Citrus Sinensis ID: 006823

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
MEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
cccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccEEHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHccccccHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHHHHHcc
mefgahegqlnsQFASAQIstnqgagpapalikaevpwsarrgnlsekDRVLKTVKGILNkltpekfdvlkgqlidsgittpDILKGVIELIFDKavleptfcPMYALLCSdlneklppfpsdepggkditfKRILLNHCQEAFEGADNTRAEIRQmtapeqemERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLendgktcpaeeNVEAICQFFNTIgkqldenpksrrvnDVYFSRLKelttnsqlvprlRFMIHDVldlrannwvprreEMKAKTITEIHSEAEknlglrpgatammrngrtgatggmgpggfpiarpgtggmmpgmpgtqkmpgmpgfdtdnwevprsrtmprgdskspsqfpgrvqspligkspsinskflpqgsggiisgktsallqgsptpsarpsgiasgvepltqytkpvapaasvvaspekpsapvtklNLADLRKKTVSLLEEYFSIRILDEALQCVEelraptyhpEVVKEAIALALekippcvePVIQLLEFLLNknvlttrdigTGCLLYGSLlddigidlpkapnnfgEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKsiqsspagQEVLAVQGAEVQACESLLT
mefgahegQLNSQFASAQISTNQGAGPAPALIKAEVpwsarrgnlsekdrvlKTVKGilnkltpekfdvlkgqlidsgitTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAfegadntraEIRQMtapeqemermDQERLVKLRTLGNIRLIGellkqkmvpEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTigkqldenpksrrVNDVYFSRLkelttnsqlvprlrFMIHDvldlrannwvprreEMKAKTITEihseaeknlglrpgATAMMRNGRtgatggmgpgGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRtmprgdskspsqfpGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAAsvvaspekpsapvtklnladLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
MEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAmmrngrtgatggmgpggFPIARpgtggmmpgmpgtqkmpgmpgFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTkpvapaasvvaspekpsapvTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
***********************************VPW**********DRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE*************DITFKRILLNHCQEAF***************************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLD*****RRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPR**********************************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAM****************************
*****************************************************TVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPP*******GKDITFKRILLNHCQEAFEGADN*********************RLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT***QLVPRLRFMIHDVLDLRANNW*****************************************************************************************************************************************************************************************DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMK*************VQGAEVQACESLLT
**********NSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRS*****************VQSPLIGKSPSINSKFLPQGSGGIISGKTSAL************GIASGVEPLTQYTKPVA**************PVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
*********************************************SEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQM***EQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNL**************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSP*GQEVLAV**AEVQAC*SLL*
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MEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query630 2.2.26 [Sep-21-2011]
Q03387788 Eukaryotic translation in N/A no 0.968 0.774 0.642 0.0
Q41583787 Eukaryotic translation in N/A no 0.968 0.775 0.639 0.0
Q84PB3793 Eukaryotic translation in yes no 0.961 0.764 0.649 0.0
Q93ZT6780 Eukaryotic translation in yes no 0.968 0.782 0.647 0.0
Q6K641780 Eukaryotic translation in no no 0.973 0.785 0.632 0.0
O82233747 Eukaryotic translation in no no 0.939 0.792 0.616 0.0
B9FXV51792 Eukaryotic translation in no no 0.814 0.286 0.336 2e-57
G5CEW61488 Eukaryotic translation in N/A no 0.466 0.197 0.386 2e-50
Q76E231727 Eukaryotic translation in no no 0.869 0.317 0.308 2e-49
Q5Z5Q3711 Zinc finger CCCH domain-c no no 0.282 0.250 0.528 6e-47
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function desciption
 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/633 (64%), Positives = 486/633 (76%), Gaps = 23/633 (3%)

Query: 8   GQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPE 65
           G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLKTVKGILNKLTPE
Sbjct: 165 GRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPE 224

Query: 66  KFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEP 125
           KFD+LKGQL+DSGITT DILK VI LIF+KAV EPTFCPMYA LCS+LN+ LP FPS+EP
Sbjct: 225 KFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNLPTFPSEEP 284

Query: 126 GGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIG 185
           GGK+ITFKR+LLN+CQEAFEGAD+ R EI  +T P+QEME+ D+ER+ KLRTLGNIRLIG
Sbjct: 285 GGKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIG 344

Query: 186 ELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDV 245
           ELLKQKMVPEKIVHHIV+ELL +D K CP EE+VEAICQFFNTIGKQLDENPKSRR+ND 
Sbjct: 345 ELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDT 404

