Citrus Sinensis ID: 006795

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

MAMPEKMQQLPADDPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRSFDHHHHHHHQQQHHLNRTKRSAFVKKDFHNNNNNNNHAFDSNSSAFDDKKDVVMKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKLTPTDGQRLASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPEMGSQAEKENGSGKSNHETNASKEKLVGETQGQGCNGSVDGTGSVKAVMKEENQHQSVEDTSVAGKDS

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEccEEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEccccEEEEccccHHHcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccc

ccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccHHccccccccccccccEEEEEEEcccEEEEEcHHEHHcccccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEEcEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEcEEEEEccccccccEEEEEccccEEEEEEcccHHHHHHccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEcccc

mampekmqqlpaddpfvmWLRGEFAAANAIIDTLCHHLrvigepgeydfAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKqqrsfdhhhhhhhqqqhhlnrtkrsafvkkdfhnnnnnnnhafdsnssafddkkdvvmkahddgsakslgnseitqvgdaepkaealddgctpglkendsqsvqSQNEKQNQSMAAKSFvgtemvdgkmvnvVDGLKLYEEVSGNSEVSKLVSLVNDLRtagkrgqiqgpayvvskrpirghgreviqlglpivdgppedeiaggtsrdrriepipSLLQDVIDRLVGLQimtvkpdscivdvfnegdhsqphispswfgrpvcILFLTecdmtfgrmigidhpgdyrgtlrlsvapgsllvmqGKSADIAKHAISSIRKQRILVTFtksqpkkltptdgqrlaspgiapsphwgpppgrppnhirhptgpkhfapipttgvlpapairaqipptngvppifvsppvtpampfpapvpippgstgwtaapprhtpppppprlpvpgtgvflpppgsggsssprqvssaatehlipemgsqaekengsgksnhetnaskeklvgetqgqgcngsvdgtGSVKAVMKEEnqhqsvedtsvagkds

mampekmqqlpaDDPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRSFDHHHHhhhqqqhhlnrTKRSAFVKKDFHNNnnnnnhafdsnssafDDKKDVVMKAHDdgsakslgnseitqvGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEvsgnsevskLVSLVNDLRtagkrgqiqgpayvvskrpirgHGREVIQlglpivdgppedeiaggtsrdrriepiPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAIssirkqrilvtftksqpkkltptdgqrlASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPEMgsqaekengsgksnHETNASKEKlvgetqgqgcngsVDGTGSVKAVMKeenqhqsvedtsvagkds

MAMPEKMQQLPADDPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRSFDhhhhhhhqqqhhLNRTKRSAFVKKdfhnnnnnnnhafdsnssafDDKKDVVMKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKLTPTDGQRLASpgiapsphwgpppgrppnhirhpTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSppvtpampfpapvpippGSTGWTAApprhtpppppprlpvpgtgvFLpppgsggssspRQVSSAATEHLIPEMGSQAEKENGSGKSNHETNASKEKLVGETQGQGCNGSVDGTGSVKAVMKEENQHQSVEDTSVAGKDS

**************PFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWR***********************************************************************************************************************FVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVD*****************EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTF******************************************************VL***AI************IF*********************************************************************************************************************************************

*********LPADDPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAW*************************************************************************************************************************VGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGP**************IEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDH***YR**LRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTF******************************************************V***********************PV****************************************************************************************************************************************

*********LPADDPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVA************************TKRSAFVKKDFHNNNNNNNHAFDSNSSAFDDKKDVVMKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGL********************AKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQP***********ASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPP*****************EHLIPEMG****************NASKEKLVGETQGQGCNGSVDGTGSVKAVMK******************

*AMPEKMQQLPADDPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQ*************************************************************************************************************QSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQP************S*GIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPPP*****************************************************************************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		630
225424456		698	PREDICTED: uncharacterized protein LOC10	0.961	0.868	0.595	0.0
255573240		697	conserved hypothetical protein [Ricinus	0.953	0.862	0.593	0.0
297737584		672	unnamed protein product [Vitis vinifera]	0.898	0.842	0.602	0.0
118487131		694	unknown [Populus trichocarpa]	0.963	0.874	0.56	0.0
147790116		1145	hypothetical protein VITISV_002198 [Viti	0.947	0.521	0.569	1e-178
449449076		684	PREDICTED: uncharacterized protein LOC10	0.920	0.847	0.538	1e-178
356510841		681	PREDICTED: uncharacterized protein LOC10	0.936	0.866	0.540	1e-172
356519405		650	PREDICTED: uncharacterized protein LOC10	0.9	0.872	0.516	1e-170
356528192		677	PREDICTED: uncharacterized protein LOC10	0.911	0.847	0.531	1e-170
224099599		630	predicted protein [Populus trichocarpa]	0.868	0.868	0.547	1e-164

