Citrus Sinensis ID: 006833

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
MDSGEFDYQRRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNWRQNSERTAEPESLQPGLARKSRRGSDNLTPSRRPKSRKSASPATGMTRTTSFTIKKKTKVIPNFTKLFSGKKID
cccccccccccccHHHHHHHHccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHccccc
cccccEccccccHHHHHHHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEcHcHcHHHHHHHHccccc
mdsgefdyqrrTGSVkaagnmyggspsvkkshldipessssRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEktnhqaipsmRYVERLekssgieeNVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLkmrsnsssvEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHnelksvkdkdklvqgndslkgthsiyqsgeelegspllpsksVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARAsasqnsssitisnfeyeylRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNWRqnsertaepeslqpglarksrrgsdnltpsrrpksrksaspatgmtrttsftikkktkvipnftklfsgkkid
MDSGEFDYQRRTgsvkaagnmyggspsvkkshldipessssrarELHMARRDISRYKESRKAAEsvkaqaeselstarktvKDLACRIektnhqaipsmryverlekssgieenvlaersreshRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEkeieasslkmrsnsssveglrkeieevneeqvlVELARIEALKEYGEIEAErekeanefsasmEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNelksvkdkdklvqgndslKGTHSIyqsgeelegspllpSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREEtarlkkgeekteltvQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQArasasqnsssitisNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHReirhtrveeekevfksertrstkrrverelrnwrqnsertaepeslqpglarksrrgsdnltpsrrpksrksaspatgmtrttsftikkktkvipnftklfsgkkid
MDSGEFDYQRRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKeieevneeqvlveLARIEALKeygeieaerekeaneFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVkeeleaakkelaaikeeGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFtleqlkteaeaakkekelvteetakIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARasasqnsssitisnFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNWRQNSERTAEPESLQPGLARKSRRGSDNLTpsrrpksrksaspaTGMTRTTSFTIKKKTKVIPNFTKLFSGKKID
*************************************************************************************CR******************************************************************************************************VLVELARIEALKEY*****************************EEIDHCKELENKLAVTLYDVNFLHNELK********************************************************GFRFMASMDVIRN*************************************************IAGNLAFTL***********************************************************************************ITISNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKAS***IL***************************************************************************************************KVIPNFT*********
*DSGEFDYQRRTGSVKAAGN**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FTKLFSGK***
**********RTGSVKAAGNMYGGSPS********************MARRDIS************************KTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEE*************************RKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKT************SITISNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTR********************ERELRNW***********************************************RTTSFTIKKKTKVIPNFTKLFSGKKID
*********RRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDS*KGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQA******NSSSITISNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNWRQNSERT******************************************TSFTIKKKTKVIPNFTKLFSGK***
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MDSGEFDYQRRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEKTNHQAIPSMRYVERLEKSSGIEENVLAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRIEALKEYGEIEAEREKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPxxxxxxxxxxxxxxxxxxxxxGFRFMASMDVIRNELRHVREETARLKKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEKANGIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKxxxxxxxxxxxxxxxxxxxxxSERTAEPESLQPGLARKSRRGSDNLTPSRRPKSRKSASPATGMTRTTSFTIKKKTKVIPNFTKLFSGKKID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query629 2.2.26 [Sep-21-2011]
Q9C9N6607 Protein PLASTID MOVEMENT yes no 0.936 0.970 0.424 2e-98
Q9FF41579 Protein PLASTID MOVEMENT no no 0.885 0.962 0.406 7e-82
Q9LVQ4649 WEB family protein At5g55 no no 0.949 0.919 0.297 2e-41
O48724807 Protein WEAK CHLOROPLAST no no 0.856 0.667 0.272 7e-21
Q9SZB6779 Protein WEAK CHLOROPLAST no no 0.961 0.776 0.252 3e-14
Q9FWW5548 WEB family protein At1g12 no no 0.806 0.925 0.241 3e-11
Q9C638752 Protein WEAK CHLOROPLAST no no 0.796 0.666 0.254 4e-09
Q9FMN1751 Protein WEAK CHLOROPLAST no no 0.825 0.691 0.247 1e-06
>sp|Q9C9N6|PMI2_ARATH Protein PLASTID MOVEMENT IMPAIRED 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1 Back     alignment and function desciption
 Score =  360 bits (925), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 263/619 (42%), Positives = 375/619 (60%), Gaps = 30/619 (4%)