Query: 246 YFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRP 305
           YF +++EL  N QL PR +FM+ D++DLR+NNWVPRR E+KAKTI+EIH+EAEKNLGLRP
Sbjct: 405 YFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAEIKAKTISEIHTEAEKNLGLRP 464

Query: 306 GATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRT 365
           GATA MRNGR    G + PGGF + RPGTGGMMPGMPG++KMPGMPG D DNWEV RSR+
Sbjct: 465 GATANMRNGRNAPGGPLSPGGFSVNRPGTGGMMPGMPGSRKMPGMPGLDNDNWEVQRSRS 524

Query: 366 MPRGDSKSPSQFPGRVQSPLIGKSPSINS------KFLPQGSGGIISGKTSALLQGSPTP 419
           MPRGD       P R Q PLI K PSIN       + LPQG+G +I GK SALL G+  P
Sbjct: 525 MPRGD-------PLRNQGPLINKVPSINKPSPINPRLLPQGTGALI-GK-SALL-GTGGP 574

Query: 420 SARPSGIASGVEPLTQYT----KPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEE 475
            +RPS + +   PL   T    KP +   + V  P+K +A   K+  A L+KKT SLLEE
Sbjct: 575 PSRPSSLTASPTPLPAQTTASPKPSSATPASVPIPDK-AASSAKVIPAGLQKKTASLLEE 633

Query: 476 YFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTT 535
           YF IRILDEA QC+EEL++P YHPE+VKEAI LAL+K    V+P+++LLE L  K    T
Sbjct: 634 YFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHLYTKKTFKT 693

Query: 536 RDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRR 595
            D+  GCLLYGSLL+DIGIDLPKAP  FGE+V +L+++  L F   + +LK +ED  FR+
Sbjct: 694 EDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLILSCGLRFEAAEGILKAMEDTFFRK 753

Query: 596 SIFTAAMKSIQSSPAGQEVLAVQGAEVQACESL 628
           +IFT+  K++ + PAGQ +L+   A V AC SL
Sbjct: 754 AIFTSVTKTLGADPAGQAILSSHAAVVDACNSL 786
Functions in close association with EIF4B and EIF4A in ATP-dependent RNA-unwinding.
Triticum aestivum (taxid: 4565)
>sp|Q41583|IF4G2_WHEAT Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function description
>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1 Back     alignment and function description
>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2 Back     alignment and function description
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
224143334 750 predicted protein [Populus trichocarpa] 0.993 0.834 0.794 0.0
359484894 795 PREDICTED: eukaryotic initiation factor 0.990 0.784 0.751 0.0
147833057 794 hypothetical protein VITISV_013807 [Viti 0.988 0.784 0.752 0.0
359484892 794 PREDICTED: eukaryotic initiation factor 0.988 0.784 0.751 0.0
359475890 791 PREDICTED: eukaryotic initiation factor 0.993 0.791 0.765 0.0
356562557 792 PREDICTED: eukaryotic initiation factor 0.992 0.789 0.716 0.0
356562555 789 PREDICTED: eukaryotic initiation factor 0.992 0.792 0.716 0.0
224092613 766 predicted protein [Populus trichocarpa] 0.995 0.818 0.774 0.0
356500679 789 PREDICTED: eukaryotic initiation factor 0.988 0.789 0.724 0.0
309296913 801 eukaryotic initiation factor iso4G [Cari 0.985 0.775 0.730 0.0
>gi|224143334|ref|XP_002324920.1| predicted protein [Populus trichocarpa] gi|222866354|gb|EEF03485.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/629 (79%), Positives = 553/629 (87%), Gaps = 3/629 (0%)

Query: 2   EFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNK 61
           EF   + QLNSQFASAQI+ NQ  GPAPALIKAEVPWS RRGNLSE++RVLKTVKGILNK
Sbjct: 125 EFYNRQDQLNSQFASAQITANQRVGPAPALIKAEVPWSVRRGNLSEEERVLKTVKGILNK 184

Query: 62  LTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFP 121
           LTPEKFDVLKGQLIDSGITTPDILKGVI LIFDKAVLEPTFCPMYALLCSDLNEKLPPFP
Sbjct: 185 LTPEKFDVLKGQLIDSGITTPDILKGVISLIFDKAVLEPTFCPMYALLCSDLNEKLPPFP 244