>gi\|225424456\|ref\|XP_002281644.1\| PREDICTED: uncharacterized protein LOC100252594 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/660 (59%), Positives = 468/660 (70%), Gaps = 54/660 (8%)

Query: 14  DPFVMWLRGEFAAANAIIDTLCHHLRVIGEPGEYDFAINCIQQRRCNWNSVLHLQQYFSV 73
           D F+ WLRGEFAAANAIID+LC+HLR+IGEPGEYD  I CIQQRR NW+SVLH+QQYFSV
Sbjct: 43  DGFISWLRGEFAAANAIIDSLCNHLRLIGEPGEYDAVIGCIQQRRYNWSSVLHMQQYFSV 102

Query: 74  SEVMLALQQVAWRKQQRSFD--HHHHHHHQQQHHLNRTKRSAFVKKDFHNNNNNNNHAFD 131
           +EV+ ALQQV WR+QQR  D        +++     R  +     KD HN+N  N H+ D
Sbjct: 103 AEVIYALQQVGWRRQQRHLDPVKGAGKEYKRYGVAYRQGQRGETAKDSHNSNFEN-HSHD 161

Query: 132 SNSSA-----------FDD-----KKDVVMKAHD---------------------DGSAK 154
           +NSS            +DD     K DVV K  D                     +  +K
Sbjct: 162 ANSSGTLEKGERVSEIYDDVKGGDKGDVVGKLEDKDLAAAEEKKAGTDAVAKPNANSCSK 221

Query: 155 SLGNSEITQVGDAEPKAEALDDGCTPGL-KENDSQSVQSQNEKQNQSMAAKSFVGTEMVD 213
           S  NSE ++ G +E +A  +DDG +  +  EN++  VQ+QNEK N + + K+FVGTE+ D
Sbjct: 222 SSENSEGSRCGISETEANDMDDGGSCNMIMENNAHPVQNQNEKPNPTTSPKTFVGTEIFD 281

Query: 214 GKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREV 273
           GK VNVVDGLKLYEE+  +SEVSK VSLVNDLR AGKRGQ+QG  +VVSKRP++GHGRE+
Sbjct: 282 GKAVNVVDGLKLYEELFDDSEVSKFVSLVNDLRAAGKRGQLQGQTFVVSKRPMKGHGREM 341

Query: 274 IQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNE 333
           IQLG+PI D P EDE   GTS+DRR E IPSLLQDVI  LVG Q++TVKPD+CI+D +NE
Sbjct: 342 IQLGVPIADAPLEDESVVGTSKDRRTESIPSLLQDVIGHLVGSQVLTVKPDACIIDFYNE 401

Query: 334 GDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGK 393
           GDHSQPHI P+WFGRPVCILFLTECDMTFGR+IG DHPGDYRG+L+LS+ PGSLLVMQGK
Sbjct: 402 GDHSQPHIWPTWFGRPVCILFLTECDMTFGRVIGADHPGDYRGSLKLSLVPGSLLVMQGK 461

Query: 394 SADIAKHAISSIRKQRILVTFTKSQPKKLTPTDGQRLASPGIAPSPHWGPPPGRPPNHIR 453
           SAD AKHAI S+RKQRILVTFTKSQPKK   +DGQRL  P  A S HW PPP R PNH+R
Sbjct: 462 SADFAKHAIPSLRKQRILVTFTKSQPKKTMASDGQRLLPPA-AQSSHWVPPPSRSPNHMR 520

