred ---hc----ccCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHH-HHHHHhcCCCcCCeEEEecCcchhhH
Confidence 00 01111122334578999999999999999999999999976654 45555799999999999999999998
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCH
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (635)
++++|.+|+.|+++++++... +++..+++.|++++||+++++|++++.|.+... ...++++||.+++|||++++
T Consensus 4750 -~~~~~~~L~~G~~lvi~~~~~--~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~~~~~~lr~v~~gGe~l~~ 4823 (5163)
T PRK12316 4750 -HEGLYHPLINGASVVIRDDSL--WDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAE---RDGEPPSLRVYCFGGEAVAQ 4823 (5163)
T ss_pred -HHHHHHHHhCCCEEEEcCccc--CCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhc---cccCCCCccEEEEecccCCH
Confidence 578999999999999987542 289999999999999999999999999987643 22367899999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCCCC---CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
++++.|.+.++ +++++|.||+||+++.++...... ......++|+|++|++++|+|++++++|.|++|||+|+|
T Consensus 4824 ~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~g~~GEl~i~G- 4900 (5163)
T PRK12316 4824 ASYDLAWRALK--PVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGG- 4900 (5163)
T ss_pred HHHHHHHHhCC--CCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEECCCCCcCCCCCCceEEECC-
Confidence 99988888776 588999999999998765432211 123457899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCC-----CCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~-----~~g~yrTGDlgr~ 635 (635)
+++++||+++|+.|++.|... ..+||||||+|||
T Consensus 4901 -~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 4939 (5163)
T PRK12316 4901 -EGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARY 4939 (5163)
T ss_pred -cccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEE
Confidence 999999999999999988642 2359999999986
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=529.27 Aligned_cols=465 Identities=26% Similarity=0.408 Sum_probs=360.7
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhh--cccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~A 219 (635)
+++|..+.++.++||+.+|.++++. +.|.++++ +++..+ ....+..+||+++.+|..+++|+++ +.++|+++|
T Consensus 119 ~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~-~v~~~~---~~~~~~~~wf~g~~ln~~~~~l~~~-~~~~pd~~A 193 (728)
T PLN03052 119 ISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPR-CILDTS---DESNPGGQWLPGAVLNVAECCLTPK-PSKTDDSIA 193 (728)
T ss_pred hhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCc-eeecCC---CCCCCCCEECCCCEeEHHHHHHHHH-hccCCCCeE
Confidence 4789999999999999999999875 46888776 454210 1112245899999999999999997 677899999
Q ss_pred EEEEcCC--CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHH
Q 006688 220 IYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297 (635)
Q Consensus 220 l~~~~~~--~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~ 297 (635)
+++.++. +...+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.
T Consensus 194 i~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~ 273 (728)
T PLN03052 194 IIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIA 273 (728)
T ss_pred EEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHH
Confidence 9987642 12357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCC-
Q 006688 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP- 376 (635)
Q Consensus 298 ~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 376 (635)
+++++++++++|+++...+..+..+....+.+.. . ..++++....... .... ......|++++....
T Consensus 274 ~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~-------~--~~~iv~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ 341 (728)
T PLN03052 274 TRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK-------A--PKAIVLPADGKSV--RVKL-REGDMSWDDFLARANG 341 (728)
T ss_pred HHHHhcCceEEEEcCccccCCcccchHHHHHHhc-------C--CcEEEEeCCCCcc--cccc-ccCCccHHHHHhcccc
Confidence 9999999999999987765555555443333221 1 2233333211000 0000 011334555443211
Q ss_pred ----CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHh
Q 006688 377 ----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452 (635)
Q Consensus 377 ----~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L 452 (635)
.........+++++||+|||||||.||||+++|++++.+..... ..++++++|+++++++++|+++. +.++.+|
T Consensus 342 ~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~-~~~~l~~~d~~~~~~~l~w~~g~-~~v~~~L 419 (728)
T PLN03052 342 LRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAW-AHLDIRKGDIVCWPTNLGWMMGP-WLVYASL 419 (728)
T ss_pred ccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHH-HhcCCCCCcEEEECCCcHHHhHH-HHHHHHH
Confidence 11112223568999999999999999999999999765543333 34789999999999999999985 6788999
Q ss_pred hcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHH
Q 006688 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532 (635)
Q Consensus 453 ~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~ 532 (635)
+.|++++++++. +++..++++|++++||++.++|++++.|.+... ....++++||.+++|||+++++...++.+.
T Consensus 420 ~~Gat~vl~~g~---p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~--~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~ 494 (728)
T PLN03052 420 LNGATLALYNGS---PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRCFGSTGEASSVDDYLWLMSR 494 (728)
T ss_pred HhCCEEEEeCCC---CCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC--cccCChhheeEEEecCCCCCHHHHHHHHHh
Confidence 999999999864 356789999999999999999999999987643 245678999999999999999999988887
Q ss_pred hCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCc--ceEEEEecCCCcchhhhcC
Q 006688 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC--SGYLCIKSSWPGAFRTLYG 610 (635)
Q Consensus 533 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~--~GEL~i~g~~~~v~~GY~~ 610 (635)
++. .+++|.||+||+++..+...+ ..+..++++|+|++|++++|+|++|+++|.|+ .|||+|++++++...+|++
T Consensus 495 ~~~--~~i~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~ 571 (728)
T PLN03052 495 AGY--KPIIEYCGGTELGGGFVTGSL-LQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLN 571 (728)
T ss_pred cCC--CCeEeeccChhhCcccccCCC-CCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccC
Confidence 762 568999999999765433222 12346788999999999999999999999985 5999999866677788888
Q ss_pred ChhHHHHhhcCCC---Cc--eEEcCCeEec
Q 006688 611 DHERYETTYFKPF---PG--YYFTGDGCSR 635 (635)
Q Consensus 611 ~~e~t~~~~~~~~---~g--~yrTGDlgr~ 635 (635)
+. .+ +.+|... +| ||+|||+|++
T Consensus 572 ~~-~~-~~yf~~~p~~~g~~~~~tGDl~~~ 599 (728)
T PLN03052 572 AD-HY-KVYFKGMPVFNGKILRRHGDIFER 599 (728)
T ss_pred ch-hh-hhhhhcCCCCCCCEEEecCceEEE
Confidence 74 33 4444321 24 9999999985
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-60 Score=580.92 Aligned_cols=493 Identities=18% Similarity=0.166 Sum_probs=371.3
Q ss_pred CCCCcccchhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccc
Q 006688 102 SGAGKISRLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSE 180 (635)
Q Consensus 102 ~~~~~~~L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 180 (635)
.+.++|||++.+.+.++ +.+. +.|++++|+++++.+++++|..+|++++++|+.++.++.. +...+. ..+.
T Consensus 152 ~~~~~~dl~~~v~~~~~~l~l~---~~y~~~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~-~~~~~~---~~~~- 223 (1389)
T TIGR03443 152 STGSTTDLTVFLTPSSPELELS---IYYNSLLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSL-ITPSQK---SLLP- 223 (1389)
T ss_pred ccCCccceEEEEEecCCcEEEE---EEEchhcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccC-CCHHHH---hhhh-
Confidence 35689999999987654 6667 9999999999999999999999999999999999998842 222211 1110
Q ss_pred cccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCC---CCccEEEeHHHHHHHHHHHHHHHHHcCCCCC
Q 006688 181 NLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257 (635)
Q Consensus 181 ~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g 257 (635)
.... ...|... ..+++++|+++ ++++|+++|+++.... .+..+++||+||+++++++|++|++.|+++|
T Consensus 224 --~~~~---~~~~~~~--~~~l~~~~~~~-a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g 295 (1389)
T TIGR03443 224 --DPTK---DLDWSGF--RGAIHDIFADN-AEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRG 295 (1389)
T ss_pred --cccc---ccCcCcc--cCcHHHHHHHH-HHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCC
Confidence 0000 1134321 23588999999 8999999999864221 1235789999999999999999999999999
Q ss_pred CEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhc
Q 006688 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKS 337 (635)
Q Consensus 258 d~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (635)
++|+|+++|++++++++|||+++|++++|+||.+|.+++.+++++++++++|+...... ....+..........
T Consensus 296 ~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~~~~~~ 369 (1389)
T TIGR03443 296 DVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT------LDQLVRDYIDKELEL 369 (1389)
T ss_pred CEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc------cchhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999998764311 001111111000000
Q ss_pred CCCccEEEEecCCccccccccccCCCCcchhhhhcCcC---CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHH
Q 006688 338 GISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY---PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414 (635)
Q Consensus 338 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~ 414 (635)
...+..+...+... .. .... .....+..... ..........++++|||+|||||||.||||+++|++++.
T Consensus 370 ~~~~~~~~~~~~~~-~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~ 442 (1389)
T TIGR03443 370 RTEIPALALQDDGS-LV--GGSL----EGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAY 442 (1389)
T ss_pred ccccceEEeccccc-cc--cccc----ccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHH
Confidence 01111111111100 00 0000 00000000000 001112234689999999999999999999999999665
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHH
Q 006688 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494 (635)
Q Consensus 415 ~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~ 494 (635)
+. .+....+++.++|+++++++++|+.+ .+++|.+|+.|+++++++.... .++..+++.|++++||+++++|++++.
T Consensus 443 ~~-~~~~~~~~~~~~d~~~~~~~~~~d~~-~~~i~~~L~~G~~l~~~~~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~ 519 (1389)
T TIGR03443 443 YF-PWMAKRFGLSENDKFTMLSGIAHDPI-QRDMFTPLFLGAQLLVPTADDI-GTPGRLAEWMAKYGATVTHLTPAMGQL 519 (1389)
T ss_pred HH-HHHHHhcCCCCCCEEEEecCceecch-HHHHHHHHhCCCEEEEcChhhc-cCHHHHHHHHHHhCCeEEEeCHHHHHH
Confidence 54 55556789999999999999999987 5789999999999999875433 388999999999999999999999999
Q ss_pred HHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCC-CC--------CCCCC
Q 006688 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GA--------WPQKP 565 (635)
Q Consensus 495 l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~--------~~~~~ 565 (635)
|.... ...+++||.+++|||++++.+.+++.+..+ +++++|.||+||++..++.... .. .....
T Consensus 520 l~~~~-----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1389)
T TIGR03443 520 LSAQA-----TTPIPSLHHAFFVGDILTKRDCLRLQTLAE--NVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDV 592 (1389)
T ss_pred HHhcc-----cccCCCccEEEEecccCCHHHHHHHHHhCC--CCEEEECccCCccceeEEEEEccccccccchhhcccCc
Confidence 87542 235789999999999999999999988776 5899999999999876553211 10 01134
Q ss_pred CCCCCCCCCCeEEEEcCC--CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCC---------------------
Q 006688 566 GSATFPFFGVQPVIVDEK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP--------------------- 622 (635)
Q Consensus 566 ~siG~pl~g~~v~IvD~~--g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~--------------------- 622 (635)
.++|+|++|++++|+|++ ++++|.|++|||+|+| |++++||+|+|+.|.+.|...
T Consensus 593 ~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G--~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1389)
T TIGR03443 593 MPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRA--GGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPERE 670 (1389)
T ss_pred CcCCCccCCCEEEEECCccCCCcCCCCCceEEEecc--cccchhcCCChhHhhhhccCCcccCccccccccccccccccc
Confidence 679999999999999964 5789999999999999 999999999999999988531
Q ss_pred -----CCceEEcCCeEec
Q 006688 623 -----FPGYYFTGDGCSR 635 (635)
Q Consensus 623 -----~~g~yrTGDlgr~ 635 (635)
.+|||||||+||+
T Consensus 671 ~~~~~~~~~y~TGDlg~~ 688 (1389)
T TIGR03443 671 FWLGPRDRLYRTGDLGRY 688 (1389)
T ss_pred ccCCCccceeecCCceeE
Confidence 3579999999985
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=579.74 Aligned_cols=460 Identities=19% Similarity=0.239 Sum_probs=366.3
Q ss_pred Ccccchhhhhhc--ccCCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccc
Q 006688 105 GKISRLNAVILG--EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENL 182 (635)
Q Consensus 105 ~~~~L~~~v~~~--~~~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 182 (635)
..+||++.+.+. +.+.+. +.|++++|+++++.+++++|.++|++++++|+.+++++.. +...+.. .+. .+
T Consensus 377 ~~~dl~l~~~~~~~~~l~~~---~~y~~~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~-~~~~~~~--~~~--~~ 448 (1296)
T PRK10252 377 PVNDLELALFPDEHGGLSIE---ILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDI-LLPGEYA--QLA--QV 448 (1296)
T ss_pred ccCCeEEEEEECCCCcEEEE---EEEChhhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCC-CCHHHHH--HHH--Hh
Confidence 346999988743 235566 9999999999999999999999999999999999998842 3222211 111 11
Q ss_pred cccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 006688 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262 (635)
Q Consensus 183 ~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai 262 (635)
+....+ +. ..++.++|+++ ++++|+++|+++.+ +.+||+||+++++++|+.|++.|+++|++|+|
T Consensus 449 ~~~~~~----~~----~~~l~~~~~~~-~~~~p~~~Al~~~~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l 513 (1296)
T PRK10252 449 NATAVE----IP----ETTLSALVAQQ-AAKTPDAPALADAR------YQFSYREMREQVVALANLLRERGVKPGDSVAV 513 (1296)
T ss_pred cCCCCC----CC----cCCHHHHHHHH-HHhCCCCeEEEcCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 111111 11 12478999998 89999999999654 67999999999999999999999999999999
Q ss_pred EcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCcc
Q 006688 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342 (635)
Q Consensus 263 ~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (635)
+++|++++++++|||+++|++|+||||.+|.+++.+++++++++++|++......... ...+.
T Consensus 514 ~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~-----------------~~~~~ 576 (1296)
T PRK10252 514 ALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD-----------------VPDLT 576 (1296)
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc-----------------CCCce
Confidence 9999999999999999999999999999999999999999999999998754211000 00110
Q ss_pred EEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHH
Q 006688 343 VCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422 (635)
Q Consensus 343 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 422 (635)
++.++. .... ....+.....++++|||+|||||||.||||+++|++++++. .+...
T Consensus 577 -~~~~~~---------------------~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~-~~~~~ 632 (1296)
T PRK10252 577 -SLCYNA---------------------PLAP-QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL-LWMQN 632 (1296)
T ss_pred -eeeccc---------------------cccc-ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHH-HHHHH
Confidence 111110 0000 00111122367899999999999999999999999966554 55566
Q ss_pred hcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc
Q 006688 423 AFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502 (635)
Q Consensus 423 ~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~ 502 (635)
.++++++|++++.+|++|+.+ ++++|.+|+.|+++++.+.... .++..+++.|++++||++.++|+++..+++.....
T Consensus 633 ~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~ 710 (1296)
T PRK10252 633 HYPLTADDVVLQKTPCSFDVS-VWEFFWPFIAGAKLVMAEPEAH-RDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPE 710 (1296)
T ss_pred hcCCCCCCEEEEeCCcchhhh-HHHHHHHHhCCCEEEECChhcc-CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccc
Confidence 799999999999999999998 5789999999999999875444 49999999999999999999999999998764321
Q ss_pred cccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC-----CCCCCCCCCCCCCCCeE
Q 006688 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-----WPQKPGSATFPFFGVQP 577 (635)
Q Consensus 503 ~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-----~~~~~~siG~pl~g~~v 577 (635)
.....+++||.+++|||++++++++.|.+.++ .+++|.||+||+++.++...... ....+.++|+|++|+++
T Consensus 711 ~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 787 (1296)
T PRK10252 711 GARQSCASLRQVFCSGEALPADLCREWQQLTG---APLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGL 787 (1296)
T ss_pred cccccCCCccEEEEecCCCCHHHHHHHHhcCC---CEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEE
Confidence 11234689999999999999999999988775 78999999999987655432111 12345789999999999
Q ss_pred EEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCC----CCceEEcCCeEec
Q 006688 578 VIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPGYYFTGDGCSR 635 (635)
Q Consensus 578 ~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~----~~g~yrTGDlgr~ 635 (635)
+|+|++++++|.|++|||+|+| +++++||+++|+.|.+.|... .++||||||+|||
T Consensus 788 ~i~d~~~~~~~~g~~Gel~i~g--~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~ 847 (1296)
T PRK10252 788 RILDARMRPVPPGVAGDLYLTG--IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW 847 (1296)
T ss_pred EEECCCCCCCCCCCceEEEecc--cccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence 9999999999999999999999 999999999999998888642 3459999999986
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=620.51 Aligned_cols=515 Identities=18% Similarity=0.213 Sum_probs=396.4
Q ss_pred CCCCCCCCCccceeeecCCCce-EEEeccCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcccchhhhhhccc--CCc
Q 006688 45 KPLNKSSSPPLKLIRQSGGGGA-VVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEA--LSS 121 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~--~~~ 121 (635)
+.+....-|+.++++..+..+. .+|+..-...+....+... ...... . ..+.....++|||++.+.+..+ +.+
T Consensus 993 ~a~~h~~~p~~~i~~~l~~~~~~~lf~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~l~l~~~~~~~~~l~~ 1068 (4334)
T PRK05691 993 GAQAHQDLPFEQLVEALPQAREQGLFQVMFNHQQRDLSALRR--LPGLLA-E-ELPWHSREAKFDLQLHSEEDRNGRLTL 1068 (4334)
T ss_pred HHHhhccCCHHHHHHHhCccCCCCceeEEEEcccCCcccccc--CCCcee-e-eecccCCcccceEEEEEEECCCCcEEE
Confidence 3455677888888888765443 2454433222221111100 001000 0 1112345689999998876433 566
Q ss_pred CCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchH
Q 006688 122 EENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201 (635)
Q Consensus 122 ~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 201 (635)
. +.|++++|+++++++|+++|.++|++++++|+.+++++.. +...+.. ++..++ ..... ....+
T Consensus 1069 ~---~~y~~~~~~~~~i~~l~~~~~~~l~~~~~~p~~~~~~l~l-~~~~~~~--~l~~~~--~~~~~--------~~~~~ 1132 (4334)
T PRK05691 1069 S---FDYAAELFDAATIERLAEHFLALLEQVCEDPQRALGDVQL-LDAAERA--QLAQWG--QAPCA--------PAQAW 1132 (4334)
T ss_pred E---EEEchhhCCHHHHHHHHHHHHHHHHHHHhCcccchhhhcC-CCHHHHH--HHHhcc--CCCCC--------CccCC
Confidence 6 8999999999999999999999999999999999999942 3322221 232222 11111 11235
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
++++|+++ ++++|+++|+++.+ +.+||+||+++++++|+.|+++|+++|++|+|+++|++++++++|||+|+|
T Consensus 1133 l~~~~~~~-a~~~p~~~Al~~~~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG 1205 (4334)
T PRK05691 1133 LPELLNEQ-ARQTPERIALVWDG------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAG 1205 (4334)
T ss_pred HHHHHHHH-HHhCCCCeEEEECC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 89999999 89999999999765 679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++|+||||.+|.+|+.+++++++++++|++........ . .... .++.++...
T Consensus 1206 ~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~-------------~----~~~~-~~~~~~~~~---------- 1257 (4334)
T PRK05691 1206 GAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLP-------------Q----AEGV-SAIALDSLH---------- 1257 (4334)
T ss_pred CEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcc-------------c----ccCc-eEEeecccc----------
Confidence 99999999999999999999999999999875421100 0 0000 112121110
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
. .......+.....++++|||+|||||||.||||+++|+++.+.. .+....++++++|++++++|++|+
T Consensus 1258 ------~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~fd 1326 (4334)
T PRK05691 1258 ------L----DSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERL-QWMQATYALDDSDVLMQKAPISFD 1326 (4334)
T ss_pred ------c----cccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHH-HHHHHhcCCCCCCEEEEeCCccHH
Confidence 0 00011112233568999999999999999999999999966544 555667899999999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.+ ++++|.+|+.|+++++.+.... +++..+++.|++++||++.++|++++.|..... ...+++||.+++|||++
T Consensus 1327 ~s-~~~~~~~L~~G~~l~i~~~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~----~~~~~~lr~~~~gGe~l 1400 (4334)
T PRK05691 1327 VS-VWECFWPLITGCRLVLAGPGEH-RDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL----AAACTSLRRLFSGGEAL 1400 (4334)
T ss_pred HH-HHHHHHHHhCCCEEEEcCcccc-CCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc----cccCCcccEEEEeecCC
Confidence 98 5799999999999999876544 499999999999999999999999999987532 34678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~ 601 (635)
+++++++|.+.++ +++++|.||+||+++.++............++|+|++|++++|+|++++++|.|++|||+|+|
T Consensus 1401 ~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G-- 1476 (4334)
T PRK05691 1401 PAELRNRVLQRLP--QVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGG-- 1476 (4334)
T ss_pred CHHHHHHHHHhCC--CcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecC--
Confidence 9999999999887 588999999999987665432212234567899999999999999999999999999999999
Q ss_pred CcchhhhcCChhHHHHhhcCC-----CCceEEcCCeEec
Q 006688 602 PGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSR 635 (635)
Q Consensus 602 ~~v~~GY~~~~e~t~~~~~~~-----~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|.+.|... ..+||||||+|||
T Consensus 1477 ~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1515 (4334)
T PRK05691 1477 AGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARW 1515 (4334)
T ss_pred cccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEE
Confidence 999999999999999988642 2349999999986
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-57 Score=482.28 Aligned_cols=474 Identities=55% Similarity=0.944 Sum_probs=414.2
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~ 221 (635)
+.+|+.++++.+++|+.+|...++.+.|...+. .. +.......+..+||+++.+|..+++++++.....++++|++
T Consensus 10 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~~ 85 (626)
T KOG1175|consen 10 LSSYREFYRFSVEDPERFWGEVAKELHWKFPWP-RC---NKDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAII 85 (626)
T ss_pred HHHHHHHHhhcccCHHHHHHHhhhhhhcccCcc-cc---ccccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcEEE
Confidence 688999999999999999999987666554443 11 22233444567999999999999999998433459999999
Q ss_pred EEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 006688 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (635)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~ 301 (635)
+.+..++....+||.||.+++.++|..|++.|+++||+|++++|+.+++++++|||.++|++.+++-..+++..+...++
T Consensus 86 ~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~ 165 (626)
T KOG1175|consen 86 FEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQ 165 (626)
T ss_pred EEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHH
Confidence 98766666666999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCc
Q 006688 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381 (635)
Q Consensus 302 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (635)
++++++|++.+...+..+.+..+..+.++..............+.+.+.. .+..|.+.+.......++
T Consensus 166 ~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~d~~~~~~~~~a~~~~~~ 233 (626)
T KOG1175|consen 166 DSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN------------RDLFWSLELKKASPEHPC 233 (626)
T ss_pred hcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc------------ccccHHHHhhhcCCCCCc
Confidence 99999999999999999999999888887665543333333333333221 155677776776777778
Q ss_pred ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 382 ~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
...+.+|+.+|+|||||||.||||.+++.+.+..........++++++|++++.+.++|+.+..+.++++|++|++++++
T Consensus 234 ~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~ 313 (626)
T KOG1175|consen 234 VPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLY 313 (626)
T ss_pred eecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEE
Confidence 88999999999999999999999999999988888888888899999999999999999999988899999999999999
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
+..+. ++..+++.+.+++||+++..|+.++.|.+.........++++||++.++||++.++.+.++.+.++. -+|+
T Consensus 314 ~g~p~--~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~--~pv~ 389 (626)
T KOG1175|consen 314 EGPPF--DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGL--DPIY 389 (626)
T ss_pred cCCCC--ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCc--cchh
Confidence 98764 9999999999999999999999999998887665556666789999999999999999999999984 2799
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCC-cceEEEEecCCC-cchhhhcCChhHHHHhh
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE-CSGYLCIKSSWP-GAFRTLYGDHERYETTY 619 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g-~~GEL~i~g~~~-~v~~GY~~~~e~t~~~~ 619 (635)
+.||+||++..++...+...+.++++.|+|.+|+.+.|+|++|++++++ +.|||+++.||| +.+++||+|++++...+
T Consensus 390 e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~y 469 (626)
T KOG1175|consen 390 ETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAY 469 (626)
T ss_pred hceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhh
Confidence 9999999999887776554368999999999999999999999999986 899999999998 99999999999999999
Q ss_pred cCCCCceEEcCCeEec
Q 006688 620 FKPFPGYYFTGDGCSR 635 (635)
Q Consensus 620 ~~~~~g~yrTGDlgr~ 635 (635)
|.+.+|+|+|||.||+
T Consensus 470 f~k~pg~y~tGD~~~r 485 (626)
T KOG1175|consen 470 FKKFPGYYFTGDGGRR 485 (626)
T ss_pred cccCCceEEecCceEE
Confidence 9999999999999985
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=508.82 Aligned_cols=408 Identities=18% Similarity=0.253 Sum_probs=305.5
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEc---CCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEA---NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~---~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA 276 (635)
+++.++|+++ ++++|+++|+.+.. +..+..+.+||+||+++++++|+.|+++|+++||+|+|+++|+++|++++||
T Consensus 45 ~t~~~~l~~~-a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 45 DSCWDVFRMS-VEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CcHHHHHHHH-HHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 3578999998 89999999998632 1112235689999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccc
Q 006688 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (635)
Q Consensus 277 ~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (635)
|+++|+++|||++.++.+++++++++++++++|+++... ......+......++.++.++........
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~ 191 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKI------------SELFKTCPNSTEYMKTVVSFGGVSREQKE 191 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHH------------HHHHHhcccccccceEEEEeCCCChHHhh
Confidence 999999999999999999999999999999999975421 11111111111235566665432100000
Q ss_pred ccccCCCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh----cCCCCCcE
Q 006688 357 NTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA----FDYKPSDV 431 (635)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~d~ 431 (635)
...........+.+++.... ...+.....++|+|+|+|||||||.||||++||++++.+........ .+++++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~ 271 (666)
T PLN02614 192 EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDV 271 (666)
T ss_pred hhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcE
Confidence 00000000123444332211 11112234689999999999999999999999999776543322211 25788999
Q ss_pred EEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccc-------
Q 006688 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT------- 504 (635)
Q Consensus 432 ~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~------- 504 (635)
+++++|++|.++... .+..+..|+++++.+ +++..+++.|+++++|+++++|++++.|.+.......
T Consensus 272 ~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 345 (666)
T PLN02614 272 YLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-----GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKK 345 (666)
T ss_pred EEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHH
Confidence 999999999888643 456788999999874 3889999999999999999999999988742110000
Q ss_pred ----------------------c-------------CCC-CCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccccc
Q 006688 505 ----------------------R-------------YSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548 (635)
Q Consensus 505 ----------------------~-------------~~l-~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE 548 (635)
. ..+ ++||.+++||+++++++ .+|.+.++ ++++++.||+||
T Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~--~~~i~~~YG~TE 422 (666)
T PLN02614 346 FVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVA--CCHVLQGYGLTE 422 (666)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhc--CCCEEeeCchHh
Confidence 0 011 68999999999999875 56777775 478999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CC--CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCc
Q 006688 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (635)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~--g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g 625 (635)
+++.++...+.+ ..+++++|+|+||++++|+| ++ +++++.|+.|||+|+| |++++|||++|+.|++.|. +|
T Consensus 423 ~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrG--p~v~~GY~~~pe~T~~~f~---dG 496 (666)
T PLN02614 423 SCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRG--KTLFSGYYKREDLTKEVLI---DG 496 (666)
T ss_pred hhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcC--CcccccccCCHHHhhhhhc---cC
Confidence 986554433322 23568999999999999998 43 4789999999999999 9999999999999999872 89
Q ss_pred eEEcCCeEec
Q 006688 626 YYFTGDGCSR 635 (635)
Q Consensus 626 ~yrTGDlgr~ 635 (635)
||+|||+|++
T Consensus 497 w~~TGDlg~~ 506 (666)
T PLN02614 497 WLHTGDVGEW 506 (666)
T ss_pred CcccceEEEE
Confidence 9999999985
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=490.89 Aligned_cols=407 Identities=39% Similarity=0.702 Sum_probs=334.3
Q ss_pred ccCCCCcchHHHHHHhhhhhc-cCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH
Q 006688 192 EWFKGGITNICYNCLDRNIEA-GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL 270 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~-~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~ 270 (635)
+|+++..+|.++++++++ ++ .+|+++|+++.+. +..+++||+||.++++++|..|+++|+++||+|+|+++|++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~--~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~ 111 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRH-ADGGRKDKVALRYLDA--SRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPEL 111 (570)
T ss_pred ccCCCCceeHHHHHHHHh-hccCCCCceEEEEECC--CCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHH
Confidence 788888899999999998 55 5899999998653 2347899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCC
Q 006688 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (635)
Q Consensus 271 iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 350 (635)
++++|||+++|++++|+++.++.+++.+++++++++++|+++........ ...+.++.++.++..
T Consensus 112 ~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 176 (570)
T PRK04319 112 YFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---------------DDLPSLKHVLLVGED 176 (570)
T ss_pred HHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---------------hcCCCceEEEEECCC
Confidence 99999999999999999999999999999999999999998764321100 012344555555432
Q ss_pred ccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCc
Q 006688 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430 (635)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d 430 (635)
.. .......+.+.+.......+.....++++++|+|||||||.||||+++|++++.+.. .....++++++|
T Consensus 177 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~-~~~~~~~~~~~d 247 (570)
T PRK04319 177 VE--------EGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ-TGKYVLDLHEDD 247 (570)
T ss_pred cC--------CCcCccCHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHH-HHHHhcCCCCCc
Confidence 10 011122344443332222333345678999999999999999999999999776543 344568899999
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (635)
++++..++.|..++.+.++.+|..|+++++.+.. +++..+++.|+++++|+++++|++++.|++.........++++
T Consensus 248 ~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 324 (570)
T PRK04319 248 VYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR---FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSS 324 (570)
T ss_pred eEEecCChHHhhCchHHHHHHHhcCceEEEECCC---CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCccc
Confidence 9999999999998888899999999999997642 5999999999999999999999999999876432233456789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCC
Q 006688 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g 590 (635)
||.+++||+++++++++++.+.++ .++++.||+||++..++..... ....++++|+|+||++++|+|++++++|+|
T Consensus 325 lr~~~~gG~~l~~~~~~~~~~~~g---~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g 400 (570)
T PRK04319 325 LRHILSVGEPLNPEVVRWGMKVFG---LPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVDDQGNELPPN 400 (570)
T ss_pred ceEEEEcccCCCHHHHHHHHHHhC---CCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEECCCCCCCCCC
Confidence 999999999999999999999887 7899999999998765443322 234678899999999999999999999999
Q ss_pred cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 591 ~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.|||+|+|+++++++||+++++.+.+.|. +|||+|||+|++
T Consensus 401 ~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~---~gw~~TGDl~~~ 442 (570)
T PRK04319 401 RMGNLAIKKGWPSMMRGIWNNPEKYESYFA---GDWYVSGDSAYM 442 (570)
T ss_pred CceEEEEcCCCChHHhHhcCCHHHhhhhhc---CCceEeCcEEEE
Confidence 999999997667899999999999988763 789999999985
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=446.56 Aligned_cols=405 Identities=20% Similarity=0.250 Sum_probs=338.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++++.. +++.||+.|+++... +.++||+||.+.++++|+.|.++|+++||||+|..||+.+|+..+|||.++
T Consensus 51 Tigq~l~~~-t~~v~dkea~Vf~~e----g~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~A 125 (596)
T KOG1177|consen 51 TIGQLLETT-TERVPDKEAAVFDHE----GIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARA 125 (596)
T ss_pred cHHHHHHHH-hhccCcceEEEEeec----cchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHh
Confidence 578889887 889999999998653 366999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHh---------hhcCCCccEEEEecCCc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC---------AKSGISVDVCLTYENQS 351 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~vi~~~~~~ 351 (635)
|.+.+++||.++.+++++.|+..+++++|+...+.. .++.+.+.+...+. ....+.+.+++..++..
T Consensus 126 G~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~----~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~ 201 (596)
T KOG1177|consen 126 GLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKT----QNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH 201 (596)
T ss_pred ceEEeccCcccccHHHHHHHhhcCeEEEEccchhhh----chHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC
Confidence 999999999999999999999999999998776532 22333344433332 23346677887776322
Q ss_pred cccccccccCCCCcchhhhhcCcCCCC------CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC
Q 006688 352 AMTRENTKWQDGRDIWWQDVVPKYPTK------CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (635)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 425 (635)
+ ..+...++|.+.....+ .......|+|++.|.|||||||.|||+.+||-|++++.... ..+++
T Consensus 202 ~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~v-g~r~g 271 (596)
T KOG1177|consen 202 P---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAV-GARAG 271 (596)
T ss_pred c---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHH-HHHhC
Confidence 1 11233444544433221 11234678999999999999999999999999988887554 45799
Q ss_pred CCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccccc
Q 006688 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (635)
Q Consensus 426 ~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~ 505 (635)
+.+.+|++...|++|.+|.+..++++|+.|+|+|++... |++...++.|.++++|.++.+|+++..|++.+. ...
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~---f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~--~~~ 346 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPS---FDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQ--KQQ 346 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCC---CChHHHHHHHHhhceEEEecChHHHHHHhcchh--hcc
Confidence 999889999999999999889999999999999998764 699999999999999999999999999998865 467
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC-CCCCCCCCCCCCCCCeEEEEcCCC
Q 006688 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKG 584 (635)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~siG~pl~g~~v~IvD~~g 584 (635)
.+++++|..+.||+++|+++++.+.+.+.. ..+...||+||++...+.+..++ ...+..++|+.+++.+..|+|..|
T Consensus 347 ~~~s~lr~~vigGa~~s~eLlk~iv~~~~m--~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g 424 (596)
T KOG1177|consen 347 VDLSSLRKGVIGGAPVSPELLKLIVNQMNM--KDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDG 424 (596)
T ss_pred CchhhhhhheeCCCCCCHHHHHHHHHhhCc--eeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCC
Confidence 889999999999999999999999987653 34778999999998777765443 234567899999999999999999
Q ss_pred CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.++|.|..|||||+| ++.+.|||+++++|.+..- .|.||+|||+|++
T Consensus 425 ~~v~~~~~Gel~iRG--Y~tMl~Ywg~~~kT~eti~--~drW~~TGDi~~m 471 (596)
T KOG1177|consen 425 SEVPLGTKGELLIRG--YSTMLGYWGEEEKTKETIG--NDRWYDTGDIAVM 471 (596)
T ss_pred CccccCCCceEEEEe--chhheeecCCcccchhhcc--cccceecCceEEE
Confidence 999999999999999 9999999999999987743 3789999999874
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=470.66 Aligned_cols=388 Identities=25% Similarity=0.377 Sum_probs=309.2
Q ss_pred hccCCCc-eEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEec
Q 006688 211 EAGLGDK-VAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIG--VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (635)
Q Consensus 211 a~~~pd~-~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~G--v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpl 287 (635)
+...+++ +++++... .++.+||+|+..++.++|..|.++| +++||+|+|++||++++++++|||+.+|+++.|+
T Consensus 26 ~~~~~~~~~~~i~~~~---~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~ 102 (537)
T KOG1176|consen 26 AFVYLDRNTSLVYQDS---DGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL 102 (537)
T ss_pred ccccccCcceEEEecC---CCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence 4445555 78887652 2589999999999999999999876 8999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC-CCCcc
Q 006688 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ-DGRDI 366 (635)
Q Consensus 288 d~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~ 366 (635)
+|.+.+.++.+.+++++++++|++.... ..+.++...+ . ..++++..... ..... .....
T Consensus 103 Np~~~~~ei~~~~~~s~~kiif~d~~~~---------~~i~~~~~~~-----~-~~i~~l~~~~~----~~~~~~~~~~~ 163 (537)
T KOG1176|consen 103 NPRLTASEIAKQLKDSKPKLIFVDEDFY---------DKISEATSKL-----A-LKIIVLTGDEG----VISISDLVEDL 163 (537)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcCchH---------HHHHHHHhhc-----C-CceEEEecccC----ccccccccccc
Confidence 9999999999999999999999988753 2222222211 1 33444433210 00000 00011
Q ss_pred h-hhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchh
Q 006688 367 W-WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445 (635)
Q Consensus 367 ~-~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~ 445 (635)
. +.+......... ......+|++.|+|||||||.||||++||++++.+...... ...++..|+.++++|++|..|+.
T Consensus 164 ~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~-~~~~~~~~v~l~~lPl~H~~Gl~ 241 (537)
T KOG1176|consen 164 DAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKI-GWELTSDDVYLCTLPLFHIYGLI 241 (537)
T ss_pred cchhhccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhh-cccCCCCceEEEechHHHHhHHH
Confidence 1 333333322222 45567799999999999999999999999997776544333 46677789999999999999975
Q ss_pred HHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHH
Q 006688 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (635)
Q Consensus 446 ~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l 525 (635)
. ++.+++.|++.++.... |++..+++.|++|+||+++++|.++..|++.+. ....+++++|.+++||+++++++
T Consensus 242 ~-~~~~~~~~~~~ii~~~~---f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~--~~~~~l~sl~~v~~gga~~~~~~ 315 (537)
T KOG1176|consen 242 T-LLLSLLAGGTTIICLRK---FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI--VKKYDLSSLRSVLSGGAPLSPAT 315 (537)
T ss_pred H-HHHHHHhCCceEEECCC---CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc--cCcccCCccEEEEecCCCCCHHH
Confidence 4 45544444444444332 699999999999999999999999999999863 36789999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcch
Q 006688 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF 605 (635)
Q Consensus 526 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~ 605 (635)
++++.+++| ...+.+.||+||+++.++.+...+. .+++++|++++|.+++|.++.|+.+++++.|||||+| ++++
T Consensus 316 ~~~~~~~l~--~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg--~~im 390 (537)
T KOG1176|consen 316 LEKVKERLP--NVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRG--PQVM 390 (537)
T ss_pred HHHHHHhCC--CceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeCCCCCCCCCCCceEEEEEC--cccc
Confidence 999999998 4789999999999977666544332 6899999999999999999999999999999999999 9999
Q ss_pred hhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 606 RTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 606 ~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.|||+||+.|++.|.+ +|||||||+|++
T Consensus 391 kGY~~NpeaT~~~~~~--~GW~~TGDiGy~ 418 (537)
T KOG1176|consen 391 KGYLKNPEATKEAFDD--DGWFHTGDLGYF 418 (537)
T ss_pred hhhcCChHHHHhhccc--CCccccCceEEE
Confidence 9999999999999864 599999999974
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=498.92 Aligned_cols=405 Identities=17% Similarity=0.184 Sum_probs=308.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcCC
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI---GVKKG-----------DAVIIYLPM 266 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~---Gv~~g-----------d~Vai~~~n 266 (635)
++.++|.++ ++++|+++|+++.. .+..++.+||+||.++++++|+.|.++ |+++| |+|+|+++|
T Consensus 62 ~l~~~l~~~-~~~~p~~~Al~~~~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 62 HIMKLLLEK-YKLNNNKIAIVEHS-CGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred hHHHHHHHH-HhhcCCceeEeccC-CCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 578999998 89999999998642 112357899999999999999999974 99999 999999999
Q ss_pred CchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEE
Q 006688 267 LMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346 (635)
Q Consensus 267 s~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 346 (635)
+++|+++++||+++|++.||+++.++.+++.++|+++++++||++... +.... ......+.+++++.
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~------------~~~l~-~~~~~~~~l~~ii~ 206 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDL------------VEGLL-ERKNELPHLKKLII 206 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHH------------HHHHH-HhhccCCCceEEEE
Confidence 999999999999999999999999999999999999999999986432 11111 11223356778888
Q ss_pred ecCCcccc-----------------ccccc-----------------------cC-----------------CCCcchhh
Q 006688 347 YENQSAMT-----------------RENTK-----------------------WQ-----------------DGRDIWWQ 369 (635)
Q Consensus 347 ~~~~~~~~-----------------~~~~~-----------------------~~-----------------~~~~~~~~ 369 (635)
++...... ..... +. ......++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 286 (746)
T PTZ00342 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFD 286 (746)
T ss_pred ECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHH
Confidence 76421100 00000 00 00000112
Q ss_pred hhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh-cCCCCCcEEEEeCCcceecchhHHh
Q 006688 370 DVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCTADCGWITGHSYVT 448 (635)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~d~~l~~~~l~~~~g~~~~i 448 (635)
+..+......+.....|+|+|+|+|||||||.||||++||+|++.++....... ....+.|++++++|++|++++.. .
T Consensus 287 ~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~ 365 (746)
T PTZ00342 287 DMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-A 365 (746)
T ss_pred HHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-H
Confidence 211111111122345689999999999999999999999999876654332211 12235689999999999998754 5
Q ss_pred HHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCc------cccc------------------
Q 006688 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN------EYVT------------------ 504 (635)
Q Consensus 449 ~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~------~~~~------------------ 504 (635)
+.+++.|+++++.+. ++..+++.|+++++|+++++|.+++.|.+... ....
T Consensus 366 ~~~l~~G~~i~~~~~-----~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 440 (746)
T PTZ00342 366 YLSFMLGGTINIWSK-----DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGG 440 (746)
T ss_pred HHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCC
Confidence 678999999999863 78999999999999999999999999875210 0000
Q ss_pred ----------------cCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCC
Q 006688 505 ----------------RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568 (635)
Q Consensus 505 ----------------~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~si 568 (635)
..-.++||.+++||+++++++.++|...++ +++++.||+||+++.++...+. ..+++++
T Consensus 441 ~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g---~~i~~gYGlTEt~~~~~~~~~~--~~~~gsv 515 (746)
T PTZ00342 441 FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN---VNYYQGYGLTETTGPIFVQHAD--DNNTESI 515 (746)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC---CCEEEeeccCcccceeeeccCC--CCCcccc
Confidence 001268999999999999999999998887 7899999999998765544332 3567899
Q ss_pred CCCC-CCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 569 TFPF-FGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 569 G~pl-~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|+ |+++++|+| +++...+.+..|||+|+| |+++.|||++|+.|++.|.. +|||+|||+|++
T Consensus 516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrG--p~v~~GY~~~pe~T~~~f~~--dGW~~TGDig~~ 580 (746)
T PTZ00342 516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKS--DSIFSGYFLEKEQTKNAFTE--DGYFKTGDIVQI 580 (746)
T ss_pred cCcCCCcEEEEEecccccccCCCCCceEEEEec--CcccccccCChhhhhhhcCc--CCcccCCcEEEE
Confidence 9998 999999998 544555555679999999 99999999999999999853 899999999985
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=499.65 Aligned_cols=405 Identities=18% Similarity=0.183 Sum_probs=310.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEE---cCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWE---ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
++.++|+++ ++++|+++|+.+. ++..+..+.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||
T Consensus 45 tl~~~l~~~-a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 123 (651)
T PLN02736 45 TLHDNFVYA-VETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123 (651)
T ss_pred CHHHHHHHH-HHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 478999998 8999999999542 211123567999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
+++|++++|+++.++.+++.+++++++++++|++.... ..+... ....+.++.++.++.........
T Consensus 124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~---------~~~~~~----~~~~~~l~~ii~~~~~~~~~~~~ 190 (651)
T PLN02736 124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTL---------NTLLSC----LSEIPSVRLIVVVGGADEPLPSL 190 (651)
T ss_pred HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHH----hhcCCCceEEEEECCCchhhhhh
Confidence 99999999999999999999999999999999975431 111111 12234566666654321000000
Q ss_pred cccCCCCcchhhhhcCcCCC-CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 358 TKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
..........+++++..... ..+.....++|+|+|+|||||||.||||++||++++.+.. .....+++.++|++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~-~~~~~~~~~~~d~~l~~l 269 (651)
T PLN02736 191 PSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVA-GSSLSTKFYPSDVHISYL 269 (651)
T ss_pred hccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHH-HHHhccCCCCCCEEEEeC
Confidence 00000112234444332111 1122345789999999999999999999999999766553 444567889999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccc-------------
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV------------- 503 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~------------- 503 (635)
|++|++++. .++.+|+.|+++++.+. ++..+++.|+++++|+++.+|++++.|.+......
T Consensus 270 Pl~h~~~~~-~~~~~l~~G~~i~~~~~-----~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (651)
T PLN02736 270 PLAHIYERV-NQIVMLHYGVAVGFYQG-----DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNA 343 (651)
T ss_pred CHHHHHHHH-HHHHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999864 67889999999999763 78899999999999999999999988865311000
Q ss_pred -------------cc-------------CCC-CCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccccccccccccc
Q 006688 504 -------------TR-------------YSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556 (635)
Q Consensus 504 -------------~~-------------~~l-~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 556 (635)
.. ..+ ++||.+++||+++++++.+++.+.++ +++++.||+||+++.++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~~~~ 420 (651)
T PLN02736 344 AYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG---GRVLEGYGMTETSCVISGM 420 (651)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC---CCeEEEechHHhchheecc
Confidence 00 011 48999999999999999999998887 7899999999998765543
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEcC-CCC---ccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCe
Q 006688 557 LPGAWPQKPGSATFPFFGVQPVIVDE-KGV---EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632 (635)
Q Consensus 557 ~~~~~~~~~~siG~pl~g~~v~IvD~-~g~---~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDl 632 (635)
... ..+++++|+|+||++++|+|+ ++. ...++..|||+|+| |++++|||++|+.|.+.|.. +|||+|||+
T Consensus 421 ~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrg--p~v~~GY~~~~~~t~~~~~~--dgw~~TGDl 494 (651)
T PLN02736 421 DEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRG--PIIFKGYYKDEVQTREVIDE--DGWLHTGDI 494 (651)
T ss_pred CCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecC--CccccccccCHHHHHhhhcc--CCCeeccce
Confidence 332 246788999999999999993 322 22234479999999 99999999999999888743 899999999
Q ss_pred Eec
Q 006688 633 CSR 635 (635)
Q Consensus 633 gr~ 635 (635)
|++
T Consensus 495 g~~ 497 (651)
T PLN02736 495 GLW 497 (651)
T ss_pred EEE
Confidence 985
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=479.21 Aligned_cols=394 Identities=29% Similarity=0.383 Sum_probs=313.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++++++ ++.+|+++|+++.+.. .++||+||+++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 12 ~~~~~l~~~-a~~~~~~~a~~~~~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 12 TLASLLERA-ARRNPDRPALIFLGRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred cHHHHHHHH-HHhCCCceEEEEcCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 478889888 8999999999987632 26999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++||+|.+..+++.+++++++++++++++... ....... ...+....+.......
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~--------- 144 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA---------ALLEAVA----EALPVVLVVLLVGDAD--------- 144 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccch---------hHHHHHh----ccCCcceEEEeccccc---------
Confidence 99999999999999999999999999999987631 1111111 1111222222211111
Q ss_pred CCCCc-chhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC--CCCCcEEEEeC
Q 006688 361 QDGRD-IWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD--YKPSDVYWCTA 436 (635)
Q Consensus 361 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~~d~~l~~~ 436 (635)
... ..+.+...... .........++|+|+|+|||||||.||||++||++++.+... ....+. +++.|+++..+
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~-~~~~~~~~~~~~d~~l~~l 221 (534)
T COG0318 145 --DRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAG-IAAALGGGLTPDDVVLSWL 221 (534)
T ss_pred --ccccccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHH-HHHHhcccCCCCceEEEec
Confidence 000 12222322111 111112267999999999999999999999999998877544 444567 89999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC-ceEEE
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS-LRVLG 515 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s-Lr~v~ 515 (635)
|++|++|+...++.+++.|+++++.++.. |++..++..+.++++|++.++|+++..|++.... ...++.+ ||.++
T Consensus 222 Pl~H~~Gl~~~~~~~~~~G~~~v~~~~~~--f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~--~~~~~~~~lr~~~ 297 (534)
T COG0318 222 PLFHIFGLIVGLLAPLLGGGTLVLLSPEP--FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK--DDDDLSSSLRLVL 297 (534)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEeCCCCC--cCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc--CccccccceEEEE
Confidence 99999998777777799999999987422 5999999999999999999999999999988653 2333444 99999
Q ss_pred ecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCC-ccCCCcceE
Q 006688 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGV-EIEGECSGY 594 (635)
Q Consensus 516 ~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~-~vp~g~~GE 594 (635)
.||++++++++++|.++++. .++++.||+||++..++.........+.+++|+|+||++++|+|+++. ++| |.+||
T Consensus 298 ~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGe 374 (534)
T COG0318 298 SGGAPLPPELLERFEERFGP--IAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGE 374 (534)
T ss_pred ecCCcCCHHHHHHHHHHhCC--CceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceE
Confidence 99999999999999999983 579999999999976665533220135677899999999999997665 566 99999
Q ss_pred EEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 595 L~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|+| |+++.|||++|+.|.+.|.. +|||+|||+|++
T Consensus 375 i~irg--p~v~~GY~~~pe~t~~~f~~--~gW~~TGDlg~~ 411 (534)
T COG0318 375 IWVRG--PNVMKGYWNRPEATAEAFDE--DGWLRTGDLGYV 411 (534)
T ss_pred EEEEC--chhhhhhcCChHHHHHhhcc--CCeeeecceEEE
Confidence 99999 99999999999999996532 599999999964
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=494.35 Aligned_cols=407 Identities=18% Similarity=0.242 Sum_probs=303.5
Q ss_pred hHHHHHHhhhhhccCCCceEEEEE---cCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWE---ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA 276 (635)
.++.++|+++ ++++|+++|+.+. ++..+..+.+||+||.++++++|+.|+++|+++||+|+|+++|+++|++++||
T Consensus 43 ~t~~~~l~~~-~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 43 DSPWQFFSDA-VKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCHHHHHHHH-HHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 4578899998 8999999999753 11113456899999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccc
Q 006688 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (635)
Q Consensus 277 ~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (635)
|+++|+++|||++.++.+++.+++++++++++|+++... ..+.... ......++.++.++........
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~---------~~~~~~~---~~~~~~l~~ii~~~~~~~~~~~ 189 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI---------SSILSCL---PKCSSNLKTIVSFGDVSSEQKE 189 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH---------HHHHHhh---hhCCCCCEEEEEECCCChhhhh
Confidence 999999999999999999999999999999999865421 1111111 1111246667766532100000
Q ss_pred ccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC-----CCCCcE
Q 006688 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSDV 431 (635)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-----~~~~d~ 431 (635)
...........+.++..............++|+|+|+|||||||.||||++||++++.+.... ...++ +.++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~-~~~~~~~~~~~~~~d~ 268 (660)
T PLN02861 190 EAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLST-DHLLKVTDRVATEEDS 268 (660)
T ss_pred hhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHH-HhccccccccCCCCCE
Confidence 000000001233333322111112223468999999999999999999999999977654332 22332 467899
Q ss_pred EEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCc-----------
Q 006688 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN----------- 500 (635)
Q Consensus 432 ~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~----------- 500 (635)
+++++|++|.+++... +.+|+.|+++++.+ +++..+++.|+++++|+++++|++++.|.+...
T Consensus 269 ~l~~lPl~H~~~~~~~-~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 342 (660)
T PLN02861 269 YFSYLPLAHVYDQVIE-TYCISKGASIGFWQ-----GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRK 342 (660)
T ss_pred EEEECcHHHHHHHHHH-HHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHH
Confidence 9999999999987654 45799999999874 388999999999999999999999998864100
Q ss_pred ------------------------cccccC-------CC-CCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccccc
Q 006688 501 ------------------------EYVTRY-------SR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548 (635)
Q Consensus 501 ------------------------~~~~~~-------~l-~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE 548 (635)
...+.. .+ .++|.+++||+++++++. .|.+.++ ...+++.||+||
T Consensus 343 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~--~~~l~~~YG~TE 419 (660)
T PLN02861 343 KLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTS--CSVLSQGYGLTE 419 (660)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHc--CCCeeEecchhh
Confidence 000000 11 589999999999999975 5667776 257999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCeEEEEc--CCC-CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCc
Q 006688 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD--EKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (635)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD--~~g-~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g 625 (635)
+++.++...... ..+.+++|+|+||++++|+| ++| ..++.+..|||+|+| |+++.|||++|+.|.+.|. +|
T Consensus 420 ~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrG--p~v~~GY~~~pe~T~~~f~---dG 493 (660)
T PLN02861 420 SCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRG--NTLFSGYHKRQDLTEEVLI---DG 493 (660)
T ss_pred hhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcC--CcccccccCCHHHHHhhhh---cc
Confidence 986554432221 23568999999999999998 444 344566689999999 9999999999999999883 79
Q ss_pred eEEcCCeEec
Q 006688 626 YYFTGDGCSR 635 (635)
Q Consensus 626 ~yrTGDlgr~ 635 (635)
||+|||+|++
T Consensus 494 w~~TGDlg~~ 503 (660)
T PLN02861 494 WFHTGDIGEW 503 (660)
T ss_pred CcccCceEEE
Confidence 9999999985
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=469.97 Aligned_cols=391 Identities=21% Similarity=0.293 Sum_probs=298.2
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
..+..++.++ ++.+|+.+|+..... +..+.+||+|+.+++.++|+.|+++|+++||+|+|++.|+++|+++.+||+.
T Consensus 16 ~~~~~~~~~~-~~~~~~~~a~~~~~~--~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~ 92 (613)
T COG1022 16 HTLPKRLAER-VKDRPDGVALMYKEL--GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILA 92 (613)
T ss_pred ccHHHHHHHH-hhcCCcceeEeeecC--CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3466777777 899999999987652 6789999999999999999999999997799999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEe----cCCcccc-
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY----ENQSAMT- 354 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~----~~~~~~~- 354 (635)
+|++.||++++..+++++++|+++++++||++..... +.+......+ +.+...... +......
T Consensus 93 ~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 160 (613)
T COG1022 93 LGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELL--------DLVLPVLEDC----PKVVDLIVIIDLVREAVEAKA 160 (613)
T ss_pred cCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHH--------HHHHhhhccc----cchhhhhhhhhhhhhccchhh
Confidence 9999999999999999999999999999999875421 1111111100 001000000 0000000
Q ss_pred ccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC-CCCCcEEE
Q 006688 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYW 433 (635)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~~d~~l 433 (635)
.............+ ............+..++|+|.|+|||||||.||||++||+|++.++... ..... ++++|+++
T Consensus 161 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~-~~~~~~~~~~d~~L 237 (613)
T COG1022 161 LVLEVFPDEGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGI-DEVLPPIGPGDRVL 237 (613)
T ss_pred ccccccccccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHH-HhhCCCCCCCcEEE
Confidence 00000000001111 1111111222245689999999999999999999999999988776544 44675 88999999
Q ss_pred EeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc-----------
Q 006688 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY----------- 502 (635)
Q Consensus 434 ~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~----------- 502 (635)
+++|++|++..+++....+..|+++...+ ++..+++.+++.++|++..+|.+|+.+.+...+.
T Consensus 238 sfLPlaHi~Er~~~~~~~~~~g~~~~~~~------~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~i 311 (613)
T COG1022 238 SFLPLAHIFERAFEGGLALYGGVTVLFKE------DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKL 311 (613)
T ss_pred EeCcHHHHHHHHHHHHHHhhcceEEEecC------CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999987765444555555555432 8999999999999999999999998775432100
Q ss_pred ------------------------------------cccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccc
Q 006688 503 ------------------------------------VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546 (635)
Q Consensus 503 ------------------------------------~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~ 546 (635)
.+... .++|++++||++|++++...++.. +++++++||+
T Consensus 312 f~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l----Gi~i~eGYGl 386 (613)
T COG1022 312 FRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL----GIPILEGYGL 386 (613)
T ss_pred HHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc----CCCeEEEecc
Confidence 00111 489999999999999999988775 4899999999
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCce
Q 006688 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY 626 (635)
Q Consensus 547 TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~ 626 (635)
||++..++.+.+. ..+.+++|+|+|+++++|+| .|||+|+| |+|++|||++|+.|++.|.. |||
T Consensus 387 TEts~~~~v~~~~--~~~~gtvG~p~p~~evKI~d----------~GEilVRG--~~Vm~GYyk~pe~Taeaf~~--DGW 450 (613)
T COG1022 387 TETSAVVSVNPPD--RFVLGTVGKPLPGIEVKIAD----------DGEILVRG--PNVMKGYYKNPEATAEAFTE--DGW 450 (613)
T ss_pred cccccceEEcccc--CcccCCcCCcCCCceEEEcc----------CceEEEec--chhcchhcCChHHHhhhccc--cCC
Confidence 9999888776554 36789999999999999999 69999999 99999999999999999975 999
Q ss_pred EEcCCeEec
Q 006688 627 YFTGDGCSR 635 (635)
Q Consensus 627 yrTGDlgr~ 635 (635)
|+|||+|.+
T Consensus 451 f~TGDlg~~ 459 (613)
T COG1022 451 FRTGDLGEL 459 (613)
T ss_pred cccCceeEE
Confidence 999999864
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=475.05 Aligned_cols=402 Identities=23% Similarity=0.310 Sum_probs=322.1
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~i 271 (635)
.|+.. ++.++|+++ ++.+|+++|+++.+...+..+.+||+||.++++++|+.|++.|+++||+|+++++|+++++
T Consensus 20 ~~~~~----~l~~~l~~~-a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~ 94 (547)
T PRK13295 20 HWHDR----TINDDLDAC-VASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFT 94 (547)
T ss_pred CCcCC----CHHHHHHHH-HHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHH
Confidence 56642 377889888 8999999999975432233478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCc
Q 006688 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (635)
Q Consensus 272 va~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (635)
+++|||+++|++++|++|.++.+++.+++++++++++|+++.... .+..+.+.+. ....+.+..++.++...
T Consensus 95 ~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 166 (547)
T PRK13295 95 VLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRG----FDHAAMARRL----RPELPALRHVVVVGGDG 166 (547)
T ss_pred HHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccC----cchHHHHHHH----hhhCCCcceEEEecCCC
Confidence 999999999999999999999999999999999999999876421 0111111111 11224455565554321
Q ss_pred cccccccccCCCCcchhhhhcCcC--------CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh
Q 006688 352 AMTRENTKWQDGRDIWWQDVVPKY--------PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (635)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 423 (635)
...+.+.+... ..........++++++|+|||||||.||||+++|++++.+... ....
T Consensus 167 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~-~~~~ 232 (547)
T PRK13295 167 -------------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVP-YAER 232 (547)
T ss_pred -------------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHH-HHHH
Confidence 01111111100 0111122346789999999999999999999999997766544 4456
Q ss_pred cCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccc
Q 006688 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (635)
Q Consensus 424 ~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~ 503 (635)
++++++|++++.+|++|..++++.++.+|..|+++++.+. +++..+++.++++++|++.++|+++..|......
T Consensus 233 ~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~-- 306 (547)
T PRK13295 233 LGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDI----WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE-- 306 (547)
T ss_pred hCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--
Confidence 8899999999999999999888889999999999999764 4899999999999999999999999999876432
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCC
Q 006688 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK 583 (635)
Q Consensus 504 ~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~ 583 (635)
....+++||.+++||+++++++.+++.+.++ .+++|.||+||++.+++............++|+|+++++++|+|++
T Consensus 307 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~ 383 (547)
T PRK13295 307 SGRPVSSLRTFLCAGAPIPGALVERARAALG---AKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDAD 383 (547)
T ss_pred cCCCcccceEEEEecCCCCHHHHHHHHHHhC---CCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCC
Confidence 3456789999999999999999999999886 7899999999998755433221112335689999999999999999
Q ss_pred CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 584 GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 584 g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++.|+.|||+|+| ++++.||+++|+.+... .+|||+|||+|++
T Consensus 384 ~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~~TGD~~~~ 429 (547)
T PRK13295 384 GAPLPAGQIGRLQVRG--CSNFGGYLKRPQLNGTD----ADGWFDTGDLARI 429 (547)
T ss_pred CCCCCCCCCCeEEEEc--CcccccccCCccccccC----CCCCeecceEEEE
Confidence 9999999999999999 89999999999988765 3789999999985
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=456.57 Aligned_cols=415 Identities=22% Similarity=0.264 Sum_probs=329.4
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcC--CCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCch
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEAN--DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME 269 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~--~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e 269 (635)
.|+++. .++++.|.+- ++.+|+.+++-+... ..+..+.+||.|..+++.+++..|+++|+++++.|+|+..|++|
T Consensus 69 ~~~~~~--~T~~~~f~~~-~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pE 145 (691)
T KOG1256|consen 69 CPFDGP--LTLYEGFRRS-VEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPE 145 (691)
T ss_pred CCCCCc--ccHHHHhhcc-hhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChh
Confidence 455543 3589999998 899999999986542 22778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhh-cCCCccEEEEec
Q 006688 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK-SGISVDVCLTYE 348 (635)
Q Consensus 270 ~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~ 348 (635)
|+++.+||...|++.|||...++++.+.+|++.+.+.+||++++.. ....++.... ..+.++.+|.++
T Consensus 146 Wiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k-----------~~~ll~~~~~~~~~~LK~iI~~~ 214 (691)
T KOG1256|consen 146 WIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKK-----------AEKLLEIKENDSLPSLKAIIQLD 214 (691)
T ss_pred hHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHH-----------HHHHHhhcccccCccceeEEEec
Confidence 9999999999999999999999999999999999999999996531 2222222222 357789999888
Q ss_pred CCccccccccccCCCCcchhhhhcCcCCC-CCCc-ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHH---HHHHh
Q 006688 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPT-KCEV-EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT---TFKYA 423 (635)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~---~~~~~ 423 (635)
...+.-.....-.......|+++.+-... .... .+..|+|.|.|+|||||||.||||++||+|++..... .....
T Consensus 215 ~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~ 294 (691)
T KOG1256|consen 215 EPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAE 294 (691)
T ss_pred CCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcc
Confidence 76422111111112235667777654422 1222 4678999999999999999999999999997764322 11111
Q ss_pred c--CCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc
Q 006688 424 F--DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (635)
Q Consensus 424 ~--~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~ 501 (635)
. .....|++++++|++|++..+.+.+ .+..|+++.+..+ |+..+.+-|++.++|++..+|.+|+.+.+...+
T Consensus 295 ~~~~~~~~dv~lSyLPLAHi~er~~~~~-~~~~G~~IgF~~g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~ 368 (691)
T KOG1256|consen 295 NAKATVGDDVYLSYLPLAHIFERVVELY-TFYIGAKIGFARG-----DILKLTDDLKELKPTVFPGVPRVLERIYEGIQK 368 (691)
T ss_pred cccccccCceEEEeCcHHHHHHHHHHHh-HhhcccEEEEecC-----ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHH
Confidence 1 1223699999999999999877766 4689999999986 888899999999999999999999887553210
Q ss_pred ccc------------------------cCC-----C--------------CCceEEEecCCCCCHHHHHHHHHHhCCCCc
Q 006688 502 YVT------------------------RYS-----R--------------KSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (635)
Q Consensus 502 ~~~------------------------~~~-----l--------------~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~ 538 (635)
..+ ... + .++|.+++|++|+++++...++..++ +
T Consensus 369 ~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g---~ 445 (691)
T KOG1256|consen 369 QVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG---C 445 (691)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC---c
Confidence 000 000 0 57899999999999999999999987 8
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHH
Q 006688 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (635)
Q Consensus 539 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~ 617 (635)
+|+++||+|||++.++...+++ ...+++|.|+|+++++++| ++.+--+.|..|||||+| ++++.|||+||++|.+
T Consensus 446 ~v~eGYGlTEts~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG--~~Vf~GYyK~p~~T~e 521 (691)
T KOG1256|consen 446 RVLEGYGLTETSAGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRG--PNVFMGYYKDPEKTAE 521 (691)
T ss_pred eeeecccccccCCceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEec--chhceeccCChHHHhh
Confidence 9999999999996665555544 3789999999999999999 555555666689999999 9999999999999999
Q ss_pred hhcCCCCceEEcCCeEec
Q 006688 618 TYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 618 ~~~~~~~g~yrTGDlgr~ 635 (635)
.+.+ |||+||||+|+|
T Consensus 522 ~ide--DGWLhTGDiG~~ 537 (691)
T KOG1256|consen 522 AIDE--DGWLHTGDIGEW 537 (691)
T ss_pred hhcc--ccccccccceeE
Confidence 9865 999999999987
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=466.48 Aligned_cols=393 Identities=28% Similarity=0.410 Sum_probs=302.9
Q ss_pred HhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEE
Q 006688 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (635)
Q Consensus 206 l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~v 285 (635)
|+++ |+++||++|+++ +..+.+||+||+++++++|..|+++|+++|++|+|+++|++++++++|||+++|++++
T Consensus 1 f~~~-a~~~pd~~a~~~-----~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 1 FERQ-AQRYPDRIALID-----DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHHH-HHHSTTSEEEEE-----TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEE
T ss_pred ChhH-HhhCCCceEEEE-----CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccc
Confidence 5677 899999999997 1348999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCc
Q 006688 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (635)
Q Consensus 286 pld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (635)
|++|.++.+++.++++.+++++||+ .+... -.. +...... .........++.++...... ...