Query: 122 SDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNI 181
           SDEPGGK+ITFKRILLN+CQEAFEGA N RAEI ++TAPEQEMER D+ERLVKLRT+GN+
Sbjct: 245 SDEPGGKEITFKRILLNNCQEAFEGAGNLRAEISKLTAPEQEMERRDKERLVKLRTMGNM 304

Query: 182 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRR 241
           RLIGELLKQKMVPEKIVHHIVQELL ND KTCPAEENVEAICQFFNTIGKQLDENPK+RR
Sbjct: 305 RLIGELLKQKMVPEKIVHHIVQELLGNDSKTCPAEENVEAICQFFNTIGKQLDENPKARR 364

Query: 242 VNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNL 301
           VNDVYFSRLKELTTN  L PR RFM+ DVLDLRAN+WVPRREE+KAKTI+EIHSEAEKNL
Sbjct: 365 VNDVYFSRLKELTTNPHLAPRCRFMVRDVLDLRANSWVPRREEVKAKTISEIHSEAEKNL 424

Query: 302 GLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVP 361
           GLRPGATA+MRNGR  ATGG+GPGGFPI RPG+GGMMPGMPG  KMPG+PG D DNWEVP
Sbjct: 425 GLRPGATAVMRNGRN-ATGGVGPGGFPIGRPGSGGMMPGMPGMMKMPGIPGLDADNWEVP 483

Query: 362 RSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSA 421
           RSR MPRG+S  P+   G V + LI KSP +N++ LPQGSGG+I+GK S LLQGS  PS 
Sbjct: 484 RSRAMPRGNSFGPTHVAGHVPTSLINKSPPLNARLLPQGSGGVIAGKPSLLLQGSGAPS- 542

Query: 422 RPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRI 481
           RP G A+  EP  Q  KPVAPA S + SP+KP AP T+ N  DLR+KT+SLLEEYFS+RI
Sbjct: 543 RP-GFATRTEPAGQTPKPVAPAVSAIPSPQKPLAPTTRSNPDDLRRKTISLLEEYFSVRI 601

Query: 482 LDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTG 541
           LDEALQCVEEL+  ++HPEV KEAIALALEK PPCVEPV++LLEFLL KNVLT RDIGTG
Sbjct: 602 LDEALQCVEELKDTSFHPEVAKEAIALALEKSPPCVEPVVKLLEFLLTKNVLTARDIGTG 661

Query: 542 CLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAA 601
           CLLYGS LDDIGIDLPKAPNNFGE++G LVVA+ LDF V KEVLKKVED+ FR++IF++A
Sbjct: 662 CLLYGSSLDDIGIDLPKAPNNFGEILGSLVVAQGLDFEVFKEVLKKVEDDRFRKAIFSSA 721

Query: 602 MKSIQSSPAGQEVLAVQGAEVQACESLLT 630
           M SI S+P+GQEVLA QG+ +QACESLL+
Sbjct: 722 MMSINSNPSGQEVLATQGSNIQACESLLS 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484894|ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833057|emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484892|ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475890|ref|XP_002285559.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562557|ref|XP_003549536.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356562555|ref|XP_003549535.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224092613|ref|XP_002309681.1| predicted protein [Populus trichocarpa] gi|222855657|gb|EEE93204.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356500679|ref|XP_003519159.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] Back     alignment and taxonomy information
>gi|309296913|gb|ADO64264.1| eukaryotic initiation factor iso4G [Carica papaya] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
TAIR|locus:2174353780 eIFiso4G1 "AT5G57870" [Arabido 0.966 0.780 0.603 2.8e-192
TAIR|locus:2061370747 eIFiso4G2 "AT2G24050" [Arabido 0.955 0.805 0.592 5.6e-187
UNIPROTKB|Q1MSJ4793 eif(iso)4g "Putative eukaryoti 0.973 0.773 0.603 3.9e-186
UNIPROTKB|Q1MSJ3793 eif(iso)4g "Putative eukaryoti 0.973 0.773 0.601 1e-185
UNIPROTKB|Q1MSJ1793 eif(iso)4g "Putative eukaryoti 0.973 0.773 0.6 4.5e-185
UNIPROTKB|Q1MSJ0793 eif(iso)4g "Putative eukaryoti 0.973 0.773 0.598 1.2e-184
UNIPROTKB|Q1MSJ2790 eif(iso)4g "Putative eukaryoti 0.968 0.772 0.595 2e-182
TAIR|locus:2131919263 AT4G30680 "AT4G30680" [Arabido 0.353 0.847 0.495 2.6e-54
TAIR|locus:20819271727 EIF4G "AT3G60240" [Arabidopsis 0.417 0.152 0.420 6.6e-54
UNIPROTKB|F1NQU7 864 EIF4G2 "Eukaryotic translation 0.4 0.291 0.4 8.5e-53
TAIR|locus:2174353 eIFiso4G1 "AT5G57870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1863 (660.9 bits), Expect = 2.8e-192, P = 2.8e-192
 Identities = 376/623 (60%), Positives = 460/623 (73%)