Query: 12  TGSVKAAGNMYG--GSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQ 69
           T SVKA  N YG   + SV KS         S A +LH + R++  Y+ESR+ AES KA+
Sbjct: 9   TVSVKATINKYGQKATRSVIKS---------SVAEDLHKSGRELGIYRESRRVAESAKAK 59

Query: 70  AESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEV 129
           AE EL  A+K VK+L  RIE++N +       +E +   S I+ N           Y  +
Sbjct: 60  AEVELCKAKKIVKELTLRIEESNRRLKSRRIDIEAVMNESRIDGN---------GGYVRI 110

Query: 130 MRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQ 189
           MRELE +KQELSKLKLD+  V  EK  AEKE+     +M  N   +E L+ E++  NEE 
Sbjct: 111 MRELEDMKQELSKLKLDVVYVSREKVVAEKEVMELESRMEENLKLLESLKLEVDVANEEH 170

Query: 190 VLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTL 249
           VLVE+A+IEALKE  E+E +REKE  E S S+   K++++++  EI+  K  EN+LA TL
Sbjct: 171 VLVEVAKIEALKECKEVEEQREKERKEVSESLHKRKKRIREMIREIERSKNFENELAETL 230

Query: 250 YDVNFLHNELKSVKDKDKLVQGNDSL-KGTHSIYQSGEELEGSPLLPSKSVKEELEAAKK 308
            D+  L  +LK VK+ ++ VQ N+S+ +  +  ++ G++     L   K V E  EA K 
Sbjct: 231 LDIEMLETQLKLVKEMERKVQRNESMSRSKNRAFERGKD----NLSVLKEVTEATEAKKA 286

Query: 309 ELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368
           ELA+I  E F  + +MD +R E  H ++ETA L K  +K ++ ++ LN+KLL AK +LEA
Sbjct: 287 ELASINAELFCLVNTMDTLRKEFDHAKKETAWLDKMIQKDDVMLERLNTKLLIAKDQLEA 346

Query: 369 VSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEK 428
           VS AEE+ + +A NL  + E+LK++ EAAKKE+  + EE   I  EIQKTE      E++
Sbjct: 347 VSKAEERISYLADNLTTSFEKLKSDREAAKKEELKLREEARIINNEIQKTETGFDGKEKE 406

Query: 429 IETSMQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYEYLRGRAVGA 488
           + + + EL   K +E+LA + L++++EKTM+ R   S+ +S+ITIS FEYEYL G+A  A
Sbjct: 407 LLSKLDELEKAKHAESLALEKLETMVEKTMETREMESRRNSTITISRFEYEYLSGKACHA 466

Query: 489 EELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRV 548
           EE A+KKV AA AW+EALKAS K I++K E   R    T +EEE+E F+ +R+ S KR V
Sbjct: 467 EETAEKKVEAAMAWVEALKASTKAIMIKTESLKRVSGKTMLEEERESFRMQRSLSIKRLV 526

Query: 549 ERELRNWRQNSERTAEPESLQPGLARKSRRGSDNLTPSRRPKSRKSASPATGMTRTTSFT 608
           + E++ ++ NSE      S +P   RKS R S    P +  KSR+ +S   G   T +F 
Sbjct: 527 QDEIQKFKGNSEDNGLINSPKP--VRKSVRLSGKFAPVQGGKSRRYSS---GNRATPTFF 581