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~d------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~ 137 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIIT-SEAVD------SEP-LKKLKSI-FKQEDPSSSIIILDRDDLPK--------KEA 137 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEE-CHHHS------CHH-HHHHHHH-HTTSTTTEEEEEESHSSCTT--------CHH
T ss_pred ccccccccccccccccccceeEEEE-ecccc------ccc-cccchhh-hccccccccccccccccccc--------ccc
Confidence 9999999999999999999999998 20000 001 1111111 11112334455555322000 000
Q ss_pred chhhhhcCcCCCCCCccc-CCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHH-HHhcCCCCCcEEEEeCCcceecc
Q 006688 366 IWWQDVVPKYPTKCEVEW-VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
......... . ... ..++++++|+|||||||.||+|.++|++++....... ...++++ |++++.+|++|..+
T Consensus 138 ~~~~~~~~~----~-~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g 210 (417)
T PF00501_consen 138 LKSASLSDE----P-QSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFG 210 (417)
T ss_dssp HHHHHHCHC----S-HSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHH
T ss_pred ccccccccc----c-ccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccc
Confidence 000000000 0 000 0579999999999999999999999999776654422 2233444 69999999999999
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc--cccCCCCCceEEEecCCCC
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY--VTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~~~l~sLr~v~~gGe~l 521 (635)
++..++.+|..|+++++++.... .+++.+++.|+++++|++.++|+++..|++..... ....++++||.++++|+++
T Consensus 211 ~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l 289 (417)
T PF00501_consen 211 LISALLAALFSGATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPL 289 (417)
T ss_dssp HHHHHHHHHHCTSEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-
T ss_pred ccccccccccccccccccccccc-cccccchhcccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 76889999999999999986422 13577899999999999999999999998842211 1134788999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCC-CCccCCCcceEEEEecC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSS 600 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~-g~~vp~g~~GEL~i~g~ 600 (635)
++++.+++++.++. .++++.||+||++..++.........+++++|+|+||++++|+|++ +++++.|+.|||+|+|
T Consensus 290 ~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~- 366 (417)
T PF00501_consen 290 PPDLLRRLRKAFGN--APIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRG- 366 (417)
T ss_dssp CHHHHHHHHHHHTT--SEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEES-
T ss_pred Chhhcccccccccc--ccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccC-
Confidence 99999999999983 5899999999999887644222222466789999999999999987 9999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|.++.||+++|+.+.+.|.. +|||||||+||+
T Consensus 367 -~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~g~~ 398 (417)
T PF00501_consen 367 -PNVFSGYYNDPELTAEAFID--DGWYRTGDLGRL 398 (417)
T ss_dssp -TTSBSEETTBHHHHHHHEET--TSEEEEEEEEEE
T ss_pred -Cccceeeecccccccccccc--ccceecceEEEE
Confidence 89999999999999999864 579999999985
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=473.65 Aligned_cols=396 Identities=17% Similarity=0.152 Sum_probs=304.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.+.|.+. ++++|+++|+.+.. .+++||+||.++++++|+.|.+ .+||+|+|+++|++++++++|||+++
T Consensus 20 ~~~~~~~~~-~~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~ 90 (539)
T PRK06334 20 TVLESFLKL-CSEMTTATVCWDEQ-----LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLS 90 (539)
T ss_pred cHHHHHHHH-HHhCCCceEEEeCC-----CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhc
Confidence 477888887 89999999998532 2579999999999999999987 38999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++||++.++.+++.++++++++++||++.... ..+.+.... .......++.++.... ...+
T Consensus 91 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~---~~~~~~~~i~~~~~~~----~~~~ 154 (539)
T PRK06334 91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLM---------QHLAQTHGE---DAEYPFSLIYMEEVRK----ELSF 154 (539)
T ss_pred CCeeEecCcccchHHHHHHHHHcCCCEEEehHHHH---------HHHhhhhhc---cccccccEEEEehhhh----hccH
Confidence 99999999999999999999999999999875431 111111000 0000112333322100 0000
Q ss_pred CCCCcchhhhhcCcCC----CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 361 QDGRDIWWQDVVPKYP----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
.. ............ .........++++++|+|||||||.||||+++|++++.+... ....++++++|++++++
T Consensus 155 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~ 231 (539)
T PRK06334 155 WE--KCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRA-CLKFFSPKEDDVMMSFL 231 (539)
T ss_pred HH--hhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHH-HHHhcCCCCCceEEEec
Confidence 00 000000000000 001112356899999999999999999999999997765543 34468889999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|.+++...++.+|..|+++++.... +++..+++.|+++++|++.++|++++.|++.... ...++++||.+++
T Consensus 232 p~~h~~g~~~~~~~~l~~G~~vv~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~ 306 (539)
T PRK06334 232 PPFHAYGFNSCTLFPLLSGVPVVFAYNP---LYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK--QESCLPSLRFVVI 306 (539)
T ss_pred chHhhhhhHHHHHHHHHcCCeEEEecCC---CCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhh--cccccccccEEEE
Confidence 9999998776778899999999987532 4899999999999999999999999999876431 3456789999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEE
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYL 595 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL 595 (635)
||+++++++.+++.+.++ +..+++.||+||++.+++..... ......++|+|++|++++|+|+ +++++|.|+.|||
T Consensus 307 gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel 383 (539)
T PRK06334 307 GGDAFKDSLYQEALKTFP--HIQLRQGYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLV 383 (539)
T ss_pred CCccCCHHHHHHHHHHCC--CCeEEecccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEE
Confidence 999999999999999986 47899999999998765543322 2234568999999999999995 6899999999999
Q ss_pred EEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 596 ~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+| +++++|||++|+.+.... .+.+|||+|||+|++
T Consensus 384 ~v~g--~~~~~GY~~~~~~~~~~~-~~~~~w~~TGD~g~~ 420 (539)
T PRK06334 384 LTRG--TSLFSGYLGEDFGQGFVE-LGGETWYVTGDLGYV 420 (539)
T ss_pred EEec--CcccccccCCccccccee-eCCceeEECCCEEEE
Confidence 9999 999999999998643221 124679999999985
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=472.46 Aligned_cols=388 Identities=20% Similarity=0.221 Sum_probs=310.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++++|+++|+++.+ +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 50 ~~~~~~~~~-a~~~pd~~Al~~~~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 50 PFAGLVAHA-ARRAPDRAALIDER------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred hHHHHHHHH-HHHCCCceEEEECC------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 378899988 89999999999643 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++.+++++++++++|+++.... .+.. .......+..++...... ..
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~-------~~ 182 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTD---------LLSA----LPPDLGRLRAWGGNPDDD-------EP 182 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHH---------HHHh----hccccccceEEEEecCcc-------cc
Confidence 999999999999999999999999999999865421 1111 111112222222211110 00
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.......++++....... .....++++++|+|||||||.||||+++|++++.+... ....+++.++|+++...|++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~ 259 (549)
T PRK07788 183 SGSTDETLDDLIAGSSTA--PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG-LLSRVPFRAGETTLLPAPMFH 259 (549)
T ss_pred CCcCcccHHHHhcCCCCC--CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHH-HHhhCCCCcCCeEEEccchHH
Confidence 001122344444322211 12234678899999999999999999999997665443 344678899999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++ ..++.++..|+++++... +++..+++.+++++||++.++|+++..|++.........++++||.+++|||+
T Consensus 260 ~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~ 334 (549)
T PRK07788 260 ATGW-AHLTLAMALGSTVVLRRR----FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSA 334 (549)
T ss_pred HHHH-HHHHHHHHhCCEEEECCC----CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCC
Confidence 9886 457788999999999743 59999999999999999999999999998875432234567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++++++.+.++ .+++|.||+||++..++... .+....++++|+|++|++++|+|+++++++.|++|||+|+|
T Consensus 335 l~~~~~~~~~~~~~---~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 409 (549)
T PRK07788 335 LSPELATRALEAFG---PVLYNLYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGN- 409 (549)
T ss_pred CCHHHHHHHHHHhC---ccceeccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeC-
Confidence 99999999999987 67999999999886544332 22234567899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++. + . .+|||+|||+|++
T Consensus 410 -~~~~~gY~~~~~~--~-~---~~g~~~TGDl~~~ 437 (549)
T PRK07788 410 -GFPFEGYTDGRDK--Q-I---IDGLLSSGDVGYF 437 (549)
T ss_pred -CCccccccCCCcc--c-c---cCCceecCceEEE
Confidence 8899999999875 1 1 3789999999985
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=473.03 Aligned_cols=395 Identities=18% Similarity=0.143 Sum_probs=305.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++++|+++|+++.+ +++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~~~~~~~~~-~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 8 HICQCLTRL-ATLRGNAVVTISGN------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred HHHHHHHHH-HHhcCCceEEecCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 477889998 89999999998643 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++||++.++.+++.+++++++++++++++.... ...... ....+.+..++..+...... ....
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~~~ 146 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSS---------WYEELQ---NDRLPSLMWQVFLESPSSSV--FIFL 146 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccch---------HHHHHh---hccCCceeEEEEecCccccc--ccch
Confidence 999999999999999999999999999999875421 011110 01112333344333211000 0000
Q ss_pred CCCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
......++..... ..........++++++|+|||||||.||||+++|++++.+.... ...+++.++|+++..+|++
T Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~ 223 (563)
T PLN02860 147 --NSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAK-IAIVGYGEDDVYLHTAPLC 223 (563)
T ss_pred --hhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHH-HhhcCCCCCCEEEEecCch
Confidence 0000111111110 00111123467899999999999999999999999976654433 3467899999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ ..++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++..........+++||.+++||+
T Consensus 224 h~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~ 298 (563)
T PLN02860 224 HIGGL-SSALAMLMVGACHVLLPK----FDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGG 298 (563)
T ss_pred hhccH-HHHHHHHHcCceEEecCC----CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCC
Confidence 99986 467889999999999864 5999999999999999999999999999876432222346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC---------------------CCCCCCCCCCCCCCCeEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---------------------WPQKPGSATFPFFGVQPV 578 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---------------------~~~~~~siG~pl~g~~v~ 578 (635)
++++++++.|.+.++ +.+++|.||+||++..++...... ......++|+|++|++++
T Consensus 299 ~l~~~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 376 (563)
T PLN02860 299 SLSSRLLPDAKKLFP--NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELK 376 (563)
T ss_pred cCCHHHHHHHHHhcC--CCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEE
Confidence 999999999999986 478999999999876543321100 011123789999999999
Q ss_pred EEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 579 IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|++ +|+.|||+|+| ++++.|||++|+.+.+.+.. +|||+|||+|++
T Consensus 377 i~~~~-----~g~~Gel~v~g--~~~~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~ 424 (563)
T PLN02860 377 IGLDE-----SSRVGRILTRG--PHVMLGYWGQNSETASVLSN--DGWLDTGDIGWI 424 (563)
T ss_pred EecCC-----CCceeEEEEec--CcccccccCCccccchhccC--CCeEEccceEEE
Confidence 99976 67899999999 89999999999999887643 799999999985
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=486.50 Aligned_cols=368 Identities=19% Similarity=0.266 Sum_probs=300.4
Q ss_pred HHHHHhhhhhcc--CCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 202 CYNCLDRNIEAG--LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 202 ~~~~l~~~~a~~--~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
+.++|.++ ++. +||++|++.. +.+||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||++
T Consensus 6 ~~~~~~~~-a~~~~~pd~~a~~~~-------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 77 (705)
T PRK06060 6 LAGLLAEQ-ASEAGWYDRPAFYAA-------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLA 77 (705)
T ss_pred HHHHHHHH-HhhccCCCceEEEec-------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57888887 664 7999999852 3699999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++|++|.++.+++.+++++++++++|+++......... .++....
T Consensus 78 aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------------------~~~~~~~---------- 126 (705)
T PRK06060 78 RGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------------------RVAEAAE---------- 126 (705)
T ss_pred hCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------------------ccchhhh----------
Confidence 999999999999999999999999999999976532110000 0000000
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
.+.+... ..........++++|||+|||||||.||||+++|++++.+........+++.++|++++.++++
T Consensus 127 -------~~~~~~~--~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 197 (705)
T PRK06060 127 -------LMSEAAR--VAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMY 197 (705)
T ss_pred -------hhhhccc--cCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccch
Confidence 0000000 0001112345789999999999999999999999997765544434467889999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++...++.+|..|+++++.+.. +++..+...++++++|+++++|+++..|++... ...+++||.+++|||
T Consensus 198 ~~~~~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----~~~~~slr~i~~gGe 270 (705)
T PRK06060 198 FAYGLGNSVWFPLATGGSAVINSAP---VTPEAAAILSARFGPSVLYGVPNFFARVIDSCS----PDSFRSLRCVVSAGE 270 (705)
T ss_pred hhcchhHHHHHHHhcCCEEEEeCCC---CCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc----cccccceeEEEEecC
Confidence 9988767788999999999998642 478889999999999999999999999987532 345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++++++|.+.++ +.+++|.||+||++..+...... ..+.+++|+|+++++++|+|++++++|.|+.|||||+|
T Consensus 271 ~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g 346 (705)
T PRK06060 271 ALELGLAERLMEFFG--GIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRG 346 (705)
T ss_pred cCCHHHHHHHHHHcC--CCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEcc
Confidence 999999999999987 47899999999998654332211 23567899999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.+.. .+|||+|||+|++
T Consensus 347 --~~v~~GY~~~~~~~~~-----~~~~~~TGDl~~~ 375 (705)
T PRK06060 347 --PAIAKGYWNRPDSPVA-----NEGWLDTRDRVCI 375 (705)
T ss_pred --chhhhhhhCCCccccc-----CCCcEECCeeEEE
Confidence 9999999999986532 3789999999985
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=476.63 Aligned_cols=410 Identities=21% Similarity=0.268 Sum_probs=318.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCC--CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
+++++|+++ ++++|+++|+++.... .+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 26 t~~~~l~~~-a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 26 STYELLSRA-AARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CHHHHHHHH-HHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 378999998 8999999999974211 1345789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 279 ~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
++| +++||++.++.+++.+++++++++++|++...... .....+.... ...+.++.++.++....... ..
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~----~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~-~~ 174 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGT----DIWQKVAEVL----AALPELRTVVEVDLARYLPG-PK 174 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCc----hHHHHHHHHH----hcCCcceeEEEecCcccccc-cc
Confidence 999 56999999999999999999999999998764211 1111222111 22245666666543210000 00
Q ss_pred cc--------CCCCcchhhhhcCcCCCC--CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCC
Q 006688 359 KW--------QDGRDIWWQDVVPKYPTK--CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428 (635)
Q Consensus 359 ~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 428 (635)
.+ .......+.+.+...... .......++++++|+|||||||.||||+++|++++.+. ......+++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~-~~~~~~~~~~~ 253 (632)
T PRK07529 175 RLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANA-WLGALLLGLGP 253 (632)
T ss_pred cccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHH-HHHHHhcCCCC
Confidence 00 011122344433332211 11223467999999999999999999999999976654 44445678899
Q ss_pred CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCC---hhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccccc
Q 006688 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD---SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (635)
Q Consensus 429 ~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d---~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~ 505 (635)
+|++++.+|++|..++...++.+|..|+++++.+..... + ...+++.|+++++|++.++|+++..|++... ..
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~-~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~ 329 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYR-GPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV---DG 329 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccC-cchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---cC
Confidence 999999999999988777889999999999998643221 2 3678999999999999999999999988653 34
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEE--cCC
Q 006688 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV--DEK 583 (635)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~Iv--D~~ 583 (635)
.++++||.+++||+++++++.++|.+.++ ++++|.||+||++.++..... ....+++++|+|+|+++++|+ |++
T Consensus 330 ~~~~slr~v~~gg~~l~~~l~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~-~~~~~~~svG~~~p~~~v~i~~~d~~ 405 (632)
T PRK07529 330 HDISSLRYALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVSSVNPP-DGERRIGSVGLRLPYQRVRVVILDDA 405 (632)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHhC---CcEeeeecccccCcccccCCc-cccccCCCcccccCCceEEEEEcCCC
Confidence 46889999999999999999999999887 789999999999876654432 223467899999999999885 677
Q ss_pred C---CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 584 G---VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 584 g---~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+ ++++.|+.|||+|+| |+++.||+++++ +...|+ .+|||+|||+|++
T Consensus 406 g~~~~~~~~g~~Gel~v~g--p~v~~GY~~~~~-~~~~~~--~~gw~~TGDlg~~ 455 (632)
T PRK07529 406 GRYLRDCAVDEVGVLCIAG--PNVFSGYLEAAH-NKGLWL--EDGWLNTGDLGRI 455 (632)
T ss_pred CcccccCCCCCceEEEEEC--CCccccccCCcc-cccccc--CCCceEcCcEEEE
Confidence 7 899999999999999 999999998754 445554 3789999999985
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=481.97 Aligned_cols=414 Identities=18% Similarity=0.201 Sum_probs=304.3
Q ss_pred hHHHHHHhhhhhccCCCceEEEEE-----------cCC------CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWE-----------AND------PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~-----------~~~------~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai 262 (635)
+++.++|++. ++++||++|+.+. ++. .+..+.+||+||+++++++|+.|+++|+++||+|+|
T Consensus 58 ~t~~~l~~~~-~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 58 TTLAALFEQS-CKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCHHHHHHHH-HHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 3578999998 8999999999532 100 123456999999999999999999999999999999
Q ss_pred EcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCcc
Q 006688 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342 (635)
Q Consensus 263 ~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (635)
+++|++||++++|||+++|+++|||++.++.+++.++|++++++++|++.... ..+. ......+.++
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~---------~~l~----~~~~~~~~l~ 203 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL---------KKLI----DISSQLETVK 203 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH---------HHHH----HHhhccCCce
Confidence 99999999999999999999999999999999999999999999999975431 1111 1122335677
Q ss_pred EEEEecCCcccccccc-ccCCCCcchhhhhcCcCCC-CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHH
Q 006688 343 VCLTYENQSAMTRENT-KWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (635)
Q Consensus 343 ~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~ 420 (635)
+++.+++......... .........+.++...... ..+.....++|+++|+|||||||.||||++||++++.+.....
T Consensus 204 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~ 283 (696)
T PLN02387 204 RVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVM 283 (696)
T ss_pred EEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHH
Confidence 8887765321100000 0000011233433322111 1122234689999999999999999999999999876654443
Q ss_pred HHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCC--CC--hhHHHHHHHHcCCcEEEecHHHHHHHH
Q 006688 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY--PD--SGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (635)
Q Consensus 421 ~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~--~d--~~~l~~~i~~~~vt~l~~~Ps~l~~l~ 496 (635)
....++.++|++++++|++|++++... +..+..|+++.+....... ++ +..+++.++++++|++..+|.+++.|.
T Consensus 284 ~~~~~~~~~d~~l~~lPl~Hi~~~~~~-~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~ 362 (696)
T PLN02387 284 TVVPKLGKNDVYLAYLPLAHILELAAE-SVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVR 362 (696)
T ss_pred hhcCCCCCCCEEEEECcHHHHHHHHHH-HHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHH
Confidence 333468889999999999999886544 3456778877664321110 00 234567899999999999999999987
Q ss_pred hcCccccc----------------------c----------------------CCC-CCceEEEecCCCCCHHHHHHHHH
Q 006688 497 RDGNEYVT----------------------R----------------------YSR-KSLRVLGSVGEPINPSAWRWFFN 531 (635)
Q Consensus 497 ~~~~~~~~----------------------~----------------------~~l-~sLr~v~~gGe~l~~~l~~~~~~ 531 (635)
+....... . ..+ +++|.+++||+++++++.+.+..
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~ 442 (696)
T PLN02387 363 DGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINI 442 (696)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHH
Confidence 53210000 0 001 58999999999999999888877
Q ss_pred HhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCc-c--CCCcceEEEEecCCCcchhh
Q 006688 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVE-I--EGECSGYLCIKSSWPGAFRT 607 (635)
Q Consensus 532 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~-v--p~g~~GEL~i~g~~~~v~~G 607 (635)
.++ +++++.||+||+++.++..... ....+++|+|+|+++++|+| +++.. + .++..|||+|+| |+++.|
T Consensus 443 ~~g---~~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG--p~v~~G 515 (696)
T PLN02387 443 CLG---APIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG--PSVTLG 515 (696)
T ss_pred HcC---CCeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc--Ccccch
Confidence 777 7899999999998765544332 24568999999999999999 54432 2 234479999999 999999
Q ss_pred hcCChhHHHHhhcCCCCc--eEEcCCeEec
Q 006688 608 LYGDHERYETTYFKPFPG--YYFTGDGCSR 635 (635)
Q Consensus 608 Y~~~~e~t~~~~~~~~~g--~yrTGDlgr~ 635 (635)
||++|+.|.+.|..+.+| ||+|||+|++
T Consensus 516 Y~~~pe~T~~~f~~d~~G~~W~~TGDig~~ 545 (696)
T PLN02387 516 YFKNQEKTDEVYKVDERGMRWFYTGDIGQF 545 (696)
T ss_pred hcCCHHHHhhhhccccCCCceeecCceEEE
Confidence 999999999998543455 9999999985
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-52 Score=469.82 Aligned_cols=395 Identities=19% Similarity=0.185 Sum_probs=300.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++++|+++|+++.+.. +..+.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~-a~~~p~~~a~~~~~~~-~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 40 RLTDRLVHW-AQEAPDRVFLAERGAD-GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred cHHHHHHHH-HHHCCCCceeeeccCC-CceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 477889988 8999999999875321 33578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCC-----HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc
Q 006688 281 GAVHSVVFAGFS-----SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (635)
Q Consensus 281 Ga~~vpld~~~~-----~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (635)
|++++|++|.++ .+++.+++++++++++|+++... ......... .....++..+...
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~-----------~~~~~~~~~---~~~~~~i~~~~~~---- 179 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-----------FARALAAVV---PADVEVVAVRGAV---- 179 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH-----------HHHHHhhhc---cCCceEEEecCCC----
Confidence 999999999998 79999999999999999875310 011111110 1111223222110
Q ss_pred cccccCCCCcchhhhhcCcCCC---CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCC--CCc
Q 006688 356 ENTKWQDGRDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK--PSD 430 (635)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~~d 430 (635)
.......+.++...... ........++|+++|+|||||||.||||++||++++.+... ....+++. .++
T Consensus 180 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~ 253 (614)
T PRK08180 180 -----PGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQM-LAQTFPFLAEEPP 253 (614)
T ss_pred -----CCcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHH-HHhhccccCCCCc
Confidence 00001233333332111 11112346799999999999999999999999997765533 33345553 568
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc--ccccCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE--YVTRYSR 508 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~~~l 508 (635)
++++++|++|..++...++.+|+.|+++++.+......+...+++.|+++++|+++++|+++..|++.... ......+
T Consensus 254 ~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~ 333 (614)
T PRK08180 254 VLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFF 333 (614)
T ss_pred EEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhc
Confidence 99999999999987778888999999999976421111345778899999999999999999999874321 1123357
Q ss_pred CCceEEEecCCCCCHHHHHHHHHH----hCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCC
Q 006688 509 KSLRVLGSVGEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (635)
Q Consensus 509 ~sLr~v~~gGe~l~~~l~~~~~~~----~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g 584 (635)
++||.+++||+++++++.++|.+. ++. ++++++.||+||++.+++..... ..+++++|+|++|++++|+|++
T Consensus 334 ~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~~- 409 (614)
T PRK08180 334 SRLKLLFYAGAALSQDVWDRLDRVAEATCGE-RIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPVG- 409 (614)
T ss_pred cceeEEEEccCCCCHHHHHHHHHHHHhhcCC-CceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEecCC-
Confidence 899999999999999999998875 332 36799999999998655443222 2467899999999999999863
Q ss_pred CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
..|||+|+| ++++.|||++|+.|.+.|. .+|||+|||+|++
T Consensus 410 ------~~GEi~vrg--~~v~~GY~~~p~~t~~~~~--~dgw~~TGDlg~~ 450 (614)
T PRK08180 410 ------GKLEVRVKG--PNVTPGYWRAPELTAEAFD--EEGYYRSGDAVRF 450 (614)
T ss_pred ------CCcEEEEec--CccchhhcCChhHhHhhcc--cCCceeccceEEe
Confidence 369999999 9999999999999988764 3799999999984
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=477.29 Aligned_cols=400 Identities=20% Similarity=0.248 Sum_probs=296.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcC-----------CC----------CccEEEeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEAN-----------DP----------GVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~-----------~~----------~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~ 259 (635)
++.++|+++ ++++|+++|+.+... ++ +..+.+||+||.++++++|+.|+++|+++||+
T Consensus 70 t~~~~~~~~-~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~ 148 (700)
T PTZ00216 70 NFLQRLERI-CKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN 148 (700)
T ss_pred CHHHHHHHH-HHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 478999999 899999999998421 11 14689999999999999999999999999999
Q ss_pred EEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCC
Q 006688 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (635)
Q Consensus 260 Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (635)
|+|+++|+++|++++|||+++|++++|+++.++.+++++++++++++++|++.... ............
T Consensus 149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------------~~l~~~~~~~~~ 216 (700)
T PTZ00216 149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------------PNLLRLMKSGGM 216 (700)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------------HHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999975421 111111111111
Q ss_pred CccEEEEecCCccccccccccCCCCcchhhhhcCcC----CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHH
Q 006688 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415 (635)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~ 415 (635)
....++.++..... ..........|.+++... ..........++|+|+|+|||||||.||||+++|++++.+
T Consensus 217 ~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~ 292 (700)
T PTZ00216 217 PNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292 (700)
T ss_pred CceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence 12245555432100 000011123344443321 1111123346899999999999999999999999997765
Q ss_pred HHHHHHH---hc-CCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHH-------HHHHcCCcE
Q 006688 416 TATTFKY---AF-DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD-------IVDKYKVTI 484 (635)
Q Consensus 416 ~~~~~~~---~~-~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~-------~i~~~~vt~ 484 (635)
....... .+ .++++|++++++|++|.+++.. ....+..|+++++. ++..+.+ .|+++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~l~~~~pT~ 364 (700)
T PTZ00216 293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG-------SPRTLTDTFARPHGDLTEFRPVF 364 (700)
T ss_pred HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC-------CHHHhhhhhccccchHHHcCCcE
Confidence 4332221 11 2467899999999999887543 34457778877662 3444444 688999999
Q ss_pred EEecHHHHHHHHhcCccccc-----------------------cC----------------CCCCceEEEecCCCCCHHH
Q 006688 485 FYTAPTLVRSLMRDGNEYVT-----------------------RY----------------SRKSLRVLGSVGEPINPSA 525 (635)
Q Consensus 485 l~~~Ps~l~~l~~~~~~~~~-----------------------~~----------------~l~sLr~v~~gGe~l~~~l 525 (635)
+..+|.+++.|.+....... .. ..+++|.+++||+++++++
T Consensus 365 ~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~ 444 (700)
T PTZ00216 365 LIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAAT 444 (700)
T ss_pred EEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHH
Confidence 99999999988653110000 00 0157999999999999999
Q ss_pred HHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCC--CccCCCcceEEEEecCCCc
Q 006688 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSWPG 603 (635)
Q Consensus 526 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g--~~vp~g~~GEL~i~g~~~~ 603 (635)
.+++...++ +++|.||+||+++.++..... ....+++|+|++|++++|+|+++ ...+++..|||+|+| |+
T Consensus 445 ~~~~~~~~~----~l~~~YG~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG--~~ 516 (700)
T PTZ00216 445 QEFVNVVFG----MVIQGWGLTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRG--PF 516 (700)
T ss_pred HHHHHHHhh----hHhhccCcccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcC--Cc
Confidence 887766543 799999999998765544332 24578999999999999999764 334566789999999 99
Q ss_pred chhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 604 AFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 604 v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++|||++|+.|.+.|.. +|||||||+|++
T Consensus 517 v~~GY~~~pe~T~~~f~~--dGw~~TGDig~~ 546 (700)
T PTZ00216 517 LFKGYYKQEELTREVLDE--DGWFHTGDVGSI 546 (700)
T ss_pred ccchhcCChhHhhhhccc--cCCeeccceEEE
Confidence 999999999999999864 799999999985
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=462.51 Aligned_cols=394 Identities=20% Similarity=0.280 Sum_probs=306.0
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
+.+..++++ +.+|+++|+++... ..++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|||+
T Consensus 41 ~~~~~l~~~---~~~~~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~ 113 (560)
T PLN02574 41 DAVSFIFSH---HNHNGDTALIDSST----GFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL 113 (560)
T ss_pred CHHHHHhcC---cccCCCCEEEECCC----CCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 445566654 45899999996431 2479999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 279 ~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
++|++++|++|.++.+++.++++++++++++++..... .+ .. .... ++.++..... ..
T Consensus 114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~---------~~----~~-----~~~~-~~~~~~~~~~---~~ 171 (560)
T PLN02574 114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVE---------KL----SP-----LGVP-VIGVPENYDF---DS 171 (560)
T ss_pred HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHH---------HH----Hh-----cCCc-EEecCccccc---cc
Confidence 99999999999999999999999999999999765311 11 00 1111 2222211000 00
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCC-CCCcEEEE
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDY-KPSDVYWC 434 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~-~~~d~~l~ 434 (635)
.......+.+++.......+.....++++++|+|||||||.||||+++|++++.+...... ..+.. ...++++.
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (560)
T PLN02574 172 --KRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLA 249 (560)
T ss_pred --CccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEE
Confidence 0001112333322222222223456789999999999999999999999997665433221 11222 35688899
Q ss_pred eCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEE
Q 006688 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (635)
Q Consensus 435 ~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v 514 (635)
.+|++|..++...++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ....++++||.+
T Consensus 250 ~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~lr~~ 324 (560)
T PLN02574 250 ALPMFHIYGLSLFVVGLLSLGSTIVVMRR----FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG-VCGEVLKSLKQV 324 (560)
T ss_pred ecchHHHHHHHHHHHHHHhcCCEEEEecC----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-cccCccccceEE
Confidence 99999999876667788889999999864 5999999999999999999999999999886431 124567899999
Q ss_pred EecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcce
Q 006688 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (635)
Q Consensus 515 ~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~G 593 (635)
++||+++++++++++.+.++ +.++++.||+||++.+.+.........+++++|+|++|++++|+| +++++++.|+.|
T Consensus 325 ~~gg~~l~~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~G 402 (560)
T PLN02574 325 SCGAAPLSGKFIQDFVQTLP--HVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCG 402 (560)
T ss_pred EEecccCCHHHHHHHHHHCC--CCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCe
Confidence 99999999999999999886 488999999999986554322222234567899999999999999 789999999999
Q ss_pred EEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+| ++++.||+++++.+.+.|.. +|||+|||+|++
T Consensus 403 ei~v~g--~~~~~GY~~~~~~t~~~~~~--~g~~~TGDlg~~ 440 (560)
T PLN02574 403 ELWIQG--PGVMKGYLNNPKATQSTIDK--DGWLRTGDIAYF 440 (560)
T ss_pred EEEEEC--cchhhhhcCChhHhhhhccC--CCCcccceEEEE
Confidence 999999 89999999999999888753 899999999985
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-52 Score=470.15 Aligned_cols=410 Identities=19% Similarity=0.226 Sum_probs=305.5
Q ss_pred cchHHHHHHhhhhhccCCCceEEEEEc---CCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHH
Q 006688 198 ITNICYNCLDRNIEAGLGDKVAIYWEA---NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274 (635)
Q Consensus 198 ~~~~~~~~l~~~~a~~~pd~~Al~~~~---~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~ 274 (635)
..+++.++|++. ++++|+++|+.+.. +..+..+.+||+||.++++++|+.|++.|+++||+|+|+++|++||++++
T Consensus 40 ~~~t~~~~~~~~-~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~ 118 (660)
T PLN02430 40 DITTAWDIFSKS-VEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM 118 (660)
T ss_pred CCCCHHHHHHHH-HHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 345688999998 89999999997542 11123456899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc
Q 006688 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (635)
Q Consensus 275 LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (635)
|||+++|+++||+++.++.+++.+++++++++++|+++... ... ........+.++.++.++......
T Consensus 119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~--------~~~----~~~~~~~~~~l~~ii~~~~~~~~~ 186 (660)
T PLN02430 119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKI--------KEL----LEPDCKSAKRLKAIVSFTSVTEEE 186 (660)
T ss_pred HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHH--------HHH----HhhhcccCCCceEEEEECCCChHH
Confidence 99999999999999999999999999999999999875421 111 111111123566777765422100
Q ss_pred ccccccCCCCcchhhhhcCcCCC-CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHH--h--cCCCCC
Q 006688 355 RENTKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY--A--FDYKPS 429 (635)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~--~~~~~~ 429 (635)
.............|++++..... ........|+|+++|+|||||||.||||++||++++.+....... . .+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
T PLN02430 187 SDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHD 266 (660)
T ss_pred hhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCC
Confidence 00000000012234444322111 111223468999999999999999999999999977654332211 1 256789
Q ss_pred cEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccc------
Q 006688 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV------ 503 (635)
Q Consensus 430 d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~------ 503 (635)
|++++++|++|.++.... +.++..|+++++... ++..+++.|+++++|++..+|.+++.+.+......
T Consensus 267 d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~~-----~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~ 340 (660)
T PLN02430 267 DVYLSFLPLAHILDRMIE-EYFFRKGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR 340 (660)
T ss_pred CEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEeCC-----ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence 999999999999886554 457889999998753 67889999999999999999999988765210000
Q ss_pred -----------------------ccC-------------CC-CCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccc
Q 006688 504 -----------------------TRY-------------SR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546 (635)
Q Consensus 504 -----------------------~~~-------------~l-~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~ 546 (635)
... .+ .+||.+++||+++++++.+.+ +.++ ...+++.||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~--~~~i~~~YG~ 417 (660)
T PLN02430 341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTS--CAFVVQGYGL 417 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhc--CCCeeeecch
Confidence 000 01 589999999999999986655 5555 3679999999
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc--CCC-CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCC
Q 006688 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD--EKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (635)
Q Consensus 547 TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD--~~g-~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~ 623 (635)
||+++.++...+.+ ...++++|+|+++++++|+| +.+ .+++.+..|||+|+| |+++.|||++|+.|.+.| .
T Consensus 418 TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg--~~v~~GY~~~~e~t~~~~---~ 491 (660)
T PLN02430 418 TETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRG--KCLFSGYYKNPELTEEVM---K 491 (660)
T ss_pred hhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecC--CCccccccCChHHhhhhh---h
Confidence 99987665543322 24578999999999999987 333 456667789999999 999999999999998887 3
Q ss_pred CceEEcCCeEec
Q 006688 624 PGYYFTGDGCSR 635 (635)
Q Consensus 624 ~g~yrTGDlgr~ 635 (635)
+|||+|||+|++
T Consensus 492 dGw~~TGDig~~ 503 (660)
T PLN02430 492 DGWFHTGDIGEI 503 (660)
T ss_pred ccceeccceEEE
Confidence 899999999985
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=456.77 Aligned_cols=397 Identities=22% Similarity=0.298 Sum_probs=314.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++.+|+++|+++.+...+..+.+||+||+++++++|..|++.|+++|++|+++++|++++++++|||+++
T Consensus 23 ~~~~~~~~~-~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 23 TINDHFDAA-VANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred cHHHHHHHH-HHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 367889888 8999999999864322123578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++++++.... ......... .....+....++..+...
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------- 164 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRG----FDHAAMARE----LQSKLPALRQVVVIDGDG--------- 164 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEcccccc----ccHHHHHHH----HhccCCcceEEEEecCCC---------
Confidence 999999999999999999999999999999875421 001111111 111223444555554321
Q ss_pred CCCCcchhhhhcCcC-----CC---CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEE
Q 006688 361 QDGRDIWWQDVVPKY-----PT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 432 (635)
...+.+.+... .. ........++++++|+|||||||.||||+++|++++.+.. .....++++.+|++
T Consensus 165 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~ 239 (538)
T TIGR03208 165 ----DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIH-PYAERLELGGGDVI 239 (538)
T ss_pred ----CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHH-HHHhhcCCCCCCeE
Confidence 00111111100 00 0111234679999999999999999999999999766554 33446788899999
Q ss_pred EEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCce
Q 006688 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (635)
Q Consensus 433 l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr 512 (635)
++.+|++|..++++.++.++..|+++++.+. +++..+++.|+++++|++..+|+++..+...... ...+++++|
T Consensus 240 l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~--~~~~~~~l~ 313 (538)
T TIGR03208 240 LMASPMAHQTGFMYGLMMPLILNATAVLQDI----WNPARAAELIRETGVTFTMASTPFLTDLCRAVKE--SGAPVPSLF 313 (538)
T ss_pred EEeCCchhHHHHHHHHHHHHHcCCEEEecCc----cCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc--cCCCCCcce
Confidence 9999999998887888999999999999753 5999999999999999999999999998765421 234678999
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcc
Q 006688 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592 (635)
Q Consensus 513 ~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~ 592 (635)
.+++||+++++++++++.+.++ .+++|.||+||++.+.+............++|+|++|++++|+|+++++++.|+.
T Consensus 314 ~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~ 390 (538)
T TIGR03208 314 TFLCAGAPIPGILVERAWELLG---ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET 390 (538)
T ss_pred EEEEcCCCCCHHHHHHHHHHcC---CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC
Confidence 9999999999999999998886 7899999999998765443322112234679999999999999999999999999
Q ss_pred eEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 593 GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|||+|+| ++++.||+++|+.+.. ..+|||+|||+|++
T Consensus 391 Gel~v~g--~~~~~gy~~~~~~~~~----~~~~~~~TGD~~~~ 427 (538)
T TIGR03208 391 GRLLVRG--CSNFGGYLKRPHLNST----DAEGWFDTGDLAFQ 427 (538)
T ss_pred cEEEEec--CcccccccCCcccccc----cCCCceeccceEEE
Confidence 9999999 8999999999987642 24789999999985
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=457.12 Aligned_cols=382 Identities=19% Similarity=0.198 Sum_probs=305.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|.++ ++++|+++|+++.+ +++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|
T Consensus 45 ~~~~l~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 117 (537)
T PRK13382 45 PTSGFAIA-AQRCPDRPGLIDEL------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIG 117 (537)
T ss_pred HHHHHHHH-HHhCCCCeEEEeCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcC
Confidence 67889888 89999999999643 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++|++.... ..+...... .+....++.++...
T Consensus 118 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~---------- 174 (537)
T PRK13382 118 ADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS---------ATVDRALAD----CPQATRIVAWTDED---------- 174 (537)
T ss_pred cEEEecCcccCHHHHHHHHHhcCCCEEEEchhhH---------HHHHHHHhh----ccccceEEEecCCc----------
Confidence 9999999999999999999999999999986532 122221111 12222333222110
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
....+.+......... ....+++.++++|||||||.||||+++|++++.+... ....+.+.++++++...|++|.
T Consensus 175 --~~~~~~~~~~~~~~~~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~ 249 (537)
T PRK13382 175 --HDLTVEVLIAAHAGQR--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKA-ILDRTPWRAEEPTVIVAPMFHA 249 (537)
T ss_pred --ccccHHHHhhccCcCC--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHH-HHHhhCCCCCCeEEEecChHhh
Confidence 0111222222111111 1234688999999999999999999999886655443 3346778899999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++ ..++.++..|+++++.+. +++..+++.|+++++|++..+|++++.|++.........+++++|.+++|||++
T Consensus 250 ~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l 324 (537)
T PRK13382 250 WGF-SQLVLAASLACTIVTRRR----FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRM 324 (537)
T ss_pred hHH-HHHHHHHhcCcEEEECCC----cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCC
Confidence 886 577889999999998653 599999999999999999999999999987643222344567899999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~ 601 (635)
++++++.|.+.++ .+++|.||+||++.+++.... .....++++|+|++|++++|+|++++++|.|+.|||+|+|
T Consensus 325 ~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g-- 398 (537)
T PRK13382 325 RPDVVIAFMDQFG---DVIYNNYNATEAGMIATATPA-DLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRN-- 398 (537)
T ss_pred CHHHHHHHHHHcC---CcEEecccccccCcceecChh-HhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEc--
Confidence 9999999999987 579999999999876543322 1234678999999999999999999999999999999999
Q ss_pred CcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 602 ~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++.||+ ++.+.. + .+|||+|||++++
T Consensus 399 ~~~~~gY~--~~~~~~-~---~~g~~~TGDl~~~ 426 (537)
T PRK13382 399 DTQFDGYT--SGSTKD-F---HDGFMASGDVGYL 426 (537)
T ss_pred CCcccCcc--ccchhh-c---cCCCEeeCceEEE
Confidence 89999998 555543 3 2789999999985
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-51 Score=451.79 Aligned_cols=396 Identities=21% Similarity=0.262 Sum_probs=322.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.+.|+++ ++.+|+++|+++.+ +++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++
T Consensus 6 ~i~~~l~~~-~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~ 78 (513)
T PRK07656 6 TLPELLARA-ARRFGDKEAYVFGD------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKA 78 (513)
T ss_pred cHHHHHHHH-HHHCCCCeEEEeCC------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 477888888 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++..++++++++++++++.... ..... ....+.++.++........ .
T Consensus 79 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~-----~- 139 (513)
T PRK07656 79 GAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLG---------VDYSA----TTRLPALEHVVICETEEDD-----P- 139 (513)
T ss_pred CeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHH---------HHHHH----HhccCCccEEEEEcCcccc-----c-
Confidence 999999999999999999999999999999876421 11111 1122344555544432210 0
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.......|.++..............++++++|+|||||||.||+|.++|++++... ......++++++|++++.+|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 218 (513)
T PRK07656 140 HTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNA-ADWAEYLGLTEGDRYLAANPFFH 218 (513)
T ss_pred CccccccHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHH-HHHHHhhCCCCCCeEEEccchHH
Confidence 00012234444433222223344678999999999999999999999999976554 44555788999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
++++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ....++++|.+++||++
T Consensus 219 ~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~l~~v~~~g~~ 292 (513)
T PRK07656 219 VFGYKAGVNAPLMRGATILPLPV----FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR--SAEDLSSLRLAVTGAAS 292 (513)
T ss_pred HHHHHHHHHHHHHcCceEEecCc----CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc--CCCCccceeeEEecCCC
Confidence 99987778999999999999654 4899999999999999999999999999987542 34467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC-CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++++|.+.++. ..++|.||+||++++++...... ....+.++|+|++|++++|+|+++++++.|..|||+|+|
T Consensus 293 ~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~ 370 (513)
T PRK07656 293 MPVALLERFESELGV--DIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRG 370 (513)
T ss_pred CCHHHHHHHHHHcCC--CceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEc
Confidence 999999999999872 27999999999987665443221 112367899999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+.+.+. .+|||+|||+|++
T Consensus 371 --~~~~~gy~~~~~~~~~~~~--~~~~~~tGDl~~~ 402 (513)
T PRK07656 371 --PNVMKGYYDDPEATAAAID--ADGWLHTGDLGRL 402 (513)
T ss_pred --chhhhhhcCCHHHHhhhhc--cCCceeccceEEE
Confidence 8999999999998877663 3789999999985
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=454.29 Aligned_cols=391 Identities=22% Similarity=0.304 Sum_probs=312.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+++.++ ++++|+++|+++.+ ..+++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 25 ~~~~l~~~-~~~~~~~~a~~~~~----~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G 99 (537)
T PLN02246 25 LHDYCFER-LSEFSDRPCLIDGA----TGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRG 99 (537)
T ss_pred HHHHHHHH-HHhCCCCeEEEecC----CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 56777777 78899999998642 23689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++..++++++++++|+++... ..+..... ...+ .++.++...
T Consensus 100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~-----~~~~-~~i~~~~~~---------- 154 (537)
T PLN02246 100 AVTTTANPFYTPAEIAKQAKASGAKLIITQSCYV---------DKLKGLAE-----DDGV-TVVTIDDPP---------- 154 (537)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHHHHhh-----cCCc-eEEEeCCCC----------
Confidence 9999999999999999999999999999976542 11111111 0122 334333211
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCCCCCcEEEEeCCc
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADC 438 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~~l 438 (635)
.....+.+.........+.....++++++++|||||||.||||+++|++++.+...... ..+++.++|+++..+|+
T Consensus 155 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 233 (537)
T PLN02246 155 -EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM 233 (537)
T ss_pred -CCceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeech
Confidence 00111222222211222233456899999999999999999999999997765543222 24678899999999999
Q ss_pred ceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecC
Q 006688 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (635)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (635)
+|..++...++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++... .....++++|.+++||
T Consensus 234 ~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~gg 307 (537)
T PLN02246 234 FHIYSLNSVLLCGLRVGAAILIMPK----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV--VEKYDLSSIRMVLSGA 307 (537)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCC----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc--ccccCccceeEEEEec
Confidence 9999876677889999999999875 489999999999999999999999999987643 2344678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcccccccccccccccccccC---CCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceE
Q 006688 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGY 594 (635)
Q Consensus 519 e~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~---~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GE 594 (635)
+++++++.+.+.+.++ +..+++.||+||++.+++... ......+++++|+|+++++++|+| +++++++.|+.||
T Consensus 308 ~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge 385 (537)
T PLN02246 308 APLGKELEDAFRAKLP--NAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGE 385 (537)
T ss_pred CcCCHHHHHHHHHHcC--CCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceE
Confidence 9999999999999986 478999999999886543321 111224567899999999999999 5799999999999
Q ss_pred EEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 595 L~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|+| ++++.||+++|+.+.+.|. .+|||+|||+|++
T Consensus 386 l~v~g--~~~~~GY~~~~~~~~~~~~--~~~~~~TGD~~~~ 422 (537)
T PLN02246 386 ICIRG--PQIMKGYLNDPEATANTID--KDGWLHTGDIGYI 422 (537)
T ss_pred EEEEC--CchhccccCCchhhhhccc--CCCCeeecceEEE
Confidence 99999 9999999999999988764 3789999999984
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=463.02 Aligned_cols=396 Identities=19% Similarity=0.156 Sum_probs=301.1
Q ss_pred HHHHHhhhhhccCCCceEEEEEcC---CCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
+.++|+++ ++.+|+++|+++.+. ..+..+.+||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+
T Consensus 23 l~~~l~~~-a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~ 100 (631)
T PRK07769 23 LVRHVERW-AKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGAL 100 (631)
T ss_pred HHHHHHHH-HHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHH
Confidence 67889888 889999999997531 112347899999999999999999987 8999999999999999999999999
Q ss_pred HhCCeEEec-CCCCC--HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc
Q 006688 279 RIGAVHSVV-FAGFS--SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (635)
Q Consensus 279 ~~Ga~~vpl-d~~~~--~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (635)
++|++++|+ ++..+ .+++.+++++++++++|+++... ..+........ ......++.++...
T Consensus 101 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~---- 165 (631)
T PRK07769 101 YAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSA---------EGVRKFFRARP--AKERPRVIAVDAVP---- 165 (631)
T ss_pred HcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHH---------HHHHHHHhhcc--ccccceEEEccccc----
Confidence 999999999 56665 68999999999999999976531 11111111100 00112333332211
Q ss_pred cccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEe
Q 006688 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435 (635)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~ 435 (635)
+... .........++++++|+|||||||.||||+++|++++.+... ....+++.++|+++..
T Consensus 166 --------------~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~ 227 (631)
T PRK07769 166 --------------DEVG---ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQ-VIDALEGQEGDRGVSW 227 (631)
T ss_pred --------------cccc---cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHH-HHHHcCCCCcceEEEe
Confidence 0000 001112346789999999999999999999999997765433 4456888999999999
Q ss_pred CCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCC---cEEEecHHHHHHHHhcC---ccccccCCCC
Q 006688 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV---TIFYTAPTLVRSLMRDG---NEYVTRYSRK 509 (635)
Q Consensus 436 ~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~v---t~l~~~Ps~l~~l~~~~---~~~~~~~~l~ 509 (635)
+|++|+.|+. .++.+++.|+++++.+......++..+++.++++++ +++..+|+++..++... .......+++
T Consensus 228 ~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~ 306 (631)
T PRK07769 228 LPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLS 306 (631)
T ss_pred CCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchh
Confidence 9999999964 566678889999988542211388999999999886 78999999887766431 1001134688
Q ss_pred CceEEEecCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCCCC-------------------------
Q 006688 510 SLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW------------------------- 561 (635)
Q Consensus 510 sLr~v~~gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~~~------------------------- 561 (635)
+||.+++||++++++++++|.+.|+. +...++|.||+||++..++.......
T Consensus 307 ~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 386 (631)
T PRK07769 307 NVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPN 386 (631)
T ss_pred heeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCC
Confidence 99999999999999999999998742 22469999999998765543321110
Q ss_pred CCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC---------------CCCc
Q 006688 562 PQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------------PFPG 625 (635)
Q Consensus 562 ~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~---------------~~~g 625 (635)
.....++|+|+++++++|+| ++++++|.|+.|||+|+| |+++.|||++++.|.+.|.. ..+|
T Consensus 387 ~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~g--p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~g 464 (631)
T PRK07769 387 AVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHG--NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDAL 464 (631)
T ss_pred ceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecC--CCccccccCChhHHHHHHhhhcccccccccccCcccCCC
Confidence 01125799999999999999 579999999999999999 99999999999999988853 1258
Q ss_pred eEEcCCeEec
Q 006688 626 YYFTGDGCSR 635 (635)
Q Consensus 626 ~yrTGDlgr~ 635 (635)
||||||+|++
T Consensus 465 w~~TGDlg~~ 474 (631)
T PRK07769 465 WVRTGDYGVY 474 (631)
T ss_pred eeeccccccE
Confidence 9999999975
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=463.43 Aligned_cols=405 Identities=20% Similarity=0.197 Sum_probs=301.7
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~i 271 (635)
.|.+.....++.++|+++ ++++|+++|+++.+...+..+.+||+||.++++++|++|++.|+++||+|+|+++|+++++
T Consensus 41 ~~~~~~~~~~l~~~l~~~-a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~ 119 (624)
T PRK12582 41 RHPLGPYPRSIPHLLAKW-AAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHA 119 (624)
T ss_pred CCCCCCcccCHHHHHHHH-HHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHH
Confidence 344443344588999998 8999999999875421134578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCH-----HHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEE
Q 006688 272 IAMLACARIGAVHSVVFAGFSS-----DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346 (635)
Q Consensus 272 va~LA~l~~Ga~~vpld~~~~~-----~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 346 (635)
+++|||+++|++++|++|.++. +++.+++++++++++|+++... .......... ..++ ++.
T Consensus 120 ~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----------~~~~~~~~~~--~~~~-~i~ 185 (624)
T PRK12582 120 LMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP-----------FARALAALDL--LDVT-VVH 185 (624)
T ss_pred HHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH-----------HHHHHHhhhh--cCce-EEE
Confidence 9999999999999999999885 9999999999999999875421 1111111111 1222 333
Q ss_pred ecCCccccccccccCCCCcchhhhhcCcCCCC---CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh
Q 006688 347 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTK---CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (635)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 423 (635)
++.... ......+.++....... .......++++++|+|||||||.||||+++|++++.+.... ...
T Consensus 186 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~-~~~ 255 (624)
T PRK12582 186 VTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQ-EQL 255 (624)
T ss_pred EcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHH-HHh
Confidence 322110 00011233332211111 11123467899999999999999999999999977654333 333
Q ss_pred cCCCC---CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCc
Q 006688 424 FDYKP---SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (635)
Q Consensus 424 ~~~~~---~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~ 500 (635)
+...+ .++++.++|++|.+++...++.+|..|+++++.+..........+++.++++++|+++.+|++++.|++...
T Consensus 256 ~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~ 335 (624)
T PRK12582 256 RPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAME 335 (624)
T ss_pred ccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHh
Confidence 44443 589999999999998777778899999999997532111023456777889999999999999999876422
Q ss_pred c--ccccCCCCCceEEEecCCCCCHHHHHHHHHHh----CCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCC
Q 006688 501 E--YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV----GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFG 574 (635)
Q Consensus 501 ~--~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~----~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g 574 (635)
. ......+++||.+++||+++++++.++|.+.+ +. ++++++.||+||++.+++..... ..+++++|+|+||
T Consensus 336 ~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg 412 (624)
T PRK12582 336 KDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGH-RIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPG 412 (624)
T ss_pred hCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCC-CceEEeccccccccceeecccCC--CCCCCCCCcCCCC
Confidence 1 01123468999999999999999999998863 31 36799999999998655432221 2457899999999
Q ss_pred CeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 575 VQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 575 ~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|+ |.|++|||+|+| ++++.|||++|+.|.+.|. .+|||+|||+|++
T Consensus 413 ~~v~i~-------~~G~~GEl~vrg--~~v~~GY~~~p~~t~~~f~--~dgw~~TGDlg~~ 462 (624)
T PRK12582 413 VELKLA-------PVGDKYEVRVKG--PNVTPGYHKDPELTAAAFD--EEGFYRLGDAARF 462 (624)
T ss_pred cEEEEc-------cCCCceEEEEEC--CcccccccCCccchhhhcC--ccCCccccceEEe
Confidence 999996 457899999999 8999999999999988774 3799999999984
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=451.65 Aligned_cols=399 Identities=23% Similarity=0.319 Sum_probs=316.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
++.++|+++ ++++|+++|+++.+ +++||+||.++++++|..|++. |+++||+|+|+++|++++++++|||++
T Consensus 11 tl~~~l~~~-a~~~~~~~a~~~~~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 83 (546)
T PRK08314 11 SLFHNLEVS-ARRYPDKTAIVFYG------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR 83 (546)
T ss_pred CHHHHHHHH-HHHcCCCcceeecC------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 367888888 89999999999754 6899999999999999999999 999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc-ccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR-ENT 358 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~ 358 (635)
+|++++|++|.++.+++.+++++++++++|+++.... .+...... ..+..++.......... ...
T Consensus 84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 149 (546)
T PRK08314 84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAP---------KVAPAVGN-----LRLRHVIVAQYSDYLPAEPEI 149 (546)
T ss_pred cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhh---------hHHHHhhc-----cCcceEEEecchhhccccccc
Confidence 9999999999999999999999999999999876421 11111110 02233332211000000 000
Q ss_pred -------------ccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC
Q 006688 359 -------------KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (635)
Q Consensus 359 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 425 (635)
.........|.+...... ........++++++|+|||||||.||||+++|++++.++.. ....++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~-~~~~~~ 227 (546)
T PRK08314 150 AVPAWLRAEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVG-SVLWSN 227 (546)
T ss_pred CcccccccccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH-HHHhhC
Confidence 000011122333332211 12233456889999999999999999999999998776654 444688
Q ss_pred CCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccccc
Q 006688 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (635)
Q Consensus 426 ~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~ 505 (635)
++++|++++..|++|..++.+.++.+|.+|+++++.+. +++..+++.++++++|++.++|+++..++.... ...
T Consensus 228 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~--~~~ 301 (546)
T PRK08314 228 STPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR----WDREAAARLIERYRVTHWTNIPTMVVDFLASPG--LAE 301 (546)
T ss_pred CCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC----CCHHHHHHHHHHhcCceecccHHHHHHHHhCCC--ccc
Confidence 89999999999999999987888899999999999875 489999999999999999999999999987643 234
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCC
Q 006688 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKG 584 (635)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g 584 (635)
.+++++|.+++||+++++++++++.+.++ .++++.||+||++..+...... .....++|+|++|++++|+| +++
T Consensus 302 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~ 376 (546)
T PRK08314 302 RDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETL 376 (546)
T ss_pred cCchhhheeeeccccCCHHHHHHHHHHcC---CcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCC
Confidence 56789999999999999999999999887 7899999999998665443222 23457899999999999999 579
Q ss_pred CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
++++.|..|||+|+| ++++.||+++++.+.+.|.. +.++||+|||+|++
T Consensus 377 ~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~ 426 (546)
T PRK08314 377 EELPPGEVGEIVVHG--PQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRM 426 (546)
T ss_pred cCCCCCCceEEEEEC--CchhccccCChhHhhhhhhhcCCCceEecCCEEEE
Confidence 999999999999999 89999999999998887753 22459999999975
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=445.28 Aligned_cols=377 Identities=20% Similarity=0.276 Sum_probs=308.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.+.|+++ |+.+|+++|+++.+ +.+||+||.++++++|+.|++ .|+++|++|+|+++|++++++++|||+++
T Consensus 4 ~~~~~~~~-a~~~p~~~a~~~~~------~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 4 IAYWIEKR-AYLHPDRIAIITEE------EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred HHHHHHHH-HHHCCCCeEEEECC------ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 56888888 89999999999643 789999999999999999985 79999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++..++++++++++++++... ..... .... .....++.+.+.
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~----~~~~-~~~~~~~~~~~~---------- 132 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQ---------NMALS----MQKV-SYVQRVISITSL---------- 132 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHH---------HHHHH----hhhc-cCcceEEEecch----------
Confidence 99999999999999999999999999999876532 11111 1111 122233333221
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.+...... .......++++++|+|||||||.||+|+++|+++..+..... ..++++++|+++..+|++|
T Consensus 133 --------~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~l~~~p~~~ 201 (496)
T PRK06839 133 --------KEIEDRKI--DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNT-FAIDLTMHDRSIVLLPLFH 201 (496)
T ss_pred --------HhhhccCC--CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHH-HHcCCCCCCeEEEeeCCcc
Confidence 11111111 112234568999999999999999999999999765544433 4578899999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++...++.++..|+++++.+. ++++.+++.++++++|++.++|++++.|++... ....+++++|.+++||++
T Consensus 202 ~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~~ 275 (496)
T PRK06839 202 IGGIGLFAFPTLFAGGVIIVPRK----FEPTKALSMIEKHKVTVVMGVPTIHQALINCSK--FETTNLQSVRWFYNGGAP 275 (496)
T ss_pred hhhHHHHHHHHHhcCcEEEEccC----CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc--cccCCCcccceEEECCCC
Confidence 99877777889999999998754 499999999999999999999999999998753 234567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++++.+.+. + .++++.||+||++..++.........+.+++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 276 ~~~~~~~~~~~~-g---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~- 350 (496)
T PRK06839 276 CPEELMREFIDR-G---FLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRG- 350 (496)
T ss_pred CCHHHHHHHHHh-C---CeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEEC-
Confidence 999999999876 4 78999999999986544332222335678899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+...+ .+|||+|||+|++
T Consensus 351 -~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~ 381 (496)
T PRK06839 351 -PNVMKEYWNRPDATEETI---QDGWLCTGDLARV 381 (496)
T ss_pred -CCcchhhcCChHHHHHHH---cCCCeeecceEEE
Confidence 899999999999887765 3789999999985
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=454.06 Aligned_cols=396 Identities=19% Similarity=0.195 Sum_probs=300.8
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCC----CccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDP----GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~----~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
+.++|+++ ++++|+++|+++.+..+ ...+.+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 8 ~~~~l~~~-a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~ 86 (552)
T PRK09274 8 IARHLPRA-AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFAL 86 (552)
T ss_pred HHHHHHHH-HHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHH
Confidence 56778887 88999999999854210 01237999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
+++|++++|++|.++.+++.+++++++++++|+++... ........ .......++.++...
T Consensus 87 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~----------~~~~~~~~---~~~~~~~~i~~~~~~------ 147 (552)
T PRK09274 87 FKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH----------LARRLFGW---GKPSVRRLVTVGGRL------ 147 (552)
T ss_pred HHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH----------HHHHHhcc---Cccchhheecccccc------
Confidence 99999999999999999999999999999999864210 00000000 001222233322110
Q ss_pred cccCCCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 358 TKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
......+.+..... ..........++++++|+|||||||.||||+++|++++... ......+++.++|+.++..
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 222 (552)
T PRK09274 148 ----LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQI-EALREDYGIEPGEIDLPTF 222 (552)
T ss_pred ----ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHH-HHHHHHhCCCCCceeeecc
Confidence 00011122222111 11122234567899999999999999999999999976554 4444578899999999888
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCC---CCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceE
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGA---PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~---~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~ 513 (635)
|+.|.. .+..|+++++.+.. +..+++..+++.|++++||+++++|++++.|++.... ...++++||.
T Consensus 223 pl~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~lr~ 292 (552)
T PRK09274 223 PLFALF--------GPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEA--NGIKLPSLRR 292 (552)
T ss_pred CHHHhh--------hhhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhh--cCCCCchhhE
Confidence 876532 34568888886521 1124899999999999999999999999999876431 3457889999
Q ss_pred EEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC------C--CCCCCCCCCCCCCCCeEEEEcC---
Q 006688 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------A--WPQKPGSATFPFFGVQPVIVDE--- 582 (635)
Q Consensus 514 v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~--~~~~~~siG~pl~g~~v~IvD~--- 582 (635)
+++||+++++++++++.+.++. ++++++.||+||++.+++..... . ......++|+|++|++++|+|+
T Consensus 293 ~~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~ 371 (552)
T PRK09274 293 VISAGAPVPIAVIERFRAMLPP-DAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDA 371 (552)
T ss_pred EEecCCcCCHHHHHHHHHHcCC-CceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEecccc
Confidence 9999999999999999999862 26899999999998655432211 0 0112347999999999999994
Q ss_pred ------CCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCc--eEEcCCeEec
Q 006688 583 ------KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSR 635 (635)
Q Consensus 583 ------~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g--~yrTGDlgr~ 635 (635)
++++++.|+.|||+|+| +.++.|||++|+.+...|+.+.+| ||+|||+|++
T Consensus 372 ~~~~~~~~~~~~~g~~Gel~v~g--~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~ 430 (552)
T PRK09274 372 PIPEWDDALRLATGEIGEIVVAG--PMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYL 430 (552)
T ss_pred ccccccccccCCCCCeeEEEEec--CcccccccCChHHhhhhhcccCCCCcEEEcCCEEEE
Confidence 56789999999999999 899999999999998887654567 9999999985
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=451.09 Aligned_cols=396 Identities=20% Similarity=0.302 Sum_probs=314.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ ++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 25 l~~~~~~~-~~~~pd~~a~~~~~-----~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G 98 (547)
T PRK06087 25 LADYWQQT-ARAMPDKIAVVDNH-----GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98 (547)
T ss_pred HHHHHHHH-HHHCCCceEEEcCC-----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 77899988 89999999998632 2689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++++++..... .....+... ......++.++.++...+.
T Consensus 99 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------- 162 (547)
T PRK06087 99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQT----RPVDLILPL----QNQLPQLQQIVGVDKLAPA-------- 162 (547)
T ss_pred cEEeccchhcCHHHHHHHHHhcCCeEEEEecccccc----cHHHHHHHH----HhhCCCCcEEEEeCCcCCC--------
Confidence 999999999999999999999999999998654221 111122221 1122344556655432100
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
.....+.++..............++++++|+|||||||.||+|+++|++++.... .....++++++|++++..|++|.
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~h~ 240 (547)
T PRK06087 163 -TSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER-AYCARLNLTWQDVFMMPAPLGHA 240 (547)
T ss_pred -cCccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHH-HHHHhcCCCCCCeEEEecchHHH
Confidence 0011223332222111122335678999999999999999999999999766543 34456788999999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++...++.+++.|+++++.+. +++..+++.|+++++|++..+|..+..+++.... ...+++++|.+++||+++
T Consensus 241 ~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~--~~~~~~~lr~i~~gG~~~ 314 (547)
T PRK06087 241 TGFLHGVTAPFLIGARSVLLDI----FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEK--QPADLSALRFFLCGGTTI 314 (547)
T ss_pred HHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhcccc--CCCCCCCeEEEEEcCCCC
Confidence 9887788899999999999865 4899999999999999999887777777665331 345678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~ 601 (635)
++++.+.+.+. + +++++.||+||++..+.............++|+|++++.++|+|+++++++.|+.|||+|+|
T Consensus 315 ~~~~~~~~~~~-~---~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g-- 388 (547)
T PRK06087 315 PKKVARECQQR-G---IKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRG-- 388 (547)
T ss_pred CHHHHHHHHHc-C---CcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEec--
Confidence 99999887764 4 78999999999987655432221123345789999999999999999999999999999999
Q ss_pred CcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 602 ~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+.+.+.. +|||+|||+|++
T Consensus 389 ~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~ 420 (547)
T PRK06087 389 PNVFMGYLDEPELTARALDE--EGWYYSGDLCRM 420 (547)
T ss_pred ccccccccCCHHHHHHHhCC--CCCcCcCceEEE
Confidence 89999999999999887643 789999999985
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=452.78 Aligned_cols=385 Identities=20% Similarity=0.260 Sum_probs=295.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+.|.++ |+++|+++|+++.++ .+.+||+||+++++++|+.|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 16 ~~~~l~~~-a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G 90 (540)
T PRK05857 16 VLDRVFEQ-ARQQPEAIALRRCDG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLG 90 (540)
T ss_pred hHHHHHHH-HhhCCCcEEEeecCC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 56777777 899999999986532 3679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.++++.++++++|+++....... .+.+. ...+. .+.++.... .
T Consensus 91 ~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~------~~~~~-------~~~~~-~~~~~~~~~-----~--- 148 (540)
T PRK05857 91 AIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASS------AVPEA-------LHSIP-VIAVDIAAV-----T--- 148 (540)
T ss_pred eEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccc------ccccc-------ccccc-eeEeecccc-----c---
Confidence 99999999999999999999999999999876421100 00000 01111 222221100 0
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCCCCCcEEEEeCCc
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADC 438 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~~l 438 (635)
.. ..+.... ..........++++++++|||||||.||||+++|+++..+...... ..+++..+++++...|+
T Consensus 149 ---~~-~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 223 (540)
T PRK05857 149 ---RE-SEHSLDA-ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPA 223 (540)
T ss_pred ---cc-ccccccc-cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCc
Confidence 00 0000000 0001122346789999999999999999999999997654321111 12456678999999999
Q ss_pred ceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecC
Q 006688 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (635)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (635)
+|+.++. .++.+++.|+++++.+ .++..+++.|++++||+++++|++++.|++.... ...+++++|.+++||
T Consensus 224 ~h~~~l~-~~~~~l~~G~~~v~~~-----~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~gG 295 (540)
T PRK05857 224 THIGGLW-WILTCLMHGGLCVTGG-----ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKS--ANATVPSLRLVGYGG 295 (540)
T ss_pred cccchHH-HHHHHhhcceeEEecC-----CChhHHHHHHHhcCcceEEeChHHHHHHHhcccc--CCCcCccceEEEEcC
Confidence 9999864 6788999999987643 3788999999999999999999999999876432 345688999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC---CCCCCCCCCCCCCCCeEEEEcCCCCc------cCC
Q 006688 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVE------IEG 589 (635)
Q Consensus 519 e~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~siG~pl~g~~v~IvD~~g~~------vp~ 589 (635)
++++....+ +.+.++ +++++.||+||++...+...... ...+++++|+|++|++++|+|++++. ++.
T Consensus 296 ~~~~~~~~~-~~~~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~ 371 (540)
T PRK05857 296 SRAIAADVR-FIEATG---VRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPS 371 (540)
T ss_pred ccCCchhHH-HHHHhC---CeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCC
Confidence 999988775 445665 78999999999986443222111 12356789999999999999987763 245
Q ss_pred CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 590 g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+.|||+|+| ++++.||+++++.+.+.|. +|||+|||+|++
T Consensus 372 ~~~Gel~v~g--~~~~~GY~~~~~~t~~~~~---~g~~~TGDlg~~ 412 (540)
T PRK05857 372 ASFGTLWIKS--PANMLGYWNNPERTAEVLI---DGWVNTGDLLER 412 (540)
T ss_pred CCcceEEEeC--cchhhhhhCCccchhhhcC---CCceeccceEEE
Confidence 7899999999 8999999999999988874 789999999985
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=445.25 Aligned_cols=380 Identities=18% Similarity=0.223 Sum_probs=310.4
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +.+||.||.+++.++|..|.+.|++++++|+|+++|++++++++|||+++|
T Consensus 4 ~~~~~~~~-~~~~~~~~a~~~~~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (497)
T PRK06145 4 LSASIAFH-ARRTPDRAALVYRD------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76 (497)
T ss_pred HHHHHHHH-HHHCCCceEEEECC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 56888888 89999999999754 679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++++++...... . .....+.++...
T Consensus 77 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~----------~----------~~~~~~~~~~~~---------- 126 (497)
T PRK06145 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIV----------A----------LETPKIVIDAAA---------- 126 (497)
T ss_pred cEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhh----------h----------cccceEEecCcc----------
Confidence 9999999999999999999999999999986542100 0 001122222110
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
...+..+..............++++++++|||||||.||+|+++|+++...... ....++++.+|+++...|++|.
T Consensus 127 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~ 202 (497)
T PRK06145 127 ---QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSID-HVIALGLTASERLLVVGPLYHV 202 (497)
T ss_pred ---cchhHHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHH-HHHhhCCCCCcEEEEecCchhH
Confidence 000000100000011122346789999999999999999999999997654433 3346789999999999999998
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++....+.+++.|+++++.+. +++..+++.++++++|++.++|++++.|+..... ...+++++|.+++|||++
T Consensus 203 ~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--~~~~~~~l~~~~~gG~~~ 276 (497)
T PRK06145 203 GAFDLPGIAVLWVGGTLRIHRE----FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--DRFDLDSLAWCIGGGEKT 276 (497)
T ss_pred hHHHHHHHHHHhccCEEEECCc----CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--cccccccceEEEecCCCC
Confidence 8876666788999999999764 4999999999999999999999999999876542 345678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~ 601 (635)
++++++++.+.++ +.++++.||+||++..++.........+.+++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 277 ~~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g-- 352 (497)
T PRK06145 277 PESRIRDFTRVFT--RARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRG-- 352 (497)
T ss_pred CHHHHHHHHHHcC--CCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEEC--
Confidence 9999999999987 478999999999987554432222233567899999999999999999999999999999999
Q ss_pred CcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 602 ~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+.+.|. ++||+|||+|++
T Consensus 353 ~~~~~Gy~~~~~~~~~~~~---~~~~~TGDl~~~ 383 (497)
T PRK06145 353 PKVTKGYWKDPEKTAEAFY---GDWFRSGDVGYL 383 (497)
T ss_pred cchhhhhcCChHHHHHHHh---CCCeeccceEEE
Confidence 8999999999999998874 789999999985
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=459.50 Aligned_cols=395 Identities=19% Similarity=0.180 Sum_probs=297.0
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCC---CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
+.++++++ ++++|+++|+++.+.. .+..+.+||+||.++++++|++|++. +++||+|+|+++|++++++++|||+
T Consensus 36 ~~~~~~~~-~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~ 113 (612)
T PRK12476 36 LISLIERN-IANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAI 113 (612)
T ss_pred HHHHHHHH-HHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHH
Confidence 67788888 7899999999975321 02346899999999999999999987 9999999999999999999999999
Q ss_pred HhCCeEEec-CCCCC--HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc
Q 006688 279 RIGAVHSVV-FAGFS--SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (635)
Q Consensus 279 ~~Ga~~vpl-d~~~~--~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (635)
++|++++|+ ++.++ .+++.+++++++++++|+++... ..+......+ .......++.++...