Query:     7 EGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEK 66
             + Q NSQF+ A IS+NQG GPAP L+KAEVPWSARRGNLSE DRVLKTVKGILNKLTPEK
Sbjct:   171 QDQPNSQFSRANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILNKLTPEK 230

Query:    67 FDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG 126
             +D+LKGQLI+SGIT+ DILKGVI LIFDKAVLEPTFCPMYA LCSD+N++LP FP  EPG
Sbjct:   231 YDLLKGQLIESGITSADILKGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTFPPAEPG 290

Query:   127 GKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGE 186
              K+ITFKR+LLN CQEAFEGA   R E+RQM+AP+QE ER D+E+L+KL+TLGNIRLIGE
Sbjct:   291 DKEITFKRVLLNICQEAFEGASQLREELRQMSAPDQEAERNDKEKLLKLKTLGNIRLIGE 350

Query:   187 LLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVY 246
             LLKQKMVPEKIVHHIVQELL  D K CPAEENVEAIC FF TIGKQLD N KS+R+NDVY
Sbjct:   351 LLKQKMVPEKIVHHIVQELLGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSKRINDVY 410

Query:   247 FSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPG 306
             F RL+ L+ N QL  RLRFM+ +++D+R+N WVPRREEMKA+TITEIH+EAEKNLGLRPG
Sbjct:   411 FKRLQALSKNPQLELRLRFMVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKNLGLRPG 470

Query:   307 ATAXXXXXXXXXXXXXXXX-XFPIARXXXXXXXXXXXXXXXXXXXXXFDTDNWEVPRSRT 365
             ATA                  +P  R                      D DNWEVPR+R+
Sbjct:   471 ATANMRRGMVSSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRS 530

Query:   366 MPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSG 425
             M R D       PG + SP + KS S+N++ LPQGS GI+SGKTSALLQGS + S RP  
Sbjct:   531 MSRRDG------PGPLHSPAVSKSASMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVT 583

Query:   426 IASGVEPLTQYTXXXXXXXXXXXXXXXXXXXXTKLNLADLRKKTVSLLEEYFSIRILDEA 485
             + S   P                          KL+   L++KT SLLEEYF++R+L EA
Sbjct:   584 V-SAERP-----AQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEA 637

Query:   486 LQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLY 545
             LQCVEEL  P+YHPE VKEAI+L+LEK PP VEP+  LLE+LL+K V+  +D+ TG LLY
Sbjct:   638 LQCVEELGLPSYHPEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLY 697

Query:   546 GSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSI 605
             G++LDDIGIDLPKAPNNFGE+VGKL++A  +DF +++E++ K+ED+ F++ +  AA++ +
Sbjct:   698 GAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIV 757

Query:   606 QSSPAGQEVLAVQGAEVQACESL 628
             +SS  G+ +LA Q A+++AC +L
Sbjct:   758 ESSEQGKSLLASQAADIEACRNL 780
GO:0003723 "RNA binding" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006412 "translation" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2061370 eIFiso4G2 "AT2G24050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ4 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ3 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ1 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ0 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ2 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2131919 AT4G30680 "AT4G30680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQU7 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84PB3IF4G1_ORYSJNo assigned EC number0.64950.96190.7641yesno
Q93ZT6IF4G1_ARATHNo assigned EC number0.64740.96820.7820yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVIII0175
hypothetical protein (750 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
pfam02854198 pfam02854, MIF4G, MIF4G domain 8e-52
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 2e-46
pfam02847113 pfam02847, MA3, MA3 domain 2e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 8e-28
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  176 bits (449), Expect = 8e-52
 Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 34/229 (14%)

Query: 52  LKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCS 111
           LK VKG+LNKL+P  F+ +  +L+   ++  ++LK ++ELIF+KAV EP F P YA LC+
Sbjct: 1   LKKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCA 60