Query: 609 IKKKTKVIPNFTKLFSGKK 627
           + KK K +PN  K FS K+
Sbjct: 582 VIKKKKKVPNMVKFFSRKR 600
Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with WEB1 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FF41|PMI15_ARATH Protein PLASTID MOVEMENT IMPAIRED 15 OS=Arabidopsis thaliana GN=PMI15 PE=2 SV=3 Back     alignment and function description
>sp|Q9LVQ4|Y5586_ARATH WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=2 SV=1 Back     alignment and function description
>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FWW5|Y1215_ARATH WEB family protein At1g12150 OS=Arabidopsis thaliana GN=At1g12150 PE=2 SV=1 Back     alignment and function description
>sp|Q9C638|WEL2_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2 OS=Arabidopsis thaliana GN=WEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 OS=Arabidopsis thaliana GN=WEL3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query629
224069565642 predicted protein [Populus trichocarpa] 0.977 0.957 0.602 0.0
255574328650 Myosin heavy chain, putative [Ricinus co 0.974 0.943 0.625 0.0
224077202632 predicted protein [Populus trichocarpa] 0.969 0.965 0.589 0.0
359488246639 PREDICTED: protein PLASTID MOVEMENT IMPA 0.990 0.974 0.583 0.0
147865183 752 hypothetical protein VITISV_041029 [Viti 0.969 0.811 0.586 1e-176
356502420620 PREDICTED: protein PLASTID MOVEMENT IMPA 0.963 0.977 0.563 1e-165
356567254615 PREDICTED: protein PLASTID MOVEMENT IMPA 0.955 0.977 0.562 1e-164
449442066642 PREDICTED: protein PLASTID MOVEMENT IMPA 0.977 0.957 0.521 1e-135
357508199540 Protein PLASTID MOVEMENT IMPAIRED [Medic 0.847 0.987 0.538 1e-124
356573367610 PREDICTED: protein PLASTID MOVEMENT IMPA 0.898 0.926 0.465 1e-120
>gi|224069565|ref|XP_002303000.1| predicted protein [Populus trichocarpa] gi|222844726|gb|EEE82273.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/629 (60%), Positives = 480/629 (76%), Gaps = 14/629 (2%)

Query: 13  GSVKAAGNMYG------GSPSVK-KSHLDIPESSSSRARELHMARRDISRYKESRKAAES 65
           G+VKAA NMYG       S S+K  + +D+PE SSSRA+ELHMA+RD+ RYKE+R+AAES
Sbjct: 13  GTVKAAVNMYGERILESSSSSLKTPAQMDLPEKSSSRAKELHMAKRDLVRYKENRRAAES 72

Query: 66  VKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHR 125
            K +AESELS A++TVK+L  +IEK+N +    +R +ERL K S  ++  L   S ESH+
Sbjct: 73  AKVKAESELSEAKRTVKELVLQIEKSNLKVKAQVRDMERLNKLSKRQDMALIVGSDESHQ 132

Query: 126 YAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEV 185
           YAEV+RELE VKQELSKLKL+MASVLE K+RAEKEI  S  K+ SN S  E LRK+I+E 
Sbjct: 133 YAEVIRELEGVKQELSKLKLEMASVLEAKTRAEKEIATSISKLSSNMSHAEALRKKIDEA 192

Query: 186 NEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKL 245
           NEEQVLVELA+IEALKE+GEI+A+REKEA EFS++M+  K K K++ EEI    +LE+KL
Sbjct: 193 NEEQVLVELAQIEALKEFGEIQAQREKEAREFSSAMQETKNKRKNVKEEISSSTDLESKL 252

Query: 246 AVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEA 305
           AVTLYDVN + +ELK  KDKD  VQ NDS+K     ++ G++LE S LL  KS+ EEL+A
Sbjct: 253 AVTLYDVNLIQHELKLAKDKDAKVQRNDSMKHLGGSFREGKQLEDSSLL--KSITEELQA 310

Query: 306 AKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAK 365
           AKKELA+ +EEGF+FM SMD++RNEL+HV EET +LKK +EK ++T QNLNSKLLRAK+K
Sbjct: 311 AKKELASTREEGFQFMTSMDIVRNELKHVTEETVQLKKVKEKADITAQNLNSKLLRAKSK 370

Query: 366 LEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSA 425
           LE  +A EEKA     +L+ TLEQLKTEAE A+KEK+L+ EETAKIK EI+ T+++I   
Sbjct: 371 LETATAVEEKARSTLSSLSVTLEQLKTEAEVARKEKKLICEETAKIKAEIRNTDSQIDLT 430

Query: 426 EEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYEYLRGRA 485
           EEK++ ++QEL+AVK SE+ A  NLK++IE TM++RASASQ+SSSITIS FEYEYL G A
Sbjct: 431 EEKLQYAIQELDAVKKSESSALQNLKNVIENTMRSRASASQHSSSITISKFEYEYLTGHA 490

Query: 486 VGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTK 545
             AEE+ADKKVAAA AWIEALKASEKEILMK+E+AH +IR TRVEEEKE++++E + S K
Sbjct: 491 AMAEEIADKKVAAAHAWIEALKASEKEILMKIELAHGDIRETRVEEEKEIYRTESSLSAK 550

Query: 546 RRVERELRNWRQNSERTAEPESLQPGLARKSRRGSDNLTPSRRPKSRKSASPATGMT--- 602
           R VE EL  WRQ S++  E E+ Q  L RKS + + NLT SRR K R + SP+  MT   
Sbjct: 551 RMVEGELPKWRQVSKKNTEAENQQQPLPRKSMKANGNLTLSRRSKLRNAGSPSVRMTPRI 610

Query: 603 --RTTSFTIKKKTKVIPNFTKLFSGKKID 629
             R+TS  I+KK  ++PN  KLF GKK+D
Sbjct: 611 TPRSTSIAIRKKRTIVPNLAKLFIGKKVD 639

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574328|ref|XP_002528078.1| Myosin heavy chain, putative [Ricinus communis] gi|223532539|gb|EEF34328.1| Myosin heavy chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224077202|ref|XP_002305176.1| predicted protein [Populus trichocarpa] gi|222848140|gb|EEE85687.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488246|ref|XP_002281016.2| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147865183|emb|CAN79831.1| hypothetical protein VITISV_041029 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502420|ref|XP_003520017.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356567254|ref|XP_003551836.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449442066|ref|XP_004138803.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Cucumis sativus] gi|449490197|ref|XP_004158534.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357508199|ref|XP_003624388.1| Protein PLASTID MOVEMENT IMPAIRED [Medicago truncatula] gi|355499403|gb|AES80606.1| Protein PLASTID MOVEMENT IMPAIRED [Medicago truncatula] Back     alignment and taxonomy information
>gi|356573367|ref|XP_003554833.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query629
TAIR|locus:2033399607 PMI2 "AT1G66840" [Arabidopsis 0.904 0.937 0.350 7.6e-80
TAIR|locus:2066301807 WEB1 "WEAK CHLOROPLAST MOVEMEN 0.864 0.674 0.228 1.1e-29
TAIR|locus:2119206779 AT4G33390 "AT4G33390" [Arabido 0.953 0.770 0.223 2.1e-28
TAIR|locus:2201961548 AT1G12150 "AT1G12150" [Arabido 0.421 0.483 0.234 8.2e-21
TAIR|locus:2176625649 AT5G55860 "AT5G55860" [Arabido 0.480 0.465 0.245 1.9e-20
TAIR|locus:2825751752 AT1G45545 "AT1G45545" [Arabido 0.866 0.724 0.202 8e-12
TAIR|locus:2160046751 AT5G42880 "AT5G42880" [Arabido 0.810 0.679 0.207 6e-11
TAIR|locus:2130729527 AT4G17210 "AT4G17210" [Arabido 0.542 0.647 0.221 1.7e-10
TAIR|locus:2057191522 AT2G38370 "AT2G38370" [Arabido 0.262 0.316 0.287 1.2e-09
ZFIN|ZDB-GENE-100921-12020 myh14 "myosin, heavy chain 14, 0.885 0.275 0.204 2.9e-07
TAIR|locus:2033399 PMI2 "AT1G66840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 207/590 (35%), Positives = 303/590 (51%)

Query:    40 SSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSM 99
             SS A +LH + R++  Y+ESR+ AES KA+AE EL  A+K VK+L  RIE++N + + S 
Sbjct:    30 SSVAEDLHKSGRELGIYRESRRVAESAKAKAEVELCKAKKIVKELTLRIEESNRR-LKSR 88

Query:   100 RY-VERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAE 158
             R  +E +   S I+ N           Y  +MRELE +KQELSKLKLD+  V  EK  AE
Sbjct:    89 RIDIEAVMNESRIDGN---------GGYVRIMRELEDMKQELSKLKLDVVYVSREKVVAE 139

Query:   159 KEIEASSLKMRSNSSSVEGLRKXXXXXXXXXXXXXLARIEALKXXXXXXXXXXXXXXXFS 218
             KE+     +M  N   +E L+              +A+IEALK                S
Sbjct:   140 KEVMELESRMEENLKLLESLKLEVDVANEEHVLVEVAKIEALKECKEVEEQREKERKEVS 199

Query:   219 ASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSL-KG 277
              S+   K++++++  EI+  K  EN+LA TL D+  L  +LK VK+ ++ VQ N+S+ + 
Sbjct:   200 ESLHKRKKRIREMIREIERSKNFENELAETLLDIEMLETQLKLVKEMERKVQRNESMSRS 259

Query:   278 THSIYQSGEELEGSPLLPSKSVXXXXXXXXXXXXXXXXXGFRFMASMDVIRNELRHVREE 337
              +  ++ G++     L   K V                  F  + +MD +R E  H ++E
Sbjct:   260 KNRAFERGKD----NLSVLKEVTEATEAKKAELASINAELFCLVNTMDTLRKEFDHAKKE 315

Query:   338 TARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFXXXXXXXXXXXX 397
             TA L K  +K ++ ++ LN+KLL AK +LEAVS AEE+ + +A NL              
Sbjct:   316 TAWLDKMIQKDDVMLERLNTKLLIAKDQLEAVSKAEERISYLADNLTTSFEKLKSDREAA 375

Query:   398 XXXXXXXXXXXXXIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKT 457
                          I  EIQKTE      E+++ + + EL   K +E+LA + L++++EKT
Sbjct:   376 KKEELKLREEARIINNEIQKTETGFDGKEKELLSKLDELEKAKHAESLALEKLETMVEKT 435

Query:   458 MQARXXXXXXXXXXXXXXFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKM 517
             M+ R              FEYEYL G+A  AEE A+KKV AA AW+EALKAS K I++K 
Sbjct:   436 METREMESRRNSTITISRFEYEYLSGKACHAEETAEKKVEAAMAWVEALKASTKAIMIKT 495

Query:   518 EMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNWRQNSERTAEPESLQPGLARKSR 577
             E   R    T +EEE+E F+ +R+ S KR V+ E++ ++ NSE      S +P   RKS 
Sbjct:   496 ESLKRVSGKTMLEEERESFRMQRSLSIKRLVQDEIQKFKGNSEDNGLINSPKP--VRKSV 553

Query:   578 RGSDNLTXXXXXXXXXXXXXXTGMTRTTSFTIKKKTKVIPNFTKLFSGKK 627
             R S                  +G   T +F + KK K +PN  K FS K+
Sbjct:   554 RLSGKFAPVQGGKSRRYS---SGNRATPTFFVIKKKKKVPNMVKFFSRKR 600
GO:0009637 "response to blue light" evidence=IMP
GO:0009903 "chloroplast avoidance movement" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0009904 "chloroplast accumulation movement" evidence=IMP
TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201961 AT1G12150 "AT1G12150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160046 AT5G42880 "AT5G42880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130729 AT4G17210 "AT4G17210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057191 AT2G38370 "AT2G38370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100921-1 myh14 "myosin, heavy chain 14, non-muscle" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9N6PMI2_ARATHNo assigned EC number0.42480.93640.9703yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II002342
hypothetical protein (642 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query629
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 1e-33
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 0.002
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information 
 Score =  133 bits (337), Expect = 1e-33
 Identities = 152/512 (29%), Positives = 249/512 (48%), Gaps = 43/512 (8%)

Query: 13  GSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAES 72
            SVK A +++GG    K       E    +  EL +A+ + ++ K+  + AE  K Q   
Sbjct: 5   ESVKEAVSLFGGIADWKAHLPQRSERVLVKETELMLAQEEANKLKKELEVAEKEKLQVLK 64

Query: 73  ELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRE 132
           EL + ++TV+DL  ++EK   +   + +  E  +     EE     +  E  RY     E
Sbjct: 65  ELESTKRTVEDLKLKLEKAEKEEQQAKQDSELAKLR--AEELEQGIQELEVERYITATAE 122

Query: 133 LESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLV 192
           L+SVK+EL K++ +  +++EE+  A K  E +    + N   VE L KEI  + E     
Sbjct: 123 LDSVKEELRKIRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERA 182

Query: 193 ELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDV 252
             A +EA +E      E++++   +   ++ A+++L+ L +++D  K+LE          
Sbjct: 183 HAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLA------- 235

Query: 253 NFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAA 312
                                      S      + E S +    SV +ELE AK  L  
Sbjct: 236 -------------------------EASAELESLQKEISIMASVASVLKELEEAKANLEK 270

Query: 313 IKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAA 372
             EE       ++ ++ EL   ++E   L++ E + E    +L ++L R K++ E+    
Sbjct: 271 AAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKES---- 326

Query: 373 EEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETS 432
             KA      +   L+Q  +EAE A+KE E   EE  K+KEE ++T+A + +AE ++E +
Sbjct: 327 --KAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALETAELRLEAA 384

Query: 433 MQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYEYLRGRAVGAEELA 492
           ++E  A K++EALA   +K+L E    A+A + +    IT+S  EYE L  +A  AEELA
Sbjct: 385 LKEAEAAKAAEALALAEIKALQESEESAKADSPRK---ITLSLEEYEELSKKAEEAEELA 441

Query: 493 DKKVAAAQAWIEALKASEKEILMKMEMAHREI 524
           +KKVAAA A +E  K SE E L K+E A +EI
Sbjct: 442 EKKVAAALAQVEEAKESENESLKKLEEASKEI 473

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 629
PF05701522 WEMBL: Weak chloroplast movement under blue light; 100.0
PF05701522 WEMBL: Weak chloroplast movement under blue light; 99.37
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.35
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.32
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.22
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.2
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.13
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.06
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.75
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.65
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.54
PRK02224880 chromosome segregation protein; Provisional 97.46
PRK02224 880 chromosome segregation protein; Provisional 97.19
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.1
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.99
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.88
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.84
PF00038312 Filament: Intermediate filament protein; InterPro: 96.75
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.49
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.49
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.47
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.4
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.3
PF00038312 Filament: Intermediate filament protein; InterPro: 96.12
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.07
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.06
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.03
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.97
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 95.95
KOG09331174 consensus Structural maintenance of chromosome pro 95.61
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.58
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.98
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.83
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.39
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 94.21
KOG0964 1200 consensus Structural maintenance of chromosome pro 94.16
COG4372499 Uncharacterized protein conserved in bacteria with 93.86
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.29
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 93.06
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 93.0
KOG0971 1243 consensus Microtubule-associated protein dynactin 92.98
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 92.93
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 92.78
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 92.59
KOG0977546 consensus Nuclear envelope protein lamin, intermed 92.5
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.25
PRK11637428 AmiB activator; Provisional 91.78
PHA02562562 46 endonuclease subunit; Provisional 90.3
KOG0963629 consensus Transcription factor/CCAAT displacement 89.97
PRK01156895 chromosome segregation protein; Provisional 89.96
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.91
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.88
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 87.72
KOG4673 961 consensus Transcription factor TMF, TATA element m 87.22
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 86.71
PRK04778569 septation ring formation regulator EzrA; Provision 86.38
PRK04863 1486 mukB cell division protein MukB; Provisional 85.18
PRK03918880 chromosome segregation protein; Provisional 84.91
PRK11637428 AmiB activator; Provisional 84.47
PHA02562562 46 endonuclease subunit; Provisional 84.35
KOG0972384 consensus Huntingtin interacting protein 1 (Hip1) 81.64
PRK04863 1486 mukB cell division protein MukB; Provisional 81.29
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 80.83
PRK09039343 hypothetical protein; Validated 80.66
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 80.63
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=7.3e-87  Score=744.76  Aligned_cols=513  Identities=40%  Similarity=0.472  Sum_probs=476.5

Q ss_pred             ccccchhhhhhhhcCCCCCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833            9 QRRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRI   88 (629)
Q Consensus         9 ~aP~eSVK~Avs~FG~~~~~kk~~~~~~e~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kL   88 (629)
                      ++||+|||+|||+|||++||++|  +.++++..++.||+++|+||++||+|+.++|.+|.+|++||+.||++|++|+++|
T Consensus         1 ~apf~SVk~Avs~FG~~~~~k~~--~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL   78 (522)
T PF05701_consen    1 SAPFESVKEAVSLFGGSIDWKKH--QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL   78 (522)
T ss_pred             CCCChHHHHHHHHcCCccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999766  3338899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcc--hhhHHHHHHhhhchhhhhhhh---hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833           89 EKTNHQAIP--SMRYVERLEKSSGIEENVLAE---RSR----ESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEK  159 (629)
Q Consensus        89 e~a~~~~~~--~~~ele~~r~~e~~~~~~~~~---~~~----e~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~  159 (629)
                      +.++.+..+  .++++..+|+.+++++....+   +..    .++||+.++++|++|++||.+++++|++++++|+.|++
T Consensus        79 e~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~  158 (522)
T PF05701_consen   79 EKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALK  158 (522)
T ss_pred             HHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998777  456778888888887665532   222    27999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006833          160 EIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCK  239 (629)
Q Consensus       160 ~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k  239 (629)
                      +++++++.+..|..++++|..+|..++++|..+.++++++.+++..|..++++++..|...|++++++|+.|+++++.++
T Consensus       159 ~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k  238 (522)
T PF05701_consen  159 QAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAK  238 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 006833          240 ELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFR  319 (629)
Q Consensus       240 ~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~  319 (629)
                      +|+++|+.++.+|..|+.+|+.++..+...  ..        ...+........+  ++++.+|+++|.+|+++++|+++
T Consensus       239 ~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~--~~--------~~~~~~~~~~~~l--~s~~~ELe~ak~~L~~~k~E~~~  306 (522)
T PF05701_consen  239 DLESKLAEASAELESLQAELEAAKESKLEE--EA--------EAKEKSSELQSSL--ASAKKELEEAKKELEKAKEEASS  306 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH--------HhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999877643221  00        0011111233345  88999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHH
Q 006833          320 FMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKK  399 (629)
Q Consensus       320 l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~  399 (629)
                      |+.+|+||+.||+++|.++..++++++.+++.|++|+.+|++++++|+.++..+.++++.+.+|+..|+|++.|++.|+.
T Consensus       307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~  386 (522)
T PF05701_consen  307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK  386 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhhHHhhhhccCCCCCccccHHhhH
Q 006833          400 EKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYE  479 (629)
Q Consensus       400 ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~~~~~~~~~~~~~~~Itis~eEye  479 (629)
                      ++..++.|+.+++.+++++++.+.|++.||+++++|++++|+||++|+++|++|+++.++.+.+.++++++||||++||+
T Consensus       387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~  466 (522)
T PF05701_consen  387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYE  466 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888776678899999999999


Q ss_pred             HHHhhHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006833          480 YLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEV  535 (629)
Q Consensus       480 ~L~~ka~eaEe~a~kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al  535 (629)
                      +|++|++++++++++||++||+||+++|+|++++|+||++++++|+++|.+|..|+
T Consensus       467 ~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al  522 (522)
T PF05701_consen  467 SLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL  522 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999885

Several sequences in this family are described as being myosin heavy chain-like.
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query629
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
2xs1_A704 Programmed cell death 6-interacting protein; prote 3e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 7e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 61/398 (15%), Positives = 140/398 (35%), Gaps = 68/398 (17%)

Query: 49   ARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKS 108
                ++R +E  +A +    + +     A   +K+L  +  +   +       ++     
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA---- 903

Query: 109  SGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKM 168
               E  + AE      R A   +ELE +  E+   +++     EE+   + + E   ++ 
Sbjct: 904  ---ETELYAEAEEMRVRLAAKKQELEEILHEMEA-RIEE----EEERSQQLQAEKKKMQQ 955

Query: 169  RSNSSSVEGLRKEIEEVNEEQVLVEL---ARIEALKEYGEIEAEREKEANEFSASMEVAK 225
            +     +  L +++EE    +  ++L        +K+  +     E + N+ +   ++ +
Sbjct: 956  Q-----MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 226  EKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSG 285
            E++ DLT  +   +E    L                 K K+K       L+         
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLT----------------KLKNKHESMISELEVR------- 1047

Query: 286  EELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGE 345
                   L   +  ++ELE  K++L                   E   + E+ A L+   
Sbjct: 1048 -------LKKEEKSRQELEKIKRKL-----------------EGESSDLHEQIAELQAQI 1083

Query: 346  EKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVT 405
             + +  +     +L  A A+LE  ++ +  A      L   +  L+ + E+ K  +    
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 406  EETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSE 443
            ++   + EE++  + E+         + QEL      +
Sbjct: 1144 KQKRDLSEELEALKTEL-EDTLDTTATQQELRGSDYKD 1180
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query629
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.89
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.4
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.16
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.29
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.91
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.82
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.66
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.19
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 90.03
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 89.98
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 86.06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 83.4
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 83.07
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 81.77
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.89  E-value=0.022  Score=55.42  Aligned_cols=10  Identities=10%  Similarity=0.262  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 006833           51 RDISRYKESR   60 (629)
Q Consensus        51 ~el~k~Keql   60 (629)
                      +.|..++.++
T Consensus         6 ~~~~~l~~~~   15 (284)
T 1c1g_A            6 KKMQMLKLDK   15 (284)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhH
Confidence            3333333333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00