Query: 454 HPTGPKHFAPIPTTGVLPAPA--IRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGST 511
           HP GPKH+  +PTTGVLPAPA  +R Q+PP NG+ P+FV+  V PAMPFPAPVP+P GS 
Sbjct: 521 HPMGPKHYGAVPTTGVLPAPAPPMRPQLPPPNGMQPLFVTTAVAPAMPFPAPVPLPTGSP 580

Query: 512 GWTAAPPRHTPPPPPPRLPVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPEMGSQAEKE 571
           GW AAPPRH     PPRLPVPGTGVFLPPPGSG SSSP+ +S+ AT   + E  +  EKE
Sbjct: 581 GWPAAPPRHP----PPRLPVPGTGVFLPPPGSGNSSSPQHISTEATSTSV-ETAAPTEKE 635

Query: 572 --NGSGKSNHETNASKEKLVGETQGQGCNGSVDGTG-SVKAVMKEENQHQSVEDTSVAGK 628
             +G   SN  T + K KL G+   Q CNGS+D TG   +AV KEE QH   ++  VA K
Sbjct: 636 NGSGKSSSNSNTVSPKGKLDGKVHRQECNGSMDETGVDERAVTKEEQQHN--DELKVASK 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255573240\|ref\|XP_002527549.1\| conserved hypothetical protein [Ricinus communis] gi\|223533099\|gb\|EEF34858.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297737584\|emb\|CBI26785.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|118487131\|gb\|ABK95394.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147790116\|emb\|CAN65462.1\| hypothetical protein VITISV_002198 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449449076\|ref\|XP_004142291.1\| PREDICTED: uncharacterized protein LOC101210274 [Cucumis sativus] gi\|449481289\|ref\|XP_004156139.1\| PREDICTED: uncharacterized LOC101210274 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356510841\|ref\|XP_003524142.1\| PREDICTED: uncharacterized protein LOC100809865 [Glycine max]	Back alignment and taxonomy information

>gi\|356519405\|ref\|XP_003528363.1\| PREDICTED: uncharacterized protein LOC100781773 [Glycine max]	Back alignment and taxonomy information

>gi\|356528192\|ref\|XP_003532689.1\| PREDICTED: uncharacterized protein LOC100794176 [Glycine max]	Back alignment and taxonomy information

>gi\|224099599\|ref\|XP_002311547.1\| predicted protein [Populus trichocarpa] gi\|222851367\|gb\|EEE88914.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		630
TAIR\|locus:2006717		601	AT1G14710 "AT1G14710" [Arabido	0.442	0.464	0.533	7.2e-107
TAIR\|locus:2139345		569	AT4G02940 [Arabidopsis thalian	0.415	0.460	0.362	3.7e-62
TAIR\|locus:2066385		438	AT2G48080 [Arabidopsis thalian	0.382	0.550	0.362	6.1e-58
TAIR\|locus:2060964		507	AT2G17970 [Arabidopsis thalian	0.376	0.467	0.346	2.7e-36
TAIR\|locus:2135124		520	AT4G36090 [Arabidopsis thalian	0.346	0.419	0.348	1e-32
TAIR\|locus:2028486		331	AT1G48980 [Arabidopsis thalian	0.336	0.640	0.328	5.4e-29

TAIR\|locus:2006717 AT1G14710 "AT1G14710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 769 (275.8 bits), Expect = 7.2e-107, Sum P(3) = 7.2e-107
 Identities = 153/287 (53%), Positives = 214/287 (74%)

Query:   138 DDKKDVVMKAHDDGSAKSLGNSEITQ-VGDAEPKAEALDDG-CTPGLKEND--SQSVQSQ 193
             D K   V +   DGS K   +S++ + + ++E + E + +  C  G K+N   S+  Q +
Sbjct:   172 DVKALSVAEEKRDGSEKPRSDSKVEKKLEESETQEEIVKNHKCNSGSKDNSLISEQKQEE 231

Query:   194 NEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQ 253
             N+K+  +  AK+FV  EM D KMVNVV+GLKLY+++   +EVS+LVSLV +LR AG+RGQ
Sbjct:   232 NDKECPASMAKTFVVQEMYDAKMVNVVEGLKLYDKMLDANEVSQLVSLVTNLRLAGRRGQ 291