Query: 112 DLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQER 171
            LN K P             F  +LLN  QE FE                      ++ER
Sbjct: 61  GLNSKNP------------DFGELLLNRLQEEFEKGVE------------------EEER 90

Query: 172 LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCP-AEENVEAICQFFNTIG 230
             + R LG +R +GEL   K++ EKI+   ++ELLE+  +  P  E ++E +     T G
Sbjct: 91  GNRKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILLLLLTTCG 150

Query: 231 KQLDENPKSRRVNDVYFSRLKE--LTTNSQLVPRLRFMIHDVLDLRANN 277
           K LD   K +++ D    R+++  L+ + +L  RLRFM+ D+++LR N 
Sbjct: 151 KLLD-REKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 630
KOG0401970 consensus Translation initiation factor 4F, riboso 100.0
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 100.0
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.96
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.9
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.9
KOG0403645 consensus Neoplastic transformation suppressor Pdc 99.87
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.86
KOG2140739 consensus Uncharacterized conserved protein [Gener 99.79
KOG2141822 consensus Protein involved in high osmolarity sign 99.47
KOG2051 1128 consensus Nonsense-mediated mRNA decay 2 protein [ 99.15
KOG3942348 consensus MIF4G domain-containing protein [Transla 98.84
KOG0401970 consensus Translation initiation factor 4F, riboso 98.1
KOG20511128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.1
KOG1104 759 consensus Nuclear cap-binding complex, subunit NCB 95.11
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 87.29
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 86.27
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 84.14
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-65  Score=598.20  Aligned_cols=595  Identities=35%  Similarity=0.517  Sum_probs=448.1

Q ss_pred             CCCCCCcccccccCCcccccCCCChHHHHHHHHHHHhhcCChhhHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcCCCc
Q 006823           23 QGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTF  102 (630)
Q Consensus        23 ~~~~p~~~l~~~~~~w~~~~~~~~~~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i~~~e~L~~vi~lIfeKAi~Ep~f  102 (630)
                      ++..|.+...++..+|...+..++..+++.+.|++|||||||++|+.+..+++++.+++...|+++|.+||||||.||+|
T Consensus       321 ~~~~ps~k~a~~~~~~~~~~~~~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i~t~~~l~~vi~~vfdkAi~EP~f  400 (970)
T KOG0401|consen  321 KAPSPSPKRAKSKSDQGAERKDVELKEELAKRVRSLLNKLTPERKELLIEQLIELNVDTDDALKEVIELVFDKAINEPTF  400 (970)
T ss_pred             CCCCCcchhhccccccccccchhHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhccCcHHHHhHHHHHHHHhhhccccc
Confidence            46677777888888887777777888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHHHHHHHhchh-chHHHHhhcCChHH-HHHHhhHHHHHHhhhhhH
Q 006823          103 CPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGAD-NTRAEIRQMTAPEQ-EMERMDQERLVKLRTLGN  180 (630)
Q Consensus       103 s~~YA~LC~~L~~~lp~~~~~e~~~~~~~Fr~~LL~~cQ~eFe~~~-~~~~e~~~~~~~e~-e~e~~d~e~~~K~r~lGn  180 (630)
                      |.|||+||..|.. ++..+.-+.++..++||++||++||++|+... ...+++...+.+++ |.+..+.+.++++|++||
T Consensus       401 ~~~yA~lc~~l~~-~~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~~~~~~e~~le~~k~~~~~rtlgn  479 (970)
T KOG0401|consen  401 CAMYARLCFDLEG-PPSEPELDMGGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAEEPDELEEELEEEKYILRRRTLGN  479 (970)
T ss_pred             chhcchhcccccC-CccCCCcCCCCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhcCchhHHHHHHhccceecCCccch
Confidence            9999999999998 55555445556788999999999999999987 56667777666655 566667778899999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCC
Q 006823          181 IRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLV  260 (630)
Q Consensus       181 irFIGELfk~~~l~e~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l~~~~~ls  260 (630)
                      |+|||+||+..|++++|||.|++.||..+.   ++|++|||+|+|++|+|+.||........||.||.+++.+...+.++
T Consensus       480 ~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~---~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~~~s  556 (970)
T KOG0401|consen  480 FRFIGELFKLKMLTEKIVHACVQKLLSDDQ---PSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKPQRS  556 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhhhhc
Confidence            999999999999999999999999998742   78999999999999999999975444334999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCCCCcccccCCC-cHHHHHHHHHHHcCCCCchhhhhhcCCCCCC---CCCC-----CCCCCCCC
Q 006823          261 PRLRFMIHDVLDLRANNWVPRREEMKAK-TITEIHSEAEKNLGLRPGATAMMRNGRTGAT---GGMG-----PGGFPIAR  331 (630)
Q Consensus       261 ~Rirfmi~dlidLR~n~W~~r~~~~~pk-ti~ei~~ea~~~~~~~~~~~~~~r~~~~~~~---~~~~-----~~~~~~~~  331 (630)
                      +|+|||+++++|||.++|++|+.+.+++ +|++||.++....+..+.....++..+.+..   +..+     +......+
T Consensus       557 ~r~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (970)
T KOG0401|consen  557 NRIRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAPEAPSANRWSPKSLSKKTEGRLAEESDSGLLGKEVVERKGKSGLR  636 (970)
T ss_pred             cchhhhhccccccccccccchhcccCCCCchhhcchhhhhhcccCcccccccccccccccccccccCccccccccccccc
Confidence            9999999999999999999999988877 9999999998887655544443333321110   0000     11111223