T Consensus 114 ~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~--~~~~~~~~i~~~~~~---- 178 (612)
T PRK12476 114 KAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAA---------EAVEGFLRNL--PRLRRPRVIAIDAIP---- 178 (612)
T ss_pred HcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHH---------HHHHHHHhhc--ccccCceEEEecccc----
Confidence 999999999 68777 89999999999999999976532 1111111110 001122344433211
Q ss_pred cccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC-CCCCcEEEE
Q 006688 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWC 434 (635)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~~d~~l~ 434 (635)
.............++|+++|+|||||||.||||+++|++++.+.... ...++ +.+++++++
T Consensus 179 -----------------~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~-~~~~~~~~~~~~~l~ 240 (612)
T PRK12476 179 -----------------DSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQM-ILSIDLLDRNTHGVS 240 (612)
T ss_pred -----------------ccccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHH-HHHhccCCCCceEEE
Confidence 00000111123467899999999999999999999999976654433 33466 788999999
Q ss_pred eCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHH--HcCCcEEEecHHHHHHHHhcCc--cccccCCCCC
Q 006688 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD--KYKVTIFYTAPTLVRSLMRDGN--EYVTRYSRKS 510 (635)
Q Consensus 435 ~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~--~~~vt~l~~~Ps~l~~l~~~~~--~~~~~~~l~s 510 (635)
++|++|+.++. .++.+++.|+++++.......+++..+++.++ ++++++++.+|+++..++.... ......++++
T Consensus 241 ~~Pl~h~~g~~-~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~ 319 (612)
T PRK12476 241 WLPLYHDMGLS-MIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSN 319 (612)
T ss_pred eCCcccccchH-HHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhH
Confidence 99999999964 44555566777766643221138899999995 5899999999999888776421 0012346789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhC---CCCcccccccccccccccccccCCCCC-------------------------C
Q 006688 511 LRVLGSVGEPINPSAWRWFFNVVG---DSRCPISDTWWQTETGGFMITPLPGAW-------------------------P 562 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~~~---~~~~~l~n~YG~TE~~~~~~~~~~~~~-------------------------~ 562 (635)
+| +++||++++++++++|.+.++ .+...+++.||+||++..++...++.. .
T Consensus 320 lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 398 (612)
T PRK12476 320 VV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNA 398 (612)
T ss_pred he-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCc
Confidence 99 999999999999999999883 223469999999998765433211100 0
Q ss_pred CCCCCCCCCCCCCeEEEEcCC-CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC----------------CCCc
Q 006688 563 QKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----------------PFPG 625 (635)
Q Consensus 563 ~~~~siG~pl~g~~v~IvD~~-g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~----------------~~~g 625 (635)
.+.+++|+|++|++++|+|++ ++++|.|++|||+|+| ++++.|||++|+.|.+.|.. ..++
T Consensus 399 ~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~ 476 (612)
T PRK12476 399 VAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHG--DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGT 476 (612)
T ss_pred ceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcC--CcccccccCChHHHHHHHhhhhccccccccccccccCCCC
Confidence 123579999999999999987 9999999999999999 89999999999999988752 1235
Q ss_pred eEEcCCeEec
Q 006688 626 YYFTGDGCSR 635 (635)
Q Consensus 626 ~yrTGDlgr~ 635 (635)
||+|||+|++
T Consensus 477 w~~TGDlg~~ 486 (612)
T PRK12476 477 WLRTGDLGVY 486 (612)
T ss_pred eeecccccee
Confidence 9999999974
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=451.96 Aligned_cols=399 Identities=19% Similarity=0.264 Sum_probs=307.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
++.++|+++ ++.+|+++|+++.+ +.+||+||.++++++|+.|.+ .|+++||+|+|+++|++++++++|||++
T Consensus 25 ~~~~~l~~~-a~~~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 25 NIQAVLKQS-CQRFADKPAFSNLG------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred cHHHHHHHH-HHhCCCCeeEEECC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 377888888 88999999999643 689999999999999999997 6999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc-ccc-
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT-REN- 357 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~- 357 (635)
+|++++|++|.++.+++.+++++++++++|+++.... .+.+.... ..++.++..+...... ...
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 163 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAH---------LAEKVLPK-----TGVKHVIVTEVADMLPPLKRL 163 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhh---------hHHHhhhc-----cCcceeEEecccccccchhhh
Confidence 9999999999999999999999999999999765321 11111110 1223333221100000 000
Q ss_pred -------------cccCCCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh
Q 006688 358 -------------TKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (635)
Q Consensus 358 -------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 423 (635)
..........+.+.+.... .........++++++|+|||||||.||||+++|++++.+.... ...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~-~~~ 242 (562)
T PRK05677 164 LINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQC-RAL 242 (562)
T ss_pred hcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHH-HHH
Confidence 0000001112222221111 1111233467999999999999999999999999976654332 222
Q ss_pred c--CCCC-CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCc
Q 006688 424 F--DYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (635)
Q Consensus 424 ~--~~~~-~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~ 500 (635)
+ .+.. .++++..+|++|..++.+.++.++..|++.++.+.. +++..+++.|+++++|+++.+|+++..|+....
T Consensus 243 ~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 319 (562)
T PRK05677 243 MGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNP---RDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA 319 (562)
T ss_pred hccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCc---ccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc
Confidence 3 2343 468889999999998777788888899988877643 488999999999999999999999999987532
Q ss_pred cccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEE
Q 006688 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (635)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~Iv 580 (635)
....+++++|.+++||+++++++++.|.+.++ +++++.||+||++.++...... ..+++++|+|++++.++|+
T Consensus 320 --~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~ 392 (562)
T PRK05677 320 --FRKLDFSALKLTLSGGMALQLATAERWKEVTG---CAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVI 392 (562)
T ss_pred --cccCChhhceEEEEcCccCCHHHHHHHHHHcC---CCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEE
Confidence 22345679999999999999999999999876 7899999999988665543322 2456789999999999999
Q ss_pred cCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 581 D~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|++++++|.|+.|||+|+| +.+++||+++|+.+.+.|. .+|||+|||+|++
T Consensus 393 d~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~g~~~TGDlg~~ 443 (562)
T PRK05677 393 DDDGNELPLGEVGELCVKG--PQVMKGYWQRPEATDEILD--SDGWLKTGDIALI 443 (562)
T ss_pred CCCCCCCCCCCCeEEEEec--CccchhhcCCchhhhhccC--CCCcccccceEEE
Confidence 9999999999999999999 8999999999999988765 3789999999985
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=444.29 Aligned_cols=367 Identities=23% Similarity=0.295 Sum_probs=302.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ +..+||++|+++.+ +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 3 ~~~~~l~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (483)
T PRK03640 3 TMPNWLKQR-AFLTPDRTAIEFEE------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75 (483)
T ss_pred cHHHHHHHH-HHhCCCceEEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 367889888 89999999999654 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++..+.+++..++++++++++|+++..... .... .. +.
T Consensus 76 G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---------~~~~-----------~~-~~-------------- 120 (483)
T PRK03640 76 GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAK---------LIPG-----------IS-VK-------------- 120 (483)
T ss_pred CcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHH---------Hhhh-----------cc-cc--------------
Confidence 9999999999999999999999999999997654211 0000 00 00
Q ss_pred CCCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
+.++.... ..........++++++|+|||||||.||+|+++|++++....... ..++++++|++++.+|++
T Consensus 121 -------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~ 192 (483)
T PRK03640 121 -------FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA-LNLGLTEDDCWLAAVPIF 192 (483)
T ss_pred -------HHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHH-HhcCCCcCcEEEEecCHH
Confidence 01111000 111112234678999999999999999999999999776554433 358899999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++ ..++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|+..... .....+||.+++||+
T Consensus 193 ~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~~lr~~~~~g~ 264 (483)
T PRK03640 193 HISGL-SILMRSVIYGMRVVLVEK----FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGE---GTYPSSFRCMLLGGG 264 (483)
T ss_pred HHHHH-HHHHHHHhcCCEEEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCc---cccCCcceEEEEcCC
Confidence 99886 457889999999999875 4899999999999999999999999999865431 123468999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++++.+.+. + +++++.||+||++..++.........+++++|+|+++++++|+|+. ++++.|+.|||+|+|
T Consensus 265 ~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~Gel~v~g 339 (483)
T PRK03640 265 PAPKPLLEQCKEK-G---IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEEGEIVVKG 339 (483)
T ss_pred CCCHHHHHHHHHh-C---CCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCceEEEEEC
Confidence 9999999988764 4 8899999999987644333222233567899999999999999964 899999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++.||+++++.+...|. +|||+|||++++
T Consensus 340 --~~~~~gy~~~~~~~~~~~~---~~~~~tGDl~~~ 370 (483)
T PRK03640 340 --PNVTKGYLNREDATRETFQ---DGWFKTGDIGYL 370 (483)
T ss_pred --cchhhhhcCCHHHHHHHHh---cCCeeccceEEE
Confidence 9999999999999988763 789999999985
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=448.00 Aligned_cols=404 Identities=16% Similarity=0.164 Sum_probs=309.8
Q ss_pred cCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHH
Q 006688 193 WFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI 272 (635)
Q Consensus 193 w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iv 272 (635)
|.+....+.+.++|+++ ++++|+++|+++.++ .+.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++
T Consensus 9 ~~~~~~~~~l~~~l~~~-a~~~p~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 83 (534)
T PRK05852 9 PMASDFGPRIADLVEVA-ATRLPEAPALVVTAD----RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV 83 (534)
T ss_pred chhhhhcccHHHHHHHH-HHhCCCCcEEEecCC----CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence 44444556689999998 899999999997542 3679999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 006688 273 AMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (635)
Q Consensus 273 a~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (635)
++|||+++|++++|++|.++.+++.+++++++++++|++......... ... ......+.+.....
T Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~ 148 (534)
T PRK05852 84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAE------------PTT---RWWPLTVNVGGDSG 148 (534)
T ss_pred HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcc------------ccc---cccceeeeeccccc
Confidence 999999999999999999999999999999999999987643210000 000 00111111111000
Q ss_pred ccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEE
Q 006688 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (635)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 432 (635)
.. ...+ ...+...... ..........++++++|+|||||||.||||+++|+++..+. ......+++.++|++
T Consensus 149 ~~--~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~-~~~~~~~~~~~~d~~ 220 (534)
T PRK05852 149 PS--GGTL----SVHLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSV-RAIITGYRLSPRDAT 220 (534)
T ss_pred cc--cccc----ccccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHH-HHHHHHhCCCCcceE
Confidence 00 0000 0000000000 00011111235788999999999999999999999976554 444456789999999
Q ss_pred EEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCce
Q 006688 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (635)
Q Consensus 433 l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr 512 (635)
++.+|++|..++...++.+++.|+++++.+.. .+++..+++.|+++++|+++++|+++..|.+.........+++++|
T Consensus 221 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr 298 (534)
T PRK05852 221 VAVMPLYHGHGLIAALLATLASGGAVLLPARG--RFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALR 298 (534)
T ss_pred EEecCcchhHHHHHHHHHHHhcCCeEEeCCCc--CcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCee
Confidence 99999999999877889999999998886532 2488999999999999999999999999988654221234568999
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC------CCCCCCCCCCCCCCCCeEEEEcCCCCc
Q 006688 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------AWPQKPGSATFPFFGVQPVIVDEKGVE 586 (635)
Q Consensus 513 ~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~~~~~~~siG~pl~g~~v~IvD~~g~~ 586 (635)
.++++|+++++++++++.+.++ .++++.||+||++..++..... ......+.+|+ .+|++++|+|+++++
T Consensus 299 ~i~~~G~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~~ 374 (534)
T PRK05852 299 FIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGLP 374 (534)
T ss_pred EEEECCCCCCHHHHHHHHHHhC---CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCCC
Confidence 9999999999999999999987 7899999999998755432111 01112334444 699999999999999
Q ss_pred cCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 587 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 587 vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++.|+.|||+|+| +.+++||+++++.+.+.|. +|||+|||+|++
T Consensus 375 ~~~g~~Gel~v~g--~~v~~gY~~~~~~t~~~~~---~g~~~TGD~~~~ 418 (534)
T PRK05852 375 LPAGAVGEVWLRG--TTVVRGYLGDPTITAANFT---DGWLRTGDLGSL 418 (534)
T ss_pred CCCCCceEEEEec--CcccchhcCCcccchhhhc---CCCcccCceEEE
Confidence 9999999999999 8999999999999988763 789999999985
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=445.18 Aligned_cols=393 Identities=19% Similarity=0.246 Sum_probs=312.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++.+|+++|+++.+ +++||+||.++++++|..|++.|+++|++|+|+++|++++++++|||+++
T Consensus 24 ~l~~~~~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 96 (527)
T TIGR02275 24 PLTDILRDQ-AARYPDAIAIICGN------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKL 96 (527)
T ss_pred cHHHHHHHH-HHHCCCceEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence 378899998 89999999999643 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++++++.++.+++.+++++++++++++++.... ......... .....+.++.++......
T Consensus 97 G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------- 159 (527)
T TIGR02275 97 GIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSL----FDYDAFARQ----LQSKLPTLRNIIVAGQTR--------- 159 (527)
T ss_pred CeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccc----cchHHHHHH----HHhhCCcceEEEEecCCC---------
Confidence 999999999999999999999999999999765311 001111111 111123344444332110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
. .....+.+.......+.....++++++|+|||||||.||||+++|+++..+... ....+.++++|+++..+|++|
T Consensus 160 --~-~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~~P~~h 235 (527)
T TIGR02275 160 --V-EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRR-SVEICWLTQQTRYLCALPAAH 235 (527)
T ss_pred --C-cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHH-HHhhcCCCcCCEEEECCChHh
Confidence 0 000011111111111223456899999999999999999999999997765544 444688899999999999999
Q ss_pred ecchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 441 ~~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
.+++.. .++.++..|+++++.+. +++..+++.|+++++|++..+|+++..|++.... ...+++++|.+++||+
T Consensus 236 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~gG~ 309 (527)
T TIGR02275 236 NYPLSSPGALGVFYAGGCVVLAPD----PSPTDCFPLIERHKVTVTALVPPAVALWMQAASK--SRYDLSSLKLLQVGGA 309 (527)
T ss_pred hhhhhHHHHHHHHhcCCeEEECCC----CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc--cCCCccceEEEEEcCC
Confidence 888654 47889999999998754 4899999999999999999999999999876542 3456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++++++.+++.+.++ .++++.||+||+++.... .........+++|+|+ ++..++|+|+++++++.|+.|||+|+
T Consensus 310 ~l~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~ 385 (527)
T TIGR02275 310 KFSEAAARRVPAVFG---CQLQQVFGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTR 385 (527)
T ss_pred CCCHHHHHHHHHHhC---CeEEeeeccCccCccccC-CCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999887 789999999997643322 1111223456899999 58999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| +.++.||+++++.+.+.|.. +|||+|||+|++
T Consensus 386 g--~~~~~gY~~~~~~~~~~~~~--dg~~~TGDl~~~ 418 (527)
T TIGR02275 386 G--PYTFRGYYKAPEHNAAAFDA--EGFYYTGDLVRL 418 (527)
T ss_pred C--CccchhhcCChhHhHhhcCc--CCCEEcCceEEE
Confidence 9 89999999999999887754 789999999985
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=447.47 Aligned_cols=404 Identities=19% Similarity=0.224 Sum_probs=318.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.+. .+.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~-~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~ 93 (558)
T PRK12583 19 TIGDAFDAT-VARFPDREALVVRHQ----ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARI 93 (558)
T ss_pred cHHHHHHHH-HHHCCCCeEEEecCC----CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhh
Confidence 478999998 899999999997542 378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHh---------hhcCCCccEEEEecCCc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC---------AKSGISVDVCLTYENQS 351 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~vi~~~~~~ 351 (635)
|++++|+++.++.+++.+++++++++++|+++....... ...+......+ ....+.+..++..+...
T Consensus 94 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
T PRK12583 94 GAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDY----HAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP 169 (558)
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccch----hHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence 999999999999999999999999999999876432111 11111111110 01112333344333211
Q ss_pred cccccccccCCCCcchhhhhcCcCC------CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC
Q 006688 352 AMTRENTKWQDGRDIWWQDVVPKYP------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (635)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 425 (635)
. .....|.+...... .........++++++++|||||||.||||.++|++++.++ ......++
T Consensus 170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~-~~~~~~~~ 238 (558)
T PRK12583 170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNG-YFVAESLG 238 (558)
T ss_pred C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHH-HHHHHHhC
Confidence 0 00112222211110 0011123457899999999999999999999999976654 34445688
Q ss_pred CCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccccc
Q 006688 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (635)
Q Consensus 426 ~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~ 505 (635)
++++|+++...|++|..+.++.++.++..|+++++.... +++..+++.++++++|+++.+|+++..++.... ...
T Consensus 239 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~ 313 (558)
T PRK12583 239 LTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA---FDPLATLQAVEEERCTALYGVPTMFIAELDHPQ--RGN 313 (558)
T ss_pred CCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC---CCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc--ccC
Confidence 999999999999999999888889999999999986532 489999999999999999999999988886543 234
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCC-CCCCCCCCCCCCCCCCCeEEEEcCCC
Q 006688 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEKG 584 (635)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~siG~pl~g~~v~IvD~~g 584 (635)
.+++++|.+++||+++++++++++.+.++ ...+++.||+||++.+++.... .....++.++|+|++++.++|+|+++
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~ 391 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEMH--MAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDG 391 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHcC--CcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCC
Confidence 56789999999999999999999999987 3579999999999876554322 12234567899999999999999999
Q ss_pred CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++.|+.|||+|+| +.++.||+++++.+...|. .+|||+|||+|++
T Consensus 392 ~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~ 438 (558)
T PRK12583 392 ATVPRGEIGELCTRG--YSVMKGYWNNPEATAESID--EDGWMHTGDLATM 438 (558)
T ss_pred CCCCCCCeeEEEEEe--CccchhhcCChHHHHhhcC--CCCCeeccceEEE
Confidence 999999999999999 8999999999999877764 3789999999975
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=448.47 Aligned_cols=404 Identities=19% Similarity=0.235 Sum_probs=318.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.+. .+.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 17 ~l~~~l~~~-~~~~~~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 91 (559)
T PRK08315 17 TIGQLLDRT-AARYPDREALVYRDQ----GLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKI 91 (559)
T ss_pred cHHHHHHHH-HHHCCCCeEEEEcCC----CeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 478999998 899999999997542 378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhh---------hcCCCccEEEEecCCc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA---------KSGISVDVCLTYENQS 351 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~vi~~~~~~ 351 (635)
|++++|++|..+.+++..++++++++++|+++..... +....+.+....+. ...+....++.++...
T Consensus 92 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 92 GAILVTINPAYRLSELEYALNQSGCKALIAADGFKDS----DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCCEEEEecccccc----chHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999998764321 11111111111110 0012233344333211
Q ss_pred cccccccccCCCCcchhhhhcCcC------CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC
Q 006688 352 AMTRENTKWQDGRDIWWQDVVPKY------PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (635)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 425 (635)
......+.+..... ..........++++++|+|||||||.||+|.++|++++.+. ......++
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~-~~~~~~~~ 236 (559)
T PRK08315 168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNG-YFIGEAMK 236 (559)
T ss_pred ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHH-HHHHHhcC
Confidence 00011222221111 00111223467889999999999999999999999976554 44455689
Q ss_pred CCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccccc
Q 006688 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (635)
Q Consensus 426 ~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~ 505 (635)
++++|+++...|+.|..++++.++.+|..|+++++.... +++..+++.++++++|+++++|+++..++.... ...
T Consensus 237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~--~~~ 311 (559)
T PRK08315 237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEG---FDPLATLAAVEEERCTALYGVPTMFIAELDHPD--FAR 311 (559)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCC---CCHHHHHHHHHHcCCeEEecchHHHHHHHhCcc--cCC
Confidence 999999999999999998888889999999999975432 489999999999999999999999998887643 234
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCC-CCCCCCCCCCCCCCCCCeEEEEcCC-
Q 006688 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEK- 583 (635)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~siG~pl~g~~v~IvD~~- 583 (635)
.++++||.+++||++++.++++.+.+.++ ..+++|.||+||++.+++.... .....++.++|+|++|++++|+|++
T Consensus 312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~ 389 (559)
T PRK08315 312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMH--MSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPET 389 (559)
T ss_pred CCchhhheeEecCCCCCHHHHHHHHHHcC--CcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCcc
Confidence 56789999999999999999999999987 3569999999999876544322 1122356789999999999999987
Q ss_pred CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 584 GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 584 g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++.|+.|||+|+| +++++||+++|+.+.+.|.. ++||+|||+|++
T Consensus 390 ~~~~~~g~~GEl~v~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~ 437 (559)
T PRK08315 390 GETVPRGEQGELCTRG--YSVMKGYWNDPEKTAEAIDA--DGWMHTGDLAVM 437 (559)
T ss_pred CCcCCCCCceEEEEEC--chhhhhhcCChhHHhhcCCC--CCCEEccceEEE
Confidence 9999999999999999 99999999999988776643 789999999975
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-50 Score=443.68 Aligned_cols=395 Identities=22% Similarity=0.240 Sum_probs=317.7
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
+++.++|.++ ++++|+++|+++.+ +.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||++
T Consensus 11 ~~l~~~l~~~-a~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~ 83 (523)
T PRK08316 11 QTIGDILRRS-ARRYPDKTALVFGD------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACAR 83 (523)
T ss_pred CCHHHHHHHH-HHHCCCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4588999988 89999999999754 7899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++|+++.++.+++..++++++++++++++.... .+....+.. . ...+....... ..
T Consensus 84 ~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~----~-~~~~~~~~~~~------~~ 143 (523)
T PRK08316 84 AGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAP---------TAEAALALL----P-VDTLILSLVLG------GR 143 (523)
T ss_pred cCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHH---------HHHHHhhhc----C-ccceeeeeccc------cc
Confidence 9999999999999999999999999999999876421 111111110 1 11111110000 00
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
........+.+................+++++|+|||||||.||+|.++|++++...... ...++++++|+++..+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~ 222 (523)
T PRK08316 144 EAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC-IVAGDMSADDIPLHALPLY 222 (523)
T ss_pred ccccchhhHHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH-HHHhCCCCCceEEEccCCc
Confidence 000111222333222222223334567899999999999999999999999977665444 4467899999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++...++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....+++++|.+++||+
T Consensus 223 h~~g~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~gg~ 296 (523)
T PRK08316 223 HCAQLDVFLGPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD--FDTRDLSSLRKGYYGAS 296 (523)
T ss_pred hhhhHHHHHHHHHhcCceEEEecC----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--cccCCcccceEEEEcCC
Confidence 988865556677899999999865 489999999999999999999999999988653 23456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++.++.+.+.+.++ +.++++.||+||++.+.+...........+++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 297 ~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~ 374 (523)
T PRK08316 297 IMPVEVLKELRERLP--GLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRS 374 (523)
T ss_pred cCCHHHHHHHHHHcC--CCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEEC
Confidence 999999999999886 478999999999987665443322234568899999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+.+.| .+|||+|||+|++
T Consensus 375 --~~~~~~y~~~~~~~~~~~---~~~~~~TGDl~~~ 405 (523)
T PRK08316 375 --PQLMLGYWDDPEKTAEAF---RGGWFHSGDLGVM 405 (523)
T ss_pred --CchhhhhcCCHHHHHHHh---hCCCeeccceEEE
Confidence 999999999999998876 3789999999985
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=439.60 Aligned_cols=392 Identities=25% Similarity=0.376 Sum_probs=317.8
Q ss_pred chHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 199 ~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
+|.+.++++++.++.+||++|++..+ +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~ 76 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDDI------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAI 76 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 56788999987457799999998543 789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 279 ~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
++|++++|+++.++.+++.++++.++++++|+++... ..+.+. ....+....++..+...
T Consensus 77 ~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~------- 136 (508)
T TIGR02262 77 RAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL---------PVIKAA----LGKSPHLEHRVVVGRPE------- 136 (508)
T ss_pred HcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH---------HHHHHH----HhcCCCccEEEEeCCCC-------
Confidence 9999999999999999999999999999999986532 112211 11224445555443211
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCc
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l 438 (635)
.....+.+...............++++++|+|||||||.||||+++|+++...........++++++|+++...|+
T Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 212 (508)
T TIGR02262 137 ----AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKL 212 (508)
T ss_pred ----cccccHHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCch
Confidence 0011222222221222222345678999999999999999999999999776554434456789999999999999
Q ss_pred ceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecC
Q 006688 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (635)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (635)
+|+.++...++.++..|+++++.++. +++..+++.|+++++|++.++|+++..++.... .......++|.+++||
T Consensus 213 ~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~--~~~~~~~~l~~~~~~G 287 (508)
T TIGR02262 213 FFAYGLGNALTFPMSVGATTVLMGER---PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN--LPAEDQVRLRLCTSAG 287 (508)
T ss_pred HHHHHHHHHHHHHHHcCceEEEeCCC---CCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc--ccccccccceeEEEcC
Confidence 99988767778889999999998753 489999999999999999999999998876532 1233457899999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 519 e~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
+++++++++.|.+.++ .++++.||+||++...+..... ..+.+++|+|++|+.++|+|+++++++.|++|||+|+
T Consensus 288 ~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~ 362 (508)
T TIGR02262 288 EALPAEVGQRWQARFG---VDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLIS 362 (508)
T ss_pred CCCCHHHHHHHHHHhC---CchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEe
Confidence 9999999999999987 7899999999998654433221 2346789999999999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| ++++.||+++++.+.+.| .+|||+|||++++
T Consensus 363 ~--~~~~~gY~~~~~~~~~~~---~~~~~~TGD~~~~ 394 (508)
T TIGR02262 363 G--PSSATMYWNNRAKTRDTF---QGEWTRSGDKYVR 394 (508)
T ss_pred c--CccccccCCCHHHhHhhh---hcCceeccceEEE
Confidence 9 899999999999998776 2689999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=440.29 Aligned_cols=369 Identities=19% Similarity=0.208 Sum_probs=300.6
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||.++++++|+.|.+.|. +|++|+|+++|++++++++|||+++|
T Consensus 3 ~~~~~~~~-a~~~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G 74 (487)
T PRK07638 3 ITKEYKKH-ASLQPNKIAIKEND------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAG 74 (487)
T ss_pred hHHHHHHH-HHhCCCCeEEecCC------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 56778888 89999999999654 789999999999999999999985 89999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.++++.++++++|++........ . .. ..++.++..
T Consensus 75 ~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---------~---------~~-~~~~~~~~~----------- 124 (487)
T PRK07638 75 WTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLP---------D---------EE-GRVIEIDEW----------- 124 (487)
T ss_pred eEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchh---------h---------cc-ceEEEehhh-----------
Confidence 99999999999999999999999999999875422100 0 00 112222211
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
.+................+++++|+|||||||.||||+++|++++.+.. .....+++.++|+++...++.|.
T Consensus 125 -------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~~l~~~ 196 (487)
T PRK07638 125 -------KRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFD-CNVHDFHMKREDSVLIAGTLVHS 196 (487)
T ss_pred -------hhhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHH-HHHHhcCcCCCCEEEEeecchHH
Confidence 1111111111111122357789999999999999999999999776554 44456889999999999999998
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.+ +..++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ...+.+.++++|+++
T Consensus 197 ~~-l~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------~~~~~~~~~~~G~~l 265 (487)
T PRK07638 197 LF-LYGAISTLYVGQTVHLMRK----FIPNQVLDKLETENISVMYTVPTMLESLYKENR------VIENKMKIISSGAKW 265 (487)
T ss_pred HH-HHHHHHHHccCcEEEEcCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC------cCCceeEEEEcCCCC
Confidence 76 4678889999999999864 599999999999999999999999999987622 134566678899999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~ 601 (635)
+.++.+++.+.++ +.+++|.||+||++.++.... .....++.++|+|++|++++|+|++|+++|+|+.|||+|+|
T Consensus 266 ~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~-- 340 (487)
T PRK07638 266 EAEAKEKIKNIFP--YAKLYEFYGASELSFVTALVD-EESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKS-- 340 (487)
T ss_pred CHHHHHHHHHHcC--CCeEEEEecCCccCceEEecc-cccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEec--
Confidence 9999999999987 588999999999987654432 22245677899999999999999999999999999999999
Q ss_pred CcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 602 ~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+.+.+ .+|||+|||+|++
T Consensus 341 ~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~ 371 (487)
T PRK07638 341 PQFFMGYIIGGVLARELN---ADGWMTVRDVGYE 371 (487)
T ss_pred ccceeeecCCHHHHhhhc---cCCcEecCccEeE
Confidence 889999999998876542 3789999999974
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=440.64 Aligned_cols=382 Identities=24% Similarity=0.299 Sum_probs=310.1
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+++.++ + .+|+++|+...+ .+.+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 5 l~~~~~~~-~-~~~~~~a~~~~~-----~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G 77 (504)
T PRK07514 5 LFDALRAA-F-ADRDAPFIETPD-----GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAG 77 (504)
T ss_pred HHHHHHHH-h-hCCCCeEEEeCC-----CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 67888877 6 899999998733 3689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++..++++++++++|+++.... .+...... .....++.++...
T Consensus 78 ~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~---------- 133 (504)
T PRK07514 78 AVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFA---------WLSKIAAA-----AGAPHVETLDADG---------- 133 (504)
T ss_pred cEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhH---------HHHHhhhc-----cCCceEEEecCCC----------
Confidence 99999999999999999999999999999866421 11111110 1223244333211
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
...+.+...............++++++|+|||||||.||+|.++|++++... ......++++++|++++..|+.|.
T Consensus 134 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~~ 209 (504)
T PRK07514 134 ---TGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNA-LTLVDYWRFTPDDVLIHALPIFHT 209 (504)
T ss_pred ---cccHHHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHH-HHHHHHhCCCCccEEEEecchHHH
Confidence 0011111111111222334568999999999999999999999999977654 444456889999999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++...++.++..|+++++.+. .++..+++.+. ++|++..+|+++..++.... .....++++|.+++||+++
T Consensus 210 ~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~~ 281 (504)
T PRK07514 210 HGLFVATNVALLAGASMIFLPK----FDPDAVLALMP--RATVMMGVPTFYTRLLQEPR--LTREAAAHMRLFISGSAPL 281 (504)
T ss_pred HHHHHHHHHHHhcCcEEEECCC----CCHHHHHHHHH--hheeeecHHHHHHHHHcCCC--CCcccccceeeEEecCCCC
Confidence 8877778899999999999865 48999999994 79999999999999987643 2345678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~ 600 (635)
++++++.|.+.++ .++++.||+||++..++.... ......++|+|+++++++|+| ++++++|.|+.|||+|+|
T Consensus 282 ~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~- 355 (504)
T PRK07514 282 LAETHREFQERTG---HAILERYGMTETNMNTSNPYD--GERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG- 355 (504)
T ss_pred CHHHHHHHHHHhC---CcceeecccccccccccCCcc--ccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEec-
Confidence 9999999999887 689999999998765443221 234567899999999999999 899999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++.||+++++.+.+.|.. +|||+|||+|++
T Consensus 356 -~~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~ 387 (504)
T PRK07514 356 -PNVFKGYWRMPEKTAEEFRA--DGFFITGDLGKI 387 (504)
T ss_pred -CCccccccCCchhhhhhccc--CCCeeecceEEE
Confidence 89999999999999887753 789999999975
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=446.24 Aligned_cols=399 Identities=22% Similarity=0.263 Sum_probs=311.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++++++ ++++|+++|+++.+ +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 33 ~l~~~~~~~-~~~~p~~~a~~~~~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 33 TLVDLYDNA-VARFGDRPALDFFG------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred CHHHHHHHH-HHHCCCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 377889888 89999999999754 57999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc-cc--
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR-EN-- 357 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~-- 357 (635)
|++++|++|.++.+++.+++++++++++|+++.... .+...... ...+.++.++....... ..
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~ 171 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAP---------TVERLRRT-----TPLETIVSVNMIAAMPLLQRLA 171 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHH---------HHHhhhhc-----cccceeEeeecccccccccccc
Confidence 999999999999999999999999999999765321 11111110 12233333321100000 00
Q ss_pred --------------cccCCCCcchhhhhcCcCCCC----CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH
Q 006688 358 --------------TKWQDGRDIWWQDVVPKYPTK----CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (635)
Q Consensus 358 --------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~ 419 (635)
..........|.++....... .......++++++|+|||||||.||+|+++|++++.+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~ 251 (573)
T PRK05605 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQG 251 (573)
T ss_pred cccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHH
Confidence 000001122333333221111 12223567899999999999999999999999977655432
Q ss_pred HHHhcCC-CCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhc
Q 006688 420 FKYAFDY-KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (635)
Q Consensus 420 ~~~~~~~-~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~ 498 (635)
.....++ ..+++++...|+.|..++...++.++..|+++++.+. ++++.+++.|+++++|++.++|++++.|++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~ 327 (573)
T PRK05605 252 KAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA----PDIDLILDAMKKHPPTWLPGVPPLYEKIAEA 327 (573)
T ss_pred HhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCEEEEchHHHHHHHHhC
Confidence 2222223 3478999999999988877777888999999999864 4899999999999999999999999999986
Q ss_pred CccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEE
Q 006688 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (635)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~ 578 (635)
... ...++++||.+++||+++++++.+.|.+.++ .++++.||+||+++++...... ...+++++|+|++|+.++
T Consensus 328 ~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~ 401 (573)
T PRK05605 328 AEE--RGVDLSGVRNAFSGAMALPVSTVELWEKLTG---GLLVEGYGLTETSPIIVGNPMS-DDRRPGYVGVPFPDTEVR 401 (573)
T ss_pred ccc--cCCCchhccEEEECCCcCCHHHHHHHHHHhC---CCeecccccchhchhhhcCCcc-cCCcCCccccCCCCCEEE
Confidence 542 3456789999999999999999999988876 7899999999998766544322 124567899999999999
Q ss_pred EEcCC--CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 579 IVDEK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 579 IvD~~--g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|++ +++++.|+.|||+|+| +.++.||+++++.+.+.|. +|||+|||+|++
T Consensus 402 i~d~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~ 455 (573)
T PRK05605 402 IVDPEDPDETMPDGEEGELLVRG--PQVFKGYWNRPEETAKSFL---DGWFRTGDVVVM 455 (573)
T ss_pred EEcCCCCCccCCCCCeeEEEEec--CchhhhhcCChhHhhhccc---CCCcccCCEEEE
Confidence 99965 5899999999999999 8999999999999988764 579999999985
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=439.30 Aligned_cols=393 Identities=24% Similarity=0.301 Sum_probs=322.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++.+|+++|+.+.+ +.+||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 7 ~l~~~l~~~-~~~~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~ 79 (521)
T PRK06187 7 TIGRILRHG-ARKHPDKEAVYFDG------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKI 79 (521)
T ss_pred CHHHHHHHH-HHHCCCceEEEeCC------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 478999998 89999999999765 56999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++..+++.+++++++++.... +.+... ....+.++.++.++..... .
T Consensus 80 G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~------~ 140 (521)
T PRK06187 80 GAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV---------PLLAAI----LPQLPTVRTVIVEGDGPAA------P 140 (521)
T ss_pred CeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHH---------HHHHHH----hhccCCccEEEEecCcccc------c
Confidence 99999999999999999999999999999987642 222222 2222445556655443200 0
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.......+.+.+.............++++++++|||||||.||+|.++|+++...... ....++++++|+++..+|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~~~~~ 219 (521)
T PRK06187 141 LAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLA-VCAWLKLSRDDVYLVIVPMFH 219 (521)
T ss_pred cccccccHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHH-HHHhhCCCCCCEEEEeCCchH
Confidence 0111233444444333333344566789999999999999999999999997655544 444789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++. ..+.++..|+++++++. .++..+++.|+++++|+++++|++++.|++.... ...+++++|.+++|||+
T Consensus 220 ~~~~~-~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~l~~v~~~Ge~ 292 (521)
T PRK06187 220 VHAWG-LPYLALMAGAKQVIPRR----FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA--YFVDFSSLRLVIYGGAA 292 (521)
T ss_pred HhhHH-HHHHHHHhCCEEEecCC----CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--CccCcchhhEEEEcCcC
Confidence 88864 44559999999999876 3899999999999999999999999999987653 34567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCC----CCCCCCCCCCCCCCeEEEEcCCCCccCC--CcceE
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW----PQKPGSATFPFFGVQPVIVDEKGVEIEG--ECSGY 594 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~----~~~~~siG~pl~g~~v~IvD~~g~~vp~--g~~GE 594 (635)
++++++++|.+.++ +++++.||+||++.+......... .....++|+|++++.++|+|+++++++. |+.||
T Consensus 293 l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Ge 369 (521)
T PRK06187 293 LPPALLREFKEKFG---IDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGE 369 (521)
T ss_pred CCHHHHHHHHHHhC---cchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeE
Confidence 99999999999885 889999999999876554422211 1266789999999999999999999998 99999
Q ss_pred EEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 595 L~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|+| +.++.||+++++.+.+.|. +|||+|||+|++
T Consensus 370 l~v~~--~~~~~~y~~~~~~~~~~~~---~~~~~tGD~~~~ 405 (521)
T PRK06187 370 IIVRG--PWLMQGYWNRPEATAETID---GGWLHTGDVGYI 405 (521)
T ss_pred EEEEC--cchhhhhcCCHHHHHHHhh---CCceeccceEEE
Confidence 99999 8999999999998888764 679999999985
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=443.99 Aligned_cols=390 Identities=22% Similarity=0.248 Sum_probs=313.3
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+.++++ ++.+|+++|+.+.+ +.+||.||.++++++|..|.+.|+++|++|+|+++|+++++++++||+++|
T Consensus 19 ~~~~~~~~-a~~~~~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G 91 (542)
T PRK07786 19 WVNQLARH-ALMQPDAPALRFLG------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLG 91 (542)
T ss_pred HHHHHHHH-HHHCCCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 45667776 88999999999764 679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++..+.+++..+++++++++++++.... ..+ .......+.++.++.+++...
T Consensus 92 ~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~--------- 149 (542)
T PRK07786 92 AIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA---------PVA----TAVRDIVPLLSTVVVAGGSSD--------- 149 (542)
T ss_pred eEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH---------HHH----HHhhhccCccceEEEecCCCc---------
Confidence 9999999999999999999999999999986532 111 111222244555555443210
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCC-CCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY-KPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~d~~l~~~~l~~ 440 (635)
.....+.++...............+++++++|||||||.||||+++|++++...... ...+++ ..+++++...|+.|
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 150 -DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC-LRTNGADINSDVGFVGVPLFH 227 (542)
T ss_pred -ccccCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHH-HHhcCCCCCCceEEEecchHH
Confidence 011223333322222222234556789999999999999999999999976655443 335666 66889999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
.+++ ..++.++..|+++++.+.. . +++..+++.|+++++|+++.+|+++..|+..... .. ...++|.+++||++
T Consensus 228 ~~g~-~~~~~~l~~G~~~v~~~~~-~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~-~~~~lr~i~~gg~~ 301 (542)
T PRK07786 228 IAGI-GSMLPGLLLGAPTVIYPLG-A-FDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA--RP-RDLALRVLSWGAAP 301 (542)
T ss_pred HHHH-HHHHHHHHccCEEEEccCC-C-cCHHHHHHHHHHcCCeEEEehHHHHHHHHhCccc--Cc-cCcceEEEEECCCC
Confidence 8885 6788999999999997632 2 4899999999999999999999999999876432 12 22479999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++++++.+.++ +.++++.||+||++.+.+............++|+|++++.++|+|+++++++.|+.|||+|+|
T Consensus 302 ~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 378 (542)
T PRK07786 302 ASDTLLRQMAATFP--EAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRA- 378 (542)
T ss_pred CCHHHHHHHHHHcC--CCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEC-
Confidence 99999999999986 588999999999986654332222224567899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.+++||+++++.+.+.|. +|||+|||++++
T Consensus 379 -~~~~~gy~~~~~~~~~~f~---~~~~~TGDl~~~ 409 (542)
T PRK07786 379 -PTLMSGYWNNPEATAEAFA---GGWFHSGDLVRQ 409 (542)
T ss_pred -hhhhhhhcCCHHHHHHHhh---CCcccccceEEE
Confidence 8999999999999988763 789999999985
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=458.04 Aligned_cols=512 Identities=18% Similarity=0.179 Sum_probs=392.6
Q ss_pred CCCCCCCCCCccceeeecCC---CceEEEeccCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcccchhhhhhcccCC
Q 006688 44 SKPLNKSSSPPLKLIRQSGG---GGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALS 120 (635)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~ 120 (635)
-++++...-|+.++++.... .+..+|+....+.|...... ........ .. .......+||+++.+.++ .+.
T Consensus 92 ~~~~~h~~~p~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~~~d~~~~~~~~-~~~ 165 (642)
T COG1020 92 LGALEHQDLPGEQLVERLGRERSLSEPLFDVVFVLQNGPTAGL--KLPGLRVE--EL-GIETPAAKLDLALAVVEG-GLR 165 (642)
T ss_pred HHHhhccCCCHHHHHHHHhhhccCCCCceeeEEEecCcccccc--cccccccc--cc-cccCcccccceEEEEEeC-ceE
Confidence 34567777786666665442 22457777666666655433 11111111 11 112456899999999888 666
Q ss_pred cCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcch
Q 006688 121 SEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200 (635)
Q Consensus 121 ~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 200 (635)
+. +.|..++|++.++.++.++|..++..+..+|+..++++.. +...+. . .++ .. +.+-....
T Consensus 166 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~l-l~~~e~-~----~~~-~~--------~~~~~~~~ 227 (642)
T COG1020 166 LS---FDYARELFDAETIERELRHFLQLLAALADAPRTSLSALPL-LLPSER-E----VWN-AL--------AAPIPLRL 227 (642)
T ss_pred EE---EEeecccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCC-CCHHHH-h----hcc-cc--------ccCCCccc
Confidence 66 8999999999999999999999999999999977777642 222222 1 011 11 11111124
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.++..|.++ +...|+++|+++.+ ..+||+||+.+++++|+.|++.|++++++|+++++++.+++++++|++|+
T Consensus 228 ~i~~~f~~~-a~~~p~~~a~~~~~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilka 300 (642)
T COG1020 228 TIHLLFEEQ-AATTPDAVALVRGG------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKA 300 (642)
T ss_pred hHHHHHHHH-HHhCCCceeEecCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhc
Confidence 589999999 89999999999753 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++|+|+||.+|.+|+.+++++++++.+++......... .... +.++...
T Consensus 301 G~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~--------- 350 (642)
T COG1020 301 GAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV--------------------GLPG-LALDDAL--------- 350 (642)
T ss_pred CCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc--------------------cCCc-ccccccc---------
Confidence 999999999999999999999999999998844321000 0000 1111100
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
..............+++.+|++|||||||+||||+++|+++++ ...+....+.++..|+++..++++|
T Consensus 351 -----------~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~-~~~~~~~~~~~~~~d~~l~~~s~~f 418 (642)
T COG1020 351 -----------SEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALAN-LLNDAGARFGLDADDRVLALASLSF 418 (642)
T ss_pred -----------ccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHH-HHHHHHHhcCCCcccEEeecCCccc
Confidence 0000000112234568999999999999999999999999666 5566666799999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
|.+ ++++|.++..|+++++.+..... ++..+.+.+.++++|++..+|+++..++..............+|.+++|||.
T Consensus 419 D~~-~~~~f~~l~~G~~l~~~~~~~~~-~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~ 496 (642)
T COG1020 419 DAS-VFEIFGALLEGARLVLAPALLQV-DPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEA 496 (642)
T ss_pred chh-HHHHHHHHhCCCEEEecCccccC-CHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCC
Confidence 997 68999999999999999876665 9999999999999999999999999998763211122233459999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
++.++...+...... ...+.|.||+||+++.+.............++|+|++|++++|+|+.++++|.|+.|||+|.|
T Consensus 497 l~~~~~~~~~~~~~~-~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g- 574 (642)
T COG1020 497 LPLALVQRLLQLAAL-ARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAG- 574 (642)
T ss_pred CCHHHHHHHHHhccc-cceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECC-
Confidence 999999988877542 367999999999776554432111111156899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.++++||+++|+.|.+.|+.. .+|+|||++||
T Consensus 575 -~~~a~gy~~~p~lt~~~f~~~--~~y~tgD~~r~ 606 (642)
T COG1020 575 -LGLALGYLNRPDLTAERFIAL--RLYRTGDLARP 606 (642)
T ss_pred -cchhhhhcCChhhhHHHhhhc--cCccCCCeeeE
Confidence 999999999999999999864 59999999984
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=441.09 Aligned_cols=392 Identities=20% Similarity=0.251 Sum_probs=310.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++ |+++|+++.+ +.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 26 ~~~~~~~~~-a~--p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~ 96 (536)
T PRK10946 26 PLTDILTRH-AA--SDAIAVICGE------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL 96 (536)
T ss_pred cHHHHHHHh-hC--CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHc
Confidence 378999887 55 9999999643 67999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++++++..+..++..++++++++++++++..... ..... ...+....+.+..++..+...
T Consensus 97 G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~~~----~~~l~~~~~~~~~~~~~~~~~--------- 159 (536)
T PRK10946 97 GVAPVNALFSHQRSELNAYASQIEPALLIADRQHALF----SDDDF----LNTLVAEHSSLRVVLLLNDDG--------- 159 (536)
T ss_pred CeEEecCCccccHHHHHHHHhhcCCCEEEEecccccc----chHHH----HHHHHhhCCCceEEEEecCCC---------
Confidence 9988887777888899999999999999988653110 00011 111222223444444332211
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
...+.+.+.......+.....++++++++|||||||.||||+++|+++..+... ....++++++|++++.+|++|
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h 234 (536)
T PRK10946 160 ----EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRR-SVEICGFTPQTRYLCALPAAH 234 (536)
T ss_pred ----CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHH-HHHhcCCCCCceEEEecCccc
Confidence 111222222222222233456789999999999999999999999997766543 445788999999999999999
Q ss_pred ecchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 441 ~~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
.+++.. .++.+|..|+++++.+. +++..+++.++++++|++.++|.++..|++..........++++|.+++||+
T Consensus 235 ~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~ 310 (536)
T PRK10946 235 NYPMSSPGALGVFLAGGTVVLAPD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGA 310 (536)
T ss_pred cccchhhhHHHHhhcCcEEEECCC----CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCC
Confidence 887543 57888999999998764 4889999999999999999999999999875322123345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++++++.+.|.+.++ +++++.||+||+++..... .........++|+|+ |++.++|+|+++++++.|+.|||+|+
T Consensus 311 ~l~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~ 386 (536)
T PRK10946 311 RLSETLARRIPAELG---CQLQQVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTR 386 (536)
T ss_pred CCCHHHHHHHHHhcC---CeEEEeecccccceeeecC-CCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEe
Confidence 999999999998887 7899999999976443221 111123467899999 89999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| +.++.||+++++.+.+.|.. +|||+|||+|++
T Consensus 387 g--~~~~~GY~~~~~~t~~~~~~--d~~~~TGDl~~~ 419 (536)
T PRK10946 387 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLVSI 419 (536)
T ss_pred c--CccchhhcCCcccchhhccc--CCceecCceEEE
Confidence 9 99999999999998887643 789999999975
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=439.31 Aligned_cols=388 Identities=21% Similarity=0.324 Sum_probs=308.2
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|.++ ++++|+++|+++.+ +++||+||.++++++|..|++.|+++||+|+|+++|+++++++++||+++|
T Consensus 9 ~~~~~~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 81 (528)
T PRK07470 9 LAHFLRQA-ARRFPDRIALVWGD------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG 81 (528)
T ss_pred HHHHHHHH-HHHCCCceEEEECC------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 56788887 89999999999743 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++++++.... .... ..........++.++...
T Consensus 82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~---------- 138 (528)
T PRK07470 82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE---------HAAA----VRAASPDLTHVVAIGGAR---------- 138 (528)
T ss_pred eEEEecCccCCHHHHHHHHHhcCceEEEEcchhHH---------HHHH----HHhhCCcCceEEEeCCCc----------
Confidence 99999999999999999999999999999876421 1111 111112334445443211
Q ss_pred CCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhc-CCCCCcEEEEeCCcc
Q 006688 362 DGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF-DYKPSDVYWCTADCG 439 (635)
Q Consensus 362 ~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~~d~~l~~~~l~ 439 (635)
....+.++.... ..........++++++|+|||||||.||+|+++|+++...........+ ++.+.|+++..+|++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 216 (528)
T PRK07470 139 --AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLS 216 (528)
T ss_pred --ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccch
Confidence 011233332221 1112223456789999999999999999999999997544333232222 567889999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++ ..+ ..++.|+++++.+... ++++.+++.|+++++|++.++|++++.|.+... ....+++++|.+++||+
T Consensus 217 ~~~~~-~~~-~~~~~g~~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~ 290 (528)
T PRK07470 217 HGAGI-HQL-CQVARGAATVLLPSER--FDPAEVWALVERHRVTNLFTVPTILKMLVEHPA--VDRYDHSSLRYVIYAGA 290 (528)
T ss_pred hHHHH-HHH-HHHhcCceEEEecccC--cCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC--cCCCCCcceEEEEEcCC
Confidence 99885 344 4678888888876432 489999999999999999999999999987643 23456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC------CCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcce
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~G 593 (635)
++++++.+++.+.++ ..+++.||+||+++.+...... ......+++|+|++|++++|+|+++++++.|+.|
T Consensus 291 ~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~G 367 (528)
T PRK07470 291 PMYRADQKRALAKLG---KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETG 367 (528)
T ss_pred CCCHHHHHHHHHHhC---cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCce
Confidence 999999999988887 6799999999998755432110 0123457899999999999999999999999999
Q ss_pred EEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+| +.++.||+++++.+.+.|. +|||+|||+|++
T Consensus 368 el~i~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGDl~~~ 404 (528)
T PRK07470 368 EICVIG--PAVFAGYYNNPEANAKAFR---DGWFRTGDLGHL 404 (528)
T ss_pred EEEEeC--CccchhhcCCHHHHHhhhc---CCcEecceeEEE
Confidence 999999 9999999999999987763 789999999985
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=439.52 Aligned_cols=388 Identities=19% Similarity=0.254 Sum_probs=309.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++.+|+++|+++.+ +.+||+||.+++.++|..|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 22 ~l~~~l~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 22 TLPAMLARQ-AERYPDRPLLVFGG------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred CHHHHHHHH-HHHCCCCeEEEeCC------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 378999998 89999999999654 67999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++..+++++++++++++..... .+.. .......++.++.++.....
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~------- 154 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA---------ALEA----ADPGDLPLPAVWLLDAPASV------- 154 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHH---------HHHH----hcccccCcceEEEecCcccc-------
Confidence 999999999999999999999999999999765421 1111 11111234455555432200
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.........+... ...........++++++|+|||||||.||||+++|+++.... ......+++++++++++..|++|
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~-~~~~~~~~~~~~~~~l~~~pl~~ 232 (542)
T PRK06155 155 SVPAGWSTAPLPP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWG-RNSAEDLEIGADDVLYTTLPLFH 232 (542)
T ss_pred ccccccchhhhcc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHH-HHHHHhcCCCCCCEEEEecCHHH
Confidence 0000000000110 011112233467899999999999999999999999976554 33445688999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++ ..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|.+.... .....+++|.++.||
T Consensus 233 ~~~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~l~~~~~g~-- 303 (542)
T PRK06155 233 TNAL-NAFFQALLAGATYVLEPR----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR--ESDRAHRVRVALGPG-- 303 (542)
T ss_pred HHHH-HHHHHHHHcCceEEeeCC----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc--cccccCceEEEEEcC--
Confidence 9885 467899999999999764 4899999999999999999999999999876542 234567899887665
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++.+.+.+.++ ++++|.||+||++..+..... ..+++++|+|+++++++|+|++++++|.|+.|||+|+|+
T Consensus 304 ~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~ 377 (542)
T PRK06155 304 VPAALHAAFRERFG---VDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRAD 377 (542)
T ss_pred CCHHHHHHHHHHcC---CCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecC
Confidence 57889999999887 789999999999876544322 346678999999999999999999999999999999994
Q ss_pred CC-cchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WP-GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~-~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.+ +++.||+++++.+.+.| .+|||+|||+|++
T Consensus 378 ~~~~~~~GY~~~~~~~~~~~---~~~~~~TGD~~~~ 410 (542)
T PRK06155 378 EPFAFATGYFGMPEKTVEAW---RNLWFHTGDRVVR 410 (542)
T ss_pred CccccchhhcCCHHHHHHhh---cCCcEeccceEEE
Confidence 32 79999999999998876 3799999999985
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=442.33 Aligned_cols=386 Identities=18% Similarity=0.257 Sum_probs=304.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ ++.+|+++|+.+..+ .+.+||+||.++++++|..|++.|+++||+|+++++|+++++++++||+++
T Consensus 29 ~~~~~l~~~-a~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 103 (546)
T PLN02330 29 TLPDFVLQD-AELYADKVAFVEAVT----GKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAA 103 (546)
T ss_pred cHHHHHhhh-hhcCCCccEEEecCC----CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 467888888 899999999986421 268999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++..+.+++.+++++++++++|+++..... + .. .... ++.++...
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~----~~-----~~~~-~i~~~~~~--------- 155 (546)
T PLN02330 104 GGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGK---------V----KG-----LGLP-VIVLGEEK--------- 155 (546)
T ss_pred CcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhh---------H----hh-----cCCc-EEEecCCC---------
Confidence 9999999999999999999999999999998764321 1 00 0111 33332211
Q ss_pred CCCCcchhhhhcCcCCC---CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCC----CCcEEE
Q 006688 361 QDGRDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK----PSDVYW 433 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~----~~d~~l 433 (635)
......|.+.+..... ........++++++|+|||||||.||||+++|++++.+.... .+++. ..++++
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~ 231 (546)
T PLN02330 156 -IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS---LFSVGPEMIGQVVTL 231 (546)
T ss_pred -CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH---hhccCccccCceEEE
Confidence 0011223333322111 112233457899999999999999999999999977654321 23333 346788
Q ss_pred EeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCC--Cc
Q 006688 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK--SL 511 (635)
Q Consensus 434 ~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~--sL 511 (635)
...|++|.+++...++.+|..|+++++.+. +++..+++.++++++|++.++|+++..|++... ....++. ++
T Consensus 232 ~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~~~l 305 (546)
T PLN02330 232 GLIPFFHIYGITGICCATLRNKGKVVVMSR----FELRTFLNALITQEVSFAPIVPPIILNLVKNPI--VEEFDLSKLKL 305 (546)
T ss_pred EecChHHHHHHHHHHHHHhhcCCEEEEecc----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc--ccccccchhee
Confidence 999999998876677889999999999864 599999999999999999999999999987543 1223333 57
Q ss_pred eEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccC-CC--CCCCCCCCCCCCCCCCeEEEEc-CCCCcc
Q 006688 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PG--AWPQKPGSATFPFFGVQPVIVD-EKGVEI 587 (635)
Q Consensus 512 r~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~--~~~~~~~siG~pl~g~~v~IvD-~~g~~v 587 (635)
|.+++||++++++++++|.+.++ +.++++.||+||++.+..... .. ....+..++|+|++|++++|+| ++++++
T Consensus 306 ~~i~~~g~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~ 383 (546)
T PLN02330 306 QAIMTAAAPLAPELLTAFEAKFP--GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL 383 (546)
T ss_pred eeEEEcCCcCCHHHHHHHHHHcC--CCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC
Confidence 99999999999999999999986 488999999999876543321 11 1113456899999999999999 678999
Q ss_pred CCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 588 p~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|.|+.|||+|+| ++++.||+++++.+.+.+. .+|||+|||+|++
T Consensus 384 p~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~ 427 (546)
T PLN02330 384 PKNTPGELCVRS--QCVMQGYYNNKEETDRTID--EDGWLHTGDIGYI 427 (546)
T ss_pred CCCCceEEEEec--chhhhhhccCccchhhhcc--CCCceecccEEEE
Confidence 999999999999 9999999999998887653 4789999999984
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=433.46 Aligned_cols=399 Identities=21% Similarity=0.246 Sum_probs=314.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++++|+++|+++.+.+ +..+.+||+||.++++++|+.|.++|+++||+|+|+++|+.++++++|||+++
T Consensus 8 ~l~~~~~~~-a~~~p~~~a~~~~~~~-~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 8 HLRQMWDDL-ADVYGHKTALIFESSG-GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cHHHHHHHH-HHHCCCceEEEcccCC-CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 478999998 8999999999986533 44578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++++++... ..+.+... .....++.++..+.....
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~------- 146 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFY---------PMYRQIQQ---EDATPLRHICLTRVALPA------- 146 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchh---------HHHHHHHh---hccccCcEEEEecCCCcc-------
Confidence 99999999999999999999999999999987542 12222211 112344555544332100
Q ss_pred CCCCcchhhhhcCcCCC-CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
......+.+....... ........++++++|+|||||||.||||+++|++++.+. ........+.++++++..+|++
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~p~~ 224 (517)
T PRK08008 147 -DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAG-YYSAWQCALRDDDVYLTVMPAF 224 (517)
T ss_pred -cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHH-HHHhhhcCCCCCCeEEEecCcH
Confidence 0001122222221111 111223457899999999999999999999999976443 2222234678899999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..+....++.++..|+++++.++ +++..+++.|+++++|++.++|++++.++..... ......++|.++++ .
T Consensus 225 ~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~~-~ 297 (517)
T PRK08008 225 HIDCQCTAAMAAFSAGATFVLLEK----YSARAFWGQVCKYRATITECIPMMIRTLMVQPPS--ANDRQHCLREVMFY-L 297 (517)
T ss_pred HHHHHHHHHHHHHhcCcEEEEccc----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc--cccccccceeeEEe-c
Confidence 987777788899999999999875 4899999999999999999999999998876432 12234678888775 4
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++...|.+.++ .++++.||+||++..++..... ......++|+|++|++++|+|+++++++.|+.|||+|+|
T Consensus 298 ~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g 373 (517)
T PRK08008 298 NLSDQEKDAFEERFG---VRLLTSYGMTETIVGIIGDRPG-DKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKG 373 (517)
T ss_pred CCCHHHHHHHHHHhC---CeEEeeccccccccccccCCcc-ccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeC
Confidence 889999999998887 7899999999998655544332 234567899999999999999999999999999999998
Q ss_pred C-CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 S-WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~-~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+ .+++++||+++++.+.+.|. .+|||+|||+|++
T Consensus 374 ~~~~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~ 408 (517)
T PRK08008 374 VPGKTIFKEYYLDPKATAKVLE--ADGWLHTGDTGYV 408 (517)
T ss_pred CCCcchhhhHhCChHHHhhccc--CCCCeeccceEEE
Confidence 3 25899999999999988764 3789999999975
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=444.51 Aligned_cols=379 Identities=17% Similarity=0.162 Sum_probs=283.6
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
|-+.++|+++ ++++|+++|+++.+. +..+++||+||.++++++|+.|+++ ++||+|+|+++|++++++++|||++
T Consensus 2 ~~~~~~l~~~-~~~~~~~~a~~~~~~--~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 2 NELAAALSDA-MTASGRDLVVLDRES--GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred chHHHHHHHH-hcCCCCceEEeCCCC--CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 3467888888 899999999997542 3468999999999999999999988 8999999999999999999999999
Q ss_pred hCCeEEecCCC--------CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCc
Q 006688 280 IGAVHSVVFAG--------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (635)
Q Consensus 280 ~Ga~~vpld~~--------~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (635)
+|+++++ ++. ...+++.+++++++++++|+++... ..+... . .. +.+.+..
T Consensus 77 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~----~---~~----~~~~~~~ 135 (525)
T PRK05851 77 AGAAVSI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAV----D---SS----VTVHDLA 135 (525)
T ss_pred cCCCCcC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHh----h---cc----ccccccc
Confidence 9998754 432 2335666789999999999875431 011100 0 00 0010000
Q ss_pred cccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCC-CCc
Q 006688 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK-PSD 430 (635)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~~d 430 (635)
..... ....+.....++|++||+|||||||.||||+++|++++.+.. .....++++ ++|
T Consensus 136 ------------------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~~d 195 (525)
T PRK05851 136 ------------------TAAHT-NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLR-GLNARVGLDAATD 195 (525)
T ss_pred ------------------ccccc-cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHH-HHHHHhCCCCCCC
Confidence 00000 000011124678999999999999999999999999776553 444568888 899
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (635)
++++.+|++|++++ ..++.+|+.|+++++.+......++..+++.|+++++|++..+|.++..+.+.... ....++++
T Consensus 196 ~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~-~~~~~l~~ 273 (525)
T PRK05851 196 VGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR-VSDVDLGA 273 (525)
T ss_pred eEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc-ccCCCHHH
Confidence 99999999999996 56889999999999976321112678899999999999886666555555433211 12445789
Q ss_pred ceEEEecCCCCCHHHHHHHHHH---hCCCCcccccccccccccccccccCCCC-------------CCCCCCCCCCCCCC
Q 006688 511 LRVLGSVGEPINPSAWRWFFNV---VGDSRCPISDTWWQTETGGFMITPLPGA-------------WPQKPGSATFPFFG 574 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~---~~~~~~~l~n~YG~TE~~~~~~~~~~~~-------------~~~~~~siG~pl~g 574 (635)
||.+++||++++++++++|.+. +|....+++|.||+||++..++...+.. ...+.+++|+|++|
T Consensus 274 lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g 353 (525)
T PRK05851 274 LRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPG 353 (525)
T ss_pred hheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCC
Confidence 9999999999999999998875 3422246999999999986554332110 11244689999999
Q ss_pred CeEEEEcCCC-CccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 575 VQPVIVDEKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 575 ~~v~IvD~~g-~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|+|+++ .++|.|+.|||+|+| +++++|||++|+.+ .+|||+|||+|++
T Consensus 354 ~~v~i~d~~~~~~~~~g~~GEl~v~g--~~~~~GY~~~~~~~-------~~~~~~TGDl~~~ 406 (525)
T PRK05851 354 MEVRISPGDGAAGVAGREIGEIEIRG--ASMMSGYLGQAPID-------PDDWFPTGDLGYL 406 (525)
T ss_pred cEEEEECCCCCccCCCCCeEEEEEec--CchhhccccCCccC-------CCCceeccceEEE
Confidence 9999999776 468999999999999 99999999998632 3689999999974
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=432.45 Aligned_cols=394 Identities=21% Similarity=0.237 Sum_probs=314.8
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++.+|+++|+.+.+ +.+||+||.+++.++|+.|++.|+++|++|+++++|++++++++|||+++|
T Consensus 2 ~~~~~~~~-~~~~p~~~a~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 2 LHHLLEDA-AARLPDATALVHHD------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHH-HHHCCCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 56788887 89999999999754 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++..++++++++++|++..... .+.... ...+.+..++.++...... ..
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~ 136 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERLD---------LLHPAL----PGCHDLRTLILVGEPAHAS-----EG 136 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhh---------hhHhhh----hcccccceEEEecCccccc-----CC
Confidence 99999999999999999999999999999765321 111111 1113444555554322100 00
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
......|.+....... ........+++++|+|||||||.||||.++|++++.+... ....+++.++|++++..|++|+
T Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~~~ 214 (515)
T TIGR03098 137 GGESPSWPKLLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQS-VATYLENRPDDRLLAVLPLSFD 214 (515)
T ss_pred ccccccHHHhhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHH-HHHHhCCCcccEEEEECchhhH
Confidence 1112234444332211 1222345688999999999999999999999997765544 3346788999999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++ ..++.+|..|+++++.+. +++..+++.++++++|++.++|+++..|.+... ...+++++|.+++||+++
T Consensus 215 ~~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~l~~~~~~g~~l 286 (515)
T TIGR03098 215 YGF-NQLTTAFYVGATVVLHDY----LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW---PESAAPSLRYLTNSGGAM 286 (515)
T ss_pred hHH-HHHHHHHHcCCEEEEcCC----CCHHHHHHHHHHcCCceEecChHHHHHHHhccc---CCCCccceEEEEecCCcC
Confidence 986 468899999999999864 489999999999999999999999999987532 234678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCC
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~ 601 (635)
++++++.+.+.++ +..+++.||+||++....... .....+++++|+|++|++++|+|+++++++.|+.|||+++|
T Consensus 287 ~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g-- 361 (515)
T TIGR03098 287 PRATLSRLRSFLP--NARLFLMYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRG-- 361 (515)
T ss_pred CHHHHHHHHHHCC--CCeEeeeeccccccceEeccc-ccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcC--
Confidence 9999999999986 478999999999875443322 22234678999999999999999999999999999999999
Q ss_pred CcchhhhcCChhHHHHhhcCC---------CCceEEcCCeEec
Q 006688 602 PGAFRTLYGDHERYETTYFKP---------FPGYYFTGDGCSR 635 (635)
Q Consensus 602 ~~v~~GY~~~~e~t~~~~~~~---------~~g~yrTGDlgr~ 635 (635)
+.++.||+++++.+.+.|... .++||+|||+|++
T Consensus 362 ~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~ 404 (515)
T TIGR03098 362 ALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRR 404 (515)
T ss_pred chhhccccCCchhhhhhhhccCCccccccccccceeccceEEE
Confidence 899999999998887765421 1348999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=391.54 Aligned_cols=394 Identities=20% Similarity=0.258 Sum_probs=325.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ |+++||++||++.+ +.+||+||+++++++|..|+++|+++||+|.+-++|..+++++++|++|+
T Consensus 29 ~l~d~L~~~-A~~~pdriAv~d~~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrl 101 (542)
T COG1021 29 TLTDILTDH-AARYPDRIAVIDGE------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRL 101 (542)
T ss_pred cHHHHHHHH-HhhcCCceEEecCc------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHc
Confidence 367899999 99999999999654 77999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++.|.-=|.....+|.+..+.+.++.+|.+.... ..+...+..+. ....+.++++++.++....
T Consensus 102 Gv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~----gFd~~~~ar~~----~a~~~tlr~v~v~ge~~~~------- 166 (542)
T COG1021 102 GVAPVLALPSHRASELGAFASQIEAALLIVARQHS----GFDYRPFAREL----VAKHPTLRHVIVAGEAEHP------- 166 (542)
T ss_pred CcchhhccchhhHHHHHHHHHhhcchheeechhhc----ccCcHHHHHHH----HhhCCcceEEEEccCCCCc-------
Confidence 99999888999999999999999999999876542 12223333333 3334788888877544200
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
...+..+........+..+.+++++||..-+.||||.||-+..+|..+..+... ..+.+++++.+|.++.+|..|
T Consensus 167 ----~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~a-SaEiC~~~~~tvyL~~LP~AH 241 (542)
T COG1021 167 ----SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRA-SAEICGFDQQTVYLCALPAAH 241 (542)
T ss_pred ----chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeee-hhhhhCcCccceEEEeccccc
Confidence 011111222222333455677889999999999999999999999987665544 445799999999999999999
Q ss_pred ecchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 441 ~~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
.+.+.. .+++.+..|+++|+.++ ++|+....+|++|+||+..++|.+...|++..+. ...+++|||.+-+||.
T Consensus 242 NfplssPG~LGv~~agG~VVla~~----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~--~~~~LsSLrllQVGGa 315 (542)
T COG1021 242 NFPLSSPGALGVFLAGGTVVLAPD----PSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--ERADLSSLRLLQVGGA 315 (542)
T ss_pred CCCCCCcchhheeeeccEEEECCC----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc--ccCCchheeEEeecCc
Confidence 765432 57889999999999876 4999999999999999999999999999988664 5778999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
.+++++.+++...+| +.+-+.+||.|--+. ....++..+.-..+-|+|+ |.-+++|+|++|++|++|++|||..+
T Consensus 316 rl~~~~Arrv~~~lg---C~LQQVFGMAEGLvn-yTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltR 391 (542)
T COG1021 316 RLSATLARRVPAVLG---CQLQQVFGMAEGLVN-YTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTR 391 (542)
T ss_pred ccCHHHHhhchhhhC---chHHHHhhhhhhhhc-ccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeec
Confidence 999999999999998 899999999995332 2222222223345789998 67889999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| |-.++|||+.|+.++..|.. +|+|+|||++++
T Consensus 392 G--PYTirGYyrap~HNa~aF~a--~GFYrsGD~V~~ 424 (542)
T COG1021 392 G--PYTIRGYYRAPEHNARAFDA--DGFYRSGDLVRR 424 (542)
T ss_pred C--CeeeeeeccCchhhhhccCc--CCceecCceeEe
Confidence 9 88999999999999999875 999999999874
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=455.82 Aligned_cols=386 Identities=19% Similarity=0.247 Sum_probs=294.2
Q ss_pred HHHHHhhhhhccCCC-ceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.++|+++ ++++|+ ++|+.+. ..+.+||+||.++++++|+.|++. +++||+|+|+++|++++++++|||+++
T Consensus 206 ~~~~l~~~-~~~~p~~~~a~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~ 278 (718)
T PRK08043 206 LYEALLSA-QYRYGAGKPCIEDV-----NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLR 278 (718)
T ss_pred HHHHHHHH-HHHhCCCCcceEcC-----CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHc
Confidence 67888888 899998 6888632 236799999999999999999987 599999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++++++++++++++|++.......+..... .....+. ++.+++... ....
T Consensus 279 G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~-----------~~~~~~~-~i~~~~~~~----~~~~ 342 (718)
T PRK08043 279 RRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLP-----------EQLTQVR-WVYLEDLKD----DVTT 342 (718)
T ss_pred CCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChh-----------hhhcccc-EEEhhhhhh----hcch
Confidence 99999999999999999999999999999976542211000000 0001111 222221100 0000
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.. ......+... .........++|+++|+|||||||.||||+++|++++.+. ......++++++|++++.+|++|
T Consensus 343 ~~-~~~~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~Pl~h 417 (718)
T PRK08043 343 AD-KLWIFAHLLM---PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANV-EQIKTIADFTPNDRFMSALPLFH 417 (718)
T ss_pred hH-HHHHHHHHhC---CccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHH-HHHHHhhCCCccCeEEEcCcchh
Confidence 00 0000000000 0011123467999999999999999999999999976654 44445678999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
.+++...++.+|..|+++++.+.. +++..+++.++++++|+++.+|+++..+.+.. ...++++||.+++||++
T Consensus 418 ~~g~~~~~~~~l~~G~~vv~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----~~~~~~~lr~i~~gg~~ 490 (718)
T PRK08043 418 SFGLTVGLFTPLLTGAEVFLYPSP---LHYRIVPELVYDRNCTVLFGTSTFLGNYARFA----NPYDFARLRYVVAGAEK 490 (718)
T ss_pred hhhhHHHHHHHHHcCCEEEEeCCc---ccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc----CcccccceEEEEEeCcc
Confidence 999877788999999999998642 36778899999999999999999998886642 23467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++.+.|.+.++ +++++.||+||++..++...+. ..+++++|+|+||++++|+|+++. ++.|||+|+|
T Consensus 491 l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~~~~----~~~Gel~v~g- 560 (718)
T PRK08043 491 LQESTKQLWQDKFG---LRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSVPGI----EQGGRLQLKG- 560 (718)
T ss_pred CCHHHHHHHHHHcC---CCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecCCCC----CCceEEEEec-
Confidence 99999999999887 7899999999998765543222 246789999999999999997753 4569999999
Q ss_pred CCcchhhhcC--ChhHH-------HHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYG--DHERY-------ETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~--~~e~t-------~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++.|||+ +|+.+ .+.++ .+|||+|||+|++
T Consensus 561 -~~v~~GY~~~e~~~~~~~~~~~~~~~~~--~~gw~~TGDlg~~ 601 (718)
T PRK08043 561 -PNIMNGYLRVEKPGVLEVPTAENARGEM--ERGWYDTGDIVRF 601 (718)
T ss_pred -CCccccccCCCCcccccccccccccccc--cCCeEecCCEEEE
Confidence 999999999 45532 11122 3689999999985
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=477.95 Aligned_cols=398 Identities=23% Similarity=0.232 Sum_probs=312.5
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++++++ ++++|+++|+++.. ++++||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++
T Consensus 616 ~l~~~~~~~-a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~-~~~g~~V~i~~~n~~~~~~~~la~~~~ 688 (1146)
T PRK08633 616 PLAEAWIDT-AKRNWSRLAVADST-----GGELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLA 688 (1146)
T ss_pred CHHHHHHHH-HHhcCCCcEEEcCC-----CCcCcHHHHHHHHHHHHHHHHHh-CCCCCeEEEECCCchHHHHHHHHHHHc
Confidence 367888888 89999999998532 26899999999999999999874 899999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|..+.+++.+++++++++++++++..... +.+.. .....+....++..++... ..
T Consensus 689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~------~~ 751 (1146)
T PRK08633 689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEK---------LKNKG--FDLELPENVKVIYLEDLKA------KI 751 (1146)
T ss_pred CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHH---------HhccC--CchhcccCceEEEeehhcc------cc
Confidence 9999999999999999999999999999987653211 10000 0000112233443332110 00
Q ss_pred CCCCcchhhhhcCcCC-C-----CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEE
Q 006688 361 QDGRDIWWQDVVPKYP-T-----KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 434 (635)
.....+.+...... + ........++|+++|+|||||||.||||+++|++++.+. ......++++++|+++.
T Consensus 752 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~-~~~~~~~~~~~~d~~l~ 828 (1146)
T PRK08633 752 --SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNI-EQISDVFNLRNDDVILS 828 (1146)
T ss_pred --chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHH-HHHHHhcCCCCCCEEEE
Confidence 00001111111000 0 000134568999999999999999999999999977655 44455788999999999
Q ss_pred eCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEE
Q 006688 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (635)
Q Consensus 435 ~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v 514 (635)
.+|+.|..++...++.+++.|+++++.++. +++..+++.++++++|++.++|++++.+.+... ..+.+++++|.+
T Consensus 829 ~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~ 903 (1146)
T PRK08633 829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDP---TDALGIAKLVAKHRATILLGTPTFLRLYLRNKK--LHPLMFASLRLV 903 (1146)
T ss_pred cCcHHHHHhHHHHHHHHHHCCCEEEEeCCC---CCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc--cCcccCCCeeeE
Confidence 999999999877788999999999997642 489999999999999999999999999987543 245577899999
Q ss_pred EecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC--------CCCCCCCCCCCCCCCeEEEEc-CCCC
Q 006688 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--------WPQKPGSATFPFFGVQPVIVD-EKGV 585 (635)
Q Consensus 515 ~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--------~~~~~~siG~pl~g~~v~IvD-~~g~ 585 (635)
++|||++++++.+++++.++ .++++.||+||++..++...+.. ...+++++|+|+||++++|+| ++++
T Consensus 904 ~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~ 980 (1146)
T PRK08633 904 VAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFE 980 (1146)
T ss_pred EEcCCcCCHHHHHHHHHHhC---CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCc
Confidence 99999999999999999987 78999999999987654432211 123567899999999999999 5789
Q ss_pred ccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 586 EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 586 ~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
++|+|+.|||+|+| ++++.||+++|+.+.+.+.+ +.+|||+|||+|++
T Consensus 981 ~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633 981 ELPPGEDGLILIGG--PQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred cCCCCCceEEEEcC--CCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence 99999999999999 99999999999999887643 23489999999985
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=437.28 Aligned_cols=400 Identities=19% Similarity=0.265 Sum_probs=304.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.+.++|+++ ++++|+++|+++.+ +.+||.||.++++++|+.|.+. |+++||+|+|+++|++++++++|||++
T Consensus 25 ~~~~~l~~~-~~~~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 25 SVVEVFERS-CKKFADRPAFSNLG------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred cHHHHHHHH-HHhCCCCeeEecCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 477889988 89999999998543 6899999999999999999985 999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEec--CCccc----
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE--NQSAM---- 353 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~--~~~~~---- 353 (635)
+|++++|+++.++.+++.+++++++++++|+++..... ....... ..+..++... +..+.
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 163 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKL---------VQEVLPD-----TGIEYLIEAKMGDLLPAAKGW 163 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccchH---------HHHhhhc-----cCceEEEeechhhccccccch
Confidence 99999999999999999999999999999987653211 1111000 0111111100 00000
Q ss_pred ---------cccccccCCCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh
Q 006688 354 ---------TRENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (635)
Q Consensus 354 ---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 423 (635)
..............|.+...... ..........+++++|+|||||||.||||+++|+++..+...... .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~-~ 242 (562)
T PRK12492 164 LVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRA-C 242 (562)
T ss_pred hcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHH-H
Confidence 00000000001122333322111 111123456789999999999999999999999997655433322 2
Q ss_pred cC---------CCC-CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHH
Q 006688 424 FD---------YKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR 493 (635)
Q Consensus 424 ~~---------~~~-~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~ 493 (635)
+. +.. .++++...|++|.+++...++..+..|+++++.... +++..+++.|+++++|++..+|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~ 319 (562)
T PRK12492 243 LSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNP---RDIPGFIKELGKWRFSALLGLNTLFV 319 (562)
T ss_pred HhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCC---cCHHHHHHHHHHhCCceeeCcHHHHH
Confidence 22 233 357788999999998766777778889988776532 38899999999999999999999999
Q ss_pred HHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCC
Q 006688 494 SLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573 (635)
Q Consensus 494 ~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~ 573 (635)
.|++... ....+++++|.+++||+++++++.++|.+.++ +++++.||+||++.+++..... ...+++++|+|++
T Consensus 320 ~l~~~~~--~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~ 393 (562)
T PRK12492 320 ALMDHPG--FKDLDFSALKLTNSGGTALVKATAERWEQLTG---CTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVP 393 (562)
T ss_pred HHHhCcC--cccccccceeEEEeccccCCHHHHHHHHHHhC---CceeeccCccccCceeeecCCc-ccccCCccceecC
Confidence 9987653 23456789999999999999999999998876 7899999999998765543322 2345678999999
Q ss_pred CCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 574 g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++|+|+++++++.|+.|||+|+| +.+++||+++|+.+.+.|. .+|||+|||+|++
T Consensus 394 ~~~v~ivd~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~ 451 (562)
T PRK12492 394 GTALKVIDDDGNELPLGERGELCIKG--PQVMKGYWQQPEATAEALD--AEGWFKTGDIAVI 451 (562)
T ss_pred CCEEEEECCCCCCCCCCCceEEEEeC--CccccccccCchhhhhccc--CCCceecCcEEEE
Confidence 99999999999999999999999999 8999999999999988764 3789999999985
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=436.75 Aligned_cols=405 Identities=17% Similarity=0.171 Sum_probs=309.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.++|+++ ++.+|+++|+++.+ +..+.+||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+++
T Consensus 12 ~~~~l~~~-a~~~~~~~a~~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~ 87 (576)
T PRK05620 12 LTRILEYG-STVHGDTTVTTWGG---AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM 87 (576)
T ss_pred HHHHHHHH-HHhCCCceEEEEcC---CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence 67889998 89999999999754 346899999999999999999986 79999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.++++.++++++|+++... +.+.+... ..+..+.++.++............
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~ 154 (576)
T PRK05620 88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLA---------EQLGEILK----ECPCVRAVVFIGPSDADSAAAHMP 154 (576)
T ss_pred CCEEeecccccCHHHHHHHHhccCCcEEEEChhhH---------HHHHHHHh----hCccccEEEEecCcccccchhccc
Confidence 99999999999999999999999999999986532 12222211 123445555544321000000000
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH-HHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~d~~l~~~~l~ 439 (635)
.......|.++.+............++++++++|||||||.||||+++|+++..+.... ....+++.++|++++.+|++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 234 (576)
T PRK05620 155 EGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIY 234 (576)
T ss_pred cccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChH
Confidence 01112345555543222222334567899999999999999999999999965443221 12347788999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ ..++.++..|+++++.+.. +++..+++.|+++++|+++.+|+++..|+..... ...+..+||.+++||+
T Consensus 235 h~~g~-~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~gG~ 308 (576)
T PRK05620 235 HVLSW-GVPLAAFMSGTPLVFPGPD---LSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLK--NPPERMSLQEIYVGGS 308 (576)
T ss_pred Hhhhh-HHHHHHHhcCceEEecCCC---CCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhc--cCcccCceeEEEEcCC
Confidence 99985 4678899999999987542 4899999999999999999999999988765321 2223468999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCC------CCCCCCCCCCCCCCeEEEEcCCCCccC--CCc
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW------PQKPGSATFPFFGVQPVIVDEKGVEIE--GEC 591 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~siG~pl~g~~v~IvD~~g~~vp--~g~ 591 (635)
+++++++++|.+.++ +++++.||+||++..++...+... .....++|++.++++++|+|+ +++++ .+.
T Consensus 309 ~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~ 384 (576)
T PRK05620 309 AVPPILIKAWEERYG---VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRN 384 (576)
T ss_pred CCCHHHHHHHHHHhC---CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCC
Confidence 999999999998887 789999999999875543322110 012347899999999999998 77775 477
Q ss_pred ceEEEEecCCCcchhhhcCChhHH----HHhhcC----------CCCceEEcCCeEec
Q 006688 592 SGYLCIKSSWPGAFRTLYGDHERY----ETTYFK----------PFPGYYFTGDGCSR 635 (635)
Q Consensus 592 ~GEL~i~g~~~~v~~GY~~~~e~t----~~~~~~----------~~~g~yrTGDlgr~ 635 (635)
.|||+|+| +.++.||+++++.+ ...|.. ..+|||+|||+|++
T Consensus 385 ~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~ 440 (576)
T PRK05620 385 EGEIQVRG--NWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSV 440 (576)
T ss_pred ceEEEEEc--CcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEE
Confidence 99999999 88999999999877 222210 13689999999985
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=431.50 Aligned_cols=379 Identities=18% Similarity=0.221 Sum_probs=307.2
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+.|.++ ++.+|+++|+.+.+ +.+||+||.+++.++|..|++.|+++|++|+|+++|+.++++++|||+++|
T Consensus 2 ~~~~l~~~-a~~~p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 74 (502)
T TIGR01734 2 LIEAIQAF-AETYPQTIAYRYQG------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG 74 (502)
T ss_pred HHHHHHHH-HHHCCCceEEEcCC------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence 45778887 88999999998654 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++..+++..+++.++++....... .... ++.++...
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------~~~~-~~~~~~~~---------- 123 (502)
T TIGR01734 75 HAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDA--------------------VGTQ-IITLSALE---------- 123 (502)
T ss_pred CEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccc--------------------cCCc-eEEchHhh----------
Confidence 9999999999999999999999999999987643210 0011 12111100
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
+...............++++++|+|||||||.||+|+++|+++..+.. +....+++..+++++...|++|.
T Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~ 194 (502)
T TIGR01734 124 --------QAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTN-WMLADFPLSEGKQFLNQAPFSFD 194 (502)
T ss_pred --------hhhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHH-HHHHhCCCCCCceEEeecCceec
Confidence 000000001111234678999999999999999999999999766554 44446888999999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++ ..++.++..|+++++.+.... .++..+++.++++++|.+..+|+++..++.... .....++++|.++++|+++
T Consensus 195 ~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~--~~~~~~~~l~~~~~~G~~~ 270 (502)
T TIGR01734 195 LSV-MDLYPCLASGGTLHCLDKDIT-NNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN--FNQENYPHLTHFLFCGEEL 270 (502)
T ss_pred hhH-HHHHHHHHCCCEEEEcCHHHh-cCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc--cccccCCcccEEEEcCCcC
Confidence 885 678899999999999875333 388999999999999999999999988776532 2345678999999999999
Q ss_pred CHHHHHHHHHHhCCCCccccccccccccccccccc-CCC--CCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP-LPG--AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~-~~~--~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++++.+++.+.++ +.++++.||+||+++.++.. ... .......++|+|++|++++|+|+++++++.|+.|||+|+
T Consensus 271 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~ 348 (502)
T TIGR01734 271 PVKTAKALLERFP--KATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIV 348 (502)
T ss_pred CHHHHHHHHHHCC--CcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEc
Confidence 9999999999987 58899999999987644322 111 112334579999999999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCC-CCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKP-FPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~-~~g~yrTGDlgr~ 635 (635)
| +.++.||+++++.+.+.|+.. ..+||+|||+|++
T Consensus 349 g--~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~ 384 (502)
T TIGR01734 349 G--PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI 384 (502)
T ss_pred c--ccccccccCCcccchHhheeCCCcEEEECCCEEEE
Confidence 9 899999999999998887542 2359999999985
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=428.92 Aligned_cols=366 Identities=20% Similarity=0.281 Sum_probs=294.7
Q ss_pred hhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEec
Q 006688 208 RNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (635)
Q Consensus 208 ~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpl 287 (635)
.+ ++.+|+++|+.+.. .++.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 3 ~~-a~~~p~~~a~~~~~----~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~ 77 (488)
T PRK09088 3 FH-ARLQPQRLAAVDLA----LGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL 77 (488)
T ss_pred hh-hhhCCCceEEEecC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEee
Confidence 45 67899999998632 23789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcch
Q 006688 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIW 367 (635)
Q Consensus 288 d~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 367 (635)
++.++.+++.+++++++++++|+++....... ..+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------------------~~~~~~~------------------ 116 (488)
T PRK09088 78 NWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------------------DVEDLAA------------------ 116 (488)
T ss_pred CccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------------------cccchhh------------------
Confidence 99999999999999999999998765421100 0000000
Q ss_pred hhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHH
Q 006688 368 WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447 (635)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~ 447 (635)
+.+...... ........++++++++|||||||.||+|.++|++++... ........+.++|++++.+|++|..++...
T Consensus 117 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~ 194 (488)
T PRK09088 117 FIASADALE-PADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTA-HNFGVLGRVDAHSSFLCDAPMFHIIGLITS 194 (488)
T ss_pred hhhhccccc-cccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHH-HHHHHhhCCCCCcEEEEecchHHHHHHHHH
Confidence 000000000 011122356889999999999999999999999976544 334445678889999999999999998777
Q ss_pred hHHHhhcCcEEEEecCCCCCCChhHHHHHHH--HcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHH
Q 006688 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVD--KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (635)
Q Consensus 448 i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~--~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l 525 (635)
++.++..|+++++.+. +++..++..+. ++++|+++.+|++++.+.+... .....+++||.+++||++++.+.
T Consensus 195 ~~~~l~~g~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~gG~~~~~~~ 268 (488)
T PRK09088 195 VRPVLAVGGSILVSNG----FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--FDAAALRHLTALFTGGAPHAAED 268 (488)
T ss_pred HHHHHhcCCEEEEcCC----CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--cCccccccceEEEecCCCCCHHH
Confidence 8889999999998764 48888888886 4899999999999999987643 23445789999999999999998
Q ss_pred HHHHHHHhCCCCcccccccccccccccccccC-CCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcc
Q 006688 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604 (635)
Q Consensus 526 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v 604 (635)
++.+.+. + .++++.||+||++....... ......+++++|+|+++++++|+|+++++++.|++|||+|+| +++
T Consensus 269 ~~~~~~~-g---~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~ 342 (488)
T PRK09088 269 ILGWLDD-G---IPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRG--PNL 342 (488)
T ss_pred HHHHHHh-C---CceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEEC--Ccc
Confidence 8887754 4 78999999999986543221 111123567899999999999999999999999999999999 899
Q ss_pred hhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 605 FRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 605 ~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.||+++++.+.+.+. .+|||+|||+|++
T Consensus 343 ~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~ 371 (488)
T PRK09088 343 SPGYWRRPQATARAFT--GDGWFRTGDIARR 371 (488)
T ss_pred chhhcCChhhhhhhhc--CCCCeeecceEEE
Confidence 9999999999887764 3799999999984
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=432.21 Aligned_cols=396 Identities=19% Similarity=0.203 Sum_probs=305.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+.+ ++.+|+++++.+.. + +..+.+||.||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 12 ~~~~l~~~-~~~~~~~~~~~~~~-~-~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G 88 (539)
T PRK07008 12 ISSLIAHA-ARHAGDTEIVSRRV-E-GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSG 88 (539)
T ss_pred HHHHHHHH-HhhCCCceEEEeec-c-CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 67889887 88889988887632 1 224679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.++++++++++++++.... ..+.+. ......+..++.+.+... ....
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~ 150 (539)
T PRK07008 89 AVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFL---------PLVDAL----APQCPNVKGWVAMTDAAH-----LPAG 150 (539)
T ss_pred cEEeecccccCHHHHHHHHhccCCcEEEEcchhH---------HHHHHH----HhhCCCceEEEEEccCCc-----cccC
Confidence 9999999999999999999999999999886532 122221 122234455554433210 0000
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHH-HHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT-TFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
......++++..............++++++++|||||||.||||+++|++++.+... .....+++.++|+++...|++|
T Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 230 (539)
T PRK07008 151 STPLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFH 230 (539)
T ss_pred CcccccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHH
Confidence 011233444433222222223456789999999999999999999999997643322 2223577889999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
.+++ ..++.++..|+++++.+.. +++..+++.+++++||++..+|+++..|++.... ...++++||.++++|++
T Consensus 231 ~~~~-~~~~~~l~~G~~~~~~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~~G~~ 304 (539)
T PRK07008 231 VNAW-GLPYSAPLTGAKLVLPGPD---LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE--AGLRFSTLRRTVIGGSA 304 (539)
T ss_pred hhhH-HHHHHHHhcCceEEEecCC---cCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc--cCCCcccceEEEEcCCC
Confidence 7764 3457789999999997542 4899999999999999999999999999876542 34567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCC---------CCCCCCCCCCCCCCCCeEEEEcCCCCccCCC-
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---------AWPQKPGSATFPFFGVQPVIVDEKGVEIEGE- 590 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g- 590 (635)
++++++++|.+.++ .++++.||+||++..++..... .......++|+|+||++++|+|+++++++.+
T Consensus 305 l~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~ 381 (539)
T PRK07008 305 CPPAMIRTFEDEYG---VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDG 381 (539)
T ss_pred CCHHHHHHHHHHhC---CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCC
Confidence 99999999999887 7899999999998654322110 0011246799999999999999999999853
Q ss_pred -cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 591 -CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 591 -~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.|||+++| +.++.||+++++. . +. +|||+|||+|++
T Consensus 382 ~~~Gei~v~g--~~~~~gy~~~~~~---~-~~--~g~~~TGD~~~~ 419 (539)
T PRK07008 382 KAFGDLQVRG--PWVIDRYFRGDAS---P-LV--DGWFPTGDVATI 419 (539)
T ss_pred CcceEEEEeC--CccchhhcCChhh---h-hc--CCCcccCceEEE
Confidence 579999999 8899999999842 2 22 689999999975
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=431.60 Aligned_cols=373 Identities=21% Similarity=0.238 Sum_probs=292.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGV-KKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv-~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
++.++|.++ + .|+++|+++.+ ..+||+||.++++++|..|.+.|+ ++||+|+|+++|++++++++|||++
T Consensus 4 ~~~~~l~~~-~--~p~~~Al~~~~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~ 74 (540)
T PRK13388 4 TIAQLLRDR-A--GDDTIAVRYGD------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAAL 74 (540)
T ss_pred hHHHHHHhh-c--cCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHh
Confidence 366777765 3 69999999754 689999999999999999999999 8999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++|++|.++.+++..++++++++++|+++.... .+.+ . ..+.++ ++.++..
T Consensus 75 ~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~----~--~~~~~~-~i~~~~~--------- 129 (540)
T PRK13388 75 GGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRP---------LLDG----L--DLPGVR-VLDVDTP--------- 129 (540)
T ss_pred CCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhH---------HHHh----h--cccCce-EEEccch---------
Confidence 9999999999999999999999999999999765421 1111 0 012222 2322211
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
.+.+.+.......+.....++++++|+|||||||.||||+++|++++.+. ......++++++|+++..+|++
T Consensus 130 -------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~ 201 (540)
T PRK13388 130 -------AYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAG-RALTERFGLTRDDVCYVSMPLF 201 (540)
T ss_pred -------hhhhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHH-HHHHHHhCCCCCCEEEEeeCch
Confidence 11122221111112223567999999999999999999999999976544 4445578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++...++.+|..|+++++.+. +++..+++.|+++++|++..+|+.+..++..... ......++|.+ + |+
T Consensus 202 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~~~l~~~-~-G~ 273 (540)
T PRK13388 202 HSNAVMAGWAPAVASGAAVALPAK----FSASGFLDDVRRYGATYFNYVGKPLAYILATPER--PDDADNPLRVA-F-GN 273 (540)
T ss_pred hhcchHHHHHHHHHcCcEEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--ccccccceEEE-E-CC
Confidence 998876666678999999998754 4899999999999999999999999999876431 11223466643 3 66
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEE-----------EEcCCCCccC
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV-----------IVDEKGVEIE 588 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~-----------IvD~~g~~vp 588 (635)
+++++....|.+.++ .+++|.||+||++.+++.. . ...++++|+|++|++++ ++|++|++++
T Consensus 274 ~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~-~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~ 346 (540)
T PRK13388 274 EASPRDIAEFSRRFG---CQVEDGYGSSEGAVIVVRE-P---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLN 346 (540)
T ss_pred CCCHHHHHHHHHHhC---CceecccccccccceeecC-C---CCCCCCCCCCCCCcEEEcCCCCccccceeccCcccccc
Confidence 778888899988886 7899999999998655432 1 13567899999998763 5667777764
Q ss_pred -CCcceEEEEe-cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 589 -GECSGYLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 589 -~g~~GEL~i~-g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.+..|||+|+ | ++++.||+++|+.+.+.|. +|||+|||+|++
T Consensus 347 ~~~~~GEl~v~~g--~~~~~gY~~~~~~t~~~~~---~g~~~TGD~~~~ 390 (540)
T PRK13388 347 ADEAIGELVNTAG--AGFFEGYYNNPEATAERMR---HGMYWSGDLAYR 390 (540)
T ss_pred CCCcceEEEEecC--CcccccccCChHHHHHHhh---cCceeccceEEE
Confidence 5779999998 9 9999999999999988873 789999999985
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=429.47 Aligned_cols=387 Identities=20% Similarity=0.209 Sum_probs=310.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ ++++|+++|+++.+ +.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 13 ~~~~~~~~~-~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~ 85 (524)
T PRK06188 13 TYGHLLVSA-LKRYPDRPALVLGD------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLA 85 (524)
T ss_pred cHHHHHHHH-HHHCCCCeEEEECC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 377889888 79999999999754 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|..+.+++..++++++++++++++... ...... .......+.+++.+.....
T Consensus 86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~-------- 145 (524)
T PRK06188 86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF--------VERALA----LLARVPSLKHVLTLGPVPD-------- 145 (524)
T ss_pred CCEEEecccCCCHHHHHHHHHhcCceEEEEecchh--------hHHHHH----HhhhcCCceEEEEeCCccc--------
Confidence 99999999999999999999999999999986521 011111 1111233444444432210
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
....+... .............++++++|+|||||||.||+|.++|.+++.+. ......+++..+|+++...|++|
T Consensus 146 ---~~~~~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~-~~~~~~~~~~~~~~~l~~~pl~~ 220 (524)
T PRK06188 146 ---GVDLLAAA-AKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMA-QIQLAEWEWPADPRFLMCTPLSH 220 (524)
T ss_pred ---hhhHHHhh-hccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHH-HHHHhhcCCCcCcEEEEecCchh
Confidence 00001111 11011111112345679999999999999999999999976655 44445688999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++ .++.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ...+++++|.+++||++
T Consensus 221 ~~g~--~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gg~~ 292 (524)
T PRK06188 221 AGGA--FFLPTLLRGGTVIVLAK----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL--RTRDLSSLETVYYGASP 292 (524)
T ss_pred hhhH--HHHHHHHcCCEEEEcCC----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc--cCCCCcceeEEEEcCCC
Confidence 8874 46788999999999875 4899999999999999999999999999887542 34568899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCC----CCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG----AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
+++++.+.+.+.++ ..+++.||+||++..+...... .......++|+|++|++++|+|+++++++.|+.|||+
T Consensus 293 ~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~ 369 (524)
T PRK06188 293 MSPVRLAEAIERFG---PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEIC 369 (524)
T ss_pred CCHHHHHHHHHHhC---chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEE
Confidence 99999999988887 6799999999997554432211 1234567899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+| +.++.||+++++.+...| .+|||+|||+|++
T Consensus 370 v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~ 403 (524)
T PRK06188 370 VRG--PLVMDGYWNRPEETAEAF---RDGWLHTGDVARE 403 (524)
T ss_pred EEC--cchhhhhcCChHHhhhhh---cCCceeecceEEE
Confidence 999 899999999999988776 3789999999985
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=431.26 Aligned_cols=400 Identities=22% Similarity=0.279 Sum_probs=307.7
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.++.++|+++ ++.+|+++|+++.+ +.+||.||.++++++|..|.+.|+++||+|+++++|++++++++|||++
T Consensus 21 ~~~~~~~~~~-~~~~p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~ 93 (541)
T TIGR03205 21 GTLPDLLSKA-AADYGPRPALEFRD------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALK 93 (541)
T ss_pred CCHHHHHHHH-HHHcCCCceEEECC------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 3578999998 89999999999754 6899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc--ccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT--REN 357 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--~~~ 357 (635)
+|++++|++|..+.+++.+++++++++++|+++... ......+.. .. ..+..++.++...... ...
T Consensus 94 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~-------~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~ 161 (541)
T TIGR03205 94 AGARVVHLSPLDGERALSHKLSDSGARLLITSDLAA-------LLPMALKFL---EK--GLLDRLIVCEDDNWGKVGTPQ 161 (541)
T ss_pred cCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchh-------hhHHHHHhh---hc--ccceEEEEecccccccccccc
Confidence 999999999999999999999999999999875321 011111111 10 1133344333211000 000
Q ss_pred ccc-CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhc------CCCCCc
Q 006688 358 TKW-QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF------DYKPSD 430 (635)
Q Consensus 358 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~------~~~~~d 430 (635)
... .......+.+.+.............++++++++|||||||.||||+++|+++..... ... .+ .....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~-~~~-~~~~~~~~~~~~~~ 239 (541)
T TIGR03205 162 APIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVS-IYD-VWGKPSRATRGDVE 239 (541)
T ss_pred cccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHH-HHH-hhcccccccCCCCc
Confidence 000 001122333333322212222345678999999999999999999999999664332 221 12 123357
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (635)
++++..|++|..++...++.++..|+++++.+. +++..+++.|+++++|++..+|+++..|++... ....++++
T Consensus 240 ~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~ 313 (541)
T TIGR03205 240 RVICVLPLFHIYALTVILLRSLRRGDLISLHQR----FDVAAVFRDIEEKRATVFPGVPTMWIALANDPS--LEKRDLSS 313 (541)
T ss_pred eEEEeccHHHHHHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--ccccCccc
Confidence 899999999988877778889999999988753 499999999999999999999999999987532 23446789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEE--cCCCCccC
Q 006688 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV--DEKGVEIE 588 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~Iv--D~~g~~vp 588 (635)
+|.+++||+++++++.+++.+.++ .++++.||+||++..++..... ....++++|+|++++.++|+ |+++++++
T Consensus 314 l~~i~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~ 389 (541)
T TIGR03205 314 LATIGSGGAPLPVEVANFFERKTG---LKLKSGWGMTETCSPGTGHPPE-GPDKPGSIGLMLPGIELDVVSLDDPTKVLP 389 (541)
T ss_pred cceEEEccccCCHHHHHHHHHHhC---CCeecccccccCCcccccCCCC-CCCCCCCcceeccCceeEEEecCCCCccCC
Confidence 999999999999999999988886 7899999999998765543221 12456789999999998875 57889999
Q ss_pred CCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 589 ~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.|+.|||+|+| ++++.||+++|+.+.+.|. ++||+|||++++
T Consensus 390 ~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGD~~~~ 431 (541)
T TIGR03205 390 PGEVGELRIRG--PNVTRGYWNRPEESAEAFV---GDRFLTGDIGYM 431 (541)
T ss_pred CCCeeEEEEec--CCccccccCChhhhHhhhc---cCCcccCceEEE
Confidence 99999999999 8999999999999988764 679999999985
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=432.52 Aligned_cols=401 Identities=19% Similarity=0.283 Sum_probs=308.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++++|+++|+++.+ +.+||+||.++++++|..|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 24 ~i~~~l~~~-a~~~p~~~a~~~~~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 96 (557)
T PRK07059 24 SLADLLEES-FRQYADRPAFICMG------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRA 96 (557)
T ss_pred CHHHHHHHH-HHHcCCCceEEEcC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 478899988 89999999999754 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc------
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT------ 354 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~------ 354 (635)
|++++|++|.++.+++.+++++++++++|+++... ..+...... ...+.++.........
T Consensus 97 G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 162 (557)
T PRK07059 97 GYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFA---------TTVQQVLAK-----TAVKHVVVASMGDLLGFKGHIV 162 (557)
T ss_pred CeEEeccCcccCHHHHHHHHHccCceEEEEchhhH---------HHHHHhhcc-----cCCceeEEeccccccccccccc
Confidence 99999999999999999999999999999876532 111111110 1222232221100000
Q ss_pred --------ccccccCCCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---H
Q 006688 355 --------RENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---Y 422 (635)
Q Consensus 355 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~ 422 (635)
.....+.......+.+.+.... .........++++|+|+|||||||.||||+++|++++.+...... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~ 242 (557)
T PRK07059 163 NFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP 242 (557)
T ss_pred ccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcc
Confidence 0000111111222333322211 112223456889999999999999999999999997655432211 1
Q ss_pred hcCCC---CCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcC
Q 006688 423 AFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499 (635)
Q Consensus 423 ~~~~~---~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~ 499 (635)
.+... ..++++...|++|.+++....+.++..|++.++.+.. .++..+++.|+++++|++..+|+++..|+...
T Consensus 243 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~ 319 (557)
T PRK07059 243 AFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNP---RDIPGFIKELKKYQVHIFPAVNTLYNALLNNP 319 (557)
T ss_pred cccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCC---cCHHHHHHHHHHhCCeeeecCHHHHHHHHcCc
Confidence 11111 2356778899999887666677888899998887642 38899999999999999999999999998864
Q ss_pred ccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEE
Q 006688 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI 579 (635)
Q Consensus 500 ~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~I 579 (635)
. ....+++++|.++.||+++++.+.++|.+.++ +++++.||+||++.+++..... ....+.++|+|++|++++|
T Consensus 320 ~--~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i 393 (557)
T PRK07059 320 D--FDKLDFSKLIVANGGGMAVQRPVAERWLEMTG---CPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSI 393 (557)
T ss_pred C--cCcCCchhheEEEeccccCCHHHHHHHHHHhC---CCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEE
Confidence 3 23456789999999999999999999998886 7899999999998765543221 2235678999999999999
Q ss_pred EcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 580 vD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|++++++|.|+.|||+|+| +.++.||+++++.+.+.|. .+|||+|||+|++
T Consensus 394 ~d~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~ 445 (557)
T PRK07059 394 RDDDGNDLPLGEPGEICIRG--PQVMAGYWNRPDETAKVMT--ADGFFRTGDVGVM 445 (557)
T ss_pred ECCCCCCCCCCCceEEEEeC--CccchhhhcCHHHHhhhcc--cCCceecCcEEEE
Confidence 99999999999999999999 8999999999999987764 3799999999985
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=430.38 Aligned_cols=378 Identities=20% Similarity=0.255 Sum_probs=292.9
Q ss_pred hccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCC
Q 006688 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290 (635)
Q Consensus 211 a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~ 290 (635)
|+++|+++|+++.+ .++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 7 a~~~p~~~a~~~~~----~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~ 82 (501)
T PRK13390 7 AQIAPDRPAVIVAE----TGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHH 82 (501)
T ss_pred hhhCCCCcEEEecC----CCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccC
Confidence 67899999998742 23789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhh
Q 006688 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370 (635)
Q Consensus 291 ~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (635)
++.+++.+++++++++++++++... ...... . ......+.+.... .....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~----~---~~~~~~~~~~~~~-----------~~~~~~~~ 135 (501)
T PRK13390 83 LTAPEADYIVGDSGARVLVASAALD---------GLAAKV----G---ADLPLRLSFGGEI-----------DGFGSFEA 135 (501)
T ss_pred CCHHHHHHHHHhcCCcEEEEcchhh---------hHHHHh----h---hccceEEEecCcc-----------cccccHHH
Confidence 9999999999999999999876431 111110 0 0111112111100 00111222
Q ss_pred hcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEE--ccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchh
Q 006688 371 VVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH--TTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHS 445 (635)
Q Consensus 371 ~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~--th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~ 445 (635)
...... + ......++++|+|||||||.||||++ +|.++..+. .......+++..+|+++..+|++|+.++.
T Consensus 136 ~~~~~~---~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~ 211 (501)
T PRK13390 136 ALAGAG---P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLR 211 (501)
T ss_pred HhcccC---C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHH
Confidence 211110 0 01122357999999999999999995 555543321 12223357888999999999999998864
Q ss_pred HHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHH
Q 006688 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (635)
Q Consensus 446 ~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l 525 (635)
+ .+..+..|+++++.+. +++..+++.|+++++|++.++|+++..|++.........+++++|.+++||+++++++
T Consensus 212 ~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~ 286 (501)
T PRK13390 212 W-CSMVHALGGTVVLAKR----FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDV 286 (501)
T ss_pred H-HHHHHhcCceEEEcCC----cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHH
Confidence 4 3446778999998764 4899999999999999999999999999875432223446789999999999999999
Q ss_pred HHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcch
Q 006688 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF 605 (635)
Q Consensus 526 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~ 605 (635)
.+.+.+.++ .++++.||+||++.++..... .....++++|+|++| .++|+|+++++++.|++|||+|+| ++++
T Consensus 287 ~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~--~~~~ 359 (501)
T PRK13390 287 KHAMIDWLG---PIVYEYYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFER--DRLP 359 (501)
T ss_pred HHHHHHhcC---CceeeeecccccCceEEecch-hhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEec--CCcc
Confidence 999998886 679999999999865443221 122456789999999 799999999999999999999999 8999
Q ss_pred hhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 606 RTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 606 ~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.||+++|+.|.+.|....+|||+|||+|++
T Consensus 360 ~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~ 389 (501)
T PRK13390 360 FRYLNDPEKTAAAQHPAHPFWTTVGDLGSV 389 (501)
T ss_pred ccccCChhhhHHhhccCCCceEEcCceEEE
Confidence 999999999998876555789999999985
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=431.94 Aligned_cols=409 Identities=21% Similarity=0.267 Sum_probs=311.6
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~i 271 (635)
.|++.... .+.++|+++ ++.+|+++|+.+.+ +.+||.||.++++++|..|.+.|+++|++|+|+++|+++++
T Consensus 26 ~~~~~~~~-~l~~~l~~~-a~~~p~~~al~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~ 97 (567)
T PRK06178 26 PEYPHGER-PLTEYLRAW-ARERPQRPAIIFYG------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97 (567)
T ss_pred CCCCcCcc-cHHHHHHHH-HHHCCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHH
Confidence 45665543 477888888 89999999999754 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCc
Q 006688 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (635)
Q Consensus 272 va~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (635)
++++||+++|++++|++|..+.+++.+++++++++++++++... +.+.+.... ..+..++......
T Consensus 98 ~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~l~~~~~~-----~~~~~i~~~~~~~ 163 (567)
T PRK06178 98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA---------PVVEQVRAE-----TSLRHVIVTSLAD 163 (567)
T ss_pred HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHHHhhcc-----CCcceEEEecccc
Confidence 99999999999999999999999999999999999999977542 112211111 1233343332111
Q ss_pred cccc-cccccCC----C--CcchhhhhcC---cCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH
Q 006688 352 AMTR-ENTKWQD----G--RDIWWQDVVP---KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (635)
Q Consensus 352 ~~~~-~~~~~~~----~--~~~~~~~~~~---~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~ 421 (635)
.... ....... . ....+.+... ............++++|+|+|||||||.||||+++|++++.+......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~ 243 (567)
T PRK06178 164 VLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYA 243 (567)
T ss_pred ccccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHH
Confidence 0000 0000000 0 0000111111 111111223356799999999999999999999999997765544444
Q ss_pred HhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc
Q 006688 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (635)
Q Consensus 422 ~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~ 501 (635)
....+.++|+++..+|++|..|+...++.+|..|+++++.++ +++..+++.|+++++|.+..+|..+..+++...
T Consensus 244 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~- 318 (567)
T PRK06178 244 VAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR----WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR- 318 (567)
T ss_pred HhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-
Confidence 346778899999999999998876678889999999999874 599999999999999999999999999887543
Q ss_pred ccccCCCCCceEEEe--cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCC---C--CCCCCCCCCCCCCCC
Q 006688 502 YVTRYSRKSLRVLGS--VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP---G--AWPQKPGSATFPFFG 574 (635)
Q Consensus 502 ~~~~~~l~sLr~v~~--gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~--~~~~~~~siG~pl~g 574 (635)
....+++++|.+.. .|+++++++.+.|.+.++ ...+.+.||+||++..+..... . ....+++++|+|+||
T Consensus 319 -~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g 395 (567)
T PRK06178 319 -FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTG--SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPG 395 (567)
T ss_pred -CCCCCcchheeeeeccccccCCHHHHHHHHHHhC--CcccccccccccccccceeccccccCccccccCCcccccccCC
Confidence 23445678887654 459999999999999887 2334468999998765433211 1 112346779999999
Q ss_pred CeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 575 VQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 575 ~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|+| +++++++.|++|||+|+| ++++.||+++++.+.+.|. +|||+|||+|++
T Consensus 396 ~~v~v~d~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~~---dg~~~TGDl~~~ 452 (567)
T PRK06178 396 TEFKICDFETGELLPLGAEGEIVVRT--PSLLKGYWNKPEATAEALR---DGWLHTGDIGKI 452 (567)
T ss_pred cEEEEEcCCCCCcCCCCCceEEEEEC--CcccccccCChhhhhhccc---CCceeecceEEE
Confidence 9999999 679999999999999999 9999999999999887763 789999999985
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=423.89 Aligned_cols=349 Identities=18% Similarity=0.214 Sum_probs=288.9
Q ss_pred hccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCC
Q 006688 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290 (635)
Q Consensus 211 a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~ 290 (635)
++..++++|+++.+ +++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|+++.
T Consensus 10 ~~~~~~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~ 78 (471)
T PRK07787 10 AAAADIADAVRIGG------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPD 78 (471)
T ss_pred hcccCCceEEEeCC------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCC
Confidence 45678999999754 78999999999999999996 47999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhh
Q 006688 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370 (635)
Q Consensus 291 ~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (635)
.+.+++..+++++++++++++..... ..+.... +... ...+
T Consensus 79 ~~~~~l~~~l~~~~~~~il~~~~~~~----------------------~~~~~~~-~~~~--------------~~~~-- 119 (471)
T PRK07787 79 SGVAERRHILADSGAQAWLGPAPDDP----------------------AGLPHVP-VRLH--------------ARSW-- 119 (471)
T ss_pred CChHHHHHHHHhcCCCEEEecCCccc----------------------cccccee-eecc--------------cccc--
Confidence 99999999999999999998753110 0000000 0000 0000
Q ss_pred hcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHH
Q 006688 371 VVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 450 (635)
Q Consensus 371 ~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~ 450 (635)
.......++|+++|+|||||||.||||+++|++++.+.. .....+++.++|++++.+|++|..++...++.
T Consensus 120 --------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 190 (471)
T PRK07787 120 --------HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLD-ALAEAWQWTADDVLVHGLPLFHVHGLVLGVLG 190 (471)
T ss_pred --------ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHH-HHHHhcCCCccceeEeccCCeeechhHHHHHH
Confidence 001123578999999999999999999999999776553 33456889999999999999999998888999
Q ss_pred HhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHH
Q 006688 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530 (635)
Q Consensus 451 ~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~ 530 (635)
++..|+++++.+. +++..+++.|+ +++|++..+|+++..|++... ....++++|.+++||++++++++++|.
T Consensus 191 ~l~~G~~~~~~~~----~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~---~~~~l~~l~~~~~gg~~~~~~~~~~~~ 262 (471)
T PRK07787 191 PLRIGNRFVHTGR----PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE---AARALRGARLLVSGSAALPVPVFDRLA 262 (471)
T ss_pred HHhcCCEEEecCC----CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc---ccccccceeEEEECCCCCCHHHHHHHH
Confidence 9999999998764 48999999999 999999999999999987532 234678999999999999999999999
Q ss_pred HHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccC-CC-cceEEEEecCCCcchhhh
Q 006688 531 NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GE-CSGYLCIKSSWPGAFRTL 608 (635)
Q Consensus 531 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp-~g-~~GEL~i~g~~~~v~~GY 608 (635)
+.++ .++++.||+||++...+.... ...+++++|+|++|++++|+|+++++++ .| .+|||+|+| +++++||
T Consensus 263 ~~~~---~~~~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g--~~~~~gy 335 (471)
T PRK07787 263 ALTG---HRPVERYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRG--PTLFDGY 335 (471)
T ss_pred HHcC---CCeecccCccccCcceecCCC--CcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEEC--cccchhh
Confidence 9886 689999999999865433322 2345678999999999999999999998 34 389999999 8999999
Q ss_pred cCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 609 YGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 609 ~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++.+.+.|.. +|||+|||+|++
T Consensus 336 ~~~~~~t~~~~~~--~~~~~TGDlg~~ 360 (471)
T PRK07787 336 LNRPDATAAAFTA--DGWFRTGDVAVV 360 (471)
T ss_pred cCChhhchhcccC--CCceecCceEEE
Confidence 9999999887753 789999999985
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=429.97 Aligned_cols=398 Identities=21% Similarity=0.259 Sum_probs=305.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++.+|+++|++.. .+.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 11 ~l~~~l~~~-a~~~p~~~a~~~~------~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~ 83 (540)
T PRK06164 11 TLASLLDAH-ARARPDAVALIDE------DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL 83 (540)
T ss_pred CHHHHHHHH-HHhCCCCeEEecC------CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 378899988 8999999999943 378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++..+.+++.+++++++++++|++++... ..+.+++.... ....+.++.++.++.... ..
T Consensus 84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~-- 150 (540)
T PRK06164 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVP---PDALPPLRAIAVVDDAAD----AT-- 150 (540)
T ss_pred CcEEEecCCCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhccc---ccccCCcceEEEeccCcc----cC--
Confidence 999999999999999999999999999999876421 11222221111 011123445554442110 00
Q ss_pred CCCCcchhhhhcCcCCCC----CCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 361 QDGRDIWWQDVVPKYPTK----CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
.......+.+........ .......++++++++|||||||.||||+++|++++.+. ......+++.+++++++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~l~~~ 229 (540)
T PRK06164 151 PAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA-RAIARAYGYDPGAVLLAAL 229 (540)
T ss_pred CCCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHH-HHHHHhcCCCCCCEEEEcC
Confidence 000000011111100000 00122346889999999999999999999999976554 4455578899999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|.+++ ..++.+|..|+++++.+. +++..+++.|+++++|+++++|+++..|.+... ...+++++|.+.+
T Consensus 230 p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~---~~~~~~~l~~~~~ 301 (540)
T PRK06164 230 PFCGVFGF-STLLGALAGGAPLVCEPV----FDAARTARALRRHRVTHTFGNDEMLRRILDTAG---ERADFPSARLFGF 301 (540)
T ss_pred CchhHHHH-HHHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc---ccCCCcceeeeee
Confidence 99999996 578999999999999764 489999999999999999999999999988622 3456789998877
Q ss_pred cC-CCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC-CCCCCCCCCCCCC-CCCeEEEEc-CCCCccCCCcc
Q 006688 517 VG-EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPF-FGVQPVIVD-EKGVEIEGECS 592 (635)
Q Consensus 517 gG-e~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~siG~pl-~g~~v~IvD-~~g~~vp~g~~ 592 (635)
+| .+...++.+++.+. + +++++.||+||++..++..... ....+..+.|+|+ +++.++|+| +++++++.|+.
T Consensus 302 ~~~~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~ 377 (540)
T PRK06164 302 ASFAPALGELAALARAR-G---VPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES 377 (540)
T ss_pred ccCCcchHHHHHHHhhc-C---CceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe
Confidence 76 55556666666554 4 7899999999998765443221 1123345678886 899999999 57899999999
Q ss_pred eEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 593 GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|||||+| ++++.||+++|+.|.+.|.. +|||+|||+|++
T Consensus 378 Gel~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGDl~~~ 416 (540)
T PRK06164 378 GEIEIRA--PSLMRGYLDNPDATARALTD--DGYFRTGDLGYT 416 (540)
T ss_pred eEEEEec--ccccccccCCchhhhhcccC--CCceecCCeEEE
Confidence 9999999 99999999999999888753 789999999985
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=431.52 Aligned_cols=399 Identities=22% Similarity=0.287 Sum_probs=303.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
.+.++|+++ ++.+|+++|+++.+ +.+||+||.+++.++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 25 ~~~~~~~~~-a~~~p~~~a~~~~~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (563)
T PRK06710 25 PLHKYVEQM-ASRYPEKKALHFLG------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLA 97 (563)
T ss_pred cHHHHHHHH-HHHCCCceEEEecC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 478899888 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCc--cc-ccc-
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS--AM-TRE- 356 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~--~~-~~~- 356 (635)
|++++|++|.++.+++.++++.++++++++++........ .... .....++...... .. ...
T Consensus 98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 163 (563)
T PRK06710 98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTN---------VQSA-----TKIEHVIVTRIADFLPFPKNLL 163 (563)
T ss_pred CeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhc---------cchh-----hccceeEEeccccccccccccc
Confidence 9999999999999999999999999999998754221100 0000 0111121110000 00 000
Q ss_pred ---------c--cccCCCC-cchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhc
Q 006688 357 ---------N--TKWQDGR-DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424 (635)
Q Consensus 357 ---------~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~ 424 (635)
. ....... ...|.................++++++|+|||||||.||||.++|++++.+........+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~ 243 (563)
T PRK06710 164 YPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLY 243 (563)
T ss_pred cchhhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhcc
Confidence 0 0000000 001111111101111111123578999999999999999999999997655433333334
Q ss_pred CCCC-CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccc
Q 006688 425 DYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (635)
Q Consensus 425 ~~~~-~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~ 503 (635)
++.. ++++++..|++|.+++...++.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|++... .
T Consensus 244 ~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~ 317 (563)
T PRK06710 244 NCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK----FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--L 317 (563)
T ss_pred CCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC----CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc--c
Confidence 4444 45788999999988876666778999999999764 489999999999999999999999999987643 1
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-C
Q 006688 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-E 582 (635)
Q Consensus 504 ~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~ 582 (635)
...+++++|.+++||+++++++.+++.+.++ .++++.||+||++..+..... .....++++|+|++++.++|+| +
T Consensus 318 ~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~~~~ 393 (563)
T PRK06710 318 KEYDISSIRACISGSAPLPVEVQEKFETVTG---GKLVEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLE 393 (563)
T ss_pred ccCChhhhhheeeCCCcCCHHHHHHHHHhhC---CCEecccccccCccccccCcc-cccccCCccCCCCCCCeEEEEECC
Confidence 3345689999999999999999999988886 789999999999875443321 1123467899999999999999 6
Q ss_pred CCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 583 KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 583 ~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++++.|+.|||+|+| +.+++||+++++.+...| .+|||+|||+|++
T Consensus 394 ~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~---~~g~~~TGD~~~~ 441 (563)
T PRK06710 394 TGEALPPGEIGEIVVKG--PQIMKGYWNKPEETAAVL---QDGWLHTGDVGYM 441 (563)
T ss_pred CCccCCCCCceEEEEec--CccchhhhCChHHHhhhc---ccCcccccceEEE
Confidence 88999999999999999 899999999999988765 3789999999874
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=425.73 Aligned_cols=368 Identities=19% Similarity=0.168 Sum_probs=293.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+.|+++ ++.+|+++|+++.+ +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 37 ~~~~~~~~-a~~~p~~~a~~~~~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G 109 (516)
T PRK13383 37 PYTLLAVT-AARWPGRTAIIDDD------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLG 109 (516)
T ss_pred HHHHHHHH-HHHCCCCcEEEeCC------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 56667777 88999999998643 579999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++++++.... .+... ...++.++...
T Consensus 110 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~----------~~~~~~~~~~~---------- 160 (516)
T PRK13383 110 ADVVPISTEFRSDALAAALRAHHISTVVADNEFAE---------RIAGA----------DDAVAVIDPAT---------- 160 (516)
T ss_pred eEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHHhh----------hcceEEeccch----------
Confidence 99999999999999999999999999999865421 11100 01122222110
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHH--HHHHHhcCCCCCcEEEEeCCcc
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~--~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
.. . .. . ...+..+++.++|+|||||||.||||+++|... +... ......+++.++|+++...|++
T Consensus 161 ----~~---~-~~-~---~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 227 (516)
T PRK13383 161 ----AG---A-EE-S---GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLR-SAVGVWVTILDRTRLRTGSRISVAMPMF 227 (516)
T ss_pred ----hh---h-hc-C---CCCCCCCCCCcEEEECCCCCCCCCeeeecchhh-hhhhhHHhHHhhhccCCCCeEEEecCCc
Confidence 00 0 00 0 001123456789999999999999999999742 2111 1122346788999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++ ..++.++..|+++++... ++++.+++.++++++|.+.++|+++..|.+..........++++|.+++||+
T Consensus 228 h~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~ 302 (516)
T PRK13383 228 HGLGL-GMLMLTIALGGTVLTHRH----FDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGD 302 (516)
T ss_pred chhhH-HHHHHHHhcCCEEEECCC----CCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCC
Confidence 99996 457788999999988653 5899999999999999999999999999876432112345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++++++|.+.++ ..+++.||+||++..+..... .....++++|+|++|++++|+|++++++++|+.|||+|+|
T Consensus 303 ~l~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g 378 (516)
T PRK13383 303 RLDPTLGQRFMDTYG---DILYNGYGSTEVGIGALATPA-DLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGG 378 (516)
T ss_pred CCCHHHHHHHHHHcC---chhhhcccccccccceecccc-ccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 999999999999987 679999999999865543322 2234567899999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.++.||++++... + .+|||+|||+|++
T Consensus 379 --~~~~~~Y~~~~~~~----~--~~g~~~TGDl~~~ 406 (516)
T PRK13383 379 --ELAGTRYTDGGGKA----V--VDGMTSTGDMGYL 406 (516)
T ss_pred --CcccccccCCchhh----e--ecCceecceeEEE
Confidence 88999999886522 1 3799999999975
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=424.03 Aligned_cols=379 Identities=17% Similarity=0.216 Sum_probs=308.2
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++.+|+++|+.+.+ +.+||+||.++++++|..|++.|+++|++|+++++|+.+++++++||+++|
T Consensus 4 ~~~~l~~~-a~~~p~~~~~~~~~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G 76 (503)
T PRK04813 4 IIETIEEF-AQTQPDFPAYDYLG------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG 76 (503)
T ss_pred HHHHHHHH-HHhCCCceEEEeCC------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 56888888 89999999999654 679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++..+++.++++++++++...... ..+ .++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~------------ 123 (503)
T PRK04813 77 HAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------------------LGI-PVITLDE------------ 123 (503)
T ss_pred CEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------------------cCC-cEEehHH------------
Confidence 9999999999999999999999999999987541100 000 0111110
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
+.+...............++++++++|||||||.||+|.++|+++..+.. +....+++..+++++...|++|.
T Consensus 124 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 124 ------LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTN-WMLEDFALPEGPQFLNQAPYSFD 196 (503)
T ss_pred ------hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHH-HHHHHcCCCcCceeeecCCcchh
Confidence 00000000111112234678999999999999999999999999776554 34446889999999999999999
Q ss_pred cchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 442 ~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
.++ +.++.+|..|+++++.+.... .++..+++.++++++|++..+|++++.++.... ....+++++|.++++|+++
T Consensus 197 ~~~-~~~~~~l~~g~~~v~~~~~~~-~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~--~~~~~~~~l~~i~~~G~~l 272 (503)
T PRK04813 197 LSV-MDLYPTLASGGTLVALPKDMT-ANFKQLFETLPQLPINVWVSTPSFADMCLLDPS--FNEEHLPNLTHFLFCGEEL 272 (503)
T ss_pred HhH-HHHHHHHhcCCEEEEcChhhh-cCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc--cCcccCCCceEEEEecCcC
Confidence 884 678889999999999886433 389999999999999999999999988765432 2345678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcccccccccccccccccccC--C-CCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--P-GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~-~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++.+.+++.+.++ +..+++.||+||++..++... . .....+..++|+|+++++++|+|+++.+++.|+.|||+|+
T Consensus 273 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~ 350 (503)
T PRK04813 273 PHKTAKKLLERFP--SATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVIS 350 (503)
T ss_pred CHHHHHHHHHHCC--CceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999986 478999999999876443321 1 1112445679999999999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCC-CCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKP-FPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~-~~g~yrTGDlgr~ 635 (635)
| ++++.||+++++.+.+.|+.. ..+||+|||+|++
T Consensus 351 ~--~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~ 386 (503)
T PRK04813 351 G--PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL 386 (503)
T ss_pred c--cccccccCCChhHhHHhhccCCCceeEECCceEEe
Confidence 9 899999999999999888652 2349999999985
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=425.02 Aligned_cols=398 Identities=19% Similarity=0.235 Sum_probs=305.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|++++++.... +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~~~~~-a~~~~~~~~~~~~~~--~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 11 LCHRIIDHA-ARIHGNREVVTRSVE--GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CHHHHHHHH-HHhCCCceEEEeecc--CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 377899988 899999999985321 33578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++..+++++++++++++.... ..+.+.. ...+.++.++.+.+..... ..
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~-- 150 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFV---------PILEKIA----DKLPSVERYVVLTDAAHMP--QT-- 150 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccccH---------HHHHHHH----hhCCCccEEEEeccccccc--cc--
Confidence 99999999999999999999999999999986542 1222211 1223445555443321000 00
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHH-HHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV-HTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
.......+.+++.............++++++|+|||||||.||||+++|++++. .........++++.+|+++...|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 230 (542)
T PRK06018 151 TLKNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLF 230 (542)
T ss_pred CccccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHH
Confidence 000112333333332222222345678899999999999999999999997432 2223334467889999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++. ..+.++..|+++++.... +++..+++.++++++|++..+|+++..|++.... ...++++||.+++|||
T Consensus 231 h~~~~~-~~~~~~~~g~~~v~~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~G~ 304 (542)
T PRK06018 231 HANSWG-IAFSAPSMGTKLVMPGAK---LDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEK--EGLKLPHLKMVVCGGS 304 (542)
T ss_pred HHhhhH-HHHhhhhcCceEEccCcC---CCHHHHHHHHHhcCCceeecCcHHHHHHHhcccc--cCCCcccceEEEEcCC
Confidence 988753 456788999999986432 4889999999999999999999999999876532 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccC-CCC--------CCCCCCCCCCCCCCCeEEEEcCCCCccCCC
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGA--------WPQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~--------~~~~~~siG~pl~g~~v~IvD~~g~~vp~g 590 (635)
+++++++++|++ ++ .++++.||+||++.+.+... ... ......++|+|++|++++|+|++++++|.+
T Consensus 305 ~l~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~ 380 (542)
T PRK06018 305 AMPRSMIKAFED-MG---VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWD 380 (542)
T ss_pred CCCHHHHHHHHH-hC---CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCC
Confidence 999999999988 76 78999999999986544321 110 001235799999999999999999998853
Q ss_pred --cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 591 --CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 591 --~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
..|||+|+| ++++.||+++.. .. + ..+|||+|||++++
T Consensus 381 ~~~~Gel~i~g--~~~~~gy~~~~~---~~-~-~~~~~~~TGDl~~~ 420 (542)
T PRK06018 381 GKTFGRLKVRG--PAVAAAYYRVDG---EI-L-DDDGFFDTGDVATI 420 (542)
T ss_pred CCceeEEEEec--CCcchhhhcCcc---cE-e-cCCcEEEcCCEEEE
Confidence 689999999 899999999432 21 1 24789999999874
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=427.07 Aligned_cols=400 Identities=20% Similarity=0.239 Sum_probs=305.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.+.++|+++ ++++|+++|+++.+ +.+||+||.++++++|+.|+ +.|+++||+|+++++|++++++++|||++
T Consensus 26 ~~~~~l~~~-~~~~~~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 26 TVAEVFATS-VAKFADRPAYHSFG------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred cHHHHHHHH-HHhCCCCceEEECC------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 377889888 89999999999644 78999999999999999997 68999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc-----
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT----- 354 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----- 354 (635)
+|++++|++|.++.+++.+++++++++++++++... ..+.+.... .....++..+......
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 164 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFG---------TTVQQVIAD-----TPVKQVITTGLGDMLGFPKAA 164 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhH---------HHHHHHhhC-----CCccEEEEechhhhcccccch
Confidence 999999999999999999999999999999987542 111111111 1222333221000000
Q ss_pred ---------cc-ccccCCCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh
Q 006688 355 ---------RE-NTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (635)
Q Consensus 355 ---------~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 423 (635)
.. ...........+.+...... ...+.....++++++|+|||||||.||||+++|.+++.+...... .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-~ 243 (560)
T PRK08751 165 LVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQ-W 243 (560)
T ss_pred hhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHH-h
Confidence 00 00000001111222221111 111223356789999999999999999999999997665543322 2
Q ss_pred cC----CCCC-cEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhc
Q 006688 424 FD----YKPS-DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (635)
Q Consensus 424 ~~----~~~~-d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~ 498 (635)
++ +.++ ++++...++.|..++....+.++..|+++++.... +++..+++.|+++++|++..+|.++..+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 320 (560)
T PRK08751 244 LAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNP---RDMPGFVKELKKTRFTAFTGVNTLFNGLLNT 320 (560)
T ss_pred hccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCc---CCHHHHHHHHHhcceeEecChHHHHHHHHcC
Confidence 32 3343 56778899999888766667778888888877542 4889999999999999999999999999886
Q ss_pred CccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEE
Q 006688 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (635)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~ 578 (635)
.. ....++++||.+++||+++++++.+.|.+.++ +++++.||+||++..++.... .....++++|+|+++++++
T Consensus 321 ~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~ 394 (560)
T PRK08751 321 PG--FDQIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDAC 394 (560)
T ss_pred cC--cCCcchhhheeeeeCCCCCCHHHHHHHHHHhC---CeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEE
Confidence 43 23456789999999999999999999999886 789999999999876543322 1224567899999999999
Q ss_pred EEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 579 IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+|+++++++.|+.|||+|+| +.+++||+++|+.+.+.|. .+|||+|||+|++
T Consensus 395 i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~ 447 (560)
T PRK08751 395 IKDDAGTVLAIGEIGELCIKG--PQVMKGYWKRPEETAKVMD--ADGWLHTGDIARM 447 (560)
T ss_pred EECCCCCCCCCCCceEEEEec--CccchhhcCChhhhhhccc--cCCCccccceEEE
Confidence 999999999999999999999 8999999999999887764 3789999999975
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=425.68 Aligned_cols=393 Identities=18% Similarity=0.247 Sum_probs=290.4
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++.+|+++|+++.+ +++||+||+++++++|+.|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 16 ~~~~l~~~-~~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G 88 (579)
T PLN03102 16 PITFLKRA-SECYPNRTSIIYGK------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAG 88 (579)
T ss_pred HHHHHHHH-HHhCCCCeEEEECC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 57788888 88999999999754 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhh--cCCCccEEEEecCCccccccccc
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK--SGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
++++||+|.++.+++.++++.+++++||+++... ..+......+.. ....+ .++.++.... ..
T Consensus 89 ~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~ 153 (579)
T PLN03102 89 AVLNPINTRLDATSIAAILRHAKPKILFVDRSFE---------PLAREVLHLLSSEDSNLNL-PVIFIHEIDF-----PK 153 (579)
T ss_pred cEEeeccccCCHHHHHHHHhccCCeEEEEChhhH---------HHHHHHHhhccccccccCc-eEEEeccccc-----cc
Confidence 9999999999999999999999999999976542 112222111100 00111 2333332110 00
Q ss_pred cCCCCcchhhhhcCcCCCCC-----CcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEE
Q 006688 360 WQDGRDIWWQDVVPKYPTKC-----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 434 (635)
........+.++........ ......++++++|+|||||||.||||+++|+++....... ...+.+...++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~-~~~~~~~~~~~~l~ 232 (579)
T PLN03102 154 RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSA-IIGWEMGTCPVYLW 232 (579)
T ss_pred CCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHH-HhhcCCCCCCeEEe
Confidence 00001122333322211110 0112457899999999999999999999999965443322 23456677889999
Q ss_pred eCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEE
Q 006688 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (635)
Q Consensus 435 ~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v 514 (635)
.+|++|..++. ..+.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++.... .....++++.+
T Consensus 233 ~~pl~h~~g~~-~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~ 305 (579)
T PLN03102 233 TLPMFHCNGWT-FTWGTAARGGTSVCMRH----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL--DLSPRSGPVHV 305 (579)
T ss_pred cCChhhhcchh-HHHHHHHhcCcEEeecc----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc--ccCCcccceEE
Confidence 99999988854 45678889999998864 4788999999999999999999999999876431 22345678899
Q ss_pred EecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC------------CCCCCCCCCCCCCCCeEEEEc-
Q 006688 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA------------WPQKPGSATFPFFGVQPVIVD- 581 (635)
Q Consensus 515 ~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------------~~~~~~siG~pl~g~~v~IvD- 581 (635)
++||+++++.+.+++.+ ++ .++++.||+||+++.++...... .....+..+.|++ .++|+|
T Consensus 306 ~~gg~~~~~~~~~~~~~-~g---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~ 379 (579)
T PLN03102 306 LTGGSPPPAALVKKVQR-LG---FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNK 379 (579)
T ss_pred EECCCCCCHHHHHHHHH-cC---CeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEecc
Confidence 99999999999998865 55 78999999999986443221100 0012233344444 456667
Q ss_pred CCCCccCC--CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 582 EKGVEIEG--ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 582 ~~g~~vp~--g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.+++++. ++.|||+|+| +++++|||++|+.+.+.|. +|||+|||+|++
T Consensus 380 ~~~~~v~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~---~gw~~TGDlg~~ 430 (579)
T PLN03102 380 ETQESVPRDGKTMGEIVIKG--SSIMKGYLKNPKATSEAFK---HGWLNTGDVGVI 430 (579)
T ss_pred ccccccCCCCCCceEEEEEC--cchhhhhcCChhhhHhhhc---cCceecCceEEE
Confidence 45777774 4689999999 8999999999999988763 789999999985
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=429.10 Aligned_cols=396 Identities=20% Similarity=0.215 Sum_probs=290.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCC---CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
+.++|+++ ++.+|+++|+++.+.+ .+..+.+||+||.++++++|+.|++.| .+||+|+|+++|++++++++|||+
T Consensus 3 ~~~~l~~~-a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 3 VPSLLRER-ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred HHHHHHHH-HhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 56788888 8999999999975421 122478999999999999999999999 689999999999999999999999
Q ss_pred HhCCeEEecCC---CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc
Q 006688 279 RIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (635)
Q Consensus 279 ~~Ga~~vpld~---~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (635)
++|++++|+++ ..+.+++.++++++++++|++++.... .+....... .......++.++...
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~---- 145 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVD---------DVTEYVAPQ--PGQSAPPVIEVDLLD---- 145 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHH---------HHHHHHhhc--ccccccceEeecccc----
Confidence 99999999997 457899999999999999999765321 111111000 001112222221110
Q ss_pred cccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcC-----CCCCc
Q 006688 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSD 430 (635)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-----~~~~d 430 (635)
.... .........++++++|+|||||||.||||+++|++++.+........+. ..+++
T Consensus 146 ---------------~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
T PRK05850 146 ---------------LDSP--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT 208 (578)
T ss_pred ---------------cccC--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcc
Confidence 0000 0011123467899999999999999999999999977655443332333 35578
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHH-HHHHHhcCc-cccccCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL-VRSLMRDGN-EYVTRYSR 508 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~-l~~l~~~~~-~~~~~~~l 508 (635)
++++..|++|+.+++..++.+++.|+++++.+......++..+++.+++++++++ .+|.+ +..+..... ......++
T Consensus 209 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 287 (578)
T PRK05850 209 TVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDL 287 (578)
T ss_pred eEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcch
Confidence 9999999999999888899999999999998642222378999999999999865 45554 444433211 11123457
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCCCC-----------------------C
Q 006688 509 KSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW-----------------------P 562 (635)
Q Consensus 509 ~sLr~v~~gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~~~-----------------------~ 562 (635)
+++|.+++||++++++++++|.+.++. ++..+++.||+||++..+........ .
T Consensus 288 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 367 (578)
T PRK05850 288 GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGG 367 (578)
T ss_pred hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCC
Confidence 899999999999999999999888742 23479999999998754433211100 0
Q ss_pred CCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC---------CCCceEEcCCe
Q 006688 563 QKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTGDG 632 (635)
Q Consensus 563 ~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~---------~~~g~yrTGDl 632 (635)
....++|+|. +.+++|+|+ ++++++.|+.|||+|+| ++++.||+++|+.+.+.|.. ..+|||+|||+
T Consensus 368 ~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl 444 (578)
T PRK05850 368 TPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHG--DNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDL 444 (578)
T ss_pred ceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEec--CcccccccCChhhhHHHhhcccccccccCCCCCeeeccce
Confidence 0112456664 679999994 58899999999999999 89999999999999988742 12469999999
Q ss_pred Eec
Q 006688 633 CSR 635 (635)
Q Consensus 633 gr~ 635 (635)
|++
T Consensus 445 ~~~ 447 (578)
T PRK05850 445 GFI 447 (578)
T ss_pred eeE
Confidence 974
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=416.82 Aligned_cols=382 Identities=21% Similarity=0.267 Sum_probs=298.0
Q ss_pred hccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCC
Q 006688 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290 (635)
Q Consensus 211 a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~ 290 (635)
++++|+++|+++..+ .+.+||.||.++++++|+.|++.|+++|++|+++++|+++++++++||+++|++++|+++.
T Consensus 7 a~~~p~~~a~~~~~~----~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 7 AQTTPDKPAVIMAST----GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred HhhCCCceEEEecCC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 788999999997532 3679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhh
Q 006688 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370 (635)
Q Consensus 291 ~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (635)
++.+++.++++++++++++++.... ..+.+. ..........+.++.... ......+.+
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 140 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKL---------DVARAL----LKQCPGVRHRLVLDGDGE---------LEGFVGYAE 140 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhH---------HHHHHH----HhcCCCceEEEEecCCCC---------CcccccHHH
Confidence 9999999999999999999986532 111111 111223333443332110 000111222
Q ss_pred hcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEc--cchHHHH--HHHHHHHhcCCCCCcEEEEeCCcceecchhH
Q 006688 371 VVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT--TGGYMVH--TATTFKYAFDYKPSDVYWCTADCGWITGHSY 446 (635)
Q Consensus 371 ~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~t--h~~l~~~--~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~ 446 (635)
....... ......++.++++|||||||.||||+++ |.++... ........+++.++++++...|++|..++.
T Consensus 141 ~~~~~~~---~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~- 216 (511)
T PRK13391 141 AVAGLPA---TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR- 216 (511)
T ss_pred HhcCCCC---CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-
Confidence 2221110 1112344679999999999999999964 6653221 223334457788899999999999998854
Q ss_pred HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHH
Q 006688 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAW 526 (635)
Q Consensus 447 ~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~ 526 (635)
..+.++..|+++++.+. +++..+++.++++++|++.++|+++..+++.........+++++|.+++||++++++++
T Consensus 217 ~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~ 292 (511)
T PRK13391 217 AVMLVIRLGGTVIVMEH----FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVK 292 (511)
T ss_pred HHHHHHHcCceEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHH
Confidence 55778999999999864 59999999999999999999999999988754332234467899999999999999999
Q ss_pred HHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchh
Q 006688 527 RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606 (635)
Q Consensus 527 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~ 606 (635)
+++.+.++ ..+++.||+||++.++..... .....++++|+|+++ .++|+|+++++++.|+.|||+++| + ++.
T Consensus 293 ~~~~~~~g---~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel~~~g--~-~~~ 364 (511)
T PRK13391 293 EQMIDWWG---PIIHEYYAATEGLGFTACDSE-EWLAHPGTVGRAMFG-DLHILDDDGAELPPGEPGTIWFEG--G-RPF 364 (511)
T ss_pred HHHHHHcC---CceeeeeccccccceEEecCc-cccccCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEec--C-cce
Confidence 99999887 679999999999876543322 123456789999999 699999999999999999999999 8 888
Q ss_pred hhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 607 TLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 607 GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+++++.+.+.+... +|||+|||+|++
T Consensus 365 gy~~~~~~~~~~~~~~-~~w~~TGD~g~~ 392 (511)
T PRK13391 365 EYLNDPAKTAEARHPD-GTWSTVGDIGYV 392 (511)
T ss_pred EEcCChhHhHHhhccC-CCEEecCCEEEE
Confidence 9999999998887542 589999999975
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=427.13 Aligned_cols=392 Identities=18% Similarity=0.173 Sum_probs=294.3
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
..+.++|+.. ++.+|+.++ +..+ ++..+.+||.||+++++++|..|+++|+++||+|+|+++|++++++++|||++
T Consensus 21 ~~~~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 96 (579)
T PRK09192 21 PTLVEALDYA-ALGEAGMNF-YDRR--GQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQY 96 (579)
T ss_pred hhHHHHHHHh-hccCCceEE-EecC--CCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 3588999987 677775554 3322 13357899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCC-------HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 006688 280 IGAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (635)
Q Consensus 280 ~Ga~~vpld~~~~-------~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (635)
+|++++|+|+..+ .+++.++++.++++++|+++... ..+.+.... .....+..
T Consensus 97 ~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~---------~~~~~~~~~-----~~~~~~~~------ 156 (579)
T PRK09192 97 AGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELL---------PWVNEATHG-----NPLLHVLS------ 156 (579)
T ss_pred cCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHH---------HHHHHhhcc-----ccccceee------
Confidence 9999999987543 68999999999999999976532 111111100 11111111
Q ss_pred ccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEE
Q 006688 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (635)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 432 (635)
+.++..............++++++|+|||||||.||||+++|++++.+........+++.++|++
T Consensus 157 ---------------~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~ 221 (579)
T PRK09192 157 ---------------HAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRC 221 (579)
T ss_pred ---------------hhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeE
Confidence 11111111111112234678999999999999999999999999876654443336889999999
Q ss_pred EEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc-ccccCCCCCc
Q 006688 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSL 511 (635)
Q Consensus 433 l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~-~~~~~~l~sL 511 (635)
+..+|++|+.+++..++.++..|+++++.+......++..+++.+.++++++++.+|.++..+...... .....+++++
T Consensus 222 l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~l 301 (579)
T PRK09192 222 VSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCW 301 (579)
T ss_pred EEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhh
Confidence 999999999997767778899999998765322223688999999999999877766666555433211 1123567899
Q ss_pred eEEEecCCCCCHHHHHHHHHHhCCC---CcccccccccccccccccccCCCCC--------------------------C
Q 006688 512 RVLGSVGEPINPSAWRWFFNVVGDS---RCPISDTWWQTETGGFMITPLPGAW--------------------------P 562 (635)
Q Consensus 512 r~v~~gGe~l~~~l~~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~ 562 (635)
|.+++||+++++++++.|.+.++.. ...+++.||+||++..++....... .
T Consensus 302 r~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (579)
T PRK09192 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRV 381 (579)
T ss_pred heeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccc
Confidence 9999999999999999998887421 1358999999999865543221100 0
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 563 ~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
....++|+|+||++++|+|+++++++.|+.|||+|+| +++++||+++ +.+.+.+. .+|||+|||+|++
T Consensus 382 ~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g--~~~~~gY~~~-~~~~~~~~--~dgw~~TGDlg~~ 449 (579)
T PRK09192 382 RTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRG--PSLMSGYFRD-EESQDVLA--ADGWLDTGDLGYL 449 (579)
T ss_pred eeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecC--CchhhhhcCC-cccccccc--CCceeeccceeeE
Confidence 1125799999999999999999999999999999999 8999999999 55655554 3789999999974
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=418.00 Aligned_cols=400 Identities=18% Similarity=0.225 Sum_probs=303.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.+.++|+++ ++++|+++|+++.+ +.+||+||.++++++|..|++ .|+++|++|+|+++|++++++++|||++
T Consensus 24 ~l~~~l~~~-a~~~p~~~a~~~~~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 24 SLVDMFEQA-VARYADQPAFINMG------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred cHHHHHHHH-HHhCCCCceEEECC------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 377899988 89999999999643 689999999999999999984 8999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccc-cc-
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR-EN- 357 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~- 357 (635)
+|++++|++|.++.+++.+++++++++++++++.... .+.+.... .....++.......... ..
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 162 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAH---------TLEKVVFK-----TPVKHVILTRMGDQLSTAKGT 162 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccH---------HHHHHhhh-----cCcceEEEecccccccccccc
Confidence 9999999999999999999999999999998765321 11111111 11222221110000000 00
Q ss_pred -------------cccCCCCcchhhhhcCcCCC-CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh
Q 006688 358 -------------TKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (635)
Q Consensus 358 -------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 423 (635)
..........+.+....... ........++++++|+|||||||.||||.++|++++.+........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~ 242 (560)
T PRK08974 163 LVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAY 242 (560)
T ss_pred cccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhh
Confidence 00000000011111111110 1111224678999999999999999999999999766543322211
Q ss_pred --cCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc
Q 006688 424 --FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (635)
Q Consensus 424 --~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~ 501 (635)
.....+++++..+|++|.+++....+.++..|+++++.... .++..+++.++++++|++..+|++++.|+....
T Consensus 243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 318 (560)
T PRK08974 243 GPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNP---RDIPGFVKELKKYPFTAITGVNTLFNALLNNEE- 318 (560)
T ss_pred ccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCc---cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC-
Confidence 11234677888899999888766677788899998886532 378899999999999999999999999987643
Q ss_pred ccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc
Q 006688 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581 (635)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD 581 (635)
....+++++|.+++||+++++.+.++|.+.++ .++++.||+||++..++..... ....++++|+|+||++++|+|
T Consensus 319 -~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~ 393 (560)
T PRK08974 319 -FQELDFSSLKLSVGGGMAVQQAVAERWVKLTG---QYLLEGYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVD 393 (560)
T ss_pred -cccCCccceeEEEecCccCCHHHHHHHHHHhC---CcEEeeecccccCceeeccCCC-CcccCCccccCcCCCEEEEEC
Confidence 23455789999999999999999999999876 7899999999998765543222 234567899999999999999
Q ss_pred CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 582 ~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++++.|+.|||+|+| +.+++||+++++.+.+.| .+|||+|||+|++
T Consensus 394 ~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~ 442 (560)
T PRK08974 394 DDGNEVPPGEPGELWVKG--PQVMLGYWQRPEATDEVI---KDGWLATGDIAVM 442 (560)
T ss_pred CCCCCCCCCCceEEEEec--CCcchhhcCChhhhhhhh---hcCCcccCCEEEE
Confidence 999999999999999999 899999999999887776 3789999999985
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=419.18 Aligned_cols=402 Identities=17% Similarity=0.203 Sum_probs=295.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
....|+++ ++.+|+++|+++.+ +.+||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~~-~~~~p~~~a~~~~~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 94 (567)
T PLN02479 22 PLWFLERA-AVVHPTRKSVVHGS------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAG 94 (567)
T ss_pred HHHHHHHH-HhhCCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCC
Confidence 56777887 78999999999643 679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhh---cCCCccEEEEecCCcccccccc
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK---SGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
++++|+++.++.+++.+++++++++++|+++.... ...++...+.. .......++.+...........
T Consensus 95 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (567)
T PLN02479 95 AVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFT---------LAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ 165 (567)
T ss_pred cEEEEeccccCHHHHHHHHhhcCceEEEEchhhhh---------HHHHHHHHHhhcccccCCCceEEEecCCcCCccccc
Confidence 99999999999999999999999999999875421 11111111110 0111223343332110000000
Q ss_pred ccCCCCcchhhhhcCcCCCCCC-cccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
.....+...+.+++........ ......+++++++|||||||.||||+++|++++..... ....++++++|++++.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~~~~~~~p 244 (567)
T PLN02479 166 YALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALS-NALIWGMNEGAVYLWTLP 244 (567)
T ss_pred cccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHH-HHhhcCCCCCCEEEEecc
Confidence 0000112234444433211111 11223457888999999999999999999997654433 334678899999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEec
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (635)
++|..++...++.++..|.++++. . +++..+++.++++++|++..+|+++..|++.... ....+++++|.++++
T Consensus 245 ~~h~~~~~~~~~~~~~~g~~~~~~-~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~l~~~~~~ 318 (567)
T PLN02479 245 MFHCNGWCFTWTLAALCGTNICLR-Q----VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKS-ETILPLPRVVHVMTA 318 (567)
T ss_pred hhhhhhHHHHHHHHhhcCceEecc-C----CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhh-cccccccceeEEEEc
Confidence 999988654444456666666553 2 4999999999999999999999999999876431 111256899999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCcccccccccccccccccccC--C-------CCCCCCCCCCCCCCCCCe-EEEEc-CCCCc
Q 006688 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--P-------GAWPQKPGSATFPFFGVQ-PVIVD-EKGVE 586 (635)
Q Consensus 518 Ge~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~-------~~~~~~~~siG~pl~g~~-v~IvD-~~g~~ 586 (635)
|++++++++++|.+. + .++++.||+||+++.++... + ........++|.+.+|.. ++|+| +++++
T Consensus 319 G~~~~~~~~~~~~~~-~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~ 394 (567)
T PLN02479 319 GAAPPPSVLFAMSEK-G---FRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKP 394 (567)
T ss_pred CCCCCHHHHHHHHhc-C---CceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcc
Confidence 999999999998764 4 78999999999865432211 0 000011235788899886 89999 57888
Q ss_pred cCCC--cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 587 IEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 587 vp~g--~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++.+ ++|||+|+| ++++.|||++|+.|.+.|. +|||+|||+|++
T Consensus 395 ~~~~g~~~GEl~v~g--~~~~~GY~~~~~~t~~~~~---~g~~~TGDl~~~ 440 (567)
T PLN02479 395 VPADGKTMGEIVMRG--NMVMKGYLKNPKANEEAFA---NGWFHSGDLGVK 440 (567)
T ss_pred cCCCCCCceEEEEec--cchhhhhhcCcccccchhc---CCceecceeEEE
Confidence 8854 689999999 8999999999999988874 789999999985
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=415.07 Aligned_cols=369 Identities=21% Similarity=0.230 Sum_probs=293.0
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.++|+++ +. ++++|+++.+ +.+||+||.++++++|+.|+++ |++++++|+|+++|+++++++++||+++
T Consensus 7 ~~~~l~~~-a~--~~~~a~~~~~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~ 77 (529)
T PRK07867 7 VAELLLPL-AE--DDDRGLYFED------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALS 77 (529)
T ss_pred HHHHHHHh-cc--cCCceEEECC------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 67888876 43 8999999754 7899999999999999999997 8999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++.+++++++++++|+++.... .+.. +. ..+. ++..+.
T Consensus 78 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~----~~---~~~~-~~~~~~----------- 129 (529)
T PRK07867 78 GIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAE---------LLDG----LD---PGVR-VINVDS----------- 129 (529)
T ss_pred CCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHH---------HHHh----hc---cCce-EEEecc-----------
Confidence 999999999999999999999999999999876421 1111 10 1111 222211
Q ss_pred CCCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
..+.+.+... ..........++++++|+|||||||.||||+++|+++..+.. .....++++++|+++..+|++
T Consensus 130 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~ 203 (529)
T PRK07867 130 -----PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGV-MLAQRFGLGPDDVCYVSMPLF 203 (529)
T ss_pred -----ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHH-HHHHhhCCCcccEEEEecchh
Confidence 1122222211 111122345678999999999999999999999999765543 445568899999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|..++...++.++..|+++++.+. +++..+++.++++++|++.++|+.+..++..... .....+++|. ++||+
T Consensus 204 ~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~--~~~~~~~lr~-~~gg~ 276 (529)
T PRK07867 204 HSNAVMAGWAVALAAGASIALRRK----FSASGFLPDVRRYGATYANYVGKPLSYVLATPER--PDDADNPLRI-VYGNE 276 (529)
T ss_pred HHHHHHHHHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc--ccccccceEE-EecCC
Confidence 999877777788999999999764 4899999999999999999999999998876432 1223357884 56888
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCc-------
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGEC------- 591 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~------- 591 (635)
++++. ..+|.+.++ .++++.||+||+++..... + ...++++|+|+++ ++|+| +++++++.|+
T Consensus 277 ~~~~~-~~~~~~~~g---~~l~~~YG~TE~~~~~~~~-~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~ 346 (529)
T PRK07867 277 GAPGD-IARFARRFG---CVVVDGFGSTEGGVAITRT-P---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLL 346 (529)
T ss_pred CChHH-HHHHHHHhC---CcEEEeecccccccccccC-C---CCCCCCcCCCCCC--EEEEECCCCCCCCCCcccccccc
Confidence 88766 467777776 7899999999988654322 1 1345789999999 78888 5789999998
Q ss_pred -----ceEEEE-ecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 592 -----SGYLCI-KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 592 -----~GEL~i-~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.|||++ +| ++++.||+++|+.+.+.| .+|||+|||+|++
T Consensus 347 ~~~~~~Gel~i~~g--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~ 391 (529)
T PRK07867 347 NADEAIGELVNTAG--PGGFEGYYNDPEADAERM---RGGVYWSGDLAYR 391 (529)
T ss_pred ccCCcceEEEEecC--CcccccccCChHhhhhhh---cCCeEeeccEEEE
Confidence 899999 99 999999999999988776 3789999999975
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=421.27 Aligned_cols=389 Identities=21% Similarity=0.266 Sum_probs=294.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ ++++|+++|+++.+ +.+||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+++
T Consensus 38 tl~~~l~~~-a~~~p~~~Ai~~~~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~ 110 (600)
T PRK08279 38 SLGDVFEEA-AARHPDRPALLFED------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKL 110 (600)
T ss_pred cHHHHHHHH-HHhCCCCcEEEeCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 478899988 89999999999754 67999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++.+++++++++++|+++... ..+...... ......++..+.... ..
T Consensus 111 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~------~~ 171 (600)
T PRK08279 111 GAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELV---------EAFEEARAD----LARPPRLWVAGGDTL------DD 171 (600)
T ss_pred CcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHhhh----hcccceEEEecCccc------cc
Confidence 99999999999999999999999999999986532 112211111 111122222221100 00
Q ss_pred CCCCcchhhhhcCcCCC--CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCc
Q 006688 361 QDGRDIWWQDVVPKYPT--KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l 438 (635)
......+.+....... ........++++++|+|||||||.||||+++|++++.+... ....++++++|++++.+|+
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~l~~~d~~l~~~pl 249 (600)
T PRK08279 172 -PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGG-FGGLLRLTPDDVLYCCLPL 249 (600)
T ss_pred -cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHH-HHHhcCCCCCcEEEEecCc
Confidence 0000011111111111 11123346789999999999999999999999997766544 4456899999999999999
Q ss_pred ceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecC
Q 006688 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (635)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (635)
+|.+++...++.+|..|+++++.+. +++..+++.|+++++|++.++|++++.++..... ......++|.+ +|
T Consensus 250 ~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~--~~~~~~~l~~~--~g 321 (600)
T PRK08279 250 YHNTGGTVAWSSVLAAGATLALRRK----FSASRFWDDVRRYRATAFQYIGELCRYLLNQPPK--PTDRDHRLRLM--IG 321 (600)
T ss_pred hhhhhHHHHHHHHHhcCcEEEEcCC----CCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCC--ccccCcceeEE--ec
Confidence 9999987777778889999998764 5999999999999999999999999999876432 22234567754 47
Q ss_pred CCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCC----CCe---------EEEEcCCC-
Q 006688 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF----GVQ---------PVIVDEKG- 584 (635)
Q Consensus 519 e~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~----g~~---------v~IvD~~g- 584 (635)
+.++++++++|.+.++ ...++|.||+||++...+.. ...++++|++.+ +.. ..|.|.++
T Consensus 322 ~~l~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 394 (600)
T PRK08279 322 NGLRPDIWDEFQQRFG--IPRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGR 394 (600)
T ss_pred CCCCHHHHHHHHHHhC--cceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCc
Confidence 8899999999999998 35699999999987543321 134556777666 333 23444333
Q ss_pred -CccCCCcceEEE--EecCCCcchhhhcCChhHHHHhhcC----CCCceEEcCCeEec
Q 006688 585 -VEIEGECSGYLC--IKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSR 635 (635)
Q Consensus 585 -~~vp~g~~GEL~--i~g~~~~v~~GY~~~~e~t~~~~~~----~~~g~yrTGDlgr~ 635 (635)
.++++|+.|||+ |+| ++++.|| ++++.+.+.|+. +.++||+|||+|++
T Consensus 395 ~~~~~~g~~Gel~~~i~~--~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~ 449 (600)
T PRK08279 395 CIKVKPGEVGLLIGRITD--RGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRD 449 (600)
T ss_pred cccCCCCCceeEEEEecC--ccccccc-CCchhhHHHHhhcccCCCCceEeecceEEE
Confidence 367899999999 678 8999999 899888777643 34679999999985
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=408.64 Aligned_cols=394 Identities=20% Similarity=0.242 Sum_probs=299.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +.+||.||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 5 l~~~~~~~-a~~~p~~~a~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G 77 (533)
T PRK07798 5 IADLFEAV-ADAVPDRVALVCGD------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77 (533)
T ss_pred HHHHHHHH-HHhCCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 67889998 89999999999754 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++++++... ..+.+ .....+..+.++.+++.... ...
T Consensus 78 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~ 139 (533)
T PRK07798 78 AVPVNVNYRYVEDELRYLLDDSDAVALVYEREFA---------PRVAE----VLPRLPKLRTLVVVEDGSGN-----DLL 139 (533)
T ss_pred eEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhH---------HHHHH----HhccCCCccEEEEecCCccc-----ccC
Confidence 9999999999999999999999999999976531 11111 11222445556655543210 000
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH--------HhcCC------C
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--------YAFDY------K 427 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~--------~~~~~------~ 427 (635)
.....+.+.+........... ...+.++|+|||||||.||+|+++|++++.+...... ..+.+ .
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (533)
T PRK07798 140 -PGAVDYEDALAAGSPERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAG 217 (533)
T ss_pred -CccccHHHHHhccCCcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCC
Confidence 012234444433222111112 2345679999999999999999999997654332111 11122 5
Q ss_pred CCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHH-HHHhcCccccccC
Q 006688 428 PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR-SLMRDGNEYVTRY 506 (635)
Q Consensus 428 ~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~-~l~~~~~~~~~~~ 506 (635)
.+++++..+|+.|+.++ +.++.+|..|+++++.+.. . +++..+++.|+++++|++.++|..+. .+.+... .....
T Consensus 218 ~~~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~-~-~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~ 293 (533)
T PRK07798 218 PGMRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDV-R-FDADEVWRTIEREKVNVITIVGDAMARPLLDALE-ARGPY 293 (533)
T ss_pred CCceEEEecchhhhhhH-HHHHHHHhcCceEEEecCC-C-cCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-ccccC
Confidence 67899999999999996 5889999999999999843 2 49999999999999999999987554 3333221 11244
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCC--CCCCCCeEEEEcCCC
Q 006688 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT--FPFFGVQPVIVDEKG 584 (635)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG--~pl~g~~v~IvD~~g 584 (635)
+++++|.+++||+++++++.++|.+.++ +..+++.||+||++......... .....| ++.++..++|+|+++
T Consensus 294 ~~~~l~~i~~gG~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~~~~ 367 (533)
T PRK07798 294 DLSSLFAIASGGALFSPSVKEALLELLP--NVVLTDSIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLDEDG 367 (533)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHcC--CCeEEeeecccccccccccCCCC----CCccCCCCccCCCceEEEECCCC
Confidence 6789999999999999999999999886 47899999999986544432111 112334 888999999999999
Q ss_pred CccCCCcc--eEEEEecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 585 VEIEGECS--GYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~--GEL~i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
++++.|+. |||+ ++ +.++.||+++++.+.+.|.. +.++||+|||+|++
T Consensus 368 ~~~~~g~~~~g~l~-~~--~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~ 418 (533)
T PRK07798 368 NPVEPGSGEIGWIA-RR--GHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARV 418 (533)
T ss_pred CCCCCCCCCeeEEE-ee--cCccccccCChhhhHHhhccCCCCceEEcCcEEEE
Confidence 99999887 7666 55 57899999999999888753 23459999999985
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=448.68 Aligned_cols=387 Identities=20% Similarity=0.228 Sum_probs=296.2
Q ss_pred HHHHHhhhhhccCC-CceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLG-DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~p-d~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.+.|+++ ++++| +++|+.+. ..+++||+||+++++++|+.|++ |+++||+|+++++|+++++++++||+++
T Consensus 633 ~~~~l~~~-~~~~~~~~~ai~~~-----~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~ 705 (1140)
T PRK06814 633 LFEALIEA-AKIHGFKKLAVEDP-----VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSA 705 (1140)
T ss_pred HHHHHHHH-HHHcCCCCeEeECC-----CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHC
Confidence 55667776 66775 66777642 23679999999999999999976 9999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+||.++.+++.+++++++++++|+++......+ .....+.. .....++.+++... ...
T Consensus 706 G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------~~~~~~~~----~~~~~~i~~~~~~~----~~~- 769 (1140)
T PRK06814 706 GRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR-------LGPLIEAL----EFGIRIIYLEDVRA----QIG- 769 (1140)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhc-------chhHHHHh----ccCceEEEehHhhc----cCC-
Confidence 999999999999999999999999999999865422110 00111111 12233444442210 000
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
....+.+......+..+.....++|+++|+|||||||.||||+++|++++.+. ......++++++|++++.+|++|
T Consensus 770 ---~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~h 845 (1140)
T PRK06814 770 ---LADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANR-AQVAARIDFSPEDKVFNALPVFH 845 (1140)
T ss_pred ---hHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHH-HHHHHhhCCCCcCEEEEecchHH
Confidence 00001111111111111113578999999999999999999999999976655 44445688999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++...++.++..|+++++.+.. .+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||+
T Consensus 846 ~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~----~~~~~~~lr~v~~gg~~ 918 (1140)
T PRK06814 846 SFGLTGGLVLPLLSGVKVFLYPSP---LHYRIIPELIYDTNATILFGTDTFLNGYARYA----HPYDFRSLRYVFAGAEK 918 (1140)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCc---ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc----ccccccceeEEEEcCCc
Confidence 999777888999999999998642 36678899999999999999999999987753 34567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++.+.+.+.++ .+++|.||+||++..+....+. ..+++++|+|+||++++++|..+ .|+.|||+|+|
T Consensus 919 l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~~~----~~~~Gel~v~g- 988 (1140)
T PRK06814 919 VKEETRQTWMEKFG---IRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPVPG----IDEGGRLFVRG- 988 (1140)
T ss_pred CCHHHHHHHHHHhC---CcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeecCC----CCCceEEEEeC-
Confidence 99999999999886 7899999999998765543322 24567899999999999987543 36789999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++.||+++++..... ...+|||+|||+||+
T Consensus 989 -~~~~~gY~~~~~~~~~~--~~~~g~~~TGDl~~~ 1020 (1140)
T PRK06814 989 -PNVMLGYLRAENPGVLE--PPADGWYDTGDIVTI 1020 (1140)
T ss_pred -CCcchhhcCCCCCCccc--cCCCCeEecCCEEEE
Confidence 99999999987533221 124789999999985
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=384.17 Aligned_cols=385 Identities=18% Similarity=0.222 Sum_probs=295.7
Q ss_pred CccEEEeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCe
Q 006688 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDA-VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPK 306 (635)
Q Consensus 228 ~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~-Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~ 306 (635)
+....+||.|+.+++.++|+.|.+.|++++++ |+|+++.+.+|+.+.+||++.+...|.+...+..+.+.+-|..++++
T Consensus 85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~ 164 (678)
T KOG1180|consen 85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST 164 (678)
T ss_pred cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence 34578999999999999999999999997776 99999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccc-cccccc---cCCCCcchhhhhcCcCCCC-CCc
Q 006688 307 VVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM-TRENTK---WQDGRDIWWQDVVPKYPTK-CEV 381 (635)
Q Consensus 307 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~ 381 (635)
.|||+.+... . +.........++++|.++..+.. ...... ..+.....++++++-.... .++
T Consensus 165 ~i~T~~~LL~---------k----l~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~ 231 (678)
T KOG1180|consen 165 AIFTDSELLP---------K----LKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPP 231 (678)
T ss_pred EEEeCHHHHH---------H----HHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCC
Confidence 9999876421 1 11122334788999998853210 111111 1122345566665433222 334
Q ss_pred ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 382 ~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.+..|+|+|+|||||||||.||||+++|+|+++...........+.+.|+++.++|+.|+.-+.+++ .++..|+++-..
T Consensus 232 ~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~-~~ft~G~~iGY~ 310 (678)
T KOG1180|consen 232 HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAEL-VCFTWGGRIGYS 310 (678)
T ss_pred CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHH-HHHhhCCEeecC
Confidence 4458899999999999999999999999998877766666556889999999999999999988885 479999998876
Q ss_pred cCCCCCCChh-HH----HHHHHHcCCcEEEecHHHHHHHHhcCccc----------------------c-----------
Q 006688 462 EGAPTYPDSG-RS----WDIVDKYKVTIFYTAPTLVRSLMRDGNEY----------------------V----------- 503 (635)
Q Consensus 462 ~~~~~~~d~~-~l----~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~----------------------~----------- 503 (635)
+..... |.. .+ ---+...++|++..+|+++.++.+...+. .
T Consensus 311 S~~TLt-dts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld 389 (678)
T KOG1180|consen 311 SPLTLT-DTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLD 389 (678)
T ss_pred Ccceec-ccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHH
Confidence 542221 211 11 11234579999999999998775432100 0
Q ss_pred -------ccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCe
Q 006688 504 -------TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 576 (635)
Q Consensus 504 -------~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~ 576 (635)
...--.+||++++||+||+++..+.+.-.+. +++..+||.||+++..+...+.+ ...+.+|-|++.++
T Consensus 390 ~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C---~Pv~qGYGLTEtca~~tv~e~~d--~~~g~vG~pl~c~e 464 (678)
T KOG1180|consen 390 ALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC---CPVLQGYGLTETCAAATVLEPED--FSTGRVGAPLPCCE 464 (678)
T ss_pred HHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc---ccccccccccchhcccEecChhh--cccccccCCccceE
Confidence 0001157999999999999999999988886 78999999999998776654433 45568999999999
Q ss_pred EEEEc-CCCCccCCC--cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCc--eEEcCCeEec
Q 006688 577 PVIVD-EKGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSR 635 (635)
Q Consensus 577 v~IvD-~~g~~vp~g--~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g--~yrTGDlgr~ 635 (635)
++++| ++|---+-+ -.|||+|+| +++..|||+|||+|++.|.. .+| ||+|||+|+|
T Consensus 465 iKLvdw~EgGY~~~~~PPrGEI~i~G--~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~ 525 (678)
T KOG1180|consen 465 IKLVDWEEGGYFAKNKPPRGEILIGG--PNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEF 525 (678)
T ss_pred EEEEEhhhcCccCCCCCCCceEEecC--CccChhhhCChhhhhhhcee-cCCcEEEecccccee
Confidence 99999 443322211 279999999 99999999999999999986 577 9999999986
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=404.12 Aligned_cols=365 Identities=23% Similarity=0.272 Sum_probs=287.2
Q ss_pred cEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEE
Q 006688 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (635)
Q Consensus 230 ~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii 309 (635)
.+.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus 9 ~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii 88 (502)
T PRK08276 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLI 88 (502)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccCCcccchHHHHHHHHHHhhhcCC-CccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCC
Q 006688 310 TSNAVKRGPKAIHLKDIVDAALDECAKSGI-SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388 (635)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 388 (635)
+++.... .+.+..+. .. .++.++..+... .....+.+...... .......++
T Consensus 89 ~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~ 141 (502)
T PRK08276 89 VSAALAD---------TAAELAAE----LPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP---DTPIADETA 141 (502)
T ss_pred Eccchhh---------HHHHHhhh----ccccccEEEEeCCCC-----------CccccHHHHHhcCC---CCCCCCCCc
Confidence 9865421 11111111 12 334444332110 00112222222111 111234567
Q ss_pred cEEEEEccCCCCCCcEEEEccchHHHHH-----HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecC
Q 006688 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHT-----ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (635)
Q Consensus 389 ~a~Ii~TSGTTG~PKgV~~th~~l~~~~-----~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~ 463 (635)
.++++|||||||.||+|+++|.++.... .......+....++++++..|++|..++. ..+.++..|+++++.+.
T Consensus 142 ~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~ 220 (502)
T PRK08276 142 GADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEK 220 (502)
T ss_pred ceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCC
Confidence 8999999999999999999988754321 11111122234678999999999988864 44578999999998764
Q ss_pred CCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccc
Q 006688 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543 (635)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~ 543 (635)
+++..+++.++++++|++.++|+++..+++.........+++++|.+++||++++.++++++.+.++ ..+++.
T Consensus 221 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~---~~~~~~ 293 (502)
T PRK08276 221 ----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG---PIIHEY 293 (502)
T ss_pred ----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC---cHhhhh
Confidence 4899999999999999999999999999887543333456889999999999999999999999887 679999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCC
Q 006688 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (635)
Q Consensus 544 YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~ 623 (635)
||+||++.+++.... .....++++|+|+ ++.++|+|+++++++.|+.|||+|+| +.++.||+++++.+.+.+..
T Consensus 294 yG~tE~~~~~~~~~~-~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~-- 367 (502)
T PRK08276 294 YASSEGGGVTVITSE-DWLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEM--DGYPFEYHNDPEKTAAARNP-- 367 (502)
T ss_pred cccccccceeEecCc-cccccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEEC--CCccchhcCCHHHHHHHhcC--
Confidence 999999875544322 2234567899999 88999999999999999999999999 88999999999999888764
Q ss_pred CceEEcCCeEec
Q 006688 624 PGYYFTGDGCSR 635 (635)
Q Consensus 624 ~g~yrTGDlgr~ 635 (635)
+|||+|||+|++
T Consensus 368 ~~~~~TGD~~~~ 379 (502)
T PRK08276 368 HGWVTVGDVGYL 379 (502)
T ss_pred CCceeecceEEE
Confidence 599999999985
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=430.15 Aligned_cols=422 Identities=16% Similarity=0.146 Sum_probs=296.8
Q ss_pred HHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEEEEc
Q 006688 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEA 224 (635)
Q Consensus 145 ~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~ 224 (635)
..+-+..++.+|+.++.++.. +...+.. ++..++ .... .+...+.++|+++ ++++|+++|+++.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~--~~~~---------~~~~sl~~ll~~~-a~~~pd~~Al~~~~ 470 (994)
T PRK07868 406 LARGAADAAVAANRSVRTLAV-ETARTLP--RLARLG--QIND---------HTRISLGRIIAEQ-ARDAPKGEFLLFDG 470 (994)
T ss_pred HhhhHHHHHHHhhhhhHHHHH-HHHHhhh--hHHHhh--hcCC---------CCCccHHHHHHHH-HHHCCCCeEEEeCC
Confidence 344556778899999998854 2222222 122111 1111 1223478999998 89999999999754
Q ss_pred CCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcC
Q 006688 225 NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCK 304 (635)
Q Consensus 225 ~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~ 304 (635)
+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|. +++.+++++++
T Consensus 471 ------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~ 541 (994)
T PRK07868 471 ------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGG 541 (994)
T ss_pred ------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccC
Confidence 689999999999999999999999999999999999999999999999999999999985 68999999999
Q ss_pred CeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCC-CCcchhhhhcCcCCC---CCC
Q 006688 305 PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD-GRDIWWQDVVPKYPT---KCE 380 (635)
Q Consensus 305 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~ 380 (635)
+++||+++.... ... . ....+++++..... ...... .....+.+....... ...
T Consensus 542 ~~~li~~~~~~~------------~~~-~------~~~~iiv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (994)
T PRK07868 542 VTEIITDPTNLE------------AAR-Q------LPGRVLVLGGGESR---DLDLPDDADVIDMEKIDPDAVELPGWYR 599 (994)
T ss_pred CeEEEEChHHHH------------HHH-h------cCceEEEecCCccc---cccCCcchhhhhhhhcCcccccCCcccC
Confidence 999999754311 110 0 11344544321100 000000 000111111110000 001
Q ss_pred cccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 381 ~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
.....++|+|||+|| ||||.||++.++|.+...... .....++++++|++++.+|++|+.++...++.++..|+++++
T Consensus 600 ~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~-~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl 677 (994)
T PRK07868 600 PNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAF-GTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIAL 677 (994)
T ss_pred CCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHH-hhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEe
Confidence 112236899999999 578888888888876544332 233457889999999999999999965444445555555555
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccc
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l 540 (635)
.++ ++++.+++.|++++||+++++|++++.|++... ....++++||.++ |+.++++++++|.+.++ .+++
T Consensus 678 ~~~----~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~--~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~--~~~l 747 (994)
T PRK07868 678 SRG----LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA--FVLHGNHPVRLFI--GSGMPTGLWERVVEAFA--PAHV 747 (994)
T ss_pred cCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC--CccCCCCceEEEe--cCCCCHHHHHHHHHHhC--chhe
Confidence 443 599999999999999999999999999987643 2334567899876 34599999999999997 4789
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCC-eEEEE-----------cCCC--CccCCCcceEEEEecCCCcchh
Q 006688 541 SDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIV-----------DEKG--VEIEGECSGYLCIKSSWPGAFR 606 (635)
Q Consensus 541 ~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~-~v~Iv-----------D~~g--~~vp~g~~GEL~i~g~~~~v~~ 606 (635)
+|.||+||++.... ... ..+++++|+|+||+ +++|. |++| ++++.|++|||+++| ++.
T Consensus 748 ~~~YG~TE~~~~~~-~~~---~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~--~~~-- 819 (994)
T PRK07868 748 VEFFATTDGQAVLA-NVS---GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARA--RGP-- 819 (994)
T ss_pred eeeeeccccccccc-ccC---CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEec--CCC--
Confidence 99999999875433 221 24668999999998 66653 5666 678899999999999 543
Q ss_pred hhcCChhHHHHh-hcCCCCceEEcCCeEec
Q 006688 607 TLYGDHERYETT-YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 607 GY~~~~e~t~~~-~~~~~~g~yrTGDlgr~ 635 (635)
+ +|+.+... +|.+.+|||+|||+||+
T Consensus 820 --~-~p~~t~~~~~~~~~dgw~~TGDlg~~ 846 (994)
T PRK07868 820 --I-DPTASVKRGVFAPADTWISTEYLFRR 846 (994)
T ss_pred --C-ChhhhhHhcccccCCEEEeccceEEE
Confidence 3 46554332 34435789999999985
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=411.00 Aligned_cols=384 Identities=18% Similarity=0.128 Sum_probs=292.6
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+.+... +...|+.+|+...+ ..+.+||.||+++++++|++|++.|+++||+|+|+++|+++++++++||+++|
T Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~----~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g 78 (545)
T PRK07768 4 FTEKMYAN-ARTSPRGMVTGEPD----APVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRG 78 (545)
T ss_pred HHHHHHHH-hhCCCcceEEecCC----CceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 45656666 88899999997644 34789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHH-------HHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc
Q 006688 282 AVHSVVFAGFSSDSL-------AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (635)
Q Consensus 282 a~~vpld~~~~~~~l-------~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (635)
++++|+++..+.+++ ..+++.++++.+++++..... . ..... ..+ .++.
T Consensus 79 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~----~~~~~--~~~-~~~~-------- 134 (545)
T PRK07768 79 ASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAA---------A----PVLEE--KGI-RVLT-------- 134 (545)
T ss_pred ccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhh---------h----hhhcc--cCC-ceee--------
Confidence 999999998886554 456777899999987654211 0 00000 000 1111
Q ss_pred ccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCC-cEEE
Q 006688 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS-DVYW 433 (635)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~-d~~l 433 (635)
++++...... ......++++++|+|||||||.||||+++|++++... ......+++.++ |+++
T Consensus 135 -------------~~~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~-~~~~~~~~~~~~~d~~~ 198 (545)
T PRK07768 135 -------------VADLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANA-EAMFVAAEFDVETDVMV 198 (545)
T ss_pred -------------hhhhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHH-HHHHHhcCCCCCCceeE
Confidence 1222221111 1223467999999999999999999999999976654 444456788876 8999
Q ss_pred EeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc--cccCCCCCc
Q 006688 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY--VTRYSRKSL 511 (635)
Q Consensus 434 ~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~~~l~sL 511 (635)
+.+|++|+.++...++.++..|+++++.+......++..+.+++++++++++..+|.++..+.+..... ....++++|
T Consensus 199 ~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 278 (545)
T PRK07768 199 SWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSL 278 (545)
T ss_pred EeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchhe
Confidence 999999999977667788999999998864322237888999999999999988888877766432110 113567899
Q ss_pred eEEEecCCCCCHHHHHHHHHH---hCCCCcccccccccccccccccccCCCC------------------------CCCC
Q 006688 512 RVLGSVGEPINPSAWRWFFNV---VGDSRCPISDTWWQTETGGFMITPLPGA------------------------WPQK 564 (635)
Q Consensus 512 r~v~~gGe~l~~~l~~~~~~~---~~~~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~ 564 (635)
|.++++|+++++++.+++.+. ++.+...+++.||+||++..++...... ....
T Consensus 279 r~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (545)
T PRK07768 279 RFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRR 358 (545)
T ss_pred eeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcce
Confidence 999999999999999998874 4432346999999999986543321110 0123
Q ss_pred CCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 565 ~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|+|+++++++|+|+++++++.|+.|||+|+| +.+++||++++... +.+. .+|||+|||+|++
T Consensus 359 ~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~-~~~~--~~g~~~TGDl~~~ 424 (545)
T PRK07768 359 LATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRG--ESVTPGYLTMDGFI-PAQD--ADGWLDTGDLGYL 424 (545)
T ss_pred EEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEcc--CcccccccCCCCCc-cccc--CCCeeeccceEEE
Confidence 46899999999999999999999999999999999 89999999865433 3322 3789999999985
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=401.52 Aligned_cols=372 Identities=20% Similarity=0.218 Sum_probs=285.5
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 006688 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310 (635)
Q Consensus 231 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~ 310 (635)
+.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc---c--cccccCCCCcchhhhhcCcCCCCCCcccCC
Q 006688 311 SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT---R--ENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385 (635)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (635)
+..... .+.+.. +....++......... . ............+.+...... +.....
T Consensus 90 ~~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 150 (509)
T PRK12406 90 HADLLH---------GLASAL-------PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGPP 150 (509)
T ss_pred ccchhh---------hhhhhh-------hcccceeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCCC
Confidence 765421 111100 0111111111100000 0 000000111223333332211 112335
Q ss_pred CCCcEEEEEccCCCCCCcEEEEccchHHHHH--HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecC
Q 006688 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (635)
Q Consensus 386 ~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~--~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~ 463 (635)
++++++++|||||||.||+|+++|....... .......+++.++++++...|++|..+..+ .+.++..|+++++.+.
T Consensus 151 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~ 229 (509)
T PRK12406 151 VPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPR 229 (509)
T ss_pred CCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccC
Confidence 7899999999999999999999876532221 222334678899999999999999887544 4557889999998764
Q ss_pred CCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccc
Q 006688 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543 (635)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~ 543 (635)
++++.+++.++++++|++..+|+++..|++.........+++++|.+++||+++++++++++.+.++ ..+++.
T Consensus 230 ----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~---~~~~~~ 302 (509)
T PRK12406 230 ----FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG---PVIYEY 302 (509)
T ss_pred ----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC---CcEEee
Confidence 4899999999999999999999999999876443233456789999999999999999999999887 679999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchh-hhcCChhHHHHhhcCC
Q 006688 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR-TLYGDHERYETTYFKP 622 (635)
Q Consensus 544 YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~-GY~~~~e~t~~~~~~~ 622 (635)
||+||++.+++.... ....+++++|+|+++++++|+|+++++++.|+.|||+++| ++++. ||+++++.+...+
T Consensus 303 YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~~~y~~~~~~~~~~~--- 376 (509)
T PRK12406 303 YGSTESGAVTFATSE-DALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRI--AGNPDFTYHNKPEKRAEID--- 376 (509)
T ss_pred ccccccCceEecCcc-cccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEEC--CccccccccCCchhccccc---
Confidence 999999875543322 2234567899999999999999999999999999999999 77765 9999998876543
Q ss_pred CCceEEcCCeEec
Q 006688 623 FPGYYFTGDGCSR 635 (635)
Q Consensus 623 ~~g~yrTGDlgr~ 635 (635)
.+|||+|||+|++
T Consensus 377 ~~~~~~TGD~~~~ 389 (509)
T PRK12406 377 RGGFITSGDVGYL 389 (509)
T ss_pred CCCCeEEccEEEE
Confidence 3789999999975
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=389.05 Aligned_cols=354 Identities=22% Similarity=0.243 Sum_probs=287.0
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeC
Q 006688 234 TYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312 (635)
Q Consensus 234 TY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~ 312 (635)
||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcC-CCCCCcccCCCCCcEE
Q 006688 313 AVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLF 391 (635)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~ 391 (635)
........ ....++.++... ....... ..........++++++
T Consensus 81 ~~~~~~~~-------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 124 (408)
T TIGR01733 81 ALASRLAG-------------------LVLPIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAY 124 (408)
T ss_pred chhhhccc-------------------cCCceEEechhh-----------------hhhcccccccccccCCCCCCCcEE
Confidence 64321100 000111111100 0000000 0001111145789999
Q ss_pred EEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChh
Q 006688 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471 (635)
Q Consensus 392 Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~ 471 (635)
++|||||||.||+|.++|++++... ......+.+.++|+++...|++|..++ +.++.++..|+++++.+..... .+.
T Consensus 125 i~~TSGTtG~pK~v~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~-~~~ 201 (408)
T TIGR01733 125 VIYTSGSTGRPKGVVVTHRSLVNLL-AWLARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEER-DAA 201 (408)
T ss_pred EEEcCCCCCCCCEEEeccHHHHHHH-HHHHHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhcc-CHH
Confidence 9999999999999999999976655 444457889999999999999999885 6789999999999998865432 478
Q ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccc
Q 006688 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551 (635)
Q Consensus 472 ~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~ 551 (635)
.+.+.++++++|.+.++|.+++.|++... ..+++||.+++||+++++++++.|.+.++ +..+++.||+||++.
T Consensus 202 ~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~g~ 274 (408)
T TIGR01733 202 LLAALIAEHPVTVLNLTPSLLALLAAALP-----PALASLRLVILGGEALTPALVDRWRARGP--GARLINLYGPTETTV 274 (408)
T ss_pred HHHHHHHHcCceEEEeCHHHHHHHHHhhh-----hcccCceEEEEeCccCCHHHHHHHHHhCC--CcEEEecccCCceEE
Confidence 99999999999999999999999988642 45789999999999999999999999987 478999999999987
Q ss_pred ccccc-CCCCCCC--CCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC----CCC
Q 006688 552 FMITP-LPGAWPQ--KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFP 624 (635)
Q Consensus 552 ~~~~~-~~~~~~~--~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~----~~~ 624 (635)
.+... ....... ++.++|+|+++++++|+|+++++++.|+.|||+|+| +.++.||+++++.+.+.|.. ..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~ 352 (408)
T TIGR01733 275 WSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGG--PGVARGYLNRPELTAERFVPDPFAGGD 352 (408)
T ss_pred EEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecC--ccccccccCChhhhhcceeeCCCCCCC
Confidence 66422 1111111 277899999999999999999999999999999999 99999999999988877643 223
Q ss_pred c--eEEcCCeEec
Q 006688 625 G--YYFTGDGCSR 635 (635)
Q Consensus 625 g--~yrTGDlgr~ 635 (635)
| ||+|||+|++
T Consensus 353 ~~~~~~TGDl~~~ 365 (408)
T TIGR01733 353 GARLYRTGDLVRY 365 (408)
T ss_pred CceEEECCceEEE
Confidence 4 9999999985
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=397.96 Aligned_cols=393 Identities=18% Similarity=0.179 Sum_probs=289.2
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
..++|++. ++.+|+++|+++.+ ..+||+||.++++++|..|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 20 ~~~~~~~~-~~~~~~~~a~~~~~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 92 (545)
T PRK08162 20 PLSFLERA-AEVYPDRPAVIHGD------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAG 92 (545)
T ss_pred HHHHHHHH-HHHCCCCeEEEECC------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 45778887 89999999999754 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++..++++++++.++++.... ..+.+..... +. ...+.++...+.. ....
T Consensus 93 ~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~-~~~~~~~~~~~~~---~~~~ 155 (545)
T PRK08162 93 AVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFA---------EVAREALALL----PG-PKPLVIDVDDPEY---PGGR 155 (545)
T ss_pred cEEeccccccChHHHHHHHHhCCCeEEEEccchh---------hHHHHHHhhC----CC-CceEEEecCcccc---ccCC
Confidence 9999999999999999999999999999987642 1222221111 11 1122222211000 0000
Q ss_pred CCCcchhhhhcCcCCCCCC-cccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
......+.+.......... ......+++++|+|||||||.||||+++|+++..+.... ...+++..++++++.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl~h 234 (545)
T PRK08162 156 FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-ILAWGMPKHPVYLWTLPMFH 234 (545)
T ss_pred CcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH-HHhcCCCCCCeeEeccCcHh
Confidence 0011223333322111111 112244689999999999999999999999866554443 33567888999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++...++..+ .|++.++... +++..+++.|+++++|++..+|++++.|++.... ....+.+++.++++|++
T Consensus 235 ~~~~~~~~~~~~-~~g~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~~~~g~~ 307 (545)
T PRK08162 235 CNGWCFPWTVAA-RAGTNVCLRK----VDPKLIFDLIREHGVTHYCGAPIVLSALINAPAE--WRAGIDHPVHAMVAGAA 307 (545)
T ss_pred hhhHHHHHHHHH-HccEEEEeCC----CCHHHHHHHHHHcCCeEEEechHHHHHHHhCccc--cccCCccceEEEECCCC
Confidence 888655444444 4555555443 4999999999999999999999999999876432 12234566777899999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCC-CC--------CCCCCCCCCCCCC-CCeEEEEc-CCCCccCC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GA--------WPQKPGSATFPFF-GVQPVIVD-EKGVEIEG 589 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~--------~~~~~~siG~pl~-g~~v~IvD-~~g~~vp~ 589 (635)
+++++.+.+.+. + .++++.||+||+++.+..... .. ......++|.+++ +..++|+| +++++++.
T Consensus 308 ~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~ 383 (545)
T PRK08162 308 PPAAVIAKMEEI-G---FDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA 383 (545)
T ss_pred CCHHHHHHHHHh-C---CceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCC
Confidence 999999988764 4 789999999998644332211 00 0112345677765 34688999 47888885
Q ss_pred -C-cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 590 -E-CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 590 -g-~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| +.|||+|+| +.++.||+++++.+.+.|. +|||+|||+|++
T Consensus 384 ~g~~~Gel~v~g--~~~~~gY~~~~~~~~~~~~---~g~~~TGDl~~~ 426 (545)
T PRK08162 384 DGETIGEIMFRG--NIVMKGYLKNPKATEEAFA---GGWFHTGDLAVL 426 (545)
T ss_pred CCCceeEEEEec--CcchhhhcCChhhhHHHhh---CCCcccCceEEE
Confidence 3 479999999 8899999999999988873 689999999985
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=394.44 Aligned_cols=351 Identities=24% Similarity=0.345 Sum_probs=248.9
Q ss_pred cCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccE
Q 006688 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV 343 (635)
Q Consensus 264 ~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (635)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+... .+...... .....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~-----~~~~~ 72 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALP---LYSKVVEA-----APAKA 72 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeec---chhhhhhc-----ccceE
Confidence 58999999999999999999999999999999999999999999999865321111111 11111110 11122
Q ss_pred EEEecCCccccccccccCCCCcchhhhhcCcC-------CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHH
Q 006688 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-------PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT 416 (635)
Q Consensus 344 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~ 416 (635)
++........ .... ......+.+++... ..........++|+++|+|||||||.||||+++|++++.+.
T Consensus 73 i~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~ 148 (499)
T PLN03051 73 IVLPAAGEPV---AVPL-REQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA 148 (499)
T ss_pred EEEeccCccc---CCcc-ccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence 2221111000 0000 00112233332110 00111112356899999999999999999999999976654
Q ss_pred HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHH
Q 006688 417 ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (635)
Q Consensus 417 ~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~ 496 (635)
... ...++++++|++++.+|++|+.++ +.++.+|+.|+++++.+.. +++..+++.|+++++|++.++|+++..|+
T Consensus 149 ~~~-~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~---~~~~~~~~~i~~~~vt~~~~vP~~~~~l~ 223 (499)
T PLN03051 149 SDG-WAHMDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGA---PLGRGFGKFVQDAGVTVLGLVPSIVKAWR 223 (499)
T ss_pred HHH-HHhcCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCC---CCcHHHHHHHHHhCCcEEEeCHHHHHHHH
Confidence 333 345788999999999999999985 5788899999999998642 47889999999999999999999999998
Q ss_pred hcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCe
Q 006688 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 576 (635)
Q Consensus 497 ~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~ 576 (635)
+.........++++||.+++||+++++++.+++.+.++. +.+++|.||+||++..++..... ...+++++|+|++|++
T Consensus 224 ~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~ 301 (499)
T PLN03051 224 HTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGY-YKPVIEYCGGTELASGYISSTLL-QPQAPGAFSTASLGTR 301 (499)
T ss_pred hcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccc-cceeEeeeccccccceeeccccc-CCCCCccccCCCCCce
Confidence 754211134567899999999999999999877764321 26799999999987543322211 1345678999999999
Q ss_pred EEEEcCCCCccCCC--cceEEEEecCCCcchhhhcCChhHHHHhhcCC-------CCceEEcCCeEec
Q 006688 577 PVIVDEKGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-------FPGYYFTGDGCSR 635 (635)
Q Consensus 577 v~IvD~~g~~vp~g--~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~-------~~g~yrTGDlgr~ 635 (635)
++|+|++|++++.| ++|||+|+||+.+++.|||+++. + +.|+.. ..+||||||+|++
T Consensus 302 ~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~~g~~~~~~~~~~~~~TGDlg~~ 367 (499)
T PLN03051 302 FVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KVYYKGMPMYGSKGMPLRRHGDIMKR 367 (499)
T ss_pred EEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ceeeecCCccccCCcceeecCCeEEE
Confidence 99999999999988 58999999943234689998653 3 334321 1237999999985
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=388.27 Aligned_cols=315 Identities=16% Similarity=0.130 Sum_probs=250.9
Q ss_pred EEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 006688 232 TLTYSQLLQQVCQLANYLKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310 (635)
Q Consensus 232 ~lTY~eL~~~~~~lA~~L~~~Gv-~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~ 310 (635)
-+.|+||.++++++|+.|++.|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++++++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 38999999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred eCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcE
Q 006688 311 SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390 (635)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 390 (635)
++..... . .... . . ......+++++
T Consensus 99 ~~~~~~~----------------------~------~~~~----------------------~--~---~~~~~~~~~~~ 123 (452)
T PRK07445 99 LDQLKLS----------------------H------PPPL----------------------P--S---QGILPNLETGW 123 (452)
T ss_pred cCccccc----------------------c------CCCC----------------------C--c---cccCCCCCCcE
Confidence 6543100 0 0000 0 0 00113568999
Q ss_pred EEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCCh
Q 006688 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470 (635)
Q Consensus 391 ~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~ 470 (635)
+++|||||||.||||++||++++.+.. .....+++.+ ++.+..+|++|.+|+ ..++.+|+.|+++++.+.. +.
T Consensus 124 ~i~~TSGTTG~PKgV~~t~~~l~~~~~-~~~~~~~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~----~~ 196 (452)
T PRK07445 124 IMIPTGGSSGQIRFAIHTWETLTASVQ-GFQRYFQLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYK----RL 196 (452)
T ss_pred EEEeCCCCCCCCcEEEechHHHHHHHH-HHHHHhcCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChH----hc
Confidence 999999999999999999999765543 3334566654 467889999999986 5678899999999998632 22
Q ss_pred hHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccccccc
Q 006688 471 GRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550 (635)
Q Consensus 471 ~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~ 550 (635)
........++++|++.++|++++.|++.. ...+++||.+++||+++++++.+.+.+ ++ .++++.||+||++
T Consensus 197 ~~~~~~~~~~~~t~~~~vP~~l~~l~~~~-----~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~---~~l~~~YG~TE~~ 267 (452)
T PRK07445 197 KSGQELPPNPSDFFLSLVPTQLQRLLQLR-----PQWLAQFRTILLGGAPAWPSLLEQARQ-LQ---LRLAPTYGMTETA 267 (452)
T ss_pred cchhhhhhhcCceEEEehHHHHHHHHhhC-----hhhhhcceEEEECCccCCHHHHHHHHh-cC---CeEecCcchhhhc
Confidence 22233445789999999999999998732 235689999999999999999988765 34 7899999999987
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcC
Q 006688 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630 (635)
Q Consensus 551 ~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTG 630 (635)
..++...+........++|+|+||++++|+ .|+.|||+|+| ++++.||++++. ..+|||+||
T Consensus 268 ~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~--------~g~~Gel~v~g--~~~~~gY~~~~~--------~~~g~~~TG 329 (452)
T PRK07445 268 SQIATLKPDDFLAGNNSSGQVLPHAQITIP--------ANQTGNITIQA--QSLALGYYPQIL--------DSQGIFETD 329 (452)
T ss_pred ccccccCchhhccCCCcCCccCCCCeEEEc--------CCCcceEEEeC--CccchhhcCCcc--------CCCCEEECC
Confidence 654433322222345689999999999998 46789999999 899999998642 137899999
Q ss_pred CeEec
Q 006688 631 DGCSR 635 (635)
Q Consensus 631 Dlgr~ 635 (635)
|+|++
T Consensus 330 Dl~~~ 334 (452)
T PRK07445 330 DLGYL 334 (452)
T ss_pred CEEEE
Confidence 99985
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=387.86 Aligned_cols=333 Identities=17% Similarity=0.118 Sum_probs=269.6
Q ss_pred hhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEe
Q 006688 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 286 (635)
Q Consensus 207 ~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vp 286 (635)
.++ ++++|+++|++..+ +.+||+||.++++++|..|++.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 10 ~~~-a~~~~~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 10 RHW-AQVRPQAIALRLND------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP 82 (458)
T ss_pred HHH-HHhCCCceeeecCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence 344 78899999999543 68999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcc
Q 006688 287 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDI 366 (635)
Q Consensus 287 ld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 366 (635)
+++..+.+++..++++++++++++++..... . .+.... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~-----------~~~~~~-~------------------- 121 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVLEGENTF----------S-----------ALTSLH-L------------------- 121 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCcccch----------h-----------hccccc-c-------------------
Confidence 9999999999999999999999987653210 0 000000 0
Q ss_pred hhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhH
Q 006688 367 WWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446 (635)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~ 446 (635)
.. ..........++++++++|||||||.||||+++|++++.+... ....+++.++|+++...|++|.+++ .
T Consensus 122 --~~-----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~-~ 192 (458)
T PRK09029 122 --QL-----VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEG-VLSLMPFTAQDSWLLSLPLFHVSGQ-G 192 (458)
T ss_pred --cc-----ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHH-HhhcCCCCccceEEEecCcHhhhhh-H
Confidence 00 0001112346789999999999999999999999997765543 4456889999999999999999986 4
Q ss_pred HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHH
Q 006688 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAW 526 (635)
Q Consensus 447 ~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~ 526 (635)
.++.+|..|+++++.+. ..+++.+. ++|.+..+|+++..|+..... ..++|.+++||+++++++.
T Consensus 193 ~~~~~l~~G~~v~~~~~-------~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~------~~~l~~i~~gG~~~~~~~~ 257 (458)
T PRK09029 193 IVWRWLYAGATLVVRDK-------QPLEQALA--GCTHASLVPTQLWRLLDNRSE------PLSLKAVLLGGAAIPVELT 257 (458)
T ss_pred HHHHHHhCCceEEeCCh-------HHHHHHHh--hceeeecChHHHHHHHhcccc------CCcceEEEECCCCCCHHHH
Confidence 56778999999998652 45667774 899999999999999876431 3579999999999999999
Q ss_pred HHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchh
Q 006688 527 RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606 (635)
Q Consensus 527 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~ 606 (635)
+.+.+ ++ .++++.||+||++...+.... ....++|+|+++++++|+| |||+|+| +.++.
T Consensus 258 ~~~~~-~g---~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~-----------gel~v~g--~~~~~ 316 (458)
T PRK09029 258 EQAEQ-QG---IRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD-----------GEIWLRG--ASLAL 316 (458)
T ss_pred HHHHH-cC---CcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC-----------CEEEEec--Cceee
Confidence 98875 45 789999999999865443221 1234699999999999986 8999999 89999
Q ss_pred hhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 607 TLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 607 GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+++++.+... ..+|||+|||+|++
T Consensus 317 gY~~~~~~~~~~---~~~~~~~TGD~~~~ 342 (458)
T PRK09029 317 GYWRQGQLVPLV---NDEGWFATRDRGEW 342 (458)
T ss_pred eeecCccccccc---cCCCccCCCCcEEE
Confidence 999999877432 24789999999985
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=376.12 Aligned_cols=329 Identities=20% Similarity=0.270 Sum_probs=264.4
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 234 TY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEE
Q 006688 314 VKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393 (635)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii 393 (635)
.... .. ....+.... .... ...........+++++++
T Consensus 81 ~~~~--~~---------------------~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~i~ 117 (436)
T TIGR01923 81 LEEK--DF---------------------QADSLDRIE-------------------AAGR-YETSLSASFNMDQIATLM 117 (436)
T ss_pred cccc--ce---------------------eecchHhhh-------------------hccc-ccccccccCCcCceEEEE
Confidence 3210 00 000000000 0000 000112234578999999
Q ss_pred EccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHH
Q 006688 394 YTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473 (635)
Q Consensus 394 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l 473 (635)
|||||||.||+|+++|+++..+.. .....++++++|+++..+|+.|..++ ..++.++..|+++++.+. ...+
T Consensus 118 ~TSGtTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~------~~~~ 189 (436)
T TIGR01923 118 FTSGTTGKPKAVPHTFRNHYASAV-GSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDK------FNQL 189 (436)
T ss_pred eCCCCCCCCcEEEEehHHHHHHHH-HHHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecch------HHHH
Confidence 999999999999999999766554 44457899999999999999998885 567899999999999864 2489
Q ss_pred HHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccc
Q 006688 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM 553 (635)
Q Consensus 474 ~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 553 (635)
++.|+++++|++.++|+++..|++... ..+++|.+++||+++++++.+++.+ ++ ..++|.||+||++..+
T Consensus 190 ~~~l~~~~~t~~~~~P~~l~~l~~~~~------~~~~l~~~~~~G~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~ 259 (436)
T TIGR01923 190 LEMIANERVTHISLVPTQLNRLLDEGG------HNENLRKILLGGSAIPAPLIEEAQQ-YG---LPIYLSYGMTETCSQV 259 (436)
T ss_pred HHHHHHhCCeEEEeHHHHHHHHHhCcC------CCCceEEEEECCCCCCHHHHHHHHH-hC---CceeeEecCCccchhc
Confidence 999999999999999999999988643 1168999999999999999998865 44 7899999999998765
Q ss_pred cccCCCCCCCCCCCCCCCCCCCeEEE-EcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCe
Q 006688 554 ITPLPGAWPQKPGSATFPFFGVQPVI-VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632 (635)
Q Consensus 554 ~~~~~~~~~~~~~siG~pl~g~~v~I-vD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDl 632 (635)
+.........+. ++|+|+++++++| .|+.+ +.|||+|+| +.++.||+++++.+...+ .+|||+|||+
T Consensus 260 ~~~~~~~~~~~~-~~G~~~~~~~~~i~~~~~~------~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~~~~~TGD~ 327 (436)
T TIGR01923 260 TTATPEMLHARP-DVGRPLAGREIKIKVDNKE------GHGEIMVKG--ANLMKGYLYQGELTPAFE---QQGWFNTGDI 327 (436)
T ss_pred cCcCcccccccc-CCCccCCCcEEEEEeCCCC------CceEEEEEC--CccchhhCCChhhhhhhh---cCCCeeccce
Confidence 543322222223 5999999999999 44332 689999999 899999999887775443 3789999999
Q ss_pred Eec
Q 006688 633 CSR 635 (635)
Q Consensus 633 gr~ 635 (635)
|++
T Consensus 328 ~~~ 330 (436)
T TIGR01923 328 GEL 330 (436)
T ss_pred EEE
Confidence 985
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=365.29 Aligned_cols=295 Identities=13% Similarity=0.107 Sum_probs=250.0
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 006688 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310 (635)
Q Consensus 231 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~ 310 (635)
+++||+||.++++++|+.|. .|+++|++|+|+++|++++++++||++++|++++||++..+.+++..++++++++++++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 68999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcE
Q 006688 311 SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390 (635)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 390 (635)
++... . + . . .....+++++
T Consensus 86 ~~~~~------------------------~----~--~----------------------~---------~~~~~~~~~~ 104 (414)
T PRK08308 86 GESDF------------------------T----K--L----------------------E---------AVNYLAEEPS 104 (414)
T ss_pred cCccc------------------------c----c--c----------------------c---------CCCCCCCCce
Confidence 65310 0 0 0 0 0013568999
Q ss_pred EEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCCh
Q 006688 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470 (635)
Q Consensus 391 ~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~ 470 (635)
+|+|||||||.||||+++|+++..+. ......+++..+|+++..+|++|.++++..++.+|..|+++++.+. +++
T Consensus 105 ~i~~TSGtTG~PKgv~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~~ 179 (414)
T PRK08308 105 LLQYSSGTTGEPKLIRRSWTEIDREI-EAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN----KNP 179 (414)
T ss_pred EEEECCCCCCCCcEEEEehHhHHHHH-HHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC----CCH
Confidence 99999999999999999999976554 3344568888999999999999999987788999999999999865 489
Q ss_pred hHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccccccccccccc
Q 006688 471 GRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550 (635)
Q Consensus 471 ~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~ 550 (635)
..+++.++++++|++..+|+++..|.+.... ..+++.++++|++++++++++|++. + .+++|.||+||++
T Consensus 180 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------~~~l~~~~~~G~~l~~~~~~~~~~~-~---~~~~~~YG~tE~~ 249 (414)
T PRK08308 180 KFALNILRNTPQHILYAVPLMLHILGRLLPG------TFQFHAVMTSGTPLPEAWFYKLRER-T---TYMMQQYGCSEAG 249 (414)
T ss_pred HHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc------cccccEEEEccCCCCHHHHHHHHHh-C---ChhhhccCccccC
Confidence 9999999999999999999999999876421 1368899999999999999999876 2 6799999999998
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcC
Q 006688 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630 (635)
Q Consensus 551 ~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTG 630 (635)
.+..... ...++++|+|+|++++++.++. +.+|||+|++ . ++||+||
T Consensus 250 ~~~~~~~----~~~~~~~G~p~~~~~~~~~~~~------~~~gel~v~~--~---------------------~~~~~TG 296 (414)
T PRK08308 250 CVSICPD----MKSHLDLGNPLPHVSVSAGSDE------NAPEEIVVKM--G---------------------DKEIFTK 296 (414)
T ss_pred CeeecCC----CCCCCccCccCCCeEEEEecCC------CCCceEEEEc--C---------------------CceEECC
Confidence 6443221 2355789999999999998643 4589999987 1 5799999
Q ss_pred CeEec
Q 006688 631 DGCSR 635 (635)
Q Consensus 631 Dlgr~ 635 (635)
|+|++
T Consensus 297 Dl~~~ 301 (414)
T PRK08308 297 DLGYK 301 (414)
T ss_pred ceEEE
Confidence 99985
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=336.68 Aligned_cols=392 Identities=22% Similarity=0.277 Sum_probs=294.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ ++++|+++|+++.+. .+++||+|++++++++|+.|...|++.||.|+++|+|.+|++..+|+..|+
T Consensus 78 ti~~~F~~~-vrr~p~k~aii~~~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl 152 (649)
T KOG1179|consen 78 TIAELFLSQ-VRRQPDKPAIIYEGP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL 152 (649)
T ss_pred cHHHHHHHH-HHhCCCccEEEEeCC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence 378999999 899999999999864 489999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++...||++...+.+.+-++.++++.+|++.+.. +.+.+..+.+. ...-++...+...
T Consensus 153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~---------~~~~e~~~~l~---~~~i~~~~~~~~~--------- 211 (649)
T KOG1179|consen 153 GVITAFINTNLRGEPLLHSITVSGARALVVGPELL---------NALEEILPLLI---KNGIHVFSLGPTS--------- 211 (649)
T ss_pred CceeeeeccccccchhhhhhhhcCceEEEECHHHH---------HHHHhcchhhh---hccceEEecCCCC---------
Confidence 99999999999999999999999999999987753 22222211111 0111122221111
Q ss_pred CCCCcchhhhhcCcCCCCC----CcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 361 QDGRDIWWQDVVPKYPTKC----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
.......+.+.++...... ......-.++++.||||||||.||+.+++|..++... ......++++++|+++..+
T Consensus 212 ~~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a-~g~~~~~g~~~~DvvY~~l 290 (649)
T KOG1179|consen 212 VPDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGA-AGFYYVFGMTADDVVYTTL 290 (649)
T ss_pred CCchHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHH-HHHHHHhCCCccceEEEcc
Confidence 1111223333333332222 1223455779999999999999999999999865543 4345579999999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|.++.+..+-.+|..|+|+|+-.+ |++..+|+-..+|+||++.-.--+.+.|++.+..+ ...-+.+|..+
T Consensus 291 PLYHsaa~ilGi~~~l~~GaT~VlrkK----FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~--~er~HkVRla~- 363 (649)
T KOG1179|consen 291 PLYHSAAGILGIGGCLLHGATVVLRKK----FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSP--EERQHKVRLAY- 363 (649)
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEecc----cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCCh--hhcCceEEEEe-
Confidence 999999999999999999999999765 79999999999999999999999999999987643 33446788877
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCC------CCCCeEE---------EEc
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP------FFGVQPV---------IVD 581 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~p------l~g~~v~---------IvD 581 (635)
|.-|.+++|+.|.++||. .++.+.||+||.....+.. . .+.+.+|+. +--+++- |.|
T Consensus 364 -GNGLR~diW~~Fv~RFg~--~~IgE~YgaTEgn~~~~N~-d----~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd 435 (649)
T KOG1179|consen 364 -GNGLRPDIWQQFVKRFGI--IKIGEFYGATEGNSNLVNY-D----GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRD 435 (649)
T ss_pred -cCCCCchHHHHHHHHcCC--CeEEEEeccccCcceeeee-c----CccccccchhhhhhhccceEEEEecCCCCceeec
Confidence 788999999999999994 6799999999987644332 2 223333321 1112222 233
Q ss_pred CCC--CccCCCcceEEEEecCCCcc---hhhhcCChhHHHHh----hcCCCCceEEcCCeEe
Q 006688 582 EKG--VEIEGECSGYLCIKSSWPGA---FRTLYGDHERYETT----YFKPFPGYYFTGDGCS 634 (635)
Q Consensus 582 ~~g--~~vp~g~~GEL~i~g~~~~v---~~GY~~~~e~t~~~----~~~~~~g~yrTGDlgr 634 (635)
++| .+|++|++|.|+-+=....- +.||.+..+.+.+. -|.++|-||.|||+-.
T Consensus 436 ~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv 497 (649)
T KOG1179|consen 436 SQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLV 497 (649)
T ss_pred CCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEE
Confidence 333 35779999966544211233 89999976655443 3565666999999854
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=351.26 Aligned_cols=383 Identities=15% Similarity=0.041 Sum_probs=271.8
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~i 271 (635)
+|.+-....++.++|++. ++++|+++|+...... +..+.+||+|+.+++.++|+.|+++|+++||+|+|+++|+++|+
T Consensus 419 ~~~~~~~~~Tl~dll~~~-a~~~pd~~al~~~~~~-g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewv 496 (1452)
T PTZ00297 419 EYNPLAGVRSLGEMWERS-VTRHSTFRCLGQTSES-GESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIV 496 (1452)
T ss_pred cCCCcccCCCHHHHHHHH-HHHCCCCeEEEEeccC-CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 444444445688999998 8999999999743111 33478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCc
Q 006688 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (635)
Q Consensus 272 va~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (635)
++.+||+++|++.||+++ +.+++.++++++++++||++.... ....+. . ...++++++++...
T Consensus 497 ia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l------------~kl~~i-~--~~~Lr~IIv~d~~~ 559 (1452)
T PTZ00297 497 ILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSV------------AAILTC-R--SRKLETVVYTHSFY 559 (1452)
T ss_pred HHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHH------------HHHHhh-c--ccCCcEEEEECCCc
Confidence 999999999999999975 467999999999999999975431 111111 1 13688888886421
Q ss_pred cccc-cccccCCCCcchhhhhcCcCCC--CCCcccCCCCCcEEEEE---ccCCCCCCcEEEEccchHHHHHHHHHHHh--
Q 006688 352 AMTR-ENTKWQDGRDIWWQDVVPKYPT--KCEVEWVDAEDPLFLLY---TSGSTGKPKGVLHTTGGYMVHTATTFKYA-- 423 (635)
Q Consensus 352 ~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~Ii~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~-- 423 (635)
+... ............|++++..... ........++|++.|+| ||||||.||||++||+|++.++.......
T Consensus 560 ~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~ 639 (1452)
T PTZ00297 560 DEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVL 639 (1452)
T ss_pred ccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccc
Confidence 0000 0000001112346666554321 11123347889999996 99999999999999999877765543311
Q ss_pred cCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcccc
Q 006688 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (635)
Q Consensus 424 ~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~ 503 (635)
....++|+++.++|++|.++.+ ..+.+++.|+++.. +++..+++.|+++++|+++++|.+++.+........
T Consensus 640 ~~~~~~D~~Ls~LPLaHI~er~-~~~~~l~~G~~I~~-------~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~ 711 (1452)
T PTZ00297 640 PSSFKKHLMVHFTPFAMLFNRV-FVLGLFAHGSAVAT-------VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRAN 711 (1452)
T ss_pred cCCCCCCEEEEechHHHHHHHH-HHHHHHHcCCEEEe-------CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHh
Confidence 1456789999999999998854 45677899999863 378999999999999999999999997754321100
Q ss_pred c------------------------cCC----------------CCCceEEEecCC--CCCHHHHHHHHHHhCCCCcccc
Q 006688 504 T------------------------RYS----------------RKSLRVLGSVGE--PINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 504 ~------------------------~~~----------------l~sLr~v~~gGe--~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
. ... -.++|.+++||. +++..+.. .++++
T Consensus 712 ~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~---------~i~i~ 782 (1452)
T PTZ00297 712 ERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE---------HISVC 782 (1452)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC---------CceEE
Confidence 0 000 046888888873 55433222 26678
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcC--CCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhh
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE--KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~--~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~ 619 (635)
..||.||+. +.+.++. .+ ..|+|+||++++|.|. .+.. + ..|||+|++ ++||+.|.+.+
T Consensus 783 ~g~glTE~~---~~~~~~~--~~--~~G~PlpgvEvKI~~~~E~~~~--~-~~GEIlvr~---------~kdpe~T~e~~ 843 (1452)
T PTZ00297 783 YVPCLREVF---FLPSEGV--FC--VDGTPAPSLQVDLEPFDEPSDG--A-GIGQLVLAK---------KGEPRRTLPIA 843 (1452)
T ss_pred EecceEEee---eecCCCC--cc--cCCeecCceEEEEcccccccCC--C-CCCeEEEEE---------CCChHHHHHhh
Confidence 899999943 2232222 12 2499999999999973 2221 2 269999976 48999998742
Q ss_pred cCCCCceEEcCCeE
Q 006688 620 FKPFPGYYFTGDGC 633 (635)
Q Consensus 620 ~~~~~g~yrTGDlg 633 (635)
+||+..|.+-
T Consensus 844 ----~gW~~dG~L~ 853 (1452)
T PTZ00297 844 ----AQWKRDRTLR 853 (1452)
T ss_pred ----CcCccCCeEE
Confidence 6888888763
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=256.82 Aligned_cols=211 Identities=18% Similarity=0.193 Sum_probs=169.4
Q ss_pred CCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecC
Q 006688 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~ 463 (635)
..++|+++|+|||||||.||||+++|+++..+.... ... +...++++...|++|..++ ..++.+++.|+++++.+.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~-~~~--~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADAT-HDR--LGGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHH-Hhc--cCCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCc
Confidence 357899999999999999999999999976654333 222 3456788999999999985 467889999999988543
Q ss_pred CCCCCChhHHHHHHHHcC--CcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 464 APTYPDSGRSWDIVDKYK--VTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~--vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
... +++..+++.+++++ +++...+|.++..++.... ...+++++|.+++||+++++++.+++.+ ++ ++++
T Consensus 108 ~~~-~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~---~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~---~~v~ 179 (358)
T PRK07824 108 SAG-FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA---ATAALAELDAVLVGGGPAPAPVLDAAAA-AG---INVV 179 (358)
T ss_pred CCC-cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc---ccCCcccceEEEECCCCCCHHHHHHHHh-cC---CcEE
Confidence 233 48999999999998 5667788998888776533 2346789999999999999999998875 44 8899
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~ 621 (635)
+.||+||++..+. ..|+|++|++++|.| |||+++| +.++.||+++++.+ .|.
T Consensus 180 ~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~-----------Gei~v~g--~~~~~gY~~~~~~~--~~~- 231 (358)
T PRK07824 180 RTYGMSETSGGCV------------YDGVPLDGVRVRVED-----------GRIALGG--PTLAKGYRNPVDPD--PFA- 231 (358)
T ss_pred ecccCCccCCCcC------------cCceeCCCCEEEecC-----------CEEEEec--CccccccCCCcccc--ccc-
Confidence 9999999875331 258999999999943 9999999 89999999998743 222
Q ss_pred CCCceEEcCCeEec
Q 006688 622 PFPGYYFTGDGCSR 635 (635)
Q Consensus 622 ~~~g~yrTGDlgr~ 635 (635)
.+|||+|||+|++
T Consensus 232 -~~g~~~TGDl~~~ 244 (358)
T PRK07824 232 -EPGWFRTDDLGAL 244 (358)
T ss_pred -CCCceecccEEEE
Confidence 3789999999985
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=225.45 Aligned_cols=220 Identities=19% Similarity=0.145 Sum_probs=161.4
Q ss_pred hccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCC
Q 006688 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289 (635)
Q Consensus 211 a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~ 289 (635)
++.+|+++|+++.++..+..+++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++||++++|++++|++
T Consensus 6 ~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n- 84 (227)
T TIGR03089 6 LAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG- 84 (227)
T ss_pred hhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-
Confidence 67899999998753221134689999999999999999998 7999999999999999999999999999999999995
Q ss_pred CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhh
Q 006688 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQ 369 (635)
Q Consensus 290 ~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 369 (635)
+++++++|++++...... .+ +.++.+............. ......|.
T Consensus 85 ------------~s~a~~~v~~~~~~~~~~------------------~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 131 (227)
T TIGR03089 85 ------------DPDADVVVTGPDRLAAAA------------------GS--GEVVALSLDPLGRRVAGEL-PPGVIDFA 131 (227)
T ss_pred ------------CCCCCEEEeCcchhhhcc------------------cC--CceEEEeccccccCCCCCC-CCcccchh
Confidence 789999999876532110 01 2233321100000000000 01112344
Q ss_pred hhcCcCCCCCCcc-cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHh
Q 006688 370 DVVPKYPTKCEVE-WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (635)
Q Consensus 370 ~~~~~~~~~~~~~-~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i 448 (635)
+.+........+. ...++|++.|+||||+ +|++++.+. ...+++++|+++ .+|++|..|+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~-----~~~~l~~~D~~l-~~Pl~H~~gl~~~~ 196 (227)
T TIGR03089 132 PEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA-----RAAGLPPGDRVL-VLAWTDLEDFLATL 196 (227)
T ss_pred hhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH-----hhcCCCCCCeEE-ecCCCchHHHHHHH
Confidence 4443222222222 4567999999999985 666655443 457899999999 99999999987889
Q ss_pred HHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCc
Q 006688 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (635)
Q Consensus 449 ~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt 483 (635)
+.+|..|+++++.++ ||++.+++.|+++|||
T Consensus 197 ~~~l~~G~t~v~~~r----Fd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 197 LAPLAAGGSLVLVTH----PDPARLDQIAETERVT 227 (227)
T ss_pred HHHhccCceEEEecC----CCHHHHHHHHHhhcCC
Confidence 999999999999864 6999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=237.10 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=164.2
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHHHH--HHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEec
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~ 462 (635)
+++++++++|||||||.||+|.++|.++..+... .....++++++|+++...++.+..+.....+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 4568899999999999999999999986543221 22234688999999887766654443334566788899998776
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccccc
Q 006688 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542 (635)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n 542 (635)
. .+++.+++.|+++++|++..+|+++..|++............+||.+++|||++++++.+.+.+.++ +++++
T Consensus 153 ~----~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g---~~v~~ 225 (422)
T TIGR02155 153 G----GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG---MKATD 225 (422)
T ss_pred C----CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC---CceEe
Confidence 4 2678999999999999999999999998865321100112358999999999999999999999997 78999
Q ss_pred cccccccccc-ccccCCCCCCCCCCCCCCCCC--CCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHh
Q 006688 543 TWWQTETGGF-MITPLPGAWPQKPGSATFPFF--GVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (635)
Q Consensus 543 ~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~--g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~ 618 (635)
.||+||+++. +...... ...|.+++ +..++|+| ++++++++|+.|||+|++ .. ...
T Consensus 226 ~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~--~~------------~~~ 285 (422)
T TIGR02155 226 IYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTT--LT------------KEA 285 (422)
T ss_pred cccchhhcCCceeecccc------cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEec--CC------------ccc
Confidence 9999998532 2111110 11244443 56778999 589999999999999998 21 112
Q ss_pred hcCCCCceEEcCCeEec
Q 006688 619 YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 619 ~~~~~~g~yrTGDlgr~ 635 (635)
+ ..+||+|||++++
T Consensus 286 ~---p~~ry~TGDl~~~ 299 (422)
T TIGR02155 286 L---PVIRYRTRDLTRL 299 (422)
T ss_pred c---ceeeEEcCcEEEE
Confidence 1 2469999999975
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=218.31 Aligned_cols=407 Identities=15% Similarity=0.120 Sum_probs=281.8
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
-++.++|+.. ++++||.+|+..-+.++....++||++|..|+.++|..|... -+++||.|+++.++++|++++++||+
T Consensus 770 ~~ile~Lq~R-~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cl 848 (1363)
T KOG3628|consen 770 LTILEILQWR-AAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACL 848 (1363)
T ss_pred HHHHHHHHHH-hhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHH
Confidence 4678999988 899999999999888778889999999999999999999966 58999999999999999999999999
Q ss_pred HhCCeEEecCCCCC------HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 006688 279 RIGAVHSVVFAGFS------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (635)
Q Consensus 279 ~~Ga~~vpld~~~~------~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (635)
.+|.+++|+.|... ...+..|++.+++..|+++.......+..+....++ ...+..++.+++...
T Consensus 849 y~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~---------~s~~p~i~~~~~~~~ 919 (1363)
T KOG3628|consen 849 YLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVD---------QSAIPLILVLPKLPE 919 (1363)
T ss_pred hcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhh---------hhcchhhhcccccch
Confidence 99999999987543 356788999999999999876532222111111111 123333333333210
Q ss_pred ccccccccCCCCcchhhhh---cCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCC
Q 006688 353 MTRENTKWQDGRDIWWQDV---VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS 429 (635)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 429 (635)
.|... ........++....++.+||+=|.--++|.--||.++|.+++ ++....+..+.+.+.
T Consensus 920 --------------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHssll-a~Ck~iKe~~~l~~~ 984 (1363)
T KOG3628|consen 920 --------------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLL-AFCKIIKETCQLYKS 984 (1363)
T ss_pred --------------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHH-HHHHHHHHHHccccC
Confidence 00000 011111222334467889999999999999999999999955 456778888889988
Q ss_pred cEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc---c--c
Q 006688 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY---V--T 504 (635)
Q Consensus 430 d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~---~--~ 504 (635)
.-++...+.+-..|+....+...+.|.+.++.+..+..-++..|++.|++++|.-++.+=+.+..+.+..... . .
T Consensus 985 rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~ 1064 (1363)
T KOG3628|consen 985 RPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKR 1064 (1363)
T ss_pred CceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhh
Confidence 8888888888888888888888999999888877666568999999999999999999998888887653210 0 0
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHHh---CCCCcccccccccccccccccccCCCCC--------------------
Q 006688 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVV---GDSRCPISDTWWQTETGGFMITPLPGAW-------------------- 561 (635)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~l~~~~~~~~---~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------------------- 561 (635)
..+.++ ..++..-|.....+++.|.+.| +.....+--.|+.-=.-.++.....+..
T Consensus 1065 gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve 1143 (1363)
T KOG3628|consen 1065 GNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVE 1143 (1363)
T ss_pred hccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeee
Confidence 111222 3344445555556666666554 2211223333333222112211100000
Q ss_pred CCCC-----CCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC--------CCCceE
Q 006688 562 PQKP-----GSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK--------PFPGYY 627 (635)
Q Consensus 562 ~~~~-----~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~--------~~~g~y 627 (635)
..++ ...|+..+++++.|+++ +..+|..|+.||||+.+ +.-+.+|++--+.+....|. ...+|-
T Consensus 1144 ~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S--~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~ 1221 (1363)
T KOG3628|consen 1144 VGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNS--AHNASCSFTIGDELRSNHFNARLSSGDLLGKSYA 1221 (1363)
T ss_pred cCCCCccccccCCcccccceeEEeCCccccccccCCcceEEecc--ccccccccccCchhhhhhhhhhccccccccccce
Confidence 0011 12488889999999995 67789999999999999 77888777642223332221 123499
Q ss_pred EcCCeEe
Q 006688 628 FTGDGCS 634 (635)
Q Consensus 628 rTGDlgr 634 (635)
||||+|.
T Consensus 1222 RTG~LGF 1228 (1363)
T KOG3628|consen 1222 RTGDLGF 1228 (1363)
T ss_pred eeeeeee
Confidence 9999985
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=218.86 Aligned_cols=198 Identities=18% Similarity=0.148 Sum_probs=148.1
Q ss_pred CCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH--HhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~--~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.+.++++.|.|||||||.||+|.+||..+......... ...+++++|+++...++++..+.....++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 35678999999999999999999999986544322221 1358999999999999888776434445667788887543
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
. .....++.|+++++|++..+|+.+..|.+...+........+||.+++|||++++++.+++.+.++ ++++
T Consensus 163 ~------~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g---~~v~ 233 (445)
T TIGR03335 163 G------KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG---CEVY 233 (445)
T ss_pred C------chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC---CcEE
Confidence 2 234568999999999999999988877764321101112468999999999999999999998887 7899
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCC--CCCeEEEEcCC-CCccCCCcceEEEEec
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPF--FGVQPVIVDEK-GVEIEGECSGYLCIKS 599 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl--~g~~v~IvD~~-g~~vp~g~~GEL~i~g 599 (635)
|.||+||++....+. . ..|..+ +.+.+.|+|++ +.++|.|+.|||+|+.
T Consensus 234 ~~YG~TE~~~~~~c~--~-------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~ 285 (445)
T TIGR03335 234 NTYGSTEGTMCGECQ--A-------VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTT 285 (445)
T ss_pred ecCChhhhhheEEec--C-------CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEe
Confidence 999999986322111 1 123433 45789999975 5679999999999998
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-22 Score=209.38 Aligned_cols=169 Identities=18% Similarity=0.233 Sum_probs=133.0
Q ss_pred CCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCC--CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCC
Q 006688 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP--SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 464 (635)
Q Consensus 387 ~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~ 464 (635)
+..++|+|||||||.||||+++|++++.+.. .....++++. .|++++.+|++|.+++.+.++.++..|+++++.+.
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~- 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQ-AIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA- 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHH-HHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-
Confidence 5689999999999999999999999766553 3334566644 46899999999998877788889999999999764
Q ss_pred CCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccccccc
Q 006688 465 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544 (635)
Q Consensus 465 ~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~Y 544 (635)
+++..+++.++. .|++.++|++++.|.+.. .+++++|. ++||+++++++++.+.+. + ..++++.|
T Consensus 173 ---~~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~------~~l~slr~-i~gGa~l~~~l~~~~~~~-g--~~~v~~~Y 237 (386)
T TIGR02372 173 ---APASGIMRHARP--GDLIVGTPFIWEQLADLD------YRLPGVVG-VSSGAPSTAATWRCLLAA-G--LARLLEVY 237 (386)
T ss_pred ---CChHHHHHhhcc--CCEEEECcHHHHHHHhhC------cCCCccee-EecCCCCCHHHHHHHHHh-c--ccchhhee
Confidence 488888888864 389999999999998752 24577886 678999999999999875 4 24699999
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCeEEE
Q 006688 545 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI 579 (635)
Q Consensus 545 G~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~I 579 (635)
|+||++.+.+.. .+...|+|+|+.++.+
T Consensus 238 G~TEt~~i~~~~-------~~~~~~~~~p~~~~~~ 265 (386)
T TIGR02372 238 GATETGGIGLRE-------APDDPFRLLPDLACFA 265 (386)
T ss_pred cccccccccccc-------CCCCCcccCCCccccC
Confidence 999988654322 1234678888877654
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-20 Score=207.72 Aligned_cols=393 Identities=17% Similarity=0.140 Sum_probs=242.3
Q ss_pred HHHHHhhhhhccCCCceEEEEEcC--CCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEAN--DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~--~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
++..+.+. +...|+..+..+.-. ..+.-..+||++.+..++.+++.|...|.-+++.|++++..+.++++.++++++
T Consensus 38 ~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 38 LEDSFRRE-LAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred hhhHHHHH-HhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 45566666 677788887765321 114456899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCC----HHHHHHHHHh---cCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 006688 280 IGAVHSVVFAGFS----SDSLAQRIMD---CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (635)
Q Consensus 280 ~Ga~~vpld~~~~----~~~l~~il~~---~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (635)
+|..++++||.+| ++++..+... ....++ ...++.+...... .+.. .+...
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~-------------~~l~i~~~~~~~~---~~~~-sv~~~----- 174 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV-------------RRLNIIDILLNSL---FPKL-SVETI----- 174 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhheeccceeh-------------hhhhhHHHHhhcc---cccc-chhhc-----
Confidence 9999999999999 3322222111 111110 0111111111100 0000 00000
Q ss_pred ccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEE
Q 006688 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (635)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 432 (635)
...+.... ...........-++..+++.||||+||.||+|.-+|..+++ ...|+...+..+.++++
T Consensus 175 ------------~~~f~~~~-~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~-~fdw~~~~f~~t~s~~~ 240 (1032)
T KOG1178|consen 175 ------------ADSFQMVL-HNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLAN-AFDWMFTTFPPTGSDRF 240 (1032)
T ss_pred ------------cchhhhhh-ccCCCcceeeecccccceEeecccccccccccchhHHHHHh-hhhhccccCCcCccchh
Confidence 00111111 11112222344577799999999999999999999999554 55666667888888887
Q ss_pred EEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc--------cc
Q 006688 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY--------VT 504 (635)
Q Consensus 433 l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--------~~ 504 (635)
.....++++.. +.....+++..+..++++.....-.+..+.+.+++++++.++.+|++.++++...... ..
T Consensus 241 ~~~~~~~~~d~-i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~ 319 (1032)
T KOG1178|consen 241 TFKTSVYFDDT-IQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSL 319 (1032)
T ss_pred hhhheeecccc-hHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhc
Confidence 55566656554 4555555555555444443322214789999999999999999999988887765431 00
Q ss_pred ---cCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC--CCCCCCCC---CCCCC----
Q 006688 505 ---RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG--AWPQKPGS---ATFPF---- 572 (635)
Q Consensus 505 ---~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~s---iG~pl---- 572 (635)
....+.|+...++||++..+++..+...+.. .-+..-|+.+|.++......-. ........ +.+-.
T Consensus 320 ~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~--~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~ 397 (1032)
T KOG1178|consen 320 SDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAE--IFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIG 397 (1032)
T ss_pred ccccccchhheeeeecCCccchhhhhhhhhcccc--eeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccC
Confidence 1112479999999999999999877666542 3344458999887766543111 00000000 11111
Q ss_pred CCCeEEEEcCCCCccCCCcceEEEEecCC--CcchhhhcCChhHHHHhhcC---CCCceEEcCCeEec
Q 006688 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSW--PGAFRTLYGDHERYETTYFK---PFPGYYFTGDGCSR 635 (635)
Q Consensus 573 ~g~~v~IvD~~g~~vp~g~~GEL~i~g~~--~~v~~GY~~~~e~t~~~~~~---~~~g~yrTGDlgr~ 635 (635)
+.+.+.+....+.+.++++.+.+...+-. ..+..| +..++.+.+.+.. ..+.+|||||+||.
T Consensus 398 ~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~ 464 (1032)
T KOG1178|consen 398 SLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRS 464 (1032)
T ss_pred CCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhccccccccee
Confidence 11334555555666555544444433310 233445 4566666665542 12339999999973
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=156.22 Aligned_cols=204 Identities=22% Similarity=0.193 Sum_probs=149.8
Q ss_pred CCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
+.-++...|--||||||+|+-+..+...+....... .-...+...+|++..+...+...|-...-+++--.|++++-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 445667778999999999999999988644332211 112467788999887776555444323334455556666655
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
.+. +.+.-+++|+.+++|++.++|+.+..|.+...+......-.+||.+++|+|++++++.+.+.+.++ +..+
T Consensus 167 ~~g----~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g---~~~~ 239 (438)
T COG1541 167 SGG----NTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG---CKAF 239 (438)
T ss_pred CCc----cHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC---Ccee
Confidence 432 778999999999999999999999999887654322233468999999999999999999999998 7789
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEec
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g 599 (635)
+.||.||..+.....+... . -.--.-+..-+.|+| ++|+.+|.|+.|||+++.
T Consensus 240 diYGltE~~g~g~~eC~~~----~-glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~ 293 (438)
T COG1541 240 DIYGLTEGFGPGAGECTER----N-GLHIWEDHFIFEIVDPETGEQLPDGERGELVITT 293 (438)
T ss_pred eccccccccCCcccccccc----c-CCCcchhhceeeeecCCcCccCCCCCeeEEEEEe
Confidence 9999999976531111111 1 111234577889999 589999999999999998
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-13 Score=146.07 Aligned_cols=392 Identities=16% Similarity=0.149 Sum_probs=256.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCC--chHHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN-YLKDIGVKKGDAVIIYLPML--MELPIAMLACA 278 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~-~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l 278 (635)
+..+++.. -..++..+|.++-+..+. ...+||..+..|+.++|+ .|-+.|..++|+|.++...+ .+++++.++|+
T Consensus 96 ~~avl~~~-~nhs~~~ta~i~id~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~ 173 (1363)
T KOG3628|consen 96 IIAVLRYR-RNHSATSTAHICIDKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCF 173 (1363)
T ss_pred hHHHHHhh-ccCCCCCceEEEEcCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhcccc
Confidence 34455554 466788899999887744 889999999999999999 77788999999999998766 89999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 279 ~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
-.|.+.+|+.+....+++..+++-...+++++.....+.............+++.-.
T Consensus 174 l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~----------------------- 230 (1363)
T KOG3628|consen 174 LLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWK----------------------- 230 (1363)
T ss_pred ccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhh-----------------------
Confidence 999999999999999999999999999999987765321111000000000000000
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHH--------------HHHH----
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--------------ATTF---- 420 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~--------------~~~~---- 420 (635)
...+...........+. ..-. ..||-||++++|.--||+.+|+ ++... ..+.
T Consensus 231 ------t~~~k~~~~~~k~~~P~--~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~ 300 (1363)
T KOG3628|consen 231 ------TNDFKGNYTKDKIKKPR--MQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCL 300 (1363)
T ss_pred ------cccccceeehhhccCCc--eeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcch
Confidence 00000000000001111 1122 8999999999999999999998 43221 1111
Q ss_pred -HHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcC
Q 006688 421 -KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499 (635)
Q Consensus 421 -~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~ 499 (635)
...++....++++......--.|++..++.+|++|.|.+.++++.. +.|..+.+++.+++.+++..--..|++.....
T Consensus 301 ~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l-~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny 379 (1363)
T KOG3628|consen 301 HAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVL-KPPGLIANLITKYRATWSLTDYAGLKQPVYNY 379 (1363)
T ss_pred hhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhc-CCCcchhhhhccceeEEEeecccccCcccccc
Confidence 2234455667777777666677778888999999999999987544 37889999999999999887655555544322
Q ss_pred ccc---------cccCCCCCceEEEecCCCCCHHHHH----HHHHHhCCCCccccccccc-----------------ccc
Q 006688 500 NEY---------VTRYSRKSLRVLGSVGEPINPSAWR----WFFNVVGDSRCPISDTWWQ-----------------TET 549 (635)
Q Consensus 500 ~~~---------~~~~~l~sLr~v~~gGe~l~~~l~~----~~~~~~~~~~~~l~n~YG~-----------------TE~ 549 (635)
.+. ....++++||.+++.-+.+..+... +|.+-+|. ...-..|-+ .|.
T Consensus 380 ~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~--~~~~~~~~p~l~ll~hGgi~is~k~~~~~ 457 (1363)
T KOG3628|consen 380 QEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGE--TNVKVVDFPILCLLWHGGIPISFKDWMEI 457 (1363)
T ss_pred cCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccC--cCcceeechhhhhhhcCceEEEeccchhh
Confidence 110 1225678999999999998887543 34332331 111122222 343
Q ss_pred cccccccCCCCC-----------------------------CCCCCCCCCCCCC-CeEEEEcC-CCCccCCCcceEEEEe
Q 006688 550 GGFMITPLPGAW-----------------------------PQKPGSATFPFFG-VQPVIVDE-KGVEIEGECSGYLCIK 598 (635)
Q Consensus 550 ~~~~~~~~~~~~-----------------------------~~~~~siG~pl~g-~~v~IvD~-~g~~vp~g~~GEL~i~ 598 (635)
+...... ++.. ......+|+..|| +.+.|+++ ..+.|..+++|||||.
T Consensus 458 ~~~~~r~-p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVs 536 (1363)
T KOG3628|consen 458 GTVSIRR-PEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVS 536 (1363)
T ss_pred hcccccC-cccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEe
Confidence 3322211 1100 0011135665555 45667774 6788999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcC-------CCCc---eEEcCCeEe
Q 006688 599 SSWPGAFRTLYGDHERYETTYFK-------PFPG---YYFTGDGCS 634 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~-------~~~g---~yrTGDlgr 634 (635)
+ +++..+||.-+..|...|-. ..++ +.|||=+|.
T Consensus 537 S--~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGF 580 (1363)
T KOG3628|consen 537 S--NSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGF 580 (1363)
T ss_pred c--CCcccceeeccccccceEEeeeccccCCCCccchhhhhcceee
Confidence 9 99999999877555444421 1112 778887764
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=127.69 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=101.2
Q ss_pred cEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh--cCCCCCcEEEEeCCcceecchhHHhHHHhhcCcE-EEEecCCC
Q 006688 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGAS-VVVFEGAP 465 (635)
Q Consensus 389 ~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~-lvl~~~~~ 465 (635)
-..+..||||||.|-.+.++............... .++..++++..+. +..+ .++.++.+... +-..+-
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~---~ly~~~~~~~~~~~~~~l-- 172 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN---NLYQSVNNRWISLDFFDL-- 172 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh---hHHHHHHhccceeeecCC--
Confidence 45677899999999999999886433222222211 2455666665542 1111 12222222211 233321
Q ss_pred CCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccc
Q 006688 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (635)
Q Consensus 466 ~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG 545 (635)
. .+.+..++.|++++++++.+.|+.+..|++...+ ...+ .+++.++++||+++++..+.+.+.|| +++++.||
T Consensus 173 ~-~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~--~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg---~~V~~~YG 245 (430)
T TIGR02304 173 L-APFQAHIKRLNQRKPSIIVAPPSVLRALALEVME--GELT-IKPKKVISVAEVLEPQDRELIRNVFK---NTVHQIYQ 245 (430)
T ss_pred C-cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHh--cCCC-CCceEEEEccCCCCHHHHHHHHHHhC---CCeeEccC
Confidence 1 3788999999999999999999999999886432 1212 47899999999999999999999998 88999999
Q ss_pred cccccc
Q 006688 546 QTETGG 551 (635)
Q Consensus 546 ~TE~~~ 551 (635)
+|| +.
T Consensus 246 ~tE-g~ 250 (430)
T TIGR02304 246 ATE-GF 250 (430)
T ss_pred Cch-hh
Confidence 999 43
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=83.59 Aligned_cols=203 Identities=13% Similarity=0.087 Sum_probs=112.4
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCC-CcEEEEeCCcceecchh----HHhHHHhhcCc
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKP-SDVYWCTADCGWITGHS----YVTYGPMLNGA 456 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~-~d~~l~~~~l~~~~g~~----~~i~~~L~~G~ 456 (635)
.++++..++-||||||.|--+.+.+..+.... ...++...+... .-.++...|-......+ ..+...+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 45677888999999999855555554432221 122222122221 12233333332211111 12223344555
Q ss_pred EEEEecCCCCCCChhHHHHHHH----HcCCcEEEecHHHHHHHHhcCccccccCCCC-CceEEEecC------CCCCH-H
Q 006688 457 SVVVFEGAPTYPDSGRSWDIVD----KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK-SLRVLGSVG------EPINP-S 524 (635)
Q Consensus 457 ~lvl~~~~~~~~d~~~l~~~i~----~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~-sLr~v~~gG------e~l~~-~ 524 (635)
.-.+ .+.. +|.+.+++.+. +.+...++..|.++-.++....+......++ ..+.+-.|| |.++. +
T Consensus 167 ~~~l-~~~~--ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~e 243 (365)
T PF04443_consen 167 RFAL-DNDE--LDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREE 243 (365)
T ss_pred eeee-cCCc--cCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHH
Confidence 5333 3322 47777776664 3456678888876666654332211223343 345555554 56765 5
Q ss_pred HHHHHHHHhCC-CCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecC
Q 006688 525 AWRWFFNVVGD-SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 525 l~~~~~~~~~~-~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~ 600 (635)
+.+.+.+.||. +...+++.||+||.....+..... . .++|-- +.|.|+ +.+++|.|++|-|-|-.+
T Consensus 244 f~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---~------~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl 311 (365)
T PF04443_consen 244 FYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG---H------FHVPPW-VIIRDPETLEPLPPGETGLIQVIDL 311 (365)
T ss_pred HHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC---c------ccCCCe-EEEECCCCCcCCCCCCeeEEEEEcc
Confidence 66777788884 345899999999976543322110 1 122322 777785 689999999999999883
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.16 Score=53.97 Aligned_cols=82 Identities=22% Similarity=0.148 Sum_probs=70.7
Q ss_pred EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEE
Q 006688 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (635)
Q Consensus 232 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii 309 (635)
-+|..++...+..+|+.|...|..+||+|.++..-+ ..-+...+|+.++|++++|+.+ -..++...++++.++.+|.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcEEE
Confidence 589999999999999999999999999999887622 1226788999999999999988 4567788899999999999
Q ss_pred EeCCc
Q 006688 310 TSNAV 314 (635)
Q Consensus 310 ~~~~~ 314 (635)
+...+
T Consensus 188 ~tps~ 192 (438)
T COG1541 188 ATPSY 192 (438)
T ss_pred EChHH
Confidence 88765
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.032 Score=62.00 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=24.8
Q ss_pred cCCCCCcEEEEEccCCCCC-CcEEEEccchHH
Q 006688 383 WVDAEDPLFLLYTSGSTGK-PKGVLHTTGGYM 413 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~-PKgV~~th~~l~ 413 (635)
...++.+.+...||||||. ||-+.+|...+.
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~ 107 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLK 107 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHH
Confidence 3457779999999999999 999999988643
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.006 Score=50.30 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCCCCCCCcccchhhhhhccc-CCcCCCcccCCChhhhhccCCC
Q 006688 98 ASFPSGAGKISRLNAVILGEA-LSSEENDIVLPSDDFSRQALVP 140 (635)
Q Consensus 98 ~~~~~~~~~~~L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~ 140 (635)
.+.+.+.++|||++.+.+.++ +.+. +.|++++|++++|++
T Consensus 50 ~~~~~~~~~~DL~l~~~~~~~~l~~~---~~Y~~~lf~~~ti~~ 90 (91)
T PF13745_consen 50 IPLENGGAKFDLTLEVREDGDGLRLQ---LEYNTDLFSEETIER 90 (91)
T ss_dssp -SS--SB-SSSEEEEEEE-SS-EEEE---EEEETTT--HHHHHH
T ss_pred eeccccceeeeEEEEEEecCCeEEEE---EEEEhHhCCHHHHhc
Confidence 346788999999999999885 6677 999999999998765
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.4 Score=47.64 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGY 412 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l 412 (635)
..++.+.+..-||||| |++|-|.+|...+
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l 126 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEEDI 126 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHHH
Confidence 4577889999999999 8999999999653
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=83.07 E-value=8.2 Score=42.04 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCch--HHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEE
Q 006688 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME--LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308 (635)
Q Consensus 231 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e--~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~i 308 (635)
..+|..++...+...+..+...|+.+||++.++.+-+.. ....+++++++|+..+|... .+....++++.++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 457999999988888888888999999999998876643 23456788999998887653 2455678899999988
Q ss_pred EEeC
Q 006688 309 ITSN 312 (635)
Q Consensus 309 i~~~ 312 (635)
+...
T Consensus 181 ~~~p 184 (445)
T TIGR03335 181 VASV 184 (445)
T ss_pred EECH
Confidence 7643
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=80.10 E-value=11 Score=40.74 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=63.4
Q ss_pred EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--hHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEE
Q 006688 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM--ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (635)
Q Consensus 232 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~--e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii 309 (635)
.+|...+......++..+...|+++||++......+. ..+...++.++.|+..+++++.. .+++...|++.++.+++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 4678888777777788888889999999887665443 22334677889999999988754 57788999999999998
Q ss_pred EeCCc
Q 006688 310 TSNAV 314 (635)
Q Consensus 310 ~~~~~ 314 (635)
.....
T Consensus 173 ~~Ps~ 177 (422)
T TIGR02155 173 VTPSY 177 (422)
T ss_pred EcHHH
Confidence 76653
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 635 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-152 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-152 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 1e-152 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 1e-152 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-152 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 1e-152 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-151 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-124 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 2e-16 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-12 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 5e-11 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 9e-11 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-09 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-09 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-09 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-08 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 1e-08 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 4e-08 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 4e-08 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-07 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 6e-05 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 4e-04 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 5e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 635 | |||
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 0.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 0.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 0.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 1e-143 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 4e-93 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 4e-50 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 6e-48 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 4e-46 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 2e-43 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 2e-41 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 4e-39 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 8e-38 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 9e-38 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 3e-37 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 4e-37 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 7e-36 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 3e-35 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 2e-34 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 2e-33 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 2e-27 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 1e-26 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 5e-23 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 5e-21 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 1e-20 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 2e-19 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 3e-19 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 5e-19 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 7e-19 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 7e-19 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 5e-18 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 5e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 931 bits (2408), Expect = 0.0
Identities = 254/513 (49%), Positives = 344/513 (67%), Gaps = 11/513 (2%)
Query: 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENL 182
+ + + + L+ +P++Y YK+S+ DP FW + W + Q+V + +
Sbjct: 3 QTHKHAIPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKVKNTSF 60
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
GNV I+W++ G N+ NCLDR+++ GD+ AI WE +D ++Y +L + V
Sbjct: 61 A--PGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDV 117
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
C+ AN L D+G+KKGD V IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D
Sbjct: 118 CRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIID 177
Query: 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362
++VIT++ R ++I LK VD AL + SV+ + + T + WQ+
Sbjct: 178 SSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKR----TGSDIDWQE 231
Query: 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
GRD+WW+D++ K + + E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY
Sbjct: 232 GRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291
Query: 423 AFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV 482
FDY P D+YWCTAD GW+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V
Sbjct: 292 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351
Query: 483 TIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542
I YTAPT +R+LM +G++ + R SLR+LGSVGEPINP AW W++ +G +CP+ D
Sbjct: 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411
Query: 543 TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602
TWWQTETGGFMITPLPGA K GSAT PFFGVQP +VD +G EG G L I SWP
Sbjct: 412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWP 471
Query: 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
G RTL+GDHER+E TYF F YF+GDG R
Sbjct: 472 GQARTLFGDHERFEQTYFSTFKNMYFSGDGARR 504
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 901 bits (2330), Expect = 0.0
Identities = 231/521 (44%), Positives = 313/521 (60%), Gaps = 15/521 (2%)
Query: 121 SEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCS 179
+ S + Q Y ++K S+EDPA F+ A++F W + + +V
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPF-DKVFI 60
Query: 180 ENLDVRKGNVK-IEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQL 238
+ + + + WF G N CYNC+DR+ +K AI +E ++PG ++TY +L
Sbjct: 61 PDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKEL 119
Query: 239 LQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297
L++VCQ+A L +GV+KGD V +Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL
Sbjct: 120 LEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 179
Query: 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357
RI D KVVIT++ RG K I K IVD AL E V L Y +
Sbjct: 180 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP----GVRHVLVYRK---TNNPS 232
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+ RD+ W KY T VD+EDPLFLLYTSGSTG PKGV H+T GY++
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
T +Y FD DV++ D GWITGH+YV YGP+L G + +VFEG P YP+ R WDI+
Sbjct: 293 LTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDII 352
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
D++KVT FY APT +R L R G+ Y+ +S KSLR LGSVGEPI W W+ +G +
Sbjct: 353 DEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNE 412
Query: 538 CPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVD-EKGVEIEG-ECSGY 594
PI DT+WQTE+G ++TPL G P KPGSA+FPFFG+ V++D G E+ G
Sbjct: 413 IPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGV 472
Query: 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
L +K++WP RT++ +H+RY TY P+PGYYFTGDG ++
Sbjct: 473 LAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAK 513
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 535 bits (1381), Expect = 0.0
Identities = 108/499 (21%), Positives = 182/499 (36%), Gaps = 49/499 (9%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+ ++D + S+F K + + N
Sbjct: 7 HHHHHHSSGHIDDDDKHMTSLLSQFVSKTDFE--------SYEDFQENFKILVPENFNFA 58
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
Y+ +D +K+A+ W +D G + T+ L + AN+ G+ KGD V++
Sbjct: 59 YDVVDVYARDS-PEKLAMIWC-DDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
L + ML ++GA+ + + RI K+++
Sbjct: 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD------- 169
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV---PKYPTKC 379
+ + VD A EC I + + +G + +++ P +
Sbjct: 170 VPEQVDEAHAEC--GDIPLKKAKVGGDV----------LEGWIDFRKELEESSPIFERPT 217
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
ED + ++SG+ G PK V H Y + T KY + + +++ AD G
Sbjct: 218 GEVSTKNEDICLVYFSSGTAGFPKMVEHDN-TYPLGHILTAKYWQNVEDDGLHYTVADSG 276
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
W YG + G +V V++ ++ + KY VT F PT+ R L++
Sbjct: 277 WGKCVWGKLYGQWIAGCAVFVYD--YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK-- 332
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
E ++ Y+ +L+ GEP+NP + F G + + + QTET I P
Sbjct: 333 -EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTET-VVTIATFPW 387
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK--SSWPGAFRTLY-GDHERYE 616
KPGS P G + ++D G E G + I P Y D ER E
Sbjct: 388 M-EPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 617 TTYFKPFPGYYFTGDGCSR 635
T+ GYY TGD
Sbjct: 447 ETW---HDGYYHTGDMAWM 462
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 425 bits (1096), Expect = e-143
Identities = 86/463 (18%), Positives = 159/463 (34%), Gaps = 57/463 (12%)
Query: 188 NVKIEWFKGGIT---NICYNCLDR----NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQ 240
++ ++W + N + LD A++W N G + + +L +
Sbjct: 23 SMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV-NGKGKELMWNFRELSE 81
Query: 241 QVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299
Q AN L G+++GD V + LP + E + +L C R G + S + R
Sbjct: 82 NSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYR 141
Query: 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA--KSGISVDVCLTYENQSAMTREN 357
+ K K ++ + + VD EC + + V
Sbjct: 142 LQMSKAKAIVAGDE---------VIQEVDTVASECPSLRIKLLVS--------------- 177
Query: 358 TKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
+ D W ++ ++ + T +++ + +TSG++G PK H+ +
Sbjct: 178 ---EKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLK 234
Query: 416 TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
+ SD+ W +D GWI P GA V D
Sbjct: 235 AKMD-AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK--FDPLVILK 291
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
+ Y + AP + R L++ + ++ Y L+ +VGE + P + G
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG- 347
Query: 536 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595
I +++ QTETG + KPG I+D+KG + G +
Sbjct: 348 --LDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDI 403
Query: 596 CIKSSW---PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
I+ G F + ++ ++ GD +
Sbjct: 404 GIRVKPIRPIGIFSGYVDNPDKTAANI---RGDFWLLGDRGIK 443
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 4e-93
Identities = 91/433 (21%), Positives = 159/433 (36%), Gaps = 45/433 (10%)
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N N K A + + TY +L ++ + A+ L+ +GV +
Sbjct: 24 NFAAYLFRLN--ETRAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEER 75
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPK 319
+++ + + LP+A L G V V + + + VI S A
Sbjct: 76 ILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA------ 129
Query: 320 AIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
L V AL+ G + V + + + +++++
Sbjct: 130 ---LVQNVTQALESAEHDGCQLIV-----------SQPRESEPRLAPLFEELIDAAAPAA 175
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
+ +D F LY+SGSTGKPKG +HT K +DV + A
Sbjct: 176 KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
+ G P+ GA+ ++ PT D + + +++ T+FY PTL +++
Sbjct: 236 FAYGLGNGLTFPLSVGATAILMAERPT-AD--AIFARLVEHRPTVFYGVPTLYANMLVSP 292
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
N + + ++R+ S GE + F G C I D TE ++ G
Sbjct: 293 N--LPARADVAIRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG 347
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ G+ P G + + DE G + GE G L IK P A + + E+ T
Sbjct: 348 --AVEYGTTGRPVPGYEIELRDEAGHAVPDGE-VGDLYIKG--PSAAVMYWNNREKSRAT 402
Query: 619 YFKPFPGYYFTGD 631
+ + +GD
Sbjct: 403 FLG---EWIRSGD 412
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 4e-50
Identities = 75/391 (19%), Positives = 137/391 (35%), Gaps = 57/391 (14%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
A + D +TY+Q+ + A+ L +G+ KGD V + +P +E
Sbjct: 30 PRLQAYVEPSTD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A++GAV + ++ ++ + D KVVI ++DA +
Sbjct: 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAP---------SAPVIDAIRAQA 136
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G D G D + + + VE +D LF++Y
Sbjct: 137 DPPGTVTDW------------------IGADSLAERLRSAAADEPAVE-CGGDDNLFIMY 177
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TG PKGV+HT + A+++ D + D + + V +
Sbjct: 178 TSGTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI-FSAMR 235
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G +++ D+ + W ++ + +V I P ++ + + R
Sbjct: 236 GVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYF 289
Query: 515 GSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
+ G P+ + + + + TE+ G L +K GSA
Sbjct: 290 ITGGAPMPEALIKIYAAKN-------IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRA 342
Query: 572 FFGVQPVIVDEKGVEI---EGECSGYLCIKS 599
+ + GV EGE + IKS
Sbjct: 343 TMFTDVAVRGDDGVIREHGEGE----VVIKS 369
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 6e-48
Identities = 76/387 (19%), Positives = 139/387 (35%), Gaps = 54/387 (13%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A + LT+ L + +LA+ L GV GD V I E+ +
Sbjct: 20 PDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A A IGA+ V ++D +A + D P VV+ +DIV L
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTD---------YRDIVAGVLPSL 124
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
V + G ++D+ P A D +++
Sbjct: 125 G----GVKKAYAIGD-----------GSGPFAPFKDLASDTPF--SAPEFGAADGFVIIH 167
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
T+ G+P+G L + G ++ ++ A+ +DV +TG +
Sbjct: 168 TAAVGGRPRGALISQGN-LLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLG-LMLTLQQA 225
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G + V+ D ++ ++ +KVT+ ++ +++ + + SLR +
Sbjct: 226 GGASVIAAK----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA--QLA--SLRAV 277
Query: 515 GSVGEPINPSAWR-WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ P + N T+ Q+ET G + T P + +P SA P F
Sbjct: 278 TGLDTPETIERFEATCPN------ATFWATFGQSETSG-LSTFAP--YRDRPKSAGRPLF 328
Query: 574 GVQPVIVDEKGVEIE-GECSGYLCIKS 599
+VD + + GE G + ++
Sbjct: 329 WRTVAVVDAEDRPLPPGE-VGEIVLRG 354
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 4e-46
Identities = 60/391 (15%), Positives = 129/391 (32%), Gaps = 56/391 (14%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
G +AI + TY L + LA L + V +Y+ ++ I +
Sbjct: 15 GHHIAITDG------QESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILI 65
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
AC +++ + + + ++ +++ + ++ I D ++ A +
Sbjct: 66 HACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDI 125
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+G+ +NT V + P+ + +D +++
Sbjct: 126 TTNGL---------------LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMF 170
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSY---VT 448
TSG+TG K V T +A K + + + H V
Sbjct: 171 TSGTTGPQKAVPQTFRN-HYASAIGCKESLGFDRDTNWLSVL-------PIYHISGLSVL 222
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
++ G +V + + ++ + ++ ++T P + LM+ G +
Sbjct: 223 LRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQG-----LHEP 273
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568
+L+ + G ++ + PI +++ TET +T P +P +
Sbjct: 274 YNLQKILLGGAKLSATMIETAL----QYNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
P V I + GE L IK
Sbjct: 330 GMPSANVDVKIKNPNKEGH-GE----LMIKG 355
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-43
Identities = 74/385 (19%), Positives = 139/385 (36%), Gaps = 50/385 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
K+AI A ++Y++L+ + ++AN L G++ GD V +E + L
Sbjct: 17 HKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYL 71
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A R G V+ + ++ L I D +PK+V+ + +D + A +
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPS---------KRDGIAAIAAKVG 122
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ ++ D A+D +LYT
Sbjct: 123 ATVETLG-------------------PDGRGSLTDAAAGASEAFATIDRGADDLAAILYT 163
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+TG+ KG + + + + T + + P DV G + +
Sbjct: 164 SGTTGRSKGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFAR 222
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
S++ D + D++ + T+ PT L++ +T+ + +R+
Sbjct: 223 GSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFI 274
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
S P+ R + G + + + TET M T P + PG+ GV
Sbjct: 275 SGSAPLLADTHREWSAKTG---HAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGV 329
Query: 576 QPVIVD-EKGVEIE-GECSGYLCIK 598
+ D E G E+ G+ G + +K
Sbjct: 330 SARVTDPETGKELPRGD-IGMIEVK 353
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-41
Identities = 71/399 (17%), Positives = 133/399 (33%), Gaps = 57/399 (14%)
Query: 215 GDKVAIYWEANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI 272
G+K AI ++ + ++ + +LA+ + GV+KG+ V + +P ++ +
Sbjct: 33 GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92
Query: 273 AMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD 332
+ A R+ A + + S L + D + ++ + L + L+
Sbjct: 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSM---------LYENFKPVLE 143
Query: 333 ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC-EVEWVDAEDPLF 391
+ + V G +V+ V+ ED
Sbjct: 144 KTGVERVFVV-------------------GGEVNSLSEVMDSGSEDFENVKVNPEEDVAL 184
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSY-- 446
+ YT G+TG PKGV+ T + A A D HS
Sbjct: 185 IPYTGGTTGMPKGVMLTHFN-LAANALQLAVATGLSHMDTIVGCM-------PMFHSAEF 236
Query: 447 -VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+ + G VV + + + ++KYK T + P + L+
Sbjct: 237 GLVNLMVTVGNEYVVM---GMF-NQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT 292
Query: 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ----TETGGFMITPLPGAW 561
Y L+V + P+ P+ + + Q TE M+T P
Sbjct: 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACP-MVTTNPPLR 351
Query: 562 PQKPGSATFPFFGVQPVIVD-EKGVEIE-GECSGYLCIK 598
K + P ++ ++ E G E+ GE SG + I+
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE-SGEIVIR 389
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 4e-39
Identities = 75/391 (19%), Positives = 147/391 (37%), Gaps = 45/391 (11%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
K + + TY+ + ++A+ L IG+++GD ++++LP E +A
Sbjct: 36 SSKPCLI----NGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L + GA+ + + LA+ + K++IT + D
Sbjct: 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT------------QACYYEKVKDFA 139
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+S + V +C+ + + ++ + + +D + L Y
Sbjct: 140 RESDVKV-MCVDSAPDGCLH-------------FSELTQADENEAPQVDISPDDVVALPY 185
Query: 395 TSGSTGKPKGVLHTTGGY---MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TG PKGV+ T G + + DV C I + +
Sbjct: 186 SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
+ GA +++ P + + G +++KYKV+I P ++ S+ + + + ++ SL
Sbjct: 246 LRVGAPILIM---PKF-EIGSLLGLIEKYKVSIAPVVPPVMMSIAK--SPDLDKHDLSSL 299
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGSA 568
R++ S G P+ + + TE G + L A KPG+
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQ--ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357
Query: 569 TFPFFGVQPVIVD-EKGVEIEGECSGYLCIK 598
+ IVD E G + G +CI+
Sbjct: 358 GTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 8e-38
Identities = 80/422 (18%), Positives = 148/422 (35%), Gaps = 48/422 (11%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D +A+ + L+Y +L Q LA L+ G+K G+ ++ L + EL I
Sbjct: 39 SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITF 92
Query: 275 LACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD 332
A ++G V A L +P ++I R D ++ +
Sbjct: 93 FALLKLGVA--PVLALFSHQRSELNAYASQIEPALLIAD----RQHALFSGDDFLNTFVT 146
Query: 333 ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFL 392
E + S+ V D + QD + A++ +
Sbjct: 147 EHS----SIRVVQLLN-------------DSGEHNLQDAINHPAEDFTATPSPADEVAYF 189
Query: 393 LYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-TYGP 451
+ G+TG PK + T Y ++ + Y C S + G
Sbjct: 190 QLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGV 248
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
L G +VV+ P + + +++K++V + P V ++ E +R SL
Sbjct: 249 FLAGGTVVL----AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASL 304
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
++L G ++ + +G C + + E G T L + + + +P
Sbjct: 305 KLLQVGGARLSATLAARIPAEIG---CQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGYP 360
Query: 572 -FFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFT 629
+ + D +G + +GE G L + P FR Y + + F G+Y +
Sbjct: 361 MCPDDEVWVADAEGNPLPQGE-VGRLMTRG--PYTFRGYYKSPQHNASA-FDA-NGFYCS 415
Query: 630 GD 631
GD
Sbjct: 416 GD 417
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 9e-38
Identities = 69/389 (17%), Positives = 122/389 (31%), Gaps = 53/389 (13%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ P LT+++L +V +A L G++ V + P ++ IA+
Sbjct: 16 PDHCALA----VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAI 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R+GAV +++ S LA+ I + + + + + DA
Sbjct: 72 LALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----------VADAIFQSG 121
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ + D+ Y E + P F+ Y
Sbjct: 122 SG---------------------ARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFY 160
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
TSG+TG PK + + + +V + G V +
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
+ VV E + +V + +VT + PT + +L + SLR
Sbjct: 221 LDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ G + + + + + TE + K G+ P F
Sbjct: 277 VTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNS-LYMRQP----KTGTEMAPGF 328
Query: 574 GVQPVIVDEKGVEIE----GECSGYLCIK 598
+ IV G E GE G L +
Sbjct: 329 FSEVRIVRIGGGVDEIVANGE-EGELIVA 356
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-37
Identities = 66/398 (16%), Positives = 120/398 (30%), Gaps = 69/398 (17%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L D+ A+ + + +LTY++L A + V ++
Sbjct: 28 LSPAPTGAPADRPALRFG------ERSLTYAELAAAAGATAG-----RIGGAGRVAVWAT 76
Query: 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
ME +A++A G + LA + D P +V+ + P L+
Sbjct: 77 PAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALER 136
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
+ A + D
Sbjct: 137 VDVDVRARGA-------------------------------------------VPEDGAD 153
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
DP ++YTSG+TG PKG + + T A+ + DV + G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD-GNEYVT 504
GP+ G SV + + ++ T+ + PT+ + +
Sbjct: 213 LGILGPLRRGGSVRHLGR----FSTEGAARELND-GATMLFGVPTMYHRIAETLPADPEL 267
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
+ R+L S + G + + + TET G +
Sbjct: 268 AKALAGARLLVSGSAALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPR 322
Query: 565 PGSATFPFFGVQPVIVDEKGVEI---EGECSGYLCIKS 599
G+ P GV+ +V+E G I +GE G + ++
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG 360
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 4e-37
Identities = 62/406 (15%), Positives = 124/406 (30%), Gaps = 37/406 (9%)
Query: 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257
+ + R A + +A D ++ +TY++ + +LA +K G+
Sbjct: 22 AGEQLHKAMKRY--ALVPGTIAFT----DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 75
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRG 317
+++ ++ + +L IG + ++ L + +P VV
Sbjct: 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV------- 128
Query: 318 PKAIHLKDIVDAALDECAKSGISVD-VCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 376
K + L+ K I + + + + + + P
Sbjct: 129 -----SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP 183
Query: 377 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM--VHTATTFKYAFDYKPSDVYWC 434
+ + ++ +SGSTG PKGV A + P
Sbjct: 184 ----ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILS 239
Query: 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494
G T G ++ G VV+ + + YK+ PTL
Sbjct: 240 VVPFHHGFGMF-TTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 554
+ + + +Y +L + S G P++ I + TET
Sbjct: 295 FAK--STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTS--A 348
Query: 555 TPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKS 599
+ KPG+ + +VD + G + G LC++
Sbjct: 349 ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG 394
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 7e-36
Identities = 68/382 (17%), Positives = 121/382 (31%), Gaps = 39/382 (10%)
Query: 226 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285
+ +Y++ L++ C L L++ G+ + + E I ++A IG +
Sbjct: 46 NAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITS-----NAVKRGPKAIHLKDIVDAALDECAKSGIS 340
++ L + KP +V +S + +K IV +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
+D + + K VE E ++ +SGSTG
Sbjct: 166 LDTFIKRNTPPGFQASSFKT--------------------VEVDRKEQVALIMNSSGSTG 205
Query: 401 KPKGVLHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458
PKGV T A Y P G T G ++ G V
Sbjct: 206 LPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF-TTLGYLICGFRV 264
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
V+ + D + YK T PTL L + +E + +Y +L + S G
Sbjct: 265 VML---TKF-DEETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIASGG 318
Query: 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P++ + + TET +I KPG++ +
Sbjct: 319 APLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAK 374
Query: 579 IVD-EKGVEIEGECSGYLCIKS 599
++D + + G +C+K
Sbjct: 375 VIDLDTKKSLGPNRRGEVCVKG 396
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-35
Identities = 74/392 (18%), Positives = 142/392 (36%), Gaps = 37/392 (9%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
K + + TYS + Q+A +GV + D V++ LP E ++
Sbjct: 75 ATKPCLI----NGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA + GA + F+ +A++ K++IT VD
Sbjct: 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITE------------ARYVDKIKPLQ 178
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G+ + VC+ + ++ + Q VE + +D + L Y
Sbjct: 179 NDDGVVI-VCIDDNESVPIPEGCLRFTE----LTQSTTEASEVIDSVE-ISPDDVVALPY 232
Query: 395 TSGSTGKPKGVLHTTGGY---MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TG PKGV+ T G + + DV C I + +
Sbjct: 233 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCG 292
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
+ GA++++ P + + +++ + KVT+ P +V ++ + + +Y S+
Sbjct: 293 LRVGAAILIM---PKF-EINLLLELIQRCKVTVAPMVPPIVLAIAK--SSETEKYDLSSI 346
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG-FMITPLPGA--WPQKPGSA 568
RV+ S P+ + + + TE G ++ +P K G+
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPN--AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGAC 404
Query: 569 TFPFFGVQPVIVD-EKGVEIEGECSGYLCIKS 599
+ IVD + G + G +CI+
Sbjct: 405 GTVVRNAEMKIVDPDTGDSLSRNQPGEICIRG 436
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 86/431 (19%), Positives = 147/431 (34%), Gaps = 49/431 (11%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L +++ +AI + L+Y +L + LA L + G+ KGD ++ LP
Sbjct: 36 LTVGVQS-HPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 266 MLMELPIAMLACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+ E I A + G V V+ A L I +PK++I S +
Sbjct: 89 NVAEFYIVFFALLKAGVV--VLNALYSHRQYELNAFIKQIQPKLLIGSRQHE----VFSN 142
Query: 324 KDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
+D+ D I + + + G W + + +
Sbjct: 143 NQFIDSLHDVNLSPEIILML------------NHQATDFGLLDWIETPAETFV---DFSS 187
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A++ F + GSTG PK + T Y ++ + C
Sbjct: 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDY-DYSVRASAEICGLNSNTRLLCALPAPHNFM 246
Query: 444 -HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
S G + G VV+ P+ + I+ +++V + P+ V + +
Sbjct: 247 LSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ- 301
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ +SL++L G S R V+ C + + E G T L +
Sbjct: 302 -YKDQIQSLKLLQVGGASFPESLARQVPEVLN---CKLQQVFGMAE-GLVNYTRLDDSDE 356
Query: 563 QKPGSATFPFFGVQPV-IVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
Q + P + IVDE+ E+ GE G L + P F Y E F
Sbjct: 357 QIFTTQGRPISSDDEIKIVDEQYREVPEGE-IGMLATRG--PYTFCGYYQSPEHNSQV-F 412
Query: 621 KPFPGYYFTGD 631
YY++GD
Sbjct: 413 DE-DNYYYSGD 422
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 86/433 (19%), Positives = 147/433 (33%), Gaps = 57/433 (13%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L GD++AI + +Y +L + +LA + +G+++ D V++ LP
Sbjct: 31 LRDRAAK-YGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 266 MLMELPIAMLACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+ E + A R+GA+ VFA S + + I +A
Sbjct: 84 NIKEFFEVIFALFRLGAL--PVFALPSHRSSEITYFCEFAEAAAYIIPDAYS----GFDY 137
Query: 324 KDIVDAALDECA--KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+ + + K+ I + + +D+ + EV
Sbjct: 138 RSLARQVQSKLPTLKNIIVAG------------------EAEEFLPLEDLHTEPVKLPEV 179
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
+ D FL + GSTG K + T Y +++ S VY
Sbjct: 180 ---KSSDVAFLQLSGGSTGLSKLIPRTHDDY-IYSLKRSVEVCWLDHSTVYLAALPMAHN 235
Query: 442 TG-HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
S G + G VV+ P ++ ++++ KVTI P L M +
Sbjct: 236 YPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS 291
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
R SL+VL G + A R V G C + + E T L
Sbjct: 292 --SRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAEGLVNY-TRLDDP 345
Query: 561 WPQKPGSATFPFF-GVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ P + + D+ +++ GE +G+L + P R Y E +
Sbjct: 346 EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE-TGHLLTRG--PYTIRGYYKAEEHNAAS 402
Query: 619 YFKPFPGYYFTGD 631
F G+Y TGD
Sbjct: 403 -FTE-DGFYRTGD 413
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 69/340 (20%), Positives = 112/340 (32%), Gaps = 80/340 (23%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
+K + + + ++ T+TY QL Q +A L+ G K GD V++ + L A
Sbjct: 25 PNKKSCTFL--NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82
Query: 275 LACARIGAVHSVVFAGFSSDSLA--QRIM-DCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331
L C G + ++ L QRI+ + KP +V+ + D ++
Sbjct: 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK----FTADELNTNP 138
Query: 332 DECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF 391
I+++ + R WQ + D F
Sbjct: 139 KFLKIPAIALE----------------SIELNRSSSWQPTSI-----------KSNDIAF 171
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY--W--CTADCGWITGHSYV 447
L YTSGST PKGV+ + + + F +F + W D G I
Sbjct: 172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFT-SFHMNDETIIFSWLPPHHDMGLIGCIL-- 228
Query: 448 TYGPMLNGASVVV-----FEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGN- 500
P+ G ++ F P SW + KYK TI +P N
Sbjct: 229 --TPIYGGIQAIMMSPFSFLQNP------LSWLKHITKYKATISG-SP----------NF 269
Query: 501 --EYVTRYSRK---------SLRVLGSVGEPINPSAWRWF 529
+Y + R+ S + EP+ F
Sbjct: 270 AYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHF 309
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 61/347 (17%), Positives = 104/347 (29%), Gaps = 85/347 (24%)
Query: 215 GDKVAIYW---EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
A + E + GV TLT+SQL ++ +A L G GD V+I P +E
Sbjct: 38 PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYV 96
Query: 272 IAMLACARIGAVHSVVFAGFSSDSLA--QRIM-DCKPKVVITSNAVKRGPKAIHLKDIVD 328
+A L + G + + + ++ D P ++T+++ + V
Sbjct: 97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-----VDDVVQHVA 151
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388
E S I VD+ + +
Sbjct: 152 RRPGESPPSIIEVDLLDLDAPNG----------------YTFKED-----------EYPS 184
Query: 389 PLFLLYTSGSTGKPKGVLHT-----TGGYMVHTATTFKYAFDYKPSDVY--W--CTADCG 439
+L YTSGST P GV+ + + + P+ W D G
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTY----PDSGRSW-DIVDKYKVTIFYTAPTLVRS 494
+ G P+L G V+ +P P W ++ AP
Sbjct: 245 LVIGIC----APILGGYPAVLT--SPVSFLQRP---ARWMHLMASDFHAFSA-AP----- 289
Query: 495 LMRDGN---EYVTRYSRK---------SLRVLGSVGEPINPSAWRWF 529
N E R + ++ + S E + + + F
Sbjct: 290 -----NFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRF 331
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 5e-21
Identities = 67/340 (19%), Positives = 117/340 (34%), Gaps = 88/340 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D A+ + TL+Y +L ++ ++A L+ G KG V +Y +EL I +L
Sbjct: 479 DAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532
Query: 276 ACARIGAVHSVVFAGFSSDSL-------AQRI--M--DCKPKVVITSNAVKRGPKAIHLK 324
+ GA + L RI M D ++T +K
Sbjct: 533 GVLKAGAAY-----------LPVDPKLPEDRISYMLADSAAACLLTHQEMK--------- 572
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
E +G ++ + D + + + +
Sbjct: 573 ----EQAAELPYTGTTLFI------------------DDQTRF------EEQASDPATAI 604
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
D DP +++YTSG+TGKPKG + T AF D +++
Sbjct: 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFS--DQDT--------FLSVS 654
Query: 445 SYV-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
+Y Y MLN A +++ + T D+ R D++ + V + + L L
Sbjct: 655 NYAFDAFTFDFYASMLNAARLIIADEH-TLLDTERLTDLILQENVNVMFATTALFNLLTD 713
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
G + K LR + GE + R ++G +
Sbjct: 714 AGED-----WMKGLRCILFGGERASVPHVRKALRIMGPGK 748
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-20
Identities = 48/340 (14%), Positives = 103/340 (30%), Gaps = 84/340 (24%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
V AG +D + + + K+++++ AV
Sbjct: 70 G---------CVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV------------ 108
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
+ + +S D N V
Sbjct: 109 ---TVTDLPVRIVSEDNLKDIFFTHKGNTPNP----------------------EHAVKG 143
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
++ +++YTSGSTG PKGV T +V F+ + V ++ +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNC-LVSFTKWAVEDFNLQTGQV--------FLNQAPF 194
Query: 447 V-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
Y ++ G ++ + +++ + ++ + P+ +
Sbjct: 195 SFDLSVMDIYPSLVTGGTLWA---IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ + + +++ GE + R +
Sbjct: 252 EASF--SESMLPNMKTFLFCGEVLPNEVARKLIERFPKAT 289
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 2e-19
Identities = 45/343 (13%), Positives = 102/343 (29%), Gaps = 91/343 (26%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA-VIIYLPMLMELPIAM 274
A + +LTY +L +Q + A ++ + + +++Y M + ++
Sbjct: 16 QTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSF 69
Query: 275 LACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
L V AG S+ +A+ I +++I
Sbjct: 70 LG---------SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIH--------------- 105
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
A L A V ++ + + +WV
Sbjct: 106 --AAGLSIDAVGQQIQTVSAEELLENEGGSVS----------------------QDQWVK 141
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+ +++YTSGSTG PKGV + + F + ++
Sbjct: 142 EHETFYIIYTSGSTGNPKGVQISAAN-LQSFTDWICADFPVSGGKI--------FLNQAP 192
Query: 446 YV-------TYGPMLNGASVVVFEGAPTYPDSGRS----WDIVDKYKVTIFYTAPTLVRS 494
+ Y + +G ++ D+ ++ + K + ++ + P+ V+
Sbjct: 193 FSFDLSVMDLYPCLQSGGTLHC---VT--KDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ D ++ GE + S + ++
Sbjct: 248 CLMDPG--FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAK 288
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 3e-19
Identities = 48/329 (14%), Positives = 94/329 (28%), Gaps = 73/329 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ AI ++ Y QLL QL++YL + + G + +Y E +L
Sbjct: 42 HREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A G + + + A+ ++++ + A
Sbjct: 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD-----------------CSTTPTPA 138
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
V V +P P A+ ++ ++
Sbjct: 139 NGLPCVPV--------------------------RHLPAAPASVARPCFAADQIAYINFS 172
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------T 448
SG+TG+PK + T G AF P ++
Sbjct: 173 SGTTGRPKAIACTHAGITRLCLGQSFLAFA--PQMR--------FLVNSPLSFDAATLEI 222
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
+G +LNG V+ + D G ++ + + +L +L+ +
Sbjct: 223 WGALLNGGCCVLND--LGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD-----CL 275
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
LR L + G+ ++ R
Sbjct: 276 GGLRQLLTGGDILSVPHVRRALLRHPRLH 304
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 5e-19
Identities = 44/332 (13%), Positives = 85/332 (25%), Gaps = 68/332 (20%)
Query: 216 DKVAIYWEANDPGVDA----TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
+ A+ G TY +L + Q+AN + + G A+ + L +
Sbjct: 35 EWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASLH-GRAIAVSLDRSLIAF 93
Query: 272 IAMLACARIGAVHSVVFA------GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
++ + G G +D + + D + +
Sbjct: 94 AIIVGIMKSGN------TYVPIEAGLPNDRKSFLLRDSRAAMAFV--------------- 132
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
+ + V D ++ + + + T +
Sbjct: 133 --CDNNFDGVELPPETKVL-----------------DTKNQSFIENLSTQDTSDILNNYP 173
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+LLYTSGSTG PKGV + + + + ++ S
Sbjct: 174 ENLDAYLLYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNVAPKSLELGGVGKFLCLAS 232
Query: 446 YV-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G V + VT P+L+
Sbjct: 233 RAFDVHIGEMFLAWRFGLCAVT---GERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV 289
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530
+ L LG GE + P + +
Sbjct: 290 PEDA------PHLVYLGVGGEKMTPRTQQIWS 315
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 7e-19
Identities = 47/348 (13%), Positives = 95/348 (27%), Gaps = 100/348 (28%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D TY QL + +A ++ + + V+++ ++ +
Sbjct: 19 DFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A + +G + + + I KP ++I + I L
Sbjct: 73 A---------LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL--- 120
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
V L + + P + V
Sbjct: 121 ----------------VSL-------------------SEIESAKLAEMPYERTHS-VKG 144
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMV-H-------TATTFKYAFDYKPSDVYWCTADC 438
+D ++++TSG+TG+PKGV + H AFD
Sbjct: 145 DDNYYIIFTSGTTGQPKGV-------QISHDNLLSFTNWMIEDAAFDVPKQPQ------- 190
Query: 439 GWITGHSYV-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAP 489
+ Y + G ++ P D + + + + V I+ + P
Sbjct: 191 -MLAQPPYSFDLSVMYWAPTLALGGTLFA---LPKELVADFKQLFTTIAQLPVGIWTSTP 246
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ M + + +L GE + S R F ++
Sbjct: 247 SFADMAMLSDDFCQAKMP--ALTHFYFDGEELTVSTARKLFERFPSAK 292
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 7e-19
Identities = 87/459 (18%), Positives = 139/459 (30%), Gaps = 114/459 (24%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP----MLMEL 270
G K + G TY+++ Q+ +L L+ +GV GD V L
Sbjct: 32 GRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE-- 87
Query: 271 PIAMLACARIGAV-HSV---VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A A +GAV H+ + +A + + KV++ L +
Sbjct: 88 --AYFAVPGMGAVLHTANPRLSP----KEIAYILNHAEDKVLLFDPN---------LLPL 132
Query: 327 VDAALDECAKSGISVDVC-------LTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
V+A E V + L YE
Sbjct: 133 VEAIRGELKTVQHFVVMDEKAPEGYLAYEE----------ALGEEADPV----------- 171
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVY------ 432
+ YT+G+TG PKGV+++ ++H+ A + DV
Sbjct: 172 --RV-PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 228
Query: 433 -----WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYT 487
WC + G V GP L+ AS+ ++ D VT
Sbjct: 229 FHVNAWCLPYAATLVGAKQVLPGPRLDPASL---------------VELFDGEGVTFTAG 273
Query: 488 APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF----FNVVGDSRCPISDT 543
PT+ +L T + K+LR L G S F V
Sbjct: 274 VPTVWLALADYLES--TGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQ--------G 323
Query: 544 WWQTETGGFM-ITPLPGAWPQKPGSATF--------PFFGVQPVIVDEKGVEIE--GECS 592
+ TET + + P V+ + DE+G + G+
Sbjct: 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL 383
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631
G + +K W YG+ E + G++ TGD
Sbjct: 384 GEVQLKGPW--ITGGYYGNEEATRSALTP--DGFFRTGD 418
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 5e-18
Identities = 56/331 (16%), Positives = 111/331 (33%), Gaps = 86/331 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ VAI E + LTY +L + QLA + G+ K V I + ++L I +L
Sbjct: 54 NNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A V+ AG + + + + D + ++++T +
Sbjct: 108 A---------VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV----------- 147
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
+ +G + I ++ + +
Sbjct: 148 --HLIHNIQFNGQVEIF------------------EEDTIKIREGTNLHVP------SKS 181
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
D +++YTSG+TG PKG + G + + F+ + + D S
Sbjct: 182 TDLAYVIYTSGTTGNPKGTMLEHKG-ISNLKVFFENSLNVTEKDR--------IGQFASI 232
Query: 447 V-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
+ +L GAS+ + T D + +++ ++T+ PT V L +
Sbjct: 233 SFDASVWEMFMALLTGASLYIILKD-TINDFVKFEQYINQKEITVITLPPTYVVHLDPER 291
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530
S++ L + G +PS +
Sbjct: 292 I--------LSIQTLITAGSATSPSLVNKWK 314
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 5e-17
Identities = 43/297 (14%), Positives = 84/297 (28%), Gaps = 39/297 (13%)
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG---GYMV 414
R ++VP+ + A+ + + G+TG PK V+ +
Sbjct: 70 DISHCLRQEPVANLVPQ--------GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALIS 121
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV-------------- 460
+ +++ + I G L G +
Sbjct: 122 WRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEG 181
Query: 461 -FEGAPTYPDSG--RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517
Y + + + + T P ++R L++ V ++SL +
Sbjct: 182 DTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITLG 239
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP 577
G +N ++ + + C S ++ T G + L + +
Sbjct: 240 GTELNLDEIKFIASEILP-DCEFSASYGSTSALG-VSRSLLITSESQQVIYDSFSPFITY 297
Query: 578 VIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
+VD + GE G + + P AF ER G F GD
Sbjct: 298 DVVDSITAQTVEYGER-GNVIVTHLSPWAFYPRV--AERDTAIRLPGVSG--FAGDR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 72/584 (12%), Positives = 135/584 (23%), Gaps = 203/584 (34%)
Query: 6 QPHVDGHYYYYYNNNVCLSNLGVGGGASRGSTVGASSYSKPLNKSSSPPLKLIRQS---- 61
QP + Y + + N ++K N S P +RQ+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN---------------QVFAK-YNVSRLQPYLKLRQALLEL 147
Query: 62 -----------GGGGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRL 110
G G +A C + KI L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLS-----------YKVQCK------MD---FKIFWL 187
Query: 111 NAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF-WADIASEFYW 169
N L + ++ Q + S
Sbjct: 188 N---LKN--CNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 170 KEKWGQRVCSENL----DVRKGNVKIEWFKGGITNICYNC--L----DRNIEAGLGDKVA 219
K K + L +V+ F C L + + L
Sbjct: 239 KSKPYENC----LLVLLNVQNAKA-WNAFNLS-------CKILLTTRFKQVTDFLSAATT 286
Query: 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279
+ + TLT ++ L YL + D LP + L +
Sbjct: 287 THISLDH--HSMTLTPDEVKS---LLLKYL---DCRPQD-----LPREV-LTTNPRRLSI 332
Query: 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDECAKSG 338
I +++ G + K + L +S
Sbjct: 333 IAE------------------------------SIRDGLATWDNWKHVNCDKLTTIIES- 361
Query: 339 ISVDVCLTYENQS-----AMTRENTK---------WQDGRDIWWQDVVPKYPTKCEVEWV 384
S++V E + ++ + W D VV K VE
Sbjct: 362 -SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 385 DAEDP---------LFLLYTSGSTGKPKGVLHTT--GGYMVHTATTFKYAFDYK---PSD 430
+ P ++L + LH + Y + + D D
Sbjct: 419 --KQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPK----TFDSDDLIPPYLD 470
Query: 431 VYWCTADCGWITGHSYVTY--GPMLNGASVVVFEGAPTYPD----------SGRSWDI-- 476
Y+ +S++ + + + + +F + D +W+
Sbjct: 471 QYF----------YSHIGHHLKNIEHPERMTLFR--MVFLDFRFLEQKIRHDSTAWNASG 518
Query: 477 --------VDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
+ YK I P R L+ +++ + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLIC 561
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 635 | |||
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 96.13 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 95.24 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 94.68 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 94.16 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 92.04 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 91.78 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 89.97 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.6 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.17 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 83.96 |
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-73 Score=644.47 Aligned_cols=484 Identities=52% Similarity=1.008 Sum_probs=404.0
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~ 221 (635)
.++|.++++++++||+.+|+++++.+.|.++++ +++..+. ....+..+||+++.+|+++++|+++ ++++|+++|++
T Consensus 21 ~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~wf~~~~~n~~~~~l~~~-a~~~pd~~Al~ 96 (652)
T 1pg4_A 21 PEQYETKYKQSINDPDTFWGEQGKILDWITPYQ-KVKNTSF--APGNVSIKWYEDGTLNLAANCLDRH-LQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCS-CCEEEEC--CTTCCEEEESTTCEECHHHHHTGGG-HHHHTTSEEEE
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCc-ccccCcc--ccCCCCCEECCCCChhHHHHHHHHH-hccCCCceEEE
Confidence 468999999999999999999987789998876 4553221 0012256999999999999999999 78899999999
Q ss_pred EEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 006688 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (635)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~ 301 (635)
+.+++.+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 97 ~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 97 WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp EECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred EEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 86543345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCc
Q 006688 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381 (635)
Q Consensus 302 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (635)
++++++||+++......+...++..+.++.... ....+++++.++.... ...+...+...|.+++.......+.
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKRTGS----DIDWQEGRDLWWRDLIEKASPEHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTST--TCCSCCEEEEECSSCC----CCCCCBTTEEEHHHHHTTSCSCCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcC--CcCCCCEEEEEeCCCC----cccccCCCceeHHHHHhhcCCCCCc
Confidence 999999999988776666666666666544321 0124567777654320 0111112234566665443332334
Q ss_pred ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 382 ~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
....++|++||+|||||||+||||+++|++++.+........++++++|++++.+|++|+.++.+.++.+|++|+++++.
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 45578999999999999999999999999987766555666789999999999999999999768899999999999999
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
++.+..+++..+++.|++++||+++++|++++.|++...+.....++++||.+++|||++++++++++.+.++..+++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 87555469999999999999999999999999999875433345678999999999999999999999999875458899
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~ 621 (635)
|.||+||+++.++...+...+.+++++|+|++|++++|+|++|+++|.|+.|||+|+||+|++++|||++|++|.+.|+.
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~ 490 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS 490 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh
Confidence 99999999976665543333467789999999999999999999999999999999998889999999999999999987
Q ss_pred CCCceEEcCCeEec
Q 006688 622 PFPGYYFTGDGCSR 635 (635)
Q Consensus 622 ~~~g~yrTGDlgr~ 635 (635)
..+|||+|||+||+
T Consensus 491 ~~~g~y~TGDlg~~ 504 (652)
T 1pg4_A 491 TFKNMYFSGDGARR 504 (652)
T ss_dssp SSTTSEEEEEEEEE
T ss_pred cCCCEEECCcEEEE
Confidence 67899999999985
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-73 Score=645.58 Aligned_cols=497 Identities=46% Similarity=0.860 Sum_probs=405.1
Q ss_pred CChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhh-ccccccccccccccccccc-CCCCccccCCCCcchHHHHHH
Q 006688 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVR-KGNVKIEWFKGGITNICYNCL 206 (635)
Q Consensus 129 ~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~l 206 (635)
.+.+|....... ++.|.++++++++||+.+|+++++. +.|.++++ +++..+++.. ...+..+||+++.+|+++++|
T Consensus 11 ~~~~~~~~~~~~-~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l 88 (663)
T 1ry2_A 11 SSGLVPRGSHMG-LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFD-KVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV 88 (663)
T ss_dssp --------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCS-CSBCBCSSSCSBCSTTCCBSTTCEECHHHHHT
T ss_pred cccccccccCCC-hhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCc-eeecCccccccCCCCCCCcCCCCCccHHHHHH
Confidence 345555544433 5789999999999999999999877 89999887 5664332100 011125999999999999999
Q ss_pred hhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEE
Q 006688 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (635)
Q Consensus 207 ~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~v 285 (635)
+++ ++++|+++|+++.+++.+..+++||+||+++++++|+.|+ ++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 89 ~~~-a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 89 DRH-ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHS 167 (663)
T ss_dssp HHH-HTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHH-hccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence 999 8899999999986543345689999999999999999999 99999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCc
Q 006688 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (635)
Q Consensus 286 pld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (635)
|+++.++.+++.++++++++++||+++......+...++..++++.. ..+.++++++++..... ...+...+.
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vi~~~~~~~~---~~~~~~~~~ 240 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR----ETPGVRHVLVYRKTNNP---SVAFHAPRD 240 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT----SCTTCCEEEEECSSCCS---SCCCCSSSE
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH----hCCCCceEEEEecCCCC---ccccCCCcc
Confidence 99999999999999999999999999988777777777766655432 22456777777643200 011112233
Q ss_pred chhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchh
Q 006688 366 IWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445 (635)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~ 445 (635)
..|.+++.......+.....++|++||+|||||||+||||+++|++++.+........++++++|++++.+|++|+.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~ 320 (663)
T 1ry2_A 241 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 320 (663)
T ss_dssp EEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHH
T ss_pred ccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhH
Confidence 45666554433333344567899999999999999999999999998776656666679999999999999999999977
Q ss_pred HHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHH
Q 006688 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (635)
Q Consensus 446 ~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l 525 (635)
+.++.+|+.|+++++.++.+..+++..+++.|++++||+++++|++++.|.+...+.....++++||.+++|||++++++
T Consensus 321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 400 (663)
T 1ry2_A 321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400 (663)
T ss_dssp HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHH
Confidence 88899999999999998765556999999999999999999999999999887543334567899999999999999999
Q ss_pred HHHHHHHhCCCCcccccccccccccccccccCC-CCCCCCCCCCCCCCCCCeEEEEcC-CCCccCC-CcceEEEEecCCC
Q 006688 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSSWP 602 (635)
Q Consensus 526 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~-g~~GEL~i~g~~~ 602 (635)
++++.+.+|..+++++|.||+||+++.++...+ ...+.+++++|+|++|++++|+|+ +|++++. |+.|||+|+||+|
T Consensus 401 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p 480 (663)
T 1ry2_A 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP 480 (663)
T ss_dssp HHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCT
T ss_pred HHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCC
Confidence 999999987545889999999999876655433 233567899999999999999998 9999998 9999999999888
Q ss_pred cchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 603 ~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|||++|++|.+.|+...+|||+|||+|++
T Consensus 481 ~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~ 513 (663)
T 1ry2_A 481 SFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAK 513 (663)
T ss_dssp TSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEE
T ss_pred chhcccccChHHHHHhhhcCCCCEEEcCCEEEE
Confidence 999999999999999998767899999999985
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-68 Score=647.07 Aligned_cols=514 Identities=17% Similarity=0.199 Sum_probs=395.3
Q ss_pred CCCCCCCCCccceeeecCCCceEEEeccCCCCCCCCCCCCC--CCCccccccccCCCCCCCCCcccchhhhhhcccCCcC
Q 006688 45 KPLNKSSSPPLKLIRQSGGGGAVVMASSGCNNNNGNNSKKM--KTESFLRHVESLASFPSGAGKISRLNAVILGEALSSE 122 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~~~ 122 (635)
+.+....-|+.+++|..+.+ .+|+..-.+.|........ ....... ..... ..+.++|||++.+.+++++.+.
T Consensus 327 ~a~~hq~~p~~~i~~~l~~~--~lf~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~--~~~~~~~dL~l~~~~~~~l~~~ 401 (1304)
T 2vsq_A 327 QSEPHQYVPLYDIQSQADQP--KLIDHIIVFENYPLQDAKNEESSENGFD-MVDVH--VFEKSNYDLNLMASPGDEMLIK 401 (1304)
T ss_dssp HHGGGTTSCHHHHHHSSSCS--SSCCCEEEECSSCHHHHSCCCHHHHSEE-EEEEE--ECCCCCSSEEEEEECSSSCEEE
T ss_pred HhhhcccCCHHHHHHHhCCC--cccceeEEEeecccccccccccccCCce-eEeee--cccccccCeEEEEecCCcEEEE
Confidence 45667788999999988732 2232222222221110000 0000000 00110 1246899999998876667777
Q ss_pred CCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHH
Q 006688 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202 (635)
Q Consensus 123 ~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 202 (635)
+.|++++|+++++++|+++|.++|++++++|+.+++++.. +...+.. +++ ..++....+ ++. .++
T Consensus 402 ---~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~-l~~~e~~--~~~-~~~~~~~~~-----~~~---~~l 466 (1304)
T 2vsq_A 402 ---LAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINL-VDDRERE--FLL-TGLNPPAQA-----HET---KPL 466 (1304)
T ss_dssp ---EEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCC-CCHHHHH--HHH-TTTSCCCCC-----CCC---CCH
T ss_pred ---EEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCC-CCHHHHH--HHH-HhcCCCCCC-----CCC---CCH
Confidence 9999999999999999999999999999999999988842 3322221 122 112222111 111 248
Q ss_pred HHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCC
Q 006688 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGA 282 (635)
Q Consensus 203 ~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga 282 (635)
+++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|+
T Consensus 467 ~~~~~~~-~~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~ 539 (1304)
T 2vsq_A 467 TYWFKEA-VNANPDAPALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA 539 (1304)
T ss_dssp HHHHHHH-HHHCTTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHhCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 9999999 89999999999644 7899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCC
Q 006688 283 VHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362 (635)
Q Consensus 283 ~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 362 (635)
+||||||.+|.+|+.++++++++++||++......... .+.....+.+++..
T Consensus 540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----------------~~~~~~~~~~~~~~----------- 591 (1304)
T 2vsq_A 540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----------------LPYTGTTLFIDDQT----------- 591 (1304)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----------------CCCCSEEEESSCGG-----------
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----------------cCCCCcEEEecccc-----------
Confidence 99999999999999999999999999998765321100 01122233332211
Q ss_pred CCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceec
Q 006688 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442 (635)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~ 442 (635)
.... ....+.....|+++|||+|||||||+||||+++|+++.+. .+....++++++|+++++++++|+.
T Consensus 592 -------~~~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~--~~~~~~~~~~~~d~~l~~~~~~fd~ 660 (1304)
T 2vsq_A 592 -------RFEE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL--VKHVDYMAFSDQDTFLSVSNYAFDA 660 (1304)
T ss_dssp -------GGGS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH--HSSCCSSCCCTTCEEEECSCTTSTH
T ss_pred -------cccc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH--HHHHHhcCCCCCCEEEEECCccHHH
Confidence 0000 1111223457899999999999999999999999996643 2333457889999999999999999
Q ss_pred chhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCC
Q 006688 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522 (635)
Q Consensus 443 g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~ 522 (635)
+ ++++|.+|+.|+++++.+.... +++..+.+.|++++||+++++|++++.|.+... ..+++||.+++|||+++
T Consensus 661 ~-~~~~~~~l~~G~~l~~~~~~~~-~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~~~~lr~~~~gGe~l~ 733 (1304)
T 2vsq_A 661 F-TFDFYASMLNAARLIIADEHTL-LDTERLTDLILQENVNVMFATTALFNLLTDAGE-----DWMKGLRCILFGGERAS 733 (1304)
T ss_dssp H-HHHHHHHHTTTCEEEECCGGGT-TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-----HHHHTCSEEEEESSCCC
T ss_pred H-HHHHHHHHHcCCEEEECChhhc-CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-----hcCCCccEEEEecCCCC
Confidence 7 5899999999999999886544 399999999999999999999999999987532 23578999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccccccccccccccccCCCC--CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 523 ~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
++++++|.+.++ +.+++|.||+||++++++...... ......++|+|++|++++|+|++++++|.|++|||||+|
T Consensus 734 ~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G- 810 (1304)
T 2vsq_A 734 VPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISG- 810 (1304)
T ss_dssp HHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEE-
T ss_pred HHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEec-
Confidence 999999999987 478999999999998765542211 123457899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcC----CCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~----~~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|++.|.. +.++||||||+|||
T Consensus 811 -~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~ 848 (1304)
T 2vsq_A 811 -MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARW 848 (1304)
T ss_dssp -TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEE
T ss_pred -cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEE
Confidence 99999999999999999864 23459999999986
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-62 Score=545.90 Aligned_cols=407 Identities=24% Similarity=0.310 Sum_probs=329.3
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~i 271 (635)
+|......|+++++|+++ |+++|+++|+++.+++ +..+++||+||+++++++|+.|+++|+++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~-a~~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVY-ARDSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHH-HHHCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHH-HhhCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 344444567889999999 8999999999986543 45689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCc-cEEEEecCC
Q 006688 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 350 (635)
Q Consensus 272 va~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~ 350 (635)
+++|||+++|++++|++|.++.+++.++++++++++||++.... ....+......+ +.+ ..++.++..
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987642 112223322221 333 344544432
Q ss_pred ccccccccccCCCCcchhhhhcCcCCCCC--C--cccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCC
Q 006688 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKC--E--VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426 (635)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 426 (635)
.. .....+.+.+....... + .....++|+|||+|||||||.||||+++|.+++.+. ......+++
T Consensus 195 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~-~~~~~~~~~ 263 (580)
T 3etc_A 195 VL----------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI-LTAKYWQNV 263 (580)
T ss_dssp CC----------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHH-HHHHTTSCC
T ss_pred cc----------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHH-HHHHHhhCC
Confidence 10 01122333322221111 1 134678999999999999999999999999866554 334445788
Q ss_pred CCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccC
Q 006688 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (635)
Q Consensus 427 ~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~ 506 (635)
.+++++++.++++|+.++...++.++..|+++++.+.. .+++..+++.|++++||+++++|++++.|++... ...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL---SHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC------
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc---ccC
Confidence 99999999999999988655688899999999998632 2599999999999999999999999999988632 456
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCc
Q 006688 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586 (635)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~ 586 (635)
++++||.+++|||+++++++++|.+.++ ++++|.||+||+++.++.... ...+++++|+|+||++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999887 789999999999876554322 23577899999999999999999999
Q ss_pred cCCCcceEEEEecC---CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 587 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 587 vp~g~~GEL~i~g~---~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+|+.|||+|+|+ .+++++||+++|+.|.+.|. +|||||||+|++
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~ 462 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWM 462 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEE
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEE
Confidence 99999999999962 25799999999999999874 799999999985
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-62 Score=553.48 Aligned_cols=371 Identities=17% Similarity=0.196 Sum_probs=309.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+++++|+++ ++++|+++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 tl~~~~~~~-a~~~Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEM-AALHPHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HHhCCCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 488999999 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++||||||.+|.+++.++++++++++||+++...... .... .+.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~-~~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLP-CVPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSC-EEEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCc-eeeecc-----------
Confidence 99999999999999999999999999999765532110 0111 111110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
. .............++|+|||+|||||||.||||+++|+++.+.. .. ...+++.++|++++.+|++|
T Consensus 149 ----------~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~-~~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 ----------L-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLC-LG-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp ----------C-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHH-SS-CGGGTTCTTCEEEECSCTTS
T ss_pred ----------C-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHH-HH-HHhhCCCCCCEEEEECccCH
Confidence 0 00111112233568999999999999999999999999965543 32 34678999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.+ ++++|.+|+.|+++++.+.. . +++..+++.|+++++|+++++|++++.|++.. ...+++||.+++|||+
T Consensus 216 ~~~-~~~~~~~l~~G~~~v~~~~~-~-~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-----~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAA-TLEIWGALLNGGCCVLNDLG-P-LDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----PDCLGGLRQLLTGGDI 287 (620)
T ss_dssp THH-HHHHHHHHTTTCEEEECCSS-S-CCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----GGGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEeCccc-c-CCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----hhhCCCccEEEEEeCc
Confidence 998 47899999999999997432 2 59999999999999999999999999998753 3357899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccC--CCCCCCCCCCCCCCCCCCeEEEEcCCCCc-cCCCcceEEEE
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--PGAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 597 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~~~~~~~~~siG~pl~g~~v~IvD~~g~~-vp~g~~GEL~i 597 (635)
+++++++++.+.++ +++++|.||+||++++++... .........++|+|++|++++|+|+++++ +|+|++|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999999988876 589999999999997765431 11223456789999999999999999988 78999999999
Q ss_pred ecCCCcchhhhcCChhHHHHhhcCCC---C--ceEEcCCeEec
Q 006688 598 KSSWPGAFRTLYGDHERYETTYFKPF---P--GYYFTGDGCSR 635 (635)
Q Consensus 598 ~g~~~~v~~GY~~~~e~t~~~~~~~~---~--g~yrTGDlgr~ 635 (635)
+| +++++||+|+|+.|.+.|.... . +||||||+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 99 9999999999999999986421 1 69999999986
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-61 Score=536.23 Aligned_cols=392 Identities=21% Similarity=0.296 Sum_probs=323.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~-a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLEN-LSNHSSKPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTT-GGGSTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-hhcCCCceEEEECC----CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 378999998 89999999999753 2378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++|++.... +.+....... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999987642 1222222111 22 244443221
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCCCCCcEEEEeCC
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~~ 437 (635)
.....+.++........+.....++|+|||+|||||||.||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 01122333333222223344567899999999999999999999999997765543321 1356789999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEec
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (635)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999977778899999999999875 599999999999999999999999999998764 345678999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccccccccccccccccccc---CCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcce
Q 006688 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP---LPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (635)
Q Consensus 518 Ge~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~---~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~G 593 (635)
||++++++.++|.+.++ +++++|.||+||++.+++.. .......+++++|+|++|++++|+| ++++++|.|++|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999996 48999999999998664432 1222345678999999999999999 679999999999
Q ss_pred EEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~ 421 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYI 421 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEE
Confidence 999999 99999999999999988753 889999999985
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-61 Score=537.34 Aligned_cols=397 Identities=18% Similarity=0.241 Sum_probs=325.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCC--CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
++.++|+++ ++++|+++|+++.+.. .+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~-a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAA-AEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHH-HHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 368899998 8999999999987631 1234789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 279 ~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
++|++++||||.++.+++.++++++++++||++.... ..+...... ..+..++..+..
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987642 122222111 234555554421
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCC-CCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
...+.+.........+.....+ +|+|||+|||||||.||||+++|++++.+.. .....++++++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANAL-QLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHH-HHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHH-HHHHHcCCCCCCEEEEeCc
Confidence 1223333322222222223334 8999999999999999999999999776654 4455789999999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEec
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (635)
++|+.++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++.........++++||.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999998654 7889999999999874 59999999999999999999999999998865422223578999999999
Q ss_pred CCCCCHHHHHHHHHH----hCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcc
Q 006688 518 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (635)
Q Consensus 518 Ge~l~~~l~~~~~~~----~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~ 592 (635)
||++++++.+++.+. ++.++++++|.||+||++.+++...... ..+..++|+|++|++++|+| ++++++|.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999887 5544588999999999998766543321 24678899999999999999 89999999999
Q ss_pred eEEEEecCCCcchhhhcCChhHHHHhhcCCCCc--eEEcCCeEec
Q 006688 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSR 635 (635)
Q Consensus 593 GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g--~yrTGDlgr~ 635 (635)
|||+|+| |++++|||++|+.|.+.|+.+.+| ||||||+|++
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~ 426 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEE
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEE
Confidence 9999999 999999999999999998644466 9999999985
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=531.61 Aligned_cols=402 Identities=21% Similarity=0.279 Sum_probs=329.2
Q ss_pred ccCCCCcchHHHHHHhhhhhcc-----CCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcC
Q 006688 192 EWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLP 265 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~-----~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ 265 (635)
.|+.....+++.++|+++ +++ +|+++|+++.+.+ +..+++||+||+++++++|+.|++. |+++||+|+|+++
T Consensus 30 ~~~~~~~~~~~~~~l~~~-a~~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~ 107 (570)
T 3c5e_A 30 HQEVPAKFNFASDVLDHW-ADMEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107 (570)
T ss_dssp BCCCCSBCCHHHHTHHHH-HHHHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECC
T ss_pred cccCCccccHHHHHHHHH-HhhccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 566666678889999998 787 9999999986422 2357899999999999999999998 9999999999999
Q ss_pred CCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEE
Q 006688 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (635)
Q Consensus 266 ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 345 (635)
|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... ..+. ......+.++.++
T Consensus 108 n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~~~~~~~~~~~ 174 (570)
T 3c5e_A 108 RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVD----TVASECPSLRIKL 174 (570)
T ss_dssp SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHH----HHGGGCTTCCEEE
T ss_pred CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHH----HHhhcCCceeEEE
Confidence 99999999999999999999999999999999999999999999987642 1111 1122234555666
Q ss_pred EecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHH-HHHHHHHhc
Q 006688 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAF 424 (635)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~ 424 (635)
.++.... .....+.+++.......+.....++|+|||+|||||||.||||+++|+ ++.+ ..... ..+
T Consensus 175 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 175 LVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp EESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred EecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 5543110 001123333322222222234568999999999999999999999999 4542 22333 567
Q ss_pred CCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccc
Q 006688 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504 (635)
Q Consensus 425 ~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~ 504 (635)
+++++|++++.+|++|+.++...++.+|..|+++++.+.. . +++..+++.|+++++|+++++|++++.|++.. ..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~ 317 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP-K-FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LS 317 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS-S-CCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC-C-CCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---cc
Confidence 8899999999999999998766789999999999998742 2 59999999999999999999999999998763 23
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCC
Q 006688 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (635)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g 584 (635)
..++++||.+++|||+++++++++|.+.++ ++++|.||+||++..++.... ...+++++|+|++|++++|+|+++
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~g 392 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDDKG 392 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECTTS
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECCCC
Confidence 456889999999999999999999999887 789999999999866544322 235678999999999999999999
Q ss_pred CccCCCcceEEEEe-----cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 585 VEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~GEL~i~-----g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++|.|+.|||+|+ | +++++|||++|+.|.+.|. +|||+|||+|++
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~ 443 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIK 443 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEE
T ss_pred CCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEE
Confidence 99999999999999 8 8999999999999999874 789999999985
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-61 Score=535.39 Aligned_cols=389 Identities=19% Similarity=0.227 Sum_probs=317.6
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 27 l~~~l~~~-a~~~p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 99 (539)
T 1mdb_A 27 FGDLLRDR-AAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLG 99 (539)
T ss_dssp HHHHHHHH-HHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHCCCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC
Confidence 78999998 89999999999643 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++|+++.... ........... ...+.++.++..+...
T Consensus 100 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------- 161 (539)
T 1mdb_A 100 ALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQ----SKLPTLKNIIVAGEAE---------- 161 (539)
T ss_dssp CEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHH----HHCTTCCCEEEESCCT----------
T ss_pred eEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHH----hcCCCccEEEEcCCcc----------
Confidence 99999999999999999999999999999875421 01111222221 1224455555443211
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
.+.++..............++|+|||+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|+
T Consensus 162 -----~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~h~ 235 (539)
T 1mdb_A 162 -----EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLK-RSVEVCWLDHSTVYLAALPMAHN 235 (539)
T ss_dssp -----TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHH-HHHHHHTCCTTCEEEECSCTTSH
T ss_pred -----chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHH-HHHHhhCCCCCCEEEEeeccccc
Confidence 011111111111122345789999999999999999999999999776554 44456889999999999999999
Q ss_pred cchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 442 TGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 442 ~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+++.. .++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||+
T Consensus 236 ~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 236 YPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp HHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESSC
T ss_pred chhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCCC
Confidence 98654 68999999999999865 599999999999999999999999999987643 234578999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCC-eEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~-~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++.++|.+.++ ++++|.||+||+++.++.. ........+++|+|+++. +++|+|++++++|.|++|||+|+|
T Consensus 310 l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g 385 (539)
T 1mdb_A 310 FSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTRL-DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRG 385 (539)
T ss_dssp CCHHHHTTHHHHTC---SEEEEEEECTTSCEEECCT-TSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHhC---CcEEEEEcCCCCcccccCC-CCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeC
Confidence 99999999999887 7899999999976443321 111112446899999765 799999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 386 --~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~ 417 (539)
T 1mdb_A 386 --PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRL 417 (539)
T ss_dssp --TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred --cccchhhcCChhhhhhhccC--CCCeecCceEEE
Confidence 99999999999999999864 799999999985
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-60 Score=525.69 Aligned_cols=382 Identities=21% Similarity=0.291 Sum_probs=312.7
Q ss_pred HHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCe
Q 006688 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (635)
Q Consensus 204 ~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~ 283 (635)
++|+++ ++++|+++|+.... ..++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~-a~~~p~~~a~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARL-FDKLDDPHKLAIET---AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHH-HSCCSCTTSEEEEE---TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHH-HHhCCCCceEEEec---CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 467777 78899999988643 22478999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCC
Q 006688 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (635)
Q Consensus 284 ~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (635)
++|++|.++.+++.++++++++++||++...... + ....... . ..++.++...
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~----~~~~~~~-----~-~~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG-----I----AAIAAKV-----G-ATVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT-----T----HHHHHHH-----T-CEEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH-----H----HHHHhhc-----C-ceEEEecCCc------------
Confidence 9999999999999999999999999998765321 1 1111111 1 1233332211
Q ss_pred CcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecc
Q 006688 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
...+.+...............++|+|||+|||||||.||||+++|++++.+. ......++++++|++++.+|++|+.+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS-LTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHH-HHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 0111111111122223335678999999999999999999999999977655 44455789999999999999999998
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCH
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (635)
+...++.+++.|+++++.+. ++++.+++.++ ++|+++++|+++..|++... .....+++||.+++|||++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 76677889999999999874 59999999998 89999999999999998754 245567899999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCC
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 602 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~ 602 (635)
++.+.|.+.++ .+++|.||+||++..++... .....++++|+|++|++++|+| ++++++|.|++|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999987 78999999999987654332 2245678899999999999999 889999999999999999 9
Q ss_pred cchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 603 ~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~ 386 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKI 386 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEE
Confidence 9999999999999999854 789999999985
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=528.88 Aligned_cols=385 Identities=19% Similarity=0.228 Sum_probs=313.8
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.++.++|+++ ++++|+++|+++.+. .+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 16 ~~l~~~l~~~-a~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 16 KNIGWMLRQR-ATVSPRLQAYVEPST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp GCHHHHHHHH-HHHSTTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHH-HHhCCCCeEEEeCCc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 4588999998 899999999998642 36899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++||+|.++.+++.+++++++++++|++.... ..+...... ......++.+..
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~---------- 147 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQ----ADPPGTVTDWIG---------- 147 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHS----SSCCTTCCEEEE----------
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhc----cCCccEEEEccC----------
Confidence 999999999999999999999999999999986542 222221111 111111111110
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
...+.+.........+.....++|++||+|||||||.||||+++|++++.+.. .....++++++|++++.+|++
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 148 -----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAAS-SWASTIDVRYRDRLLLPLPMF 221 (517)
T ss_dssp -----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHH-HHHHHSCCCTTCEEEECSCTT
T ss_pred -----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHH-HHHHhcCCCCCCEEEEeCchH
Confidence 01122222222223334456789999999999999999999999999766554 444578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++. .++.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ....++++||.+++|||
T Consensus 222 ~~~~~~-~~~~~~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 222 HVAALT-TVIFSAMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGA 294 (517)
T ss_dssp SHHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSS
T ss_pred HHHHHH-HHHHHHhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCC
Confidence 999864 44445559999999865 599999999999999999999999999988643 24567899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++.+.|.+. + ++++|.||+||+++.++.........+.+++|+|+++++++|+|+++++++.| .|||+|+|
T Consensus 295 ~l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g 369 (517)
T 3r44_A 295 PMPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS 369 (517)
T ss_dssp CCCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE
T ss_pred CCCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC
Confidence 9999999999876 4 88999999999987665543333345678999999999999999999999999 89999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++|||++|+.|.+.|. +|||||||+|++
T Consensus 370 --~~v~~GY~~~p~~t~~~f~---~g~~~TGDl~~~ 400 (517)
T 3r44_A 370 --DILLKEYWNRPEATRDAFD---NGWFRTGDIGEI 400 (517)
T ss_dssp --TTSCSEETTCHHHHHHTEE---TTEEEEEEEEEE
T ss_pred --cchhhhhCCChhhhHhhhc---CCCEecceeEEE
Confidence 9999999999999999883 799999999985
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=566.64 Aligned_cols=450 Identities=17% Similarity=0.221 Sum_probs=326.6
Q ss_pred ccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHH
Q 006688 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNC 205 (635)
Q Consensus 126 ~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 205 (635)
-.|++++.++.++.+|..++..+++.+...++....+. .|..... .. .++. ..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------~~-----~~p~--~~tl~~~ 66 (979)
T 3tsy_A 9 HHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDV----IFRSKLP-----------DI-----YIPN--HLSLHDY 66 (979)
T ss_dssp ------------------------------------CC----CBCCSSC-----------CC-----CCCT--TSCHHHH
T ss_pred ccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCCCc----eeecCCC-----------CC-----CCCC--CCCHHHH
Confidence 47999999999999999999999998887777543322 2211110 00 0111 1247899
Q ss_pred HhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEE
Q 006688 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (635)
Q Consensus 206 l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~v 285 (635)
|+++ ++++|+++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 67 l~~~-a~~~pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~v 141 (979)
T 3tsy_A 67 IFQN-ISEFATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATAT 141 (979)
T ss_dssp HTTT-GGGTTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEE
T ss_pred HHHH-HHhCCCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEE
Confidence 9998 89999999999753 237899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCc
Q 006688 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (635)
Q Consensus 286 pld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (635)
|++|.++.+++.++++++++++||++....... ...... .. ..++.++... .... ....
T Consensus 142 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~~~~-----~~-~~~~~~~~~~-----~~~~-~~~~ 200 (979)
T 3tsy_A 142 AANPFFTPAEIAKQAKASNTKLIITEARYVDKI---------KPLQND-----DG-VVIVCIDDNE-----SVPI-PEGC 200 (979)
T ss_dssp EECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS---------HHHHHT-----SC-CEEEECCCCT-----TSCC-CTTE
T ss_pred eeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH---------HHHhhc-----CC-ceEEEeCCcc-----cccC-Cccc
Confidence 999999999999999999999999987754321 111111 11 2244444321 0000 0112
Q ss_pred chhhhhcCcCCC---CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCCCCCcEEEEeCCcc
Q 006688 366 IWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 366 ~~~~~~~~~~~~---~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~~l~ 439 (635)
..+.++...... ..+.....++|++||+|||||||.||||+++|++++........ ..+++.++|++++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 280 (979)
T 3tsy_A 201 LRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMF 280 (979)
T ss_dssp EEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSS
T ss_pred ccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchH
Confidence 223333322211 22333567899999999999999999999999997765543321 135678899999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|++++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||
T Consensus 281 h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 281 HIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp SHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEEEESSC
T ss_pred HHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEEEEcCC
Confidence 999976778889999999999875 599999999999999999999999999998754 24567899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccccccccccccccccccc---CCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP---LPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYL 595 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~---~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL 595 (635)
++++++.++|.+.++ +++++|.||+||++.+++.. .......+.+++|+|++|++++|+| ++++++|.|++|||
T Consensus 355 ~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl 432 (979)
T 3tsy_A 355 PLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432 (979)
T ss_dssp CCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEE
T ss_pred CCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEE
Confidence 999999999999996 48999999999998765432 1222345678999999999999999 57999999999999
Q ss_pred EEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 596 ~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 433 ~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~ 468 (979)
T 3tsy_A 433 CIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLI 468 (979)
T ss_dssp EEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred EEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEE
Confidence 9999 99999999999999998753 889999999985
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-60 Score=538.05 Aligned_cols=391 Identities=19% Similarity=0.251 Sum_probs=317.8
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
++++|+++ ++ ||++|+++.+ +++||+||+++++++|+.|++.|+++||+|+|+++|++++++++|||+|+|
T Consensus 29 l~~~~~~~-a~--pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 29 LTDILTRH-AA--SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TTHHHHTT-TT--CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-hC--CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 68999998 55 9999999654 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
+++||++|.++.+++.++++++++++++++....... ......... .....+..+...+...
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~---------- 161 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFS----GDDFLNTFV----TEHSSIRVVQLLNDSG---------- 161 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGS----SSHHHHHHH----HHSTTCCEEEEETCCS----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccc----cHHHHHHHh----hcCCccceeeeccccc----------
Confidence 9999999999999999999999999999987643110 011111111 1224455555444321
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
...+.+...............++++|||+|||||||.||||+++|++++.+. ......+++.++|++++.+|++|.
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~~~~l~~~p~~~~ 237 (617)
T 3rg2_A 162 ---EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV-RRSVEICQFTQQTRYLCAIPAAHN 237 (617)
T ss_dssp ---TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHH-HHHHHHHTCCTTCEEEECSCTTSH
T ss_pred ---ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHH-HHHHHhcCCCCcceEEEeccchhh
Confidence 1112222222222223344578999999999999999999999999977655 444557899999999999999988
Q ss_pred cchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 442 TGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 442 ~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+++.. ++|.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++.........++++||.+++|||+
T Consensus 238 ~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 238 YAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp HHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred hhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 77543 68999999999999875 48999999999999999999999999998754322233468999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++.++|.+.++ ++++|.||+||+++.++.... .......++|+|+ ++++++|+|++++++|.|++|||+|+|
T Consensus 314 l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G 389 (617)
T 3rg2_A 314 LSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRG 389 (617)
T ss_dssp CCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHhC---CcEEEEeccCcceeecccCCC-cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecC
Confidence 99999999999887 889999999999865543221 1112345799998 788999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|.+.|.. +|||||||+||+
T Consensus 390 --~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~ 421 (617)
T 3rg2_A 390 --PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISI 421 (617)
T ss_dssp --SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred --ccccchhcCChhhhhhccCC--CCceecCceEEE
Confidence 99999999999999999864 789999999985
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-60 Score=533.07 Aligned_cols=373 Identities=21% Similarity=0.255 Sum_probs=311.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+++++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~-a~~~pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQ-AARAPDAVALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HHHCCCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 488999999 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.++++++++++||++....... .....++..+..
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~---------- 198 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLYVEDEA---------- 198 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEECCC------------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCcceeeeccc----------
Confidence 99999999999999999999999999999987643211 111222211110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
..............++|+|||+|||||||.||||+++|++++.... . ...++++++|++++.+|++|
T Consensus 199 -----------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~-~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -----------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL-G-QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS-S-CCSSCCSTTCEEEECSCTTS
T ss_pred -----------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH-h-hhhcCCCCCCEEEEecCccH
Confidence 0000111222345789999999999999999999999999654432 2 23567889999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.+ .+.++.+|+.|+++++.+.. . +++..+++.|+++++|++.++|+++..|++... ..+++||.+++|||+
T Consensus 266 ~~~-~~~~~~~l~~G~~~v~~~~~-~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAF-GLELFGALLFGARCVLQSGQ-N-PDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-----EAFEGVRYAITGGEP 337 (570)
T ss_dssp STH-HHHHHHHHTTTCEEEECSSS-S-CCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEEcCCc-c-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-----hhCCCceEEEEeccc
Confidence 876 56889999999999998753 2 599999999999999999999999999987643 347899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccC--CCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
+++++++++.+.++ +++++|.||+||+++.++... .........++|+|++|++++|+|++++++|.|++|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999999886 589999999999987665432 12223455679999999999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCC------CCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~------~~g~yrTGDlgr~ 635 (635)
| +++++|||++|+.|.+.|..+ .+|||||||+|++
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~ 456 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR 456 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence 9 999999999999999988632 3479999999985
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-61 Score=528.24 Aligned_cols=396 Identities=18% Similarity=0.194 Sum_probs=307.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCC---CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
++.++|+++ ++++|+++|+++.+.. .+..+++||+||+++++++|+.|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~-a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRAC-ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHH-HHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHH-HHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 378999998 8999999999987521 1334899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCeEEecCC---CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc
Q 006688 278 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (635)
Q Consensus 278 l~~Ga~~vpld~---~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (635)
+++|+++|||++ .++.+++.++++++++++||++..... .+....... .......++.++...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVD---------DVVQHVARR--PGESPPSIIEVDLLD--- 168 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHH---------HHHHTCC--------CCEEEEGGGSC---
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHH---------HHHHHHhcc--ccccccceeEecccc---
Confidence 999999999999 888999999999999999999876421 111110000 000111233322111
Q ss_pred ccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCC------
Q 006688 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 428 (635)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~------ 428 (635)
.............++++|||+|||||||.||||+++|++++.+.... ...+.+.+
T Consensus 169 ------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 169 ------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL-MSGYFADTDGIPPP 229 (480)
T ss_dssp ------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHH-HHHHCTTTTTCCCT
T ss_pred ------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHH-HHHhccccccCCCC
Confidence 01111222334578999999999999999999999999977665443 44677777
Q ss_pred CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcC--ccccccC
Q 006688 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG--NEYVTRY 506 (635)
Q Consensus 429 ~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~--~~~~~~~ 506 (635)
+|++++.+|++|+.++++.++.+|+.|+++++.+.....+++..+++.|+++++| +..+|+++..++... .......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 9999999999999998788999999999999986421112889999999999999 888899888887632 1123456
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCCCC----------------------
Q 006688 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 561 (635)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~~~---------------------- 561 (635)
++++||.+++|||+++++++++|.+.++. ++.+++|.||+||+++.++.......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 78999999999999999999999999842 24689999999999987665432211
Q ss_pred -CCCCCCCCCCCCCCeEEEEcCC-CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhc-------C--CCCceEEcC
Q 006688 562 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF-------K--PFPGYYFTG 630 (635)
Q Consensus 562 -~~~~~siG~pl~g~~v~IvD~~-g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~-------~--~~~g~yrTG 630 (635)
..+..++|+|++ ++++|+|++ ++++|.|++|||+|+| |++++|||++|+.|.+.|. . +.+||||||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 124468999999 999999975 8999999999999999 9999999999999999984 1 146799999
Q ss_pred CeEec
Q 006688 631 DGCSR 635 (635)
Q Consensus 631 Dlgr~ 635 (635)
|+||+
T Consensus 466 Dlg~~ 470 (480)
T 3t5a_A 466 DSGFV 470 (480)
T ss_dssp EEEEE
T ss_pred ceeeE
Confidence 99985
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-60 Score=523.61 Aligned_cols=394 Identities=22% Similarity=0.305 Sum_probs=310.6
Q ss_pred cchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 198 ~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
..|++.++|+++ ++ +|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||
T Consensus 22 ~~~~~~~~l~~~-~~-~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~ 93 (529)
T 2v7b_A 22 LFNFAAYLFRLN-ET-RAGKTAYIDDT------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGA 93 (529)
T ss_dssp CCCHHHHHHHHT-GG-GTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHH
T ss_pred ceeHHHHHHHhh-hc-cCCceEEEeCC------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 346788999998 78 99999999643 78999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCc-cEEEEecCCcccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTRE 356 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~ 356 (635)
+++|++++|+++.++.+++.+++++++++++|++.... ..+..... ....+ ..++.++....
T Consensus 94 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~~---- 156 (529)
T 2v7b_A 94 LYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALE----SAEHDGCQLIVSQPRES---- 156 (529)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHH----CC---CCEEEEECC-------
T ss_pred HHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHh----hccccCceEEEeccccc----
Confidence 99999999999999999999999999999999987542 11221111 11222 33444332210
Q ss_pred ccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
. ......+.+.........+.....++|++||+|||||||.||||+++|+++..+........+++.++|++++.+
T Consensus 157 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~ 232 (529)
T 2v7b_A 157 -E---PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAA 232 (529)
T ss_dssp -------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESS
T ss_pred -c---cccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEee
Confidence 0 000112333332222222233457899999999999999999999999996333333333457788999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|+.++...++.+|..|+++++.+.. +++..+++.|+++++|+++++|+++..|++.... ......+||.+++
T Consensus 233 p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~ 307 (529)
T 2v7b_A 233 KLFFAYGLGNGLTFPLSVGATAILMAER---PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRICTS 307 (529)
T ss_dssp CTTSHHHHHHHTHHHHHHTCEEECCCSC---CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEEEE
Confidence 9999999766778899999999987532 5999999999999999999999999999876431 1111248999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
|||++++++.++|.+.++ ++++|.||+||++..++..... ..+.+++|+|++|++++|+|++|+++|.|++|||+
T Consensus 308 gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~ 382 (529)
T 2v7b_A 308 AGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLY 382 (529)
T ss_dssp CSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEE
T ss_pred cCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEECCCCCCCCCCCccEEE
Confidence 999999999999999987 7899999999997655443222 24668899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+| ++++.|||++|+.|.+.|. +|||+|||+|++
T Consensus 383 v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~ 416 (529)
T 2v7b_A 383 IKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCR 416 (529)
T ss_dssp EEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEE
T ss_pred Eec--CCcccccCCChHHHHHhhh---cCCcccCceEEE
Confidence 999 9999999999999999874 789999999985
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=529.67 Aligned_cols=392 Identities=21% Similarity=0.236 Sum_probs=317.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 32 l~~~l~~~-a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 104 (544)
T 3o83_A 32 LTRILTVG-VQSHPHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG 104 (544)
T ss_dssp TTHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHhCCCceEEEcCC------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 67899998 89999999999654 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++|++...... ........ +.........++.++....
T Consensus 105 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------- 167 (544)
T 3o83_A 105 VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVF----SNNQFIDS----LHDVNLSPEIILMLNHQAT--------- 167 (544)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHH----HHHTTCCCSEEEEETCCTT---------
T ss_pred cEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccc----cHHHHHHH----HhhcccCcceEEEecCCcc---------
Confidence 999999999999999999999999999998764210 01111111 1222344555555543210
Q ss_pred CCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
...+.+...... .........++|+|||+|||||||.||||+++|++++.+. ......++++++|++++.+|++|
T Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~h 243 (544)
T 3o83_A 168 ---DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV-RASAEICGLNSNTRLLCALPAPH 243 (544)
T ss_dssp ---SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTS
T ss_pred ---ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHH-HHHHHHhCCCCCCeEEEecCcce
Confidence 011111111111 1112234568999999999999999999999999977655 44555789999999999999999
Q ss_pred ecchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 441 ~~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
.+++.. .++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||
T Consensus 244 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 244 NFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGGA 317 (544)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEESS
T ss_pred EeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcCC
Confidence 887654 68899999999999875 4999999999999999999999999999886432 2345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++++++.+++.+.++ ++++|.||+||+++.++.... .......++|+|+ ++++++|+|++++++|.|++|||+|+
T Consensus 318 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 393 (544)
T 3o83_A 318 SFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRLDD-SDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATR 393 (544)
T ss_dssp CCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCTTS-CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEeeeccccccceeecCCC-chhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEe
Confidence 999999999999987 889999999998755433211 1123346899997 89999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| |++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 394 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~ 426 (544)
T 3o83_A 394 G--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQR 426 (544)
T ss_dssp C--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEE
T ss_pred c--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEE
Confidence 9 99999999999999998854 889999999985
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-60 Score=527.96 Aligned_cols=396 Identities=16% Similarity=0.173 Sum_probs=315.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ ++++|+++|++..... ...+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~-a~~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKA-MKRYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHH-HHHHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHH-HHhCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 478899888 8999999997621110 23478999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++|+++... ..+... ....+.+..++.++.....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNV----QKKLPIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHH----HHHCTTCCEEEETTCSSCB-------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHH----HhhCCCcceEEEEcCCccc-------
Confidence 99999999999999999999999999999987642 122222 2223556677766543200
Q ss_pred CCCCcchhhhhcCcCC-------CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh--cCCCCCcE
Q 006688 361 QDGRDIWWQDVVPKYP-------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDV 431 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~ 431 (635)
.....+.++..... ...+.....++|+|||+|||||||.||||+++|++++.+........ +++.++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 00111222211100 11111223467899999999999999999999999766543332211 46788999
Q ss_pred EEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCc
Q 006688 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (635)
Q Consensus 432 ~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (635)
+++.+|++|+.++ +.++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++|
T Consensus 237 ~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~l 309 (550)
T 3rix_A 237 ILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNL 309 (550)
T ss_dssp EEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTC
T ss_pred EEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccc
Confidence 9999999999995 678889999999999864 599999999999999999999999999998754 345678999
Q ss_pred eEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCC
Q 006688 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 590 (635)
Q Consensus 512 r~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g 590 (635)
|.+++|||++++++.++|.+.++. ..++|.||+||+++.++..... ..+++++|+|+++++++|+| ++++++|.|
T Consensus 310 r~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 310 HEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred cEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence 999999999999999999999982 3589999999999776654332 35678999999999999999 679999999
Q ss_pred cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 591 ~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.|||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 386 ~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~ 426 (550)
T 3rix_A 386 QRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYW 426 (550)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred CCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEE
Confidence 999999999 99999999999999887743 899999999985
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-60 Score=524.28 Aligned_cols=391 Identities=20% Similarity=0.223 Sum_probs=316.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++... +..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 20 l~~~l~~~-a~~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 20 LWDFLERA-AALFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp THHHHHHH-HHHSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHhCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 67899988 899999999996431 345889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.++++++++++||+++... ..+. ......+.++.++.++...+
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~--------- 154 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVE----AIRGELKTVQHFVVMDEKAP--------- 154 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHH----HHGGGCSSCCEEEESSSCCC---------
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHH----HHHhhCCCccEEEEecCCCC---------
Confidence 9999999999999999999999999999986531 1111 11222345556665543210
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH-HHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.....+.+.+...... ....++++++|+|||||||.||||+++|++++.+.... ....++++++|++++.+|++|
T Consensus 155 -~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 155 -EGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230 (541)
T ss_dssp -TTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTS
T ss_pred -cccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchh
Confidence 0112344443322211 33567899999999999999999999999976554331 123467889999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++ ..++.+++.|+++++.+.. +++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||+
T Consensus 231 ~~~~-~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~ 304 (541)
T 1v25_A 231 VNAW-CLPYAATLVGAKQVLPGPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGSA 304 (541)
T ss_dssp HHHH-THHHHHHHHTCEEEECTTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSSC
T ss_pred hhHH-HHHHHHHhcCceEEeeCCC---CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCCC
Confidence 9885 4678899999999997632 499999999999999999999999999987643 134567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC----C-----CCCCCCCCCCCCCCeEEEEcCCCCccCC--
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----W-----PQKPGSATFPFFGVQPVIVDEKGVEIEG-- 589 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----~-----~~~~~siG~pl~g~~v~IvD~~g~~vp~-- 589 (635)
++++++++| +.++ ++++|.||+||++.+++...... . ....+++|+|++|++++|+|++++++|.
T Consensus 305 l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~ 380 (541)
T 1v25_A 305 APRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDG 380 (541)
T ss_dssp CCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSS
T ss_pred CCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCC
Confidence 999999999 6676 78999999999987665432210 0 0234789999999999999999999994
Q ss_pred CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 590 g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++.|||+|+| |++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 381 ~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~ 422 (541)
T 1v25_A 381 KALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVW 422 (541)
T ss_dssp CCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEE
T ss_pred CcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEE
Confidence 3689999999 99999999999999998753 799999999985
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-59 Score=515.46 Aligned_cols=379 Identities=20% Similarity=0.208 Sum_probs=305.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.. ..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~-a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRA-ATRAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHhCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 367899998 89999999999752 2378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEE--eCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
|++++|+||.++.+++.+++++++++++|+ +.... ..+ ... ...++ ++.+++...
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~---~~~----~~~~~-~~~~~~~~~------ 134 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAI---FQS----GSGAR-IIFLGDLVR------ 134 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHH---HHH----CCCCE-EEEGGGTEE------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hhh---hhc----cccce-eEEecchhh------
Confidence 999999999999999999999999999998 54321 111 011 01222 222221100
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCC--CCCcEEEEeC
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTA 436 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~~d~~l~~~ 436 (635)
. .+... .....+.....++|+|||+|||||||.||||+++|+++..+.. .....+++ .++|++++.+
T Consensus 135 ---~------~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 203 (504)
T 1t5h_X 135 ---D------GEPYS-YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHGRHNVVLGLM 203 (504)
T ss_dssp ---T------TEECC-CSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHH-HHHHTTCCCSSTTCEEEECS
T ss_pred ---c------Ccccc-cCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHH-HHHHhhCCCCCCCceEEeec
Confidence 0 00000 0111111345689999999999999999999999999766554 34446788 8899999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|+.++...++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++
T Consensus 204 p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 204 PLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp CTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred chhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 999999976778999999999999875 5999999999999999999999999999876421123456899999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCC---CccCCCcce
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIEGECSG 593 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g---~~vp~g~~G 593 (635)
|||++++++.++|.+.++ .+++|.||+||+++. .... ..+.+++|+|+++++++|+|+++ +++|.|+.|
T Consensus 280 gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~-~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~G 351 (504)
T 1t5h_X 280 AGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNS-LYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEG 351 (504)
T ss_dssp CCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEEE-EEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCE
T ss_pred cCCcCCHHHHHHHHHhcC---cceeeeecccccccc-cccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcc
Confidence 999999999999999987 789999999998432 2211 24567899999999999999887 999999999
Q ss_pred EEEEe-cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~-g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+ | +++++||+++|+.|.+.| .+|||||||+|++
T Consensus 352 El~v~gg--~~~~~GY~~~~~~t~~~f---~~g~~~TGDlg~~ 389 (504)
T 1t5h_X 352 ELIVAAS--DSAFVGYLNQPQATAEKL---QDGWYRTSDVAVW 389 (504)
T ss_dssp EEEEECC--TTSCCCBTTCHHHHHHHE---ETTEEEEEEEEEE
T ss_pred eEEEeCC--ceeeceecCCchhhhhhh---cCCccccCcEEEE
Confidence 99999 8 899999999999999987 3799999999985
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=520.97 Aligned_cols=391 Identities=17% Similarity=0.165 Sum_probs=315.3
Q ss_pred HHHH-HHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~-~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.+.+ +|.++ ++++ +++|+++.. ..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~-~~~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMER-YAKL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHH-HHHH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhh-hccc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 4667 77777 7888 999999732 237899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++|++|.++.+++.++++++++++||+++... ..+...... .+....++.++.... .
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~-----~- 160 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKT----VTTIKTIVILDSKVD-----Y- 160 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHH----STTCCEEEETTCSSC-----B-
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcC----CCCCCEEEEeCCccc-----c-
Confidence 999999999999999999999999999999987642 122222111 122445555543210 0
Q ss_pred cCCCCcchhhhhcCcCCCC-CCcccCC-----C-CCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh---cCCCCC
Q 006688 360 WQDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPS 429 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~ 429 (635)
.....+.++....... .+..... + +|++||+|||||||.||||+++|++++.+... .... ++++++
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~~~~ 236 (548)
T 2d1s_A 161 ---RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH-ARDPIYGNQVSPG 236 (548)
T ss_dssp ---TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHH-HTCTTTSCCCCTT
T ss_pred ---cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHH-hhchhhccCCCcc
Confidence 0011233333221111 1111222 4 89999999999999999999999997665433 3333 678899
Q ss_pred cEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCC
Q 006688 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (635)
Q Consensus 430 d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (635)
|++++.+|++|+.++...++.+| .|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....+++
T Consensus 237 d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~ 309 (548)
T 2d1s_A 237 TAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLS 309 (548)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCT
T ss_pred ceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccc
Confidence 99999999999998655566777 9999999864 599999999999999999999999999998754 2355789
Q ss_pred CceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccC
Q 006688 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIE 588 (635)
Q Consensus 510 sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp 588 (635)
+||.+++|||++++++.++|.+.++ +.+++|.||+||++..++.... ...+.+++|+|+|+++++|+| ++++++|
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLG 385 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCT--TCCCTTCCBEECTTCEEEEECTTTCCBCC
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCc--ccCCCCCCCccCCCceEEEEeCCcCccCC
Confidence 9999999999999999999999996 4789999999999876654322 235678999999999999999 7999999
Q ss_pred CCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 589 ~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+.|||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 386 ~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~ 428 (548)
T 2d1s_A 386 PNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYY 428 (548)
T ss_dssp TTCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred CCCCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEE
Confidence 99999999999 99999999999999988743 789999999985
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=524.55 Aligned_cols=373 Identities=20% Similarity=0.205 Sum_probs=301.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~-a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQ-VSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-HHHCCCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 378999998 89999999999643 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++||+|.++.+++.++++++++++||++..... . ... ......+..++...
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~---------~----~~~----~~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------L----IHN----IQFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------H----HTT----SCCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh---------h----hhh----ccccCceeeecchh---------
Confidence 999999999999999999999999999999865311 0 000 01111222222110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
+ .............++|+|||+|||||||.||||+++|++++... ......++++++|++++.+|++|
T Consensus 167 -------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLK-VFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHH-HHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHH-HHHHHhcCCCCCCEEEEeCCccH
Confidence 0 00011111223467899999999999999999999999976544 45555789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++ +.++.+|+.|+++++.+.... +++..+++.|+++++|++.++|+++..|.. ..+++||.+++||++
T Consensus 235 ~~~~-~~~~~~l~~G~~~v~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~--------~~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DASV-WEMFMALLTGASLYIILKDTI-NDFVKFEQYINQKEITVITLPPTYVVHLDP--------ERILSIQTLITAGSA 304 (563)
T ss_dssp THHH-HHHHHHHTTTCEEEECCHHHH-TCHHHHHHHHHHTTCCEEEECHHHHTTSCT--------TTCCSCSEEEEESSC
T ss_pred HHHH-HHHHHHHHCCCEEEEcChHhh-cCHHHHHHHHHHcCCcEEEeCHHHHHHHHh--------cccccccEEEEEEec
Confidence 9985 678899999999999864322 389999999999999999999999887743 246799999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccC-CCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++++|.+. ++++|.||+||++..++... ......+..++|+|++|++++|+|++++++|.|++|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999988763 67999999999987655432 222223567899999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcC----CCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~----~~~g~yrTGDlgr~ 635 (635)
+++++|||++|+.|.+.|.. +.+|||+|||+|++
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~ 417 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW 417 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEE
Confidence 99999999999999998853 23569999999985
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=520.89 Aligned_cols=379 Identities=18% Similarity=0.229 Sum_probs=310.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~-a~~~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKW-AAETPDQTAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHCCCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 56888888 89999999999754 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++|++........ . ..++..+.
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~~~------------ 122 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------P-VRIVSEDN------------ 122 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------S-SEEEETHH------------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------c-cceechhh------------
Confidence 99999999999999999999999999999755321100 0 00111000
Q ss_pred CCCcchhhhhc--CcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 362 DGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 362 ~~~~~~~~~~~--~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
+.+.. .......+.....++|+++|+|||||||.||||+++|++++... ......++++++|++++.+|++
T Consensus 123 ------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 195 (512)
T 3fce_A 123 ------LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFT-KWAVEDFNLQTGQVFLNQAPFS 195 (512)
T ss_dssp ------HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHH-HHHHHHTTCCSSCEEEECSCTT
T ss_pred ------hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHH-HHHHHhcCCCCCCEEEEeCCcc
Confidence 00000 01111223344678999999999999999999999999977655 4455578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ +.++.+|+.|+++++.+.... +++..+++.|+++++|++.++|+++..++.... ....++++||.+++|||
T Consensus 196 ~~~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 196 FDLSV-MDIYPSLVTGGTLWAIDKDMI-ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGE 271 (512)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCHHHH-HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSS
T ss_pred HhHHH-HHHHHHHhCCCEEEECCHHHh-hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecC
Confidence 99985 678999999999999864222 388999999999999999999999999987654 24567899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC---CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++.++|.+.++ +++++|.||+||+++.++...... ...+..++|+|+++++++|+|++|+++|.|+.|||+
T Consensus 272 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 349 (512)
T 3fce_A 272 VLPNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIV 349 (512)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEE
T ss_pred cCCHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEE
Confidence 999999999999996 489999999999987665432111 123567899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
|+| |+++.|||++|+.|.+.|.. +.+|||+|||+|++
T Consensus 350 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 350 IVG--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred Eec--cccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 999 99999999999999998842 34669999999974
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-59 Score=514.64 Aligned_cols=377 Identities=21% Similarity=0.241 Sum_probs=309.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++||++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 8 l~~~l~~~-a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 80 (509)
T 3ivr_A 8 LADVYRRN-AALFPDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIG 80 (509)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHCCCceEEEECC------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 78999998 89999999999744 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++||+|.++.+++.+++++++++++|++.... ..+.. .......+..++.++...
T Consensus 81 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~---------- 137 (509)
T 3ivr_A 81 AILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAG----VLPSLGGVKKAYAIGDGS---------- 137 (509)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHH----HGGGCSSCCEEEESSCCC----------
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHh----hhcccCCceEEEEcCCCC----------
Confidence 9999999999999999999999999999987642 11111 112334556666554321
Q ss_pred CCCcchhhhhcC-cCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
..+.+... ......+.....++|++||+|||||||.||||+++|++++... ......++++++|++++.+|++|
T Consensus 138 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~ 212 (509)
T 3ivr_A 138 ----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQ-SSLVDAWRLTEADVNLGMLPLFH 212 (509)
T ss_dssp ----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTS
T ss_pred ----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHH-HHHHHhhCCCCCcEEEEeCCCcc
Confidence 11111111 1112223345678999999999999999999999999976655 44555789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++. .++.+++.|++.++... +++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++
T Consensus 213 ~~g~~-~~~~~~~~~g~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~l~~lr~~~~~g~~ 283 (509)
T 3ivr_A 213 VTGLG-LMLTLQQAGGASVIAAK----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA----APAQLASLRAVTGLDTP 283 (509)
T ss_dssp HHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----CGGGGTTCCEEEEECCH
T ss_pred hhHHH-HHHHHHHhCCcEEEecc----cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----cccchhhhheecccCCh
Confidence 99864 45555666666666552 59999999999999999999999999999875 24467899999999997
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
++.+.+.+.++ +++++|.||+||++++++..... ....++|+|++|++++|+|++++++|+|++|||+|+|
T Consensus 284 ---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g- 354 (509)
T 3ivr_A 284 ---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG- 354 (509)
T ss_dssp ---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES-
T ss_pred ---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec-
Confidence 88899999885 48999999999999766554322 2334599999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+++|+.|.+.|. +|||||||+|++
T Consensus 355 -~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~ 385 (509)
T 3ivr_A 355 -PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRF 385 (509)
T ss_dssp -TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEE
T ss_pred -CCccccccCCHHHhHHHhh---cCCcccccEEEE
Confidence 9999999999999999874 789999999985
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-59 Score=512.85 Aligned_cols=378 Identities=17% Similarity=0.217 Sum_probs=312.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.++|+++ |+++|+++|+++.+ +++||+||+++++++|+.|++. |+++|++|+|+++|++++++++|||+++
T Consensus 3 l~~~l~~~-a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTH-AETYPQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 57888888 89999999999644 8899999999999999999875 8889999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++.++++++++++||+++........ ..+. .+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~-~~--------------- 121 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ-TV--------------- 121 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC-EE---------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc-ee---------------
Confidence 9999999999999999999999999999997653211000 0000 11
Q ss_pred CCCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
.+.++.... ..........++|++||+|||||||.||||+++|++++... .+....++++++|++++.+|++
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 122 ------SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFT-DWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ------EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHH-HHHHHHSTTTTTCEEEECSCTT
T ss_pred ------cHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHH-HHHHHhcCCCccceEEEeCCcc
Confidence 111111111 11122334578999999999999999999999999976655 4455578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ +.++.+|+.|+++++.+.... +++..+++.|+++++|++.++|+++..++.... .....++++|.+++|||
T Consensus 195 ~~~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLSV-MDLYPCLQSGGTLHCVTKDAV-NKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHHH-HHHHHHHHTTCEEEECCHHHH-HSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHhcCCEEEEcChhhh-cCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 99984 678999999999999864222 388999999999999999999999999988754 24556889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC---CCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++.+++.+.++ +++++|.||+||+++.++..... .......++|+|++|++++|+|++|+++|.|++|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999996 48999999999998765543111 1123556799999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcCCCCc-eEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~~~~g-~yrTGDlgr~ 635 (635)
|+| |++++|||++|+.|.+.|+...++ ||+|||+|++
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 999 999999999999999998753233 7999999974
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=513.40 Aligned_cols=379 Identities=16% Similarity=0.176 Sum_probs=310.4
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 6 l~~~l~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 78 (521)
T 3l8c_A 6 MIDSIEQF-AQTQADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSG 78 (521)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHCCCCcceecCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 67889998 89999999999754 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++|+++......... .++.+...
T Consensus 79 ~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~---------------------~~~~~~~~----------- 126 (521)
T 3l8c_A 79 HAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI---------------------SLVSLSEI----------- 126 (521)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS---------------------EEEEHHHH-----------
T ss_pred CEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC---------------------cccchhhh-----------
Confidence 9999999999999999999999999999987653221111 01111100
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh--cCCCCCcEEEEeCCcc
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCG 439 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~~l~ 439 (635)
.................++|+++|+|||||||.||||+++|++++.... +.... +++.+++++++..|++
T Consensus 127 -------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 198 (521)
T 3l8c_A 127 -------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTN-WMIEDAAFDVPKQPQMLAQPPYS 198 (521)
T ss_dssp -------HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHH-HHHHCTTTCCCSSCEEECCSCTT
T ss_pred -------hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHH-HHhhccccCCCCCCeEEecCCcc
Confidence 0000000111122345789999999999999999999999999766543 33333 6788999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ +.++.+|..|+++++.+.... .++..+++.|+++++|++.++|+++..++.... ....++++||.+++||+
T Consensus 199 ~~~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~ 274 (521)
T 3l8c_A 199 FDLSV-MYWAPTLALGGTLFALPKELV-ADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDGE 274 (521)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCGGGT-TCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHhcCCEEEEcCHHHh-hCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEecc
Confidence 99884 678889999999999875433 389999999999999999999999999987654 24557899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC---CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++.+++.+.++ +++++|.||+||+++.++...... ......++|+|++|++++|+|++|+++|.|+.|||+
T Consensus 275 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~ 352 (521)
T 3l8c_A 275 ELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEII 352 (521)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEE
T ss_pred cCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEE
Confidence 999999999999986 489999999999987654321110 113456899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
|+| |++++|||++|+.|.+.|+. +.+|||+|||+|++
T Consensus 353 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 390 (521)
T 3l8c_A 353 VTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSL 390 (521)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEE
Confidence 999 99999999999999999853 34679999999985
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=511.95 Aligned_cols=396 Identities=17% Similarity=0.163 Sum_probs=310.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.+. +..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~-a~~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLR-ALHSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHH-HHHCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-HHhCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 378999998 899999999998652 44689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC---CHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 281 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 281 Ga~~vpld~~~---~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
|++++|++|.+ +.+++.+++++++++++|++..... .+.... ....+....+..+...
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~------- 149 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---------KFTADE---LNTNPKFLKIPAIALE------- 149 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHH---------HHCC--------CCEETTEEEEEGG-------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHH---------HHHHhh---hhhcccccccceeech-------
Confidence 99999999988 4578999999999999998764311 000000 0000111111111100
Q ss_pred cccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
+...............++|++||+|||||||.||||+++|++++.+.. .....++++++|++++++|
T Consensus 150 ------------~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p 216 (590)
T 3kxw_A 150 ------------SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN-KIFTSFHMNDETIIFSWLP 216 (590)
T ss_dssp ------------GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHH-HHHHHTTCCTTCEEEECSC
T ss_pred ------------hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHH-HHHHhhCCCCcCeEEEecC
Confidence 000000111223346789999999999999999999999999776654 4445789999999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc-ccccCCCCCceEEEe
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGS 516 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr~v~~ 516 (635)
++|+.++...++.+|+.|+++++.+......++..+++.|+++++|++.++|+++..+++.... .....++++||.+++
T Consensus 217 ~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~ 296 (590)
T 3kxw_A 217 PHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFN 296 (590)
T ss_dssp TTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEE
T ss_pred CCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhh
Confidence 9999997656889999999999976421111788999999999999999999999999875321 234567899999999
Q ss_pred cCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCC-------------------------CCCCCCCCC
Q 006688 517 VGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPG-------------------------AWPQKPGSA 568 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~-------------------------~~~~~~~si 568 (635)
|||+++++++++|.+.++. ++.+++|.||+||+++.++..... .......++
T Consensus 297 gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (590)
T 3kxw_A 297 GAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSS 376 (590)
T ss_dssp CSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEecc
Confidence 9999999999999998842 235799999999999876543211 111234689
Q ss_pred CCCCCCCeEEEEcCC-CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCC----CCc--eEEcCCeEec
Q 006688 569 TFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCSR 635 (635)
Q Consensus 569 G~pl~g~~v~IvD~~-g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~----~~g--~yrTGDlgr~ 635 (635)
|+|+++ ++|+|++ ++++|.|++|||+|+| |++++|||++|+.|.+.|... .+| ||||||+|++
T Consensus 377 G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ 446 (590)
T 3kxw_A 377 GNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFL 446 (590)
T ss_dssp CEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEE
T ss_pred CCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEE
Confidence 999998 8999976 9999999999999999 999999999999999998631 124 9999999974
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-58 Score=505.55 Aligned_cols=367 Identities=19% Similarity=0.245 Sum_probs=296.1
Q ss_pred chHHHHHHhhhhhccCCC-ceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 199 TNICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 199 ~~~~~~~l~~~~a~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
+..+.++|+++ ++++|+ ++|+++.+ +++||+||+++++++|+.|+ .|++|+|+++|++++++++|||
T Consensus 21 ~~tl~~~l~~~-a~~~p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 21 MSSLFPALSPA-PTGAPADRPALRFGE------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp ---CCTTTSSC-CCSGGGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred cchhHHHHHHH-HHhCCCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 34567788887 788887 99999754 89999999999999998875 3889999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
+++|++++||||.++.+++.++++++++++||++....... ....+.. +.++..
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~------------------~~~~~~~-~~~~~~------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPP------------------ALGALER-VDVDVR------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCG------------------GGTTSEE-EECCTT-------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccch------------------hhccccc-cccccc-------
Confidence 99999999999999999999999999999999986531100 0011111 111110
Q ss_pred cccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
.....+.....++|++||+|||||||.||||+++|++++.+. ......++++++|++++.+|
T Consensus 143 -----------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p 204 (505)
T 3nyq_A 143 -----------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTL-DALADAWQWTGEDVLVQGLP 204 (505)
T ss_dssp -----------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-HHHHHHHTCCTTCEEEECCC
T ss_pred -----------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHH-HHHHHHhCCCCCcEEEEecc
Confidence 011112234568999999999999999999999999976655 44555789999999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc-cccCCCCCceEEEe
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-VTRYSRKSLRVLGS 516 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~-~~~~~l~sLr~v~~ 516 (635)
++|..++++.++.+|..|+++++.+. +++..+++.+ ++++|+++++|+++..|++..... .....++++|.+++
T Consensus 205 ~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~ 279 (505)
T 3nyq_A 205 LFHVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVS 279 (505)
T ss_dssp TTSHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEE
Confidence 99999987889999999999999864 5899999999 889999999999999998743210 11234678999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCC---Ccce
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSG 593 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~---g~~G 593 (635)
|||++++++.+++.+.++ .+++|.||+||+++.++.... ...+.+++|+|++|++++|+|+++++++. |++|
T Consensus 280 gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~G 354 (505)
T 3nyq_A 280 GSAALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVG 354 (505)
T ss_dssp CSSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCE
T ss_pred CCCCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCC--CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceE
Confidence 999999999999999887 789999999999876654432 23567889999999999999999999886 8999
Q ss_pred EEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 355 El~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~ 392 (505)
T 3nyq_A 355 EIQVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVR 392 (505)
T ss_dssp EEEEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEE
T ss_pred EEEEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEE
Confidence 999999 99999999999999999864 789999999985
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=500.30 Aligned_cols=381 Identities=15% Similarity=0.087 Sum_probs=298.5
Q ss_pred HHHHHhhhhhccCCCceEEEEEcC----CCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEAN----DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~----~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
+.++|+++ ++++|+++|+++.+. ..+..+++||+||+++++++|+.|++.|+ +||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~-a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETW-AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHH-HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 57889998 899999999997642 11234789999999999999999999999 7999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
+++|++++||+|.++.+++.+++++++++++|+++........ .....++....
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~~~-------- 153 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------------------PPETKVLDTKN-------- 153 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------------------CTTCEEEETTC--------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------------------Cccceeecccc--------
Confidence 9999999999999999999999999999999998664321100 11111221111
Q ss_pred cccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHH-------hcCCCCCc
Q 006688 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPSD 430 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~-------~~~~~~~d 430 (635)
..+.+...............++++|||+|||||||.||||+++|++++......... .+.+...+
T Consensus 154 --------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 154 --------QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp --------HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred --------hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 011111111111222234457889999999999999999999999976655333221 24577889
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (635)
++++.+++.|+.+ ...++.++..|+++++.+.. ..++.+++.|+++++|++.++|++++.+... ..++++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------~~~~~~ 295 (562)
T 3ite_A 226 KFLCLASRAFDVH-IGEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------PEDAPH 295 (562)
T ss_dssp EEECCSCTTSTHH-HHHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------GGGSTT
T ss_pred eEEEecCchhhhh-HHHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------ccccCc
Confidence 9999999999987 46788999999999986532 1357788999999999999999998887433 346789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcC-CCCccCC
Q 006688 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG 589 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~ 589 (635)
||.+++|||++++++.++|.+.++ ++++|.||+||+++.++...... ..+..++|+|+++++++|+|+ .++++|+
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 999999999999999999988665 88999999999987655432211 245678999999999999995 6889999
Q ss_pred CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 590 g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|++|||+|+| +++++|||++|+.+...+. +.++||||||+|++
T Consensus 372 g~~GEl~v~g--~~v~~GY~~~p~~t~~~~~-~g~~w~~TGDlg~~ 414 (562)
T 3ite_A 372 GMAGELVIEG--SLVANGYLNRPDAKGFCDI-NGRKMYRTGDIVRM 414 (562)
T ss_dssp TSCEEEEEES--TTSCCEESSCTTCCSEEEE-TTEEEEEEEEEEEE
T ss_pred CCceEEEEec--cccchhhCCCccccccccC-CCCEEEecCCEEEE
Confidence 9999999999 9999999999998865433 22349999999985
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=491.33 Aligned_cols=382 Identities=18% Similarity=0.203 Sum_probs=294.2
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|++. +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~-a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQ-AQQNGHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHH-HHHHTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHhcCCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 45678888 89999999999643 7899999999999999999987 89999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++|++.............. .+..+.......... .....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~ 136 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLD--------------DIEFAGRDITTNGLL--DNTMG 136 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETT--------------C---------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccc--------------cceeeeeeccccccc--ccccc
Confidence 99999999999999999999999999999877543321110000 000000000000000 00000
Q ss_pred CCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
............... .........++|+|||+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~~ 215 (501)
T 3ipl_A 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI-GCKESLGFDRDTNWLSVLPIYH 215 (501)
T ss_dssp -------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHH-HHHHHTCCCTTCEEEECSCTTS
T ss_pred cccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHH-HHHHhhCCCccCEEEEeCcHHH
Confidence 000000000000000 01112345789999999999999999999999999776554 4455789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++ ..++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.... ...+||.+++|||+
T Consensus 216 ~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 216 ISGL-SVLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----EPYNLQKILLGGAK 285 (501)
T ss_dssp HHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----SCTTCCEEEECSSC
T ss_pred HHHH-HHHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----CcCcccEEEEeCCC
Confidence 9996 458889999999999875 5999999999999999999999999999987532 12389999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++.+++.+ ++ ++++|.||+||+++.++.........+++++|+|++|++++|+|++ .|+.|||+|+|
T Consensus 286 l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g- 355 (501)
T 3ipl_A 286 LSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG- 355 (501)
T ss_dssp CCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES-
T ss_pred CCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec-
Confidence 99999999887 44 8899999999998755443222222466789999999999999976 45689999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+++|+.|.. | .+|||+|||+|++
T Consensus 356 -~~~~~gY~~~~~~t~~-~---~~g~~~TGDl~~~ 385 (501)
T 3ipl_A 356 -ANVMNGYLYPTDLTGT-F---ENGYFNTGDIAEI 385 (501)
T ss_dssp -TTSCSCCSBSTTCCCS-E---ETTEEEEEEEEEE
T ss_pred -cchhhhhCcChhhcch-h---cCCceecCCEEEE
Confidence 9999999999998876 3 3789999999985
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=297.94 Aligned_cols=223 Identities=19% Similarity=0.165 Sum_probs=180.5
Q ss_pred CCC-CCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 384 VDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 384 ~~~-~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
..+ +++++|+|||||||.||||+++|+++....... ....++++++|++++.+|++|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 899999999999999999999999975543222 12346899999999999998777666678889999999998
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccc
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l 540 (635)
.+. +++..+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.++|.+.++ +++
T Consensus 162 ~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 234 (436)
T 3qov_A 162 AAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VKA 234 (436)
T ss_dssp CCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SEE
T ss_pred CCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---ccE
Confidence 765 4899999999999999999999999999876432111223789999999999999999999999997 889
Q ss_pred cccccccccccc-ccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHh
Q 006688 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (635)
Q Consensus 541 ~n~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~ 618 (635)
+|.||+||+++. +..... ....+|.|.+++.++|+| ++++++|.|+.|||+|+| .. .+.
T Consensus 235 ~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~--~~------------~~~ 295 (436)
T 3qov_A 235 YNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTT--LD------------REM 295 (436)
T ss_dssp EEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEE--SS------------CCS
T ss_pred EecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEec--cC------------cCC
Confidence 999999999654 322221 122367788899999999 799999999999999999 31 112
Q ss_pred hcCCCCceEEcCCeEec
Q 006688 619 YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 619 ~~~~~~g~yrTGDlgr~ 635 (635)
+ .++||+|||+|++
T Consensus 296 ~---~~~~y~TGDl~~~ 309 (436)
T 3qov_A 296 M---PLIRYRTRDLTRI 309 (436)
T ss_dssp S---CCCSEEEEEEECE
T ss_pred c---eEEEEEcCCEEEE
Confidence 1 3689999999985
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=295.49 Aligned_cols=203 Identities=19% Similarity=0.157 Sum_probs=169.3
Q ss_pred CCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCC
Q 006688 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 465 (635)
Q Consensus 386 ~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~ 465 (635)
.+|+|||+|||||||.||||+++|++++.++ ......++++++|++++++|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASA-AMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHH-HHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 4789999999999999999999999977655 445557999999999999999999995 5688899999999998642
Q ss_pred CCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccc
Q 006688 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (635)
Q Consensus 466 ~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG 545 (635)
++ +++.|+++++|++.++|+++..|++... ...++++||.+++|||++++++.+++.+ ++ ++++|.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~---~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSA---TSGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTT---TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhcccc---ccccCCcceEEEEcccCCCchheecccc-cC---ceEEeccc
Confidence 13 3567899999999999999999998764 3446889999999999999999999876 44 88999999
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCc
Q 006688 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (635)
Q Consensus 546 ~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g 625 (635)
+||++..++..... ....+.+|.|.||+.+.+.+ .|||+++| +.. .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g--~~~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISG--AVT------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEES--GGG------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEec--ccc------------------cCc
Confidence 99998776654332 24567899999999888743 69999999 311 278
Q ss_pred eEEcCCeEec
Q 006688 626 YYFTGDGCSR 635 (635)
Q Consensus 626 ~yrTGDlgr~ 635 (635)
||||||+|++
T Consensus 229 ~~~TGDlg~~ 238 (358)
T 4gs5_A 229 TVQTNDLVEI 238 (358)
T ss_dssp CEEEEEEEEE
T ss_pred ceecCCcccc
Confidence 9999999985
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=288.41 Aligned_cols=224 Identities=19% Similarity=0.129 Sum_probs=175.7
Q ss_pred cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcc-eecchhHHhHHHhhcCcEEE
Q 006688 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCG-WITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~-~~~g~~~~i~~~L~~G~~lv 459 (635)
...++++++|+|||||||.||||+++|+++....... ....++++++|++++..|+. |..+ ...++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LGAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hHHHHHHHHcCCEEE
Confidence 3467899999999999999999999999966543221 12357899999999999984 5554 456788999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcc
Q 006688 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (635)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~ 539 (635)
+.+. ++++.+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.+++.+.++ ++
T Consensus 165 ~~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 237 (437)
T 2y27_A 165 PFGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---ID 237 (437)
T ss_dssp CCCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cC
Confidence 8764 4899999999999999999999999999875321101112478999999999999999999999887 88
Q ss_pred ccccccccccccc-ccccCCCCCCCCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecCCCcchhhhcCChhHHHH
Q 006688 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (635)
Q Consensus 540 l~n~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~ 617 (635)
++|.||+||+++. +...... ....++.|.+++.++|+|+ +|+++|.|+.|||+|+| .. .+
T Consensus 238 v~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~t------------~~ 299 (437)
T 2y27_A 238 AVDIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS--LT------------KE 299 (437)
T ss_dssp EEEEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CS
T ss_pred EEecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec--CC------------cC
Confidence 9999999998543 3322221 1112566778999999994 69999999999999999 21 12
Q ss_pred hhcCCCCceEEcCCeEec
Q 006688 618 TYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 618 ~~~~~~~g~yrTGDlgr~ 635 (635)
.| .++||+|||+|++
T Consensus 300 ~~---~~~~y~TGDl~~~ 314 (437)
T 2y27_A 300 AL---PIIRYRTRDLTRL 314 (437)
T ss_dssp SS---CCCSEEEEEEECE
T ss_pred Cc---hhheeecCCEEEE
Confidence 22 2689999999975
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=288.12 Aligned_cols=225 Identities=20% Similarity=0.145 Sum_probs=175.4
Q ss_pred cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
...++++++|+|||||||.||||+++|+++....... ....++++++|++++..|+++..+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 3467899999999999999999999999965543221 12257899999999999995433334567889999999998
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccc
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l 540 (635)
.+. ++++.+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.+++.+.++ +++
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 240 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDA 240 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEE
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCE
Confidence 765 3899999999999999999999999999875321101112479999999999999999999999987 889
Q ss_pred cccccccccccc-ccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHh
Q 006688 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (635)
Q Consensus 541 ~n~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~ 618 (635)
+|.||+||+++. +...... .....+.|.+++.++|+| ++|+++|.|+.|||+|+| .. .+.
T Consensus 241 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~--~t------------~~~ 302 (443)
T 2y4o_A 241 LDIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS--LT------------KEA 302 (443)
T ss_dssp EEEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CSS
T ss_pred EeccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC--CC------------ccc
Confidence 999999998543 3322221 111245567899999999 469999999999999999 21 122
Q ss_pred hcCCCCceEEcCCeEec
Q 006688 619 YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 619 ~~~~~~g~yrTGDlgr~ 635 (635)
| ..+||+|||+|++
T Consensus 303 ~---p~~~y~TGDl~~~ 316 (443)
T 2y4o_A 303 M---PVIRYRTRDLTAL 316 (443)
T ss_dssp S---CCSSEEEEEEECE
T ss_pred C---hhheeecCCEEEE
Confidence 2 2679999999975
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=281.54 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=161.1
Q ss_pred cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCc-ceecchhHHhHHHhhcCcEEE
Q 006688 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l-~~~~g~~~~i~~~L~~G~~lv 459 (635)
...++++++|+|||||||.||||+++|+++....... ....++++++|++++.+|+ .|+.++ ...+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 3478899999999999999999999999966554321 1234678899999999999 888885 45666789999 55
Q ss_pred EecCCCCCCChh-----------------------HHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 460 VFEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 460 l~~~~~~~~d~~-----------------------~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
+..+ ++|. .+++.|+++++|++.++|+++..|++... ....++++||.+++
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITL 238 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEE
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEE
Confidence 5433 4666 78889999999999999999999987632 12345678999999
Q ss_pred cCCCCCHHHHHHHH-HHhCCCCcccccccccccccccccccCCCCCCCCCC-CCCCC------CCCCeEEEEcC-CCCcc
Q 006688 517 VGEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEI 587 (635)
Q Consensus 517 gGe~l~~~l~~~~~-~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~-siG~p------l~g~~v~IvD~-~g~~v 587 (635)
|||++++++.+++. +.+| +++++|.||+||+++++... +. ++|+| +++++++|+|+ +++++
T Consensus 239 gGe~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~~--------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~v 308 (369)
T 3hgu_A 239 GGTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRSL--------LITSESQQVIYDSFSPFITYDVVDSITAQTV 308 (369)
T ss_dssp ESSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEEC--------CBCTTCSSCEEECCTTTEEEEEECTTTCSBC
T ss_pred CCccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceecc--------ccccCCCcccccCCCCCeEEEEECCCCCcCC
Confidence 99999999999999 8885 48999999999988655321 12 58999 99999999997 99999
Q ss_pred CCCcceEEEEec
Q 006688 588 EGECSGYLCIKS 599 (635)
Q Consensus 588 p~g~~GEL~i~g 599 (635)
|.|++|||+|++
T Consensus 309 p~G~~GEl~vt~ 320 (369)
T 3hgu_A 309 EYGERGNVIVTH 320 (369)
T ss_dssp CTTCEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 999999999998
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.014 Score=63.66 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGY 412 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l 412 (635)
..++.+.+..-||||| |++|-+.+|...+
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l 119 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYL 119 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHH
Confidence 4577788999999999 7899999999874
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.057 Score=58.98 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchHH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGYM 413 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l~ 413 (635)
..++.+.++.-||||| |+||-|.+|...+-
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~ 126 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELD 126 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHH
Confidence 3577788999999999 88999999999743
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.093 Score=57.02 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGY 412 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l 412 (635)
..++.+.+..-||||| |++|-+.+|...+
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l 124 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELM 124 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHH
Confidence 4567788999999999 8899999998874
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.0031 Score=68.67 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCcccchhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHH
Q 006688 104 AGKISRLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADI 163 (635)
Q Consensus 104 ~~~~~L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~ 163 (635)
.++|||++.+.+.++ +.+. +.|++++|+++++++++++|.++|++++++|+.+++++
T Consensus 460 ~~~~~L~l~~~~~~~~l~~~---~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~l 517 (520)
T 2jgp_A 460 HAKFDLTFSATEEREEMTIG---VEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEI 517 (520)
T ss_dssp BCSSSEEEEEEECSSCEEEE---EEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGC
T ss_pred ceeeeeEEEEEECCCeEEEE---EEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhhc
Confidence 789999999987655 6666 99999999999999999999999999999999988776
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=92.04 E-value=0.0037 Score=66.25 Aligned_cols=56 Identities=5% Similarity=0.036 Sum_probs=48.8
Q ss_pred CCcccchhhhhh--cccCCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccC---hhhHHHHH
Q 006688 104 AGKISRLNAVIL--GEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVED---PAGFWADI 163 (635)
Q Consensus 104 ~~~~~L~~~v~~--~~~~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~---p~~~~~~~ 163 (635)
..+ ||.+.+.+ ++++.+. +.|++++|+++++.+++++|.++|++++++ |+.+++++
T Consensus 358 ~~~-~l~l~v~~~~~~~l~~~---~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 358 SAE-GINFTFRGSPQHELCLD---ITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp CCC-SEEEEEEECTTSCEEEE---EEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred Ccc-ceEEEEEecCCCcEEEE---EEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 344 88888873 3346666 999999999999999999999999999999 99999999
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.015 Score=62.78 Aligned_cols=58 Identities=9% Similarity=-0.103 Sum_probs=42.7
Q ss_pred CCCccc---chhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHH
Q 006688 103 GAGKIS---RLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (635)
Q Consensus 103 ~~~~~~---L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~ 164 (635)
++++|| |.+.+...++ +.+. +.|++++| ++++++++++|.++|++++++|+.+++++.
T Consensus 408 ~~~~~~~~~l~l~v~~~~~~l~~~---~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l~ 469 (493)
T 4hvm_A 408 GTDTWDGTTTDLSVGELGEDMVIV---LDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHST 469 (493)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEE---EEECC--------CHHHHHHHHHHHHHHHCTTSBCCC--
T ss_pred cccccCCcceEEEEEEeCCeEEEE---EEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 446788 8888877655 6667 99999999 999999999999999999999999998884
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.028 Score=59.87 Aligned_cols=54 Identities=7% Similarity=0.025 Sum_probs=47.0
Q ss_pred CCCcccchhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhH
Q 006688 103 GAGKISRLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (635)
Q Consensus 103 ~~~~~~L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (635)
+.++|+|.+.+...++ +.+. +.|++++|+++++++++++|.++|++++++|+..
T Consensus 406 ~~~~~~l~~~~~~~~~~l~~~---~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~~~~~ 460 (466)
T 2xhg_A 406 SEVYTALNITGLIEGGELVLT---FSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQS 460 (466)
T ss_dssp SBCCCSEEEEEEEETTEEEEE---EEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEEEECCEEEEE---EEEChhhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4468999998876544 7777 9999999999999999999999999999998765
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=4.4 Score=42.23 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCCceEEE-EEcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecC
Q 006688 214 LGDKVAIY-WEANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (635)
Q Consensus 214 ~pd~~Al~-~~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld 288 (635)
.++.+|.+ +..+.++ ....+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++.+..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 45666644 3322222 235689999998888888888889999999999888763 333456788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 289 ~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
. ...+++...+++.++.+++....
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHH
Confidence 5 47889999999999999887654
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=85.17 E-value=4.7 Score=42.10 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCCceEEE-EEcCCCCc--cEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecC
Q 006688 214 LGDKVAIY-WEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (635)
Q Consensus 214 ~pd~~Al~-~~~~~~~~--~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld 288 (635)
.++.+|.+ +..+.++. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+..+++.+..|+..++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 45666644 33322222 34689999998888888888889999999999888764 334556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 289 ~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
+. ..+++...+++.++.+++....
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHH
Confidence 64 7888999999999999887654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=5.8 Score=41.31 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=74.4
Q ss_pred CceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecCCC
Q 006688 216 DKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 290 (635)
Q Consensus 216 d~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld~~ 290 (635)
+.+|.+. ..+.++ ....+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++.+..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 6777653 222212 245689999999998888888889999999999988753 34455678889999998887654
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCC
Q 006688 291 FSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 291 ~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
..+++...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788999999999999886544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 635 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-174 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-139 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-59 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-49 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-45 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 7e-43 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-41 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 509 bits (1311), Expect = e-174
Identities = 253/507 (49%), Positives = 341/507 (67%), Gaps = 11/507 (2%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
+ + + L+ +P++Y YK+S+ DP FW + W + Q+V + + GN
Sbjct: 5 IPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKVKNTSFA--PGN 60
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
V I+W++ G N+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN
Sbjct: 61 VSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANT 119
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
L D+G+KKGD V IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D ++V
Sbjct: 120 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 179
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT++ R ++I LK VD AL + + + L T + WQ+GRD+WW
Sbjct: 180 ITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR------TGSDIDWQEGRDLWW 233
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
+D++ K + + E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P
Sbjct: 234 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 293
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
D+YWCTAD GW+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTA
Sbjct: 294 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTA 353
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R+LM +G++ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTE
Sbjct: 354 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGGFMITPLPGA K GSAT PFFGVQP +VD +G EG G L I SWPG RTL
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 473
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSR 635
+GDHER+E TYF F YF+GDG R
Sbjct: 474 FGDHERFEQTYFSTFKNMYFSGDGARR 500
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 418 bits (1076), Expect = e-139
Identities = 227/498 (45%), Positives = 304/498 (61%), Gaps = 13/498 (2%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
Q Y ++K S+EDPA F+ A++F W + + + + R WF G N
Sbjct: 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNA 60
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAV 260
CYNC+DR+ +K AI +E ++PG ++TY +LL++VCQ+A L +GV+KGD V
Sbjct: 61 CYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 119
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
+Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL RI D KVVIT++ RG K
Sbjct: 120 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKV 179
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I K IVD AL E + T + + RD+ W KY T
Sbjct: 180 IETKRIVDDALRETPGVRHVLVYRKT-------NNPSVAFHAPRDLDWATEKKKYKTYYP 232
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VD+EDPLFLLYTSGSTG PKGV H+T GY++ T +Y FD DV++ D GW
Sbjct: 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 292
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
ITGH+YV YGP+L G + +VFEG P YP+ R WDI+D++KVT FY APT +R L R G+
Sbjct: 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD 352
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
Y+ +S KSLR LGSVGEPI W W+ +G + PI DT+WQTE+G ++TPL G
Sbjct: 353 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 412
Query: 561 -WPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYET 617
P KPGSA+FPFFG+ V++D E G L +K++WP RT++ +H+RY
Sbjct: 413 VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 472
Query: 618 TYFKPFPGYYFTGDGCSR 635
TY P+PGYYFTGDG ++
Sbjct: 473 TYLNPYPGYYFTGDGAAK 490
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 206 bits (525), Expect = 1e-59
Identities = 79/436 (18%), Positives = 135/436 (30%), Gaps = 45/436 (10%)
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
++ L+R G K + G TY+++ Q+ +L L+ +GV GD V
Sbjct: 14 WDFLERAAAL-FGRKEVVSRL--HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 70
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
A A +GAV S +A + + KV++ +
Sbjct: 71 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDP---------N 121
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
L +V+A E + + + + +
Sbjct: 122 LLPLVEAIRGELKT-----------------VQHFVVMDEKAPEGYLAYEEALGEEADPV 164
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
V + YT+G+TG PKGV+++ ++H+ +
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 224
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ Y L GA V+ D ++ D VT PT+ +L
Sbjct: 225 NAWCLPYAATLVGAKQVLP---GPRLDPASLVELFDGEGVTFTAGVPTVWLALAD--YLE 279
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFN-----VVGDSRCPISDTWWQTETGGFMITPL 557
T + K+LR L G S F G S Q + +
Sbjct: 280 STGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 339
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSWPGAFRTLYGDHERY 615
P V+ + DE+G V +G+ G + +K W YG+ E
Sbjct: 340 EEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWI--TGGYYGNEEAT 397
Query: 616 ETTYFKPFPGYYFTGD 631
+ G++ TGD
Sbjct: 398 RSALTP--DGFFRTGD 411
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 179 bits (454), Expect = 1e-49
Identities = 67/442 (15%), Positives = 135/442 (30%), Gaps = 39/442 (8%)
Query: 193 WFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI 252
G + + R A + +A D ++ +TY++ + +LA +K
Sbjct: 14 LEDGTAGEQLHKAMKRY--ALVPGTIAF----TDAHIEVNITYAEYFEMSVRLAEAMKRY 67
Query: 253 GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312
G+ +++ ++ + +L IG + ++ L + +P VV S
Sbjct: 68 GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK 127
Query: 313 AVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372
+ + K + + ++++ + +Q +
Sbjct: 128 KGLQ-------------KILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLP 170
Query: 373 PKY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430
P + + + ++ +SGSTG PKGV V + F
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN---Q 227
Query: 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
+ TA + H L + + YK+ PT
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
L + + +Y +L + S G P++ I + TET
Sbjct: 288 LFSFFAKS--TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETT 343
Query: 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLY 609
++ G KPG+ + +VD + G + G LC++ P
Sbjct: 344 SAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR--GPMIMSGYV 399
Query: 610 GDHERYETTYFKPFPGYYFTGD 631
+ E K G+ +GD
Sbjct: 400 NNPEATNALIDK--DGWLHSGD 419
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 167 bits (424), Expect = 1e-45
Identities = 73/426 (17%), Positives = 136/426 (31%), Gaps = 66/426 (15%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
+ VAI E + LTY +L + QLA + G+ K V I + ++L I +
Sbjct: 37 PNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA + G + + + + + + D + ++++T + I V
Sbjct: 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQV------- 143
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+I+ +D + + D +++Y
Sbjct: 144 ------------------------------EIFEEDTIKIREGTNLHVPSKSTDLAYVIY 173
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TG PKG + + F+ + + D A + + +
Sbjct: 174 TSGTTGNPKGT-MLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 232
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
+ + T D + +++ ++T+ PT V ++ S++ L
Sbjct: 233 AS--LYIILKDTINDFVKFEQYINQKEITVITLPPTYVV--------HLDPERILSIQTL 282
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW-PQKPGSATFPFF 573
+ G +PS + + + + TET T + P
Sbjct: 283 ITAGSATSPSLVNKWK-----EKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQ 337
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY----FKPFPGYYFT 629
Q IVDE +G LCI G R + E + F P Y T
Sbjct: 338 NTQIYIVDENLQLKSVGEAGELCIG--GEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 630 GDGCSR 635
GD
Sbjct: 396 GDQARW 401
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 160 bits (404), Expect = 7e-43
Identities = 69/422 (16%), Positives = 126/422 (29%), Gaps = 44/422 (10%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
GD++AI + +Y +L + +LA + +G+++ D V++ LP + E +
Sbjct: 39 GDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVI 92
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A R+GA+ S + + I +A
Sbjct: 93 FALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-------------- 138
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L + QS + G + + + ++ V + D FL
Sbjct: 139 ---------SLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
+ GSTG K + T Y+ + S VY S +L
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSV-EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
VV P ++ ++++ KVTI P L M + S + +
Sbjct: 249 AGGRVVL---SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQV 305
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFG 574
G G + A R V G + + T L + P
Sbjct: 306 G--GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN----YTRLDDPEEIIVNTQGKPMSP 359
Query: 575 VQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
+ D+ +++ +G+L + + G+Y TGD
Sbjct: 360 YDESRVWDDHDRDVKPGETGHLLTRGPYT----IRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 634 SR 635
Sbjct: 416 RL 417
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 154 bits (390), Expect = 3e-41
Identities = 75/420 (17%), Positives = 134/420 (31%), Gaps = 49/420 (11%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ A LT+++L +V +A L G++ V + P ++ IA+
Sbjct: 16 PDHCALAVPARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAI 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R+GAV +++ S LA+ I + + + + + DA
Sbjct: 72 LALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG----------RQVADAIFQSG 121
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ + I L +DG + + E + P F+ Y
Sbjct: 122 SGARIIFLGDL--------------VRDGEPYSYGPPI-------EDPQREPAQPAFIFY 160
Query: 395 TSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
TSG+TG PK + + + + +V + G V +
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
+ VV E + +V + +VT + PT + +L + SLR
Sbjct: 221 LDGTYVVVEEFRP----VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ G + + + + + TE + K G+ P F
Sbjct: 277 VTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLYM-----RQPKTGTEMAPGF 328
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
+ IV G E +G G + + T K G+Y T D
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAAS-DSAFVGYLNQPQATAEKLQDGWYRTSDVA 387
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 635 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 93.74 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 86.07 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4.1e-74 Score=649.06 Aligned_cols=485 Identities=52% Similarity=1.007 Sum_probs=418.5
Q ss_pred ChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEE
Q 006688 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (635)
Q Consensus 141 ~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al 220 (635)
.+++|.+|+++.++||+.||+++++.+.|.++++ +++..+ ...+....+||+++++|..+++|+|| ++.+||++|+
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~wf~~~~~N~~~n~ldrh-~~~~~d~~Al 91 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKILDWITPYQ-KVKNTS--FAPGNVSIKWYEDGTLNLAANCLDRH-LQENGDRTAI 91 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCS-CCEEEE--CCTTCCEEEESTTCEECHHHHHTGGG-HHHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHhheeEECCCc-ccccCc--cCCCCCCCeeCCCChhhHHHHHHHHH-HHhCCCCEEE
Confidence 4799999999999999999999999899999886 454222 12233356899999999999999999 7889999999
Q ss_pred EEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHH
Q 006688 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300 (635)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il 300 (635)
++.+++++..+++||+||.++++++|+.|+++||++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus 92 i~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l 171 (643)
T d1pg4a_ 92 IWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCI 171 (643)
T ss_dssp EEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHH
T ss_pred EEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHH
Confidence 99876667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCC
Q 006688 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380 (635)
Q Consensus 301 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (635)
+++++++||+++......+.......+...+.. .....+.+++.+..... ...........+.+..........
T Consensus 172 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 245 (643)
T d1pg4a_ 172 IDSSSRLVITADEGVRAGRSIPLKKNVDDALKN--PNVTSVEHVIVLKRTGS----DIDWQEGRDLWWRDLIEKASPEHQ 245 (643)
T ss_dssp HHHTCSEEEEESEEEETTEEEESHHHHHHHHTS--TTCCSCCEEEEECSSCC----CCCCCBTTEEEHHHHHTTSCSCCC
T ss_pred HhcCCCEEEEcchhhhhccccchhhhHHHHHhc--cccccceEEEEeccCCc----ccccccccchhhhhhhcccCcccC
Confidence 999999999998877777766666655554432 23456778887765431 122222233334444444444555
Q ss_pred cccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 381 ~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
+...+++|+++|+|||||||.||||+++|++++.+........++++++|++++.+|++|++++.+.++++|+.|+++++
T Consensus 246 ~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl 325 (643)
T d1pg4a_ 246 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325 (643)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 56678999999999999999999999999998877777777788999999999999999999987788899999999999
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccc
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l 540 (635)
+++.+..+++..+++.|++++||+++++|++++.|++.........++++||.+++|||++++++++++.+.++..++++
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i 405 (643)
T d1pg4a_ 326 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPV 405 (643)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCE
T ss_pred ecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceE
Confidence 98877777999999999999999999999999999987665556778999999999999999999999999998667889
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhc
Q 006688 541 SDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620 (635)
Q Consensus 541 ~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~ 620 (635)
+|.||+||+++.++...+...+.+++++|+|++|++++|+|++|+++++|+.|||+|+||+|++++|||++++++.+.++
T Consensus 406 ~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~ 485 (643)
T d1pg4a_ 406 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 485 (643)
T ss_dssp EEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHH
T ss_pred EEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhc
Confidence 99999999998776655555567889999999999999999999999999999999999989999999999999999998
Q ss_pred CCCCceEEcCCeEec
Q 006688 621 KPFPGYYFTGDGCSR 635 (635)
Q Consensus 621 ~~~~g~yrTGDlgr~ 635 (635)
...+|||+|||+|++
T Consensus 486 ~~~~g~~~TGDl~~~ 500 (643)
T d1pg4a_ 486 STFKNMYFSGDGARR 500 (643)
T ss_dssp SSSTTSEEEEEEEEE
T ss_pred ccCCCeEEcCCEEEE
Confidence 878999999999985
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-68 Score=604.72 Aligned_cols=484 Identities=47% Similarity=0.878 Sum_probs=397.8
Q ss_pred HHHHHHHhhhccChhhHHHHHHhh-cccccccccccccccccccCC-CCccccCCCCcchHHHHHHhhhhhccCCCceEE
Q 006688 143 QKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKG-NVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (635)
Q Consensus 143 ~~~~~ll~~~~~~p~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al 220 (635)
+.|.+|+++.++||+.||.+++.. +.|.++++ +++..+...... .+..+||+++++|.++++|++| |+++||++|+
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~-a~~~pd~~Al 78 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFD-KVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRH-ALKTPNKKAI 78 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCS-CSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHH-HTTCTTSEEE
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHhheeEecCCe-EeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHH-HhhCCCCEEE
Confidence 369999999999999999988654 78999887 444333221111 1245899999999999999999 8999999999
Q ss_pred EEEcCCCCccEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHH
Q 006688 221 YWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (635)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~i 299 (635)
++.+++.+..+++||+||.++++++|+.|+ ++||++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++
T Consensus 79 i~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~ 158 (640)
T d1ry2a_ 79 IFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDR 158 (640)
T ss_dssp EEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHH
T ss_pred EEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHH
Confidence 998765567789999999999999999997 6799999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCC
Q 006688 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379 (635)
Q Consensus 300 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (635)
++++++++++++.......+.......+..... ....+.....+...... ...........+...........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 231 (640)
T d1ry2a_ 159 INDGDSKVVITTDESNRGGKVIETKRIVDDALR----ETPGVRHVLVYRKTNNP---SVAFHAPRDLDWATEKKKYKTYY 231 (640)
T ss_dssp HHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT----SCTTCCEEEEECSSCCS---SCCCCSSSEEEHHHHHTTSCSCC
T ss_pred HHhhhccccccchhhhhccchhhhHHHHHhhhh----hhcccceeeeecccccc---ccccccccccccccccccccccc
Confidence 999999999999988777777766666554422 22344444444332200 00011111122222223333334
Q ss_pred CcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEE
Q 006688 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 380 ~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lv 459 (635)
......++|+++|+|||||||.||||+++|++++.+........++++++|++++.+|++|+.++.+.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 44556789999999999999999999999999888777777777899999999999999999998788999999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcc
Q 006688 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (635)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~ 539 (635)
+.+..+..+++..+++.|++++||+++++|++++.|.+.........++++||.+++|||++++++++++.+.+|.....
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 99887766799999999999999999999999999988765555677899999999999999999999999999876678
Q ss_pred cccccccccccccccccCC-CCCCCCCCCCCCCCCCCeEEEEcCCCCc-c-CCCcceEEEEecCCCcchhhhcCChhHHH
Q 006688 540 ISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEKGVE-I-EGECSGYLCIKSSWPGAFRTLYGDHERYE 616 (635)
Q Consensus 540 l~n~YG~TE~~~~~~~~~~-~~~~~~~~siG~pl~g~~v~IvD~~g~~-v-p~g~~GEL~i~g~~~~v~~GY~~~~e~t~ 616 (635)
+++.||+||++........ ...+.+++++|+|++|++++|+|+++.. + +.+..|||+|+|++|+++.|||+++++|.
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~ 471 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL 471 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHH
Confidence 9999999999876655432 3345678899999999999999976543 3 45668999999988899999999999999
Q ss_pred HhhcCCCCceEEcCCeEec
Q 006688 617 TTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 617 ~~~~~~~~g~yrTGDlgr~ 635 (635)
+.|+.+.+|||+|||+|++
T Consensus 472 ~~~~~~~~gw~~TGDlg~~ 490 (640)
T d1ry2a_ 472 DTYLNPYPGYYFTGDGAAK 490 (640)
T ss_dssp HHHTSSSTTSEEEEEEEEE
T ss_pred hhhccCCCCeEEcCCceeE
Confidence 9999878899999999985
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.1e-55 Score=481.92 Aligned_cols=399 Identities=20% Similarity=0.211 Sum_probs=317.7
Q ss_pred cCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHH
Q 006688 193 WFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI 272 (635)
Q Consensus 193 w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iv 272 (635)
|.-+..+| +.++|+++ |+++||++|+++... +..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++
T Consensus 5 ~~~~~~~~-l~~~l~~~-a~~~pd~~av~~~~~--g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~ 80 (534)
T d1v25a_ 5 TMMDEELN-LWDFLERA-AALFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE 80 (534)
T ss_dssp CBCCCCCC-THHHHHHH-HHHSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred ccCCCCCC-HHHHHHHH-HHHcCCCeEEEEecC--CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHH
Confidence 33333333 68899998 999999999998653 445789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 006688 273 AMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (635)
Q Consensus 273 a~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (635)
++|||+++|++++|++|.++.+++.++++++++++++++.... .. ...+......++..+.......
T Consensus 81 ~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~ 147 (534)
T d1v25a_ 81 AYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PL----VEAIRGELKTVQHFVVMDEKAP 147 (534)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HH----HHHHGGGCSSCCEEEESSSCCC
T ss_pred HHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh---------hh----HHHHhhcccccceeEEeecccc
Confidence 9999999999999999999999999999999999999887642 11 2223334455666655443220
Q ss_pred ccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHH-HHHHhcCCCCCcE
Q 006688 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT-TFKYAFDYKPSDV 431 (635)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~d~ 431 (635)
. ...... .............++++++|+|||||||.||||+++|.+++..... .....+.+...|+
T Consensus 148 ~----------~~~~~~---~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~ 214 (534)
T d1v25a_ 148 E----------GYLAYE---EALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV 214 (534)
T ss_dssp T----------TCEEHH---HHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCE
T ss_pred c----------cccccc---ccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccc
Confidence 0 000000 1111222334567889999999999999999999999997654322 2222355678899
Q ss_pred EEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCc
Q 006688 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (635)
Q Consensus 432 ~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (635)
+++.+|+.|..++. ..+.++..|+++++.... +++..+...+.+++||++.++|+++..++.... ....++++|
T Consensus 215 ~~~~~p~~~~~~~~-~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~--~~~~~~~~l 288 (534)
T d1v25a_ 215 VLPVVPMFHVNAWC-LPYAATLVGAKQVLPGPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTL 288 (534)
T ss_dssp EEECSCTTSHHHHT-HHHHHHHHTCEEEECTTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSC
T ss_pred cccccchhhhcccc-ccceeeeecceeeecccc---ccccccchhhhhccccccccCchhhhhhhhhhc--cccccccce
Confidence 99999999988854 455677788888876543 599999999999999999999999999987644 245678999
Q ss_pred eEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCC---------CCCCCCCCCCCCCCeEEEEcC
Q 006688 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---------PQKPGSATFPFFGVQPVIVDE 582 (635)
Q Consensus 512 r~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~---------~~~~~siG~pl~g~~v~IvD~ 582 (635)
|.+++||+++++++.+++.+ ++ .++++.||+||++..++....... ..+++++|+|++|++++|+|+
T Consensus 289 r~~~~gG~~~~~~~~~~~~~-~~---~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~ 364 (534)
T d1v25a_ 289 RRLVVGGSAAPRSLIARFER-MG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE 364 (534)
T ss_dssp CEEEECSSCCCHHHHHHHHH-TT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT
T ss_pred eEEEEecCCCCHHHHHHHHH-hC---CeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECC
Confidence 99999999999999998875 44 689999999999987765422110 123468999999999999999
Q ss_pred CCCccCC--CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 583 KGVEIEG--ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 583 ~g~~vp~--g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++++. |++|||+|+| ++++.||+++++.+.+.|.. +|||+|||+||+
T Consensus 365 ~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~~~~--dg~~~TGDlg~~ 415 (534)
T d1v25a_ 365 EGRPVPKDGKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVW 415 (534)
T ss_dssp TSCBCCSSSCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEE
T ss_pred CCCCCCCCCCeeEEEEEcC--CcccceecCChhhhhhhccc--CCCCccCceeEE
Confidence 9999985 7799999999 99999999999999888754 899999999985
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=2.4e-53 Score=469.81 Aligned_cols=395 Identities=16% Similarity=0.193 Sum_probs=305.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.+.++++ + ..|+++|+++.+ .++++||+||.+++.++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 23 l~~~~~~~-~-~~P~~~a~~d~~----~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G 96 (541)
T d1lcia_ 23 LHKAMKRY-A-LVPGTIAFTDAH----IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG 96 (541)
T ss_dssp HHHHHHHH-H-TSTTCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHT
T ss_pred HHHHHHhh-C-CCCCeEEEEeCC----CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 44444444 3 348889998643 33789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.++|+++++++||+++... +.+.+. ....+..+.+++++...+.. .+.
T Consensus 97 ~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~ 159 (541)
T d1lcia_ 97 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNV----QKKLPIIQKIIIMDSKTDYQ----GFQ 159 (541)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHH----HHHCTTCCEEEETTCSSCBT----TBE
T ss_pred eEEEecCCCCCHHHHHHHHHhccceEEeeecccc---------ccchhc----cccccccceeeeecCCcccc----ccc
Confidence 9999999999999999999999999999987642 222222 23346777777765432100 000
Q ss_pred CCCcchhhhhcC---cCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHH--hcCCCCCcEEEEeC
Q 006688 362 DGRDIWWQDVVP---KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY--AFDYKPSDVYWCTA 436 (635)
Q Consensus 362 ~~~~~~~~~~~~---~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~d~~l~~~ 436 (635)
.. ......... ......+.....++++|||+|||||||.||||+++|++++......... ...+.++++++..+
T Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (541)
T d1lcia_ 160 SM-YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 238 (541)
T ss_dssp EH-HHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECS
T ss_pred hh-hhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccc
Confidence 00 000011111 1111223344567899999999999999999999999976544332221 23567899999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|+.|..++ ...+..+..|+.+++... .+.......+.++++|.+.++|.++..++..... ...++++||.+++
T Consensus 239 p~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~--~~~~~~~l~~v~~ 311 (541)
T d1lcia_ 239 PFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI--DKYDLSNLHEIAS 311 (541)
T ss_dssp CTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG--GGSCCTTCCEEEC
T ss_pred cccccccc-cccccccccccccccccc----cccchhHHHHhhhhccccccCccccccccccccc--cccccccceEEEe
Confidence 99999885 556777888888887654 4889999999999999999999999999987653 4567899999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEE
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYL 595 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL 595 (635)
||+++++++.+++.+.++ ...+++.||+||++..++..... ..+++++|+|+||++++|+| +++++++.|++|||
T Consensus 312 gG~~~~~~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel 387 (541)
T d1lcia_ 312 GGAPLSKEVGEAVAKRFH--LPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGEL 387 (541)
T ss_dssp TTCCCCHHHHHHHHHHTT--CSCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred cccccccccccccccccC--CceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCCCCeEEE
Confidence 999999999999999988 35789999999999877665332 35678999999999999999 57999999999999
Q ss_pred EEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 596 ~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+| ++++.||+++++.+...+. .+|||+|||+|++
T Consensus 388 ~v~g--~~~~~gY~~~~~~~~~~~~--~~~~~~TGDl~~~ 423 (541)
T d1lcia_ 388 CVRG--PMIMSGYVNNPEATNALID--KDGWLHSGDIAYW 423 (541)
T ss_dssp EEES--TTSCSEETTBHHHHHHHBC--TTSCEEEEEEEEE
T ss_pred EEcc--CccCCeeCCChhhhhhccc--CCccccCCCeeEE
Confidence 9999 9999999999998877664 3889999999985
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.2e-51 Score=451.32 Aligned_cols=373 Identities=20% Similarity=0.211 Sum_probs=299.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ |+++||++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 24 tl~~l~~~~-a~~~Pd~~Al~~~~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~ 96 (514)
T d1amua_ 24 TIHQLFEEQ-VSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 96 (514)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-HHhCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 489999999 89999999999754 88999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++.+++++++++++|++..... . +....... ........
T Consensus 97 G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~-------~~~~~~~~-~~~~~~~~---------- 149 (514)
T d1amua_ 97 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------L-------IHNIQFNG-QVEIFEED---------- 149 (514)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------H-------HTTSCCCS-EEEECCCS----------
T ss_pred CcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhh---------h-------hhhhcccc-cccccccc----------
Confidence 999999999999999999999999999999875421 1 11111111 11111110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
............+..++++|+|+|||||||.||+|+++|.++.... ......+.+.++|+++..+|+.|
T Consensus 150 ----------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~~ 218 (514)
T d1amua_ 150 ----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLK-VFFENSLNVTEKDRIGQFASISF 218 (514)
T ss_dssp ----------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHH-HHHHHTSCCCTTCEEEECSCTTS
T ss_pred ----------cccccccccCCCCCCcccceEEEEccCCCCCccccccccccccccc-ccccccccccccccccceecccc
Confidence 0001111222334568899999999999999999999999976655 44555789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
..++ +.++.+++.|+++++...... .+....++.+..+.++.+..+|...... ...++.++|.+++||++
T Consensus 219 ~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~G~~ 288 (514)
T d1amua_ 219 DASV-WEMFMALLTGASLYIILKDTI-NDFVKFEQYINQKEITVITLPPTYVVHL--------DPERILSIQTLITAGSA 288 (514)
T ss_dssp THHH-HHHHHHHTTTCEEEECCHHHH-TCHHHHHHHHHHTTCCEEEECHHHHTTS--------CTTTCCSCSEEEEESSC
T ss_pred cccc-ccccccccccccccccccccc-cchhhhhhhhhhhhcccccceeeecccc--------cccccccccEEEEeccc
Confidence 9884 677889999999998764322 3778889999999999999999865432 34567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCC-CCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++.+++.+. ..+++.||+||++.+++.... .......++.|+++++..+.++|+++++++.|+.|||+|+|
T Consensus 289 ~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~ 363 (514)
T d1amua_ 289 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 363 (514)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHhhhhccc-----eeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEcc
Confidence 999999877653 779999999999987655432 22234456789999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhc----CCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYF----KPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~----~~~~g~yrTGDlgr~ 635 (635)
|.+++||+++++.+.+.|. .+.+|||+|||+|++
T Consensus 364 --~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~ 401 (514)
T d1amua_ 364 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW 401 (514)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEE
T ss_pred --CcccccccccccccceeeEeccccCCCceEEECCEEEE
Confidence 8999999999998888764 345789999999985
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.3e-50 Score=442.84 Aligned_cols=390 Identities=19% Similarity=0.213 Sum_probs=308.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ |+++||++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~-a~~~pd~~Al~~~~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 98 (536)
T d1mdba_ 26 TFGDLLRDR-AAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (536)
T ss_dssp CHHHHHHHH-HHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHCCCCeEEEECC------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 389999999 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++++++..... ........ .....+.+...+......
T Consensus 99 G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~--------- 161 (536)
T d1mdba_ 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF----DYRSLARQ----VQSKLPTLKNIIVAGEAE--------- 161 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE----EHHHHHHH----HHHHCTTCCCEEEESCCT---------
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhh----hhhhhhhh----hhhccccccceeeeeccc---------
Confidence 9999999999999999999999999999998764321 11111111 111223333333222211
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
....+.+.. ..........++|+++|+|||||||.||||++||++++.++ ......+++.++|++++..++.|
T Consensus 162 ---~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~-~~~~~~~~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 162 ---EFLPLEDLH---TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSL-KRSVEVCWLDHSTVYLAALPMAH 234 (536)
T ss_dssp ---TSEEGGGCC---CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHH-HHHHHHHTCCTTCEEEECSCTTS
T ss_pred ---cccchhhcc---cCCcCCCccCccchHHhhhcccccccceecccccccccccc-ccccccccccccccccccccccc
Confidence 011111111 22223345678999999999999999999999999977665 45556789999999999999999
Q ss_pred ecchhHHhHHHhhc-CcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 441 ITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 441 ~~g~~~~i~~~L~~-G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
.+++...++..++. |.+++..+. +++..++..+++++++.+..+|..+..+..... .....++++|.+++||+
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~ 308 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred ccceeeccccccccccccccccCC----CCHHHHHHHHhhhccccccccchhhhhhhhhcc--ccccccCcceeEEEecc
Confidence 98865444444444 566655443 599999999999999999999999998877644 24556789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCC-CCeEEEEcCCCCccCCCcceEEEEe
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~-g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++++.+.+++.+.++ ...+..|+.+|.+..+..... ......+++|+|++ +..+.|.++++++++.|+.|||+|+
T Consensus 309 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~ 384 (536)
T d1mdba_ 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTRLDD-PEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (536)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECCTTS-CHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred ccccccccchhhccC---ceeeecccccccccccccccc-ccccccCCcccCCCCcceEEEEcCCCCeecccccceeecC
Confidence 999999999999998 678888888887765443322 22345578999986 5567777789999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| +.+++||+++++.+...+.. +|||+|||++++
T Consensus 385 g--~~~~~gY~~~~~~~~~~~~~--~~~~~tGD~~~~ 417 (536)
T d1mdba_ 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRL 417 (536)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred C--Cccccccccccccccccccc--cCccccCccccc
Confidence 9 99999999999988777654 889999999974
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2.2e-46 Score=408.53 Aligned_cols=386 Identities=19% Similarity=0.156 Sum_probs=305.0
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
++++++|+++ |+++||++|+++.+. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 2 ~ti~~~l~~~-a~~~pd~~al~~~~~----~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (503)
T d3cw9a1 2 QTVNEMLRRA-ATRAPDHCALAVPAR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76 (503)
T ss_dssp CCHHHHHHHH-HHHSTTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHhCCCCeEEEECCC----CcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3589999999 999999999998642 37899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++||+|.++.+++++++++++++++|++.... ....... . .....++.+++...
T Consensus 77 ~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~----------~~~~~~~----~-~~~~~~i~~~~~~~------- 134 (503)
T d3cw9a1 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----------VADAIFQ----S-GSGARIIFLGDLVR------- 134 (503)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHH----------HHHHHHH----T-TCCCEEEEHHHHEE-------
T ss_pred hCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchH----------HHHHHhh----h-ccccccccchhhhh-------
Confidence 999999999999999999999999999999876531 1111111 1 23333443332110
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhc--CCCCCcEEEEeCC
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF--DYKPSDVYWCTAD 437 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~~d~~l~~~~ 437 (635)
+................++++++|+|||||||.||+|+++|+++..+..... ..+ .....++++..+|
T Consensus 135 ---------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p 204 (503)
T d3cw9a1 135 ---------DGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS-TQVGLRHGRHNVVLGLMP 204 (503)
T ss_dssp ---------TTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHH-HTSCCCSSTTCEEEECSC
T ss_pred ---------hhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhcc-ccccccccccccccccCc
Confidence 0000011222333456789999999999999999999999999766554433 333 3455689999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEec
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (635)
+.|..+.....+.+...++++++.+. +++..+...+.+++++++..+|+.+..++...........+++||.+++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~g 280 (503)
T d3cw9a1 205 LYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280 (503)
T ss_dssp TTSHHHHHTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEEC
T ss_pred cccccccccccccccccccccccccc----cChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEec
Confidence 98887766666777788888888765 59999999999999999999999998887654433445667899999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEE
Q 006688 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCI 597 (635)
Q Consensus 518 Ge~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i 597 (635)
||++++++..++...++ ..+.+.||.||++..+....... ....+.+.+.+.....+.+..++.++.|+.|++.+
T Consensus 281 G~~~~~~~~~~~~~~~~---~~~~~~yg~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~ 355 (503)
T d3cw9a1 281 GATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLYMRQPKT--GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355 (503)
T ss_dssp SSCCCHHHHHHHHHHCC---SEEEEEEEETTTEEEEEEESCSS--SSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEE
T ss_pred ccccccccccccccccc---ccccccccccccceeeeeccccc--cccccccccccceeeeeecccCcccCCCccccccc
Confidence 99999999999999887 67999999999987765543322 33345566666666777778999999999999999
Q ss_pred ecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 598 ~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
.+. +....||+++++.+.+.|. +|||+|||+|++
T Consensus 356 ~~~-~~~~~~~~~~~~~t~~~~~---~g~~~TgD~g~~ 389 (503)
T d3cw9a1 356 AAS-DSAFVGYLNQPQATAEKLQ---DGWYRTSDVAVW 389 (503)
T ss_dssp ECC-TTSCCCBTTCHHHHHHHEE---TTEEEEEEEEEE
T ss_pred ccc-ccccccccCChhhhHHHhc---CCceeccccccc
Confidence 874 5667889999999988763 799999999985
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=93.74 E-value=0.0014 Score=61.46 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=48.3
Q ss_pred Ccccchhhhhhcc--cCCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHh
Q 006688 105 GKISRLNAVILGE--ALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIAS 165 (635)
Q Consensus 105 ~~~~L~~~v~~~~--~~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~ 165 (635)
..+||.|.|...+ .+.+. +.|++++|+++++.+++++|..+|++++++|++++.+++.
T Consensus 184 ~~~dl~l~v~~~~~~~l~l~---~~y~~~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l~~ 243 (250)
T d1l5aa2 184 SAEGINFTFRGSPQHELCLD---ITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVAR 243 (250)
T ss_dssp CCCSEEEEEEECTTSCEEEE---EEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHH
T ss_pred ceeeEEEEEEEcCCceEEEE---EEEehhhCCHHHHHHHHHHHHHHHHHHHhCcCcccchhhh
Confidence 3456666665543 35666 9999999999999999999999999999999999999853
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=86.07 E-value=1.3 Score=44.95 Aligned_cols=114 Identities=9% Similarity=0.110 Sum_probs=81.2
Q ss_pred EEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCC
Q 006688 392 LLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468 (635)
Q Consensus 392 Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~ 468 (635)
+.++.+.++ +.+|++.+.... ...+. ..+++++|++..+++-+... +..+++++..|+..+..+.. .
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~-~~Gi~~Gd~Vai~~~ns~e~--~v~~lA~~~~G~i~vpl~~~---~ 106 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDI---Y 106 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCSST--HHHHHHHHHHTCEEEECCTT---C
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHH-HcCcCCCCEEEEEeCCCHHH--HHHHHHHHHhCeEEEecCCC---C
Confidence 344555444 457888754433 23333 47899999999888876544 56778999999999888653 4
Q ss_pred ChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCC
Q 006688 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (635)
Q Consensus 469 d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (635)
..+++...++..++++++.....+..+.+... .++.++.+++.....
T Consensus 107 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 153 (541)
T d1lcia_ 107 NERELLNSMNISQPTVVFVSKKGLQKILNVQK------KLPIIQKIIIMDSKT 153 (541)
T ss_dssp CHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH------HCTTCCEEEETTCSS
T ss_pred CHHHHHHHHHhccceEEeeeccccccchhccc------cccccceeeeecCCc
Confidence 88999999999999999999988877765421 346677777655443
|