Query:   254 IQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRL 313
             +Q  AYV  KRP RGHGRE+IQLGLPI D PP+D+    + +DRRIEPIPS L D+I+RL
Sbjct:   292 LQSEAYVGYKRPNRGHGREMIQLGLPIADTPPDDD----SIKDRRIEPIPSALSDIIERL 347

Query:   314 VGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGD 373
             V  QI+ VKPD+CI+D F+EGDHSQPH+   WFGRP+ +L L+ECD TFGR+I  ++PGD
Sbjct:   348 VSKQIIPVKPDACIIDFFSEGDHSQPHMFVPWFGRPISVLSLSECDYTFGRVIVSENPGD 407

Query:   374 YRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPK 420
             Y+G+L+LS+ PGS+L+++GKSA++AK+AI + RKQRIL++F KS+P+
Sbjct:   408 YKGSLKLSLTPGSVLLVEGKSANLAKYAIHATRKQRILISFIKSKPR 454

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2139345 AT4G02940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066385 AT2G48080 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060964 AT2G17970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135124 AT4G36090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028486 AT1G48980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030641001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (641 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		630
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
pfam13532		190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	3e-05
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-05
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-05
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-04
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	5e-04
pfam05518		753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
pfam04652		315	pfam04652, DUF605, Vta1 like	0.001
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK07003		830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
pfam04652		315	pfam04652, DUF605, Vta1 like	0.003
PHA03132		580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
pfam04652		315	pfam04652, DUF605, Vta1 like	0.004
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.004
PHA02682		280	PHA02682, PHA02682, ORF080 virion core protein; Pr	0.004
PRK14954		620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

 Score = 51.5 bits (123), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 443  PPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPF-P 501
            PPP   P    H        P       P PA   Q  P     P   + P  PA P  P
Sbjct: 2702 PPPPPTPEPAPHALVSATPLP-------PGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754

Query: 502  APVPIPPGSTG-WTAAPPRHTPPPPPPRLPVP 532
            A    PP + G    APP      PP RL  P
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Length = 3151

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218621 pfam05518, Totivirus_coat, Totivirus coat protein	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|222997 PHA03132, PHA03132, thymidine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		630
KOG4176		323	consensus Uncharacterized conserved protein [Funct	100.0
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.97
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.96
KOG3200		224	consensus Uncharacterized conserved protein [Funct	99.94
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.91
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.86
KOG3959		306	consensus 2-Oxoglutarate- and iron-dependent dioxy	99.79
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	97.68
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	97.59
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	97.53
KOG2731		378	consensus DNA alkylation damage repair protein [RN	97.07
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	95.47
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	93.63
PLN00052		310	prolyl 4-hydroxylase; Provisional	93.42
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	92.93
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	92.7
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	88.68
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	83.07

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=8.1e-42  Score=356.13  Aligned_cols=301  Identities=34%  Similarity=0.491  Sum_probs=254.2

Q ss_pred             CchhHHHHHHhhhccccchhhhccccchHHHHHHHHHHHHHHhhccccCCCCCCCcccccccccccccccccccccccCC
Q 006795           45 GEYDFAINCIQQRRCNWNSVLHLQQYFSVSEVMLALQQVAWRKQQRSFDHHHHHHHQQQHHLNRTKRSAFVKKDFHNNNN  124 (630)
Q Consensus        45 ~eyd~v~~~~~~rr~~w~~vl~mq~~~sv~dv~~~Lqqv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (630)
                      -||+.|...|||||+||.+++.|+.+.+.+.|+.++|.++-+.......                        +.+    
T Consensus         7 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~------------------------~~~----   58 (323)
T KOG4176|consen    7 YEYAKVAKKIHRRRLNSSDVLVQSSRESTSYLAVANQGLAAGLAEAALL------------------------VDA----   58 (323)
T ss_pred             ccHHHHHHHHHhhhcccCCcceecccCCcHHHHhhccchhhhhhhhhhh------------------------ccc----
Confidence            6899999999999999999999999999999999999998774221100                        000    