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccccCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CccCCCCCCCCc
Q 006823          332 PGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSR--TMPRGDSKSPSQFPGRVQSPLIGKSPSIN----SKFLPQGSGGII  405 (630)
Q Consensus       332 ~~~gg~~p~~~~~~~~~~~~g~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  405 (630)
                      ...+.++++++...-....+.++.++|.+....  ..++.....  +.......+..++.-...    .+..++|+.|..
T Consensus       637 ~~~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~~~~k~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~  714 (970)
T KOG0401|consen  637 KLTPEMFDKISDPILDIADQSMDEEDGEASKQKGEQGGRKASDE--QHFSSMRAPALEKVVPSLSSDIDDKRNRGSNGEL  714 (970)
T ss_pred             cCChhhcccccccccccchhhccccccchhhhcccccccccCcc--ccccccCCccccccccccccccccccccCCcccc
Confidence            334444444443322333445566667654332  111111111  001011122222111111    122334443321


Q ss_pred             cC-C-cccccC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHhc
Q 006823          406 SG-K-TSALLQ---GSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVT--KLNLADLRKKTVSLLEEYFS  478 (630)
Q Consensus       406 s~-~-~s~~~~---~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~--~~s~eel~kk~~~il~EY~~  478 (630)
                      .. + .++...   ..+....++++....+     .++-+.+. ..++.+....+.+.  .++.+++..++++|+.||++
T Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-----~~e~~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~~sk~l~ee~~~  788 (970)
T KOG0401|consen  715 LSDSYLSARCHEEFENGWSRELPSGKDGER-----EPEMMSPE-YYAAKAAKRAGLGLVIALSSELLELLSKSLLEEFLS  788 (970)
T ss_pred             ccccccchhhhhhccccccccCCCCccccc-----chhhcCcc-cchhhhhhccCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence            11 1 111111   1111111111111111     00001110 00111122233344  78999999999999999999


Q ss_pred             CCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccchhhhcCCCc
Q 006823          479 IRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPK  558 (630)
Q Consensus       479 ~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~vle~l~Dl~iDvP~  558 (630)
                      ..+.+|++.|+++|++|.+|+.+|..+|+..+++++..++++++||..|+..+.++.+++..||...+..++|+.||+|+
T Consensus       789 ~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~d~pk  868 (970)
T KOG0401|consen  789 LRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETLEIGYREKFKLADDKELDLPK  868 (970)
T ss_pred             HhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHHhhhHHHHHhhhHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCH-HHHHHHHhhccchHHHHHHHHHHHHHhhcCCCchhHHHHhhhhHHHHhhhh
Q 006823          559 APNNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLL  629 (630)
Q Consensus       559 A~~~la~~iarai~~~~l~~-~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~v~~~~~~~~~~~~~~~  629 (630)
                      +|.|+++|++..+..+++++ ..+..+...+.+.+++..++.+++..+....++.++.+.++....+|+.++
T Consensus       869 ~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  940 (970)
T KOG0401|consen  869 GWNYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEKELGRADLGDIQRESFLSTKTLL  940 (970)
T ss_pred             chhHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHHhhhHHHHHHHHHHhcccchhcc
Confidence            99999999999999999999 566778888999999999999999999988889999999999999998764

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification] Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 1e-39
2vso_E284 Crystal Structure Of A Translation Initiation Compl 7e-19
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 9e-07
3rk6_A234 Crystal Structure Of The Middle Domain Of Human Pai 2e-04
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 2e-04
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 2e-04
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 2e-04
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 2e-04
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 3e-04
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 3e-04
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 3e-04
2iol_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 8e-04
2zu6_B307 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 8e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 151/260 (58%), Gaps = 23/260 (8%)
Query: 51  VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLC 110
           + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   YA  C
Sbjct: 11  LFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANXC 70
Query: 111 SDL-NEKLPPFPSDEPGGKDITFKRILLNHCQEAFE--GADN-----TRAEIRQMTAPEQ 162
             L   K+P   +D+PG   + F+++LLN CQ+ FE   AD+      + E+   +APE+
Sbjct: 71  RCLVTLKVP--XADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEE 127
Query: 163 EMERMDQ----ERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEEN 218
                D+    +   + R++GNI+ IGEL K K + E I H  V +LL+N       EE+
Sbjct: 128 RTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHD-----EES 182
Query: 219 VEAICQFFNTIGKQLD-ENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANN 277
           +E +C+   TIGK LD E  K R   D YF++ +++    +   R+RF + DV+DLR  N
Sbjct: 183 LECLCRLLTTIGKDLDFEKAKPR--XDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCN 240
Query: 278 WVPRREEMKAKTITEIHSEA 297
           WV RR +   KTI +IH EA
Sbjct: 241 WVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1 Length = 234 Back     alignment and structure
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 1 Length = 150 Back     alignment and structure
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 307 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 3e-79
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 6e-69
3rk6_A234 Polyadenylate-binding protein-interacting protein; 5e-57
2i2o_A224 EIF4G-like protein; protein structure initiative, 2e-56
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-35
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 1e-33
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 8e-33
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 7e-28
2zu6_B 307 Programmed cell death protein 4; protein-protein c 1e-32
2zu6_B307 Programmed cell death protein 4; protein-protein c 6e-30
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 2e-32
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 4e-31
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 6e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 4e-11
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  250 bits (640), Expect = 3e-79
 Identities = 96/262 (36%), Positives = 149/262 (56%), Gaps = 19/262 (7%)

Query: 47  EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY 106
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 107 ALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFE-------GADNTRAEIRQMTA 159
           A +C  L     P       G  + F+++LLN CQ+ FE         +  + E+   +A
Sbjct: 67  ANMCRCLVTLKVPMADKP--GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 160 PEQ----EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPA 215
           PE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL+N       
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HD 179

Query: 216 EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA 275
           EE++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DLR 
Sbjct: 180 EESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238

Query: 276 NNWVPRREEMKAKTITEIHSEA 297
            NWV RR +   KTI +IH EA
Sbjct: 239 CNWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.98
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.97
2zu6_B307 Programmed cell death protein 4; protein-protein c 99.96
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 99.95
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 99.95
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 99.95
2zu6_B 307 Programmed cell death protein 4; protein-protein c 99.94
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 99.94
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.73
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 98.83
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 95.56
4b89_A249 General negative regulator of transcription subun; 95.05
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=1.3e-56  Score=460.14  Aligned_cols=242  Identities=40%  Similarity=0.721  Sum_probs=184.7

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh-hCCCCCCCCC
Q 006823           47 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE-KLPPFPSDEP  125 (630)
Q Consensus        47 ~~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i~~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~-~lp~~~~~e~  125 (630)
                      +.+++.|+|++|||||||+||+.|+.||+++++.+.+.+++||++||+||+.||+|+.|||+||..|+. .+|..   +.
T Consensus         7 ~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~   83 (260)
T 1hu3_A            7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DK   83 (260)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-------
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cC
Confidence            347899999999999999999999999999999999999999999999999999999999999999988 46543   22


Q ss_pred             CCchhhHHHHHHHHHHHHHhchhchHH-------HHhhcCChHH--HH--HHhhHHHHHHhhhhhHHHHHHHHHhcCCCC
Q 006823          126 GGKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQ--EM--ERMDQERLVKLRTLGNIRLIGELLKQKMVP  194 (630)
Q Consensus       126 ~~~~~~Fr~~LL~~cQ~eFe~~~~~~~-------e~~~~~~~e~--e~--e~~d~e~~~K~r~lGnirFIGELfk~~~l~  194 (630)
                      ++....||++||++||++|++.+....       ++.....+++  ++  |..+.+.+.|+|++|+|+||||||+++|++
T Consensus        84 ~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~  163 (260)
T 1hu3_A           84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT  163 (260)
T ss_dssp             -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             CccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence            335678999999999999999875321       1111111111  00  111122457899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 006823          195 EKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR  274 (630)
Q Consensus       195 e~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l~~~~~ls~Rirfmi~dlidLR  274 (630)
                      ++|||+||..||++     |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.+..+.++|+|+||||+||+|||
T Consensus       164 ~~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR  237 (260)
T 1hu3_A          164 EAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLR  237 (260)
T ss_dssp             HHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            99999999999986     7999999999999999999996 45567899999999999999999999999999999999


Q ss_pred             hCCCCCcccccCCCcHHHHHHHH
Q 006823          275 ANNWVPRREEMKAKTITEIHSEA  297 (630)
Q Consensus       275 ~n~W~~r~~~~~pkti~ei~~ea  297 (630)
                      +|||++++.+.+||||+|||+||
T Consensus       238 ~~~W~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          238 LCNWVSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             HTTTCC-----------------
T ss_pred             HcCCCCCccccCCCcHHHHHhhC
Confidence            99999999999999999999987
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 630
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 2e-67
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 7e-47
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 7e-33
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 3e-31
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 6e-06
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  218 bits (555), Expect = 2e-67
 Identities = 87/244 (35%), Positives = 139/244 (56%), Gaps = 19/244 (7%)

Query: 47  EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY 106
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 107 ALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRQMTA 159
           A +C  L     P    +  G  + F+++LLN CQ+ FE         +  + E+   +A
Sbjct: 67  ANMCRCLVTLKVPM--ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 160 PEQEM----ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPA 215
           PE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL+N       
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HD 179

Query: 216 EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA 275
           EE++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DLR 
Sbjct: 180 EESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238

Query: 276 NNWV 279
            NWV
Sbjct: 239 CNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.97
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.97
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.17
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=367.72  Aligned_cols=226  Identities=38%  Similarity=0.690  Sum_probs=183.9

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhCCCCCCCCCC
Q 006823           47 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG  126 (630)
Q Consensus        47 ~~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i~~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~  126 (630)
                      +.+++.|+|+++|||||++||+.++++|+++.+++.+.++.+|+.||+||+.||+|+++||+||..|....+...  +.+
T Consensus         7 ~~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~--~~~   84 (243)
T d1hu3a_           7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA--DKP   84 (243)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-------
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccc--ccc
Confidence            346899999999999999999999999999999999999999999999999999999999999999999876553  333


Q ss_pred             CchhhHHHHHHHHHHHHHhchhchHHHHh-------hcCChHHH----HHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCH
Q 006823          127 GKDITFKRILLNHCQEAFEGADNTRAEIR-------QMTAPEQE----MERMDQERLVKLRTLGNIRLIGELLKQKMVPE  195 (630)
Q Consensus       127 ~~~~~Fr~~LL~~cQ~eFe~~~~~~~e~~-------~~~~~e~e----~e~~d~e~~~K~r~lGnirFIGELfk~~~l~e  195 (630)
                      ++...|++.||++||++|++.........       ....++++    .+..+.+.+.|+|++|+++||||||+.++++.
T Consensus        85 ~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~  164 (243)
T d1hu3a_          85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE  164 (243)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccchH
Confidence            45678999999999999998753221111       11111110    11112223567899999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh
Q 006823          196 KIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA  275 (630)
Q Consensus       196 ~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l~~~~~ls~Rirfmi~dlidLR~  275 (630)
                      +++++|+..|+.+     |+|++|||+|.||++||+.|+. +.++..||.||++|+.+.++.++|+||||||+||+|||+
T Consensus       165 ~~i~~~l~~Ll~~-----~~e~~ie~l~~lL~~~G~~L~~-~~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~  238 (243)
T d1hu3a_         165 AIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL  238 (243)
T ss_dssp             HHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999986     6999999999999999999986 345578999999999999999999999999999999999


Q ss_pred             CCCCC
Q 006823          276 NNWVP  280 (630)
Q Consensus       276 n~W~~  280 (630)
                      +||++
T Consensus       239 ~~W~s  243 (243)
T d1hu3a_         239 CNWVS  243 (243)
T ss_dssp             TTTCC
T ss_pred             cCCCC
Confidence            99984
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure