Citrus Sinensis ID: 006846

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTSKFKAFCALPARPKKMFSKLLSINRSSSEKN
ccccccccccccccccccEEEEEccccccEEEEEccEEEEcccHHHccccHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEHHHHHHHHHHHHHccccccccccccccHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccccc
ccHHEcccccccHEccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHcHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccHHHHHHHccccccHHHHHHHccccccccccc
mkfmklgsrpdtfytseAVRSISSEVSSDLIIQVKGtryllhkfpllskclrlqrlcsespessqhqivqlpdfpggidAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQstkafplwsedlgitSRCIEAIASKvlthpskvslshsysrrgrddiscngaesqrhkastkgwwAEDMAELGIDLYWRTMIAIksggkipsnlVGEALKIYASrwlpnisrngrinnheasdsdsdsateVTSKHRLLLESIISLlpaekgsvSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATvsdllipclsytsdtlydVDIVMTILEQFklqgqspptspprsklgferrrsrsaENINFELqesrrsssashgskLKVAKLVDGYLQEIAKdvnlplskFITIAesvpefsrldhdDLYRAIDIYLkahpdlnkceRKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAghgidpsrpppplsttstipgddqwsipglkspkskLSTLRMKLaeddeldendlhpdgmgrtskfkafcalparpKKMFSKLLSInrsssekn