Q ss_pred             CCCCcCCCCCCCCCCcccccccccCCCCcccCCCccccccCCCCcccccccCCCCCCCCcCCcchhhchhcccccccccc
Q 006795          125 NNNHAFDSNSSAFDDKKDVVMKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAK  204 (630)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~k  204 (630)
                                              ++    +..++.++..|++.    .....|+       .+-.+.+..+.+-....|
T Consensus        59 ------------------------~~----~~~~~~~~~~~s~~----~~~~~~~-------~e~~~~~~~~~~~~~~i~   99 (323)
T KOG4176|consen   59 ------------------------ED----GEVDSGIMSPGSED----SLFRELY-------SEESRLRYRTDANLKAIK   99 (323)
T ss_pred             ------------------------cc----cccccccccCCccc----chhhhhc-------hhhhhhhhhhhccccccc
Confidence                                    00    11122223333321    0111222       222222233456678999


Q ss_pred             ceeeecccCCcccccCCceEEecCCCCHHHHHHHHHHHHhhhhcCCceeecCceEEecCCcccCCCceeEecCCcccCCC
Q 006795          205 SFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGP  284 (630)
Q Consensus       205 ~f~~~E~vdg~~VNvVpGL~l~pdFLS~eEe~kLLs~I~EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G~~Y~Ys~  284 (630)
                      .|.+.|.++++.+|+++|++++.+.+++.|...|.+++.++..+++++.+.+.++..   |++|++|+++|||++|.|.+
T Consensus       100 ~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G~~f~y~~  176 (323)
T KOG4176|consen  100 GFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLGYPFDYRT  176 (323)
T ss_pred             cccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecCceeccCC
Confidence            999999999999999999999999999999999999999999999999999988887   78899999999999999998


Q ss_pred             CCcccCCCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-Cceeeeee
Q 006795          285 PEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFG  363 (630)
Q Consensus       285 ~e~~n~~gi~~~~~vePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGdgI~PHvD~p~FG~PIvsLSL-SecvM~Fg  363 (630)
                      ...++.+      ..+|||..++.|++||+.+++++.+||+|+||+|++|++|.||+|+++|++||++||| |+|+|.|+
T Consensus       177 ~~~d~~~------~~~piPs~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~Fg  250 (323)
T KOG4176|consen  177 NNVDESK------PVDPIPSLFKSIIDRLVSWRVIPERPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTMEFG  250 (323)
T ss_pred             CcccccC------ccCCCchHHHHHHHHhhhhccCCCCCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEEec
Confidence            7665542      2799999999999999999999999999999999999999999999999999999987 99999999


Q ss_pred             eccCCCCCCCCcceEEEEecCCcEEEecccccccccccccCCCCCeEEEEeeeccCCC
Q 006795          364 RMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKK  421 (630)
Q Consensus       364 r~~~~d~~gd~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~r~rRISLTFRrV~p~~  421 (630)
                      |.+..++.+++++.+.++|..||+|||.|.+.+..+|+++..+..|||||||++++..
T Consensus       251 ~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~  308 (323)
T KOG4176|consen  251 HGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDP  308 (323)
T ss_pred             ccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCC
Confidence            9999888999999999999999999999999999999999999999999999999976

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		630
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	3e-10
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	4e-08
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-07
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-06
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-06
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-05
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-06
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1deq_A		390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A		390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.0 bits (165), Expect = 6e-12
 Identities = 76/483 (15%), Positives = 125/483 (25%), Gaps = 139/483 (28%)

Query: 95  HHHHHH------QQQHHLN---RTKRSAFVKKDFHNNNNNNNHAFDSNSSAFDDK--KDV 143
           HHHHHH      + Q+           AFV  +F     +     D   S    +    +
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVD-NF-----DCKDVQDMPKSILSKEEIDHI 54

Query: 144 VMKAHDDGSAKSL------GNSEITQ--VGDAEPKAEALDDGCTPGLKENDSQSVQS-QN 194
           +M          L         E+ Q  V +               L+ N    +   + 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--------------LRINYKFLMSPIKT 100

Query: 195 EKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQI 254
           E++  SM  + ++  E  D ++ N       Y        VS+L      LR A    ++
Sbjct: 101 EQRQPSMMTRMYI--EQRD-RLYNDNQVFAKYN-------VSRL-QPYLKLRQALL--EL 147

Query: 255 QGPAYVV------------------SKRPIRGHGREV--IQLGLPIVDGPPEDEIA---- 290
           +    V+                  S +       ++  + L        PE  +     
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQK 204

Query: 291 -------GGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIV--DVFNEGDHSQPHI 341
                    TSR      I   +  +   L  L       +  +V  +V N         
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-----AW 259

Query: 342 SPSWFGRPVC-ILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI-AK 399
           +        C IL  T       R   +        T  +S+   S+ +   +   +  K
Sbjct: 260 NAFNLS---CKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 400 HAISSIRKQRILVTFTKSQPKKLTPTDGQRLASPGIAPSPHWGPPPGRPPNHIRHPTGPK 459
                 R Q +       +     P          IA S           ++ +H    K
Sbjct: 310 --YLDCRPQDL-----PREVLTTNP-----RRLSIIAESIR--DGLAT-WDNWKHVNCDK 354

Query: 460 HFAPIPTT-GVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPG--STGWTAA 516
               I ++  VL     R            F    V     FP    IP    S  W   
Sbjct: 355 LTTIIESSLNVLEPAEYRKM----------FDRLSV-----FPPSAHIPTILLSLIWFDV 399

Query: 517 PPR 519
              
Sbjct: 400 IKS 402

PyMOL of 1vt4

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		630
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	100.0
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	100.0
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	99.98
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.97
3lfm_A		495	Protein FTO; FAT MASS and obesity associated (FTO)	98.2
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	97.12
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	97.11
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	96.61
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	95.64
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	89.91
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	88.11
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	84.94

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

Probab=100.00  E-value=2.5e-34  Score=287.18  Aligned_cols=184  Identities=16%  Similarity=0.228  Sum_probs=149.6

Q ss_pred             cCCceEEecCCCCHHHHHHHHHHHH-hhhhcCCceeecCceEEecCCcccCCCceeEecC-CcccCCCCCcccCCCCCCC
Q 006795          219 VVDGLKLYEEVSGNSEVSKLVSLVN-DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLG-LPIVDGPPEDEIAGGTSRD  296 (630)
Q Consensus       219 vVpGL~l~pdFLS~eEe~kLLs~I~-EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G-~~Y~Ys~~e~~n~~gi~~~  296 (630)
                      .++||.|+++||+.+|+++||+.|. +++|......+||+.+..+|+        +.+|| +.|.|+...         .
T Consensus        38 ~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~~R~--------~~~~g~~~Y~Ys~~~---------~  100 (238)
T 2iuw_A           38 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRL--------TAWYGELPYTYSRIT---------M  100 (238)
T ss_dssp             SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSE--------EEEEECCCTTSCHHH---------H
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCcccccCCe--------eEEcCCCccccCCcc---------c
Confidence            3678999999999999999999984 789999888999998887755        56777 678886211         1


Q ss_pred             CCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCC-CCCCCCCC-CCCC--CCEEEEEc-CceeeeeeeccCCCCC
Q 006795          297 RRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGD-HSQPHISP-SWFG--RPVCILFL-TECDMTFGRMIGIDHP  371 (630)
Q Consensus       297 ~~vePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pGd-gI~PHvD~-p~FG--~PIvsLSL-SecvM~Fgr~~~~d~~  371 (630)
                      ....+||++|..|++++.+  +.+..||+||||+|++|+ +|+||+|. ..|+  .+|++||| ++|+|.|+++...+..
T Consensus       101 ~~~p~wp~~l~~l~~~~~~--~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~~~~~  178 (238)
T 2iuw_A          101 EPNPHWHPVLRTLKNRIEE--NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEEN  178 (238)
T ss_dssp             CCBSSCCHHHHHHHHHHHH--HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC----
T ss_pred             CCCCCCCHHHHHHHHHHHH--HhCCCCCEEEEEEECCCCCceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCCcccc
Confidence            2235899999999988753  346899999999999996 99999976 4677  79999999 9999999987532211


Q ss_pred             CC--CcceEEEEecCCcEEEecccccccccccccCC---CCCeEEEEeeeccCCC
Q 006795          372 GD--YRGTLRLSVAPGSLLVMQGKSADIAKHAISSI---RKQRILVTFTKSQPKK  421 (630)
Q Consensus       372 gd--~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk~---r~rRISLTFRrV~p~~  421 (630)
                      ++  ....++|.|++||||||.|++|+.|+|+|++.   +..|||||||++.+..
T Consensus       179 ~~~~~~~~~~i~L~~gsllvM~G~~r~~w~H~I~~~~~~~~~RIsLTfR~v~~~~  233 (238)
T 2iuw_A          179 GDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDP  233 (238)
T ss_dssp             ----CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC--
T ss_pred             CcccCCceEEEEcCCCCEEEEChhhhCccEecCCCcCCCCCCEEEEEeeeccccc
Confidence            21  13579999999999999999999999999996   8999999999998754

PyMOL of 2iuw

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		630
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	5e-08
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	1e-05

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 17/128 (13%)

Query: 301 PIPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISPS--WFGRPVCILFLTE 357
            +P    ++  R          +PD+C+++ +  G     H          P+       
Sbjct: 77  AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVS----- 131

Query: 358 CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRK--------QR 409
             +    +             RL +  G ++V  G+S  +  H I  ++          R
Sbjct: 132 VSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGES-RLFYHGIQPLKAGFHPLTIDCR 190

Query: 410 ILVTFTKS 417
             +TF ++
Sbjct: 191 YNLTFRQA 198

PyMOL of d2fdia1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		630
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.97
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.96
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	95.71
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	87.96

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-32  Score=263.38  Aligned_cols=182  Identities=16%  Similarity=0.231  Sum_probs=143.6

Q ss_pred             cCCceEEecCCCCHHHHHHHHHHHH-hhhhcCCceeecCceEEecCCcccCCCceeEecC-CcccCCCCCcccCCCCCCC
Q 006795          219 VVDGLKLYEEVSGNSEVSKLVSLVN-DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLG-LPIVDGPPEDEIAGGTSRD  296 (630)
Q Consensus       219 vVpGL~l~pdFLS~eEe~kLLs~I~-EL~~sgRR~qlyG~ty~v~Rr~~kg~gReviq~G-~~Y~Ys~~e~~n~~gi~~~  296 (630)
                      -++||.|++|||+++|++.|++.|. ++.|.......+|+.+..+|+..        .+| +.|.|+..         ..
T Consensus        17 g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~--------~~~d~~y~y~~~---------~~   79 (210)
T d2iuwa1          17 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTA--------WYGELPYTYSRI---------TM   79 (210)
T ss_dssp             SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEE--------EEECCCTTSCHH---------HH
T ss_pred             CcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeE--------EecCcCcccccc---------cc
Confidence            4568999999999999999999875 78899999999999888887632        232 45555411         12


Q ss_pred             CCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCC-CCCCCCCCCC-CCC--CCEEEEEc-CceeeeeeeccCCCCC
Q 006795          297 RRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEG-DHSQPHISPS-WFG--RPVCILFL-TECDMTFGRMIGIDHP  371 (630)
Q Consensus       297 ~~vePIP~~Lq~LidRLv~~~ll~~~PNqcLIN~Y~pG-dgI~PHvD~p-~FG--~PIvsLSL-SecvM~Fgr~~~~d~~  371 (630)
                      ....+||++|..|.+++.+  .....+|+|+||+|.+| ++|+||+|.. .|+  .+|++||| ++|+|.|+++......
T Consensus        80 ~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~  157 (210)
T d2iuwa1          80 EPNPHWHPVLRTLKNRIEE--NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEEN  157 (210)
T ss_dssp             CCBSSCCHHHHHHHHHHHH--HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC----
T ss_pred             ccCCCCcHHHHHHHHhhhh--hcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccC
Confidence            3457899999999999864  34678999999999776 7899999764 464  47889999 9999999876542222


Q ss_pred             C--CCcceEEEEecCCcEEEecccccccccccccC---CCCCeEEEEeeeccC
Q 006795          372 G--DYRGTLRLSVAPGSLLVMQGKSADIAKHAISS---IRKQRILVTFTKSQP  419 (630)
Q Consensus       372 g--d~~~~~~L~Lp~GSLLVMsGeAR~~WkHgIpk---~r~rRISLTFRrV~p  419 (630)
                      +  .....++|.|++||||||.|++|+.|+|+|++   .+++|||||||+++|
T Consensus       158 ~~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         158 GDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP  210 (210)
T ss_dssp             ----CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred             CccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence            1  12357999999999999999999999999997   467999999999986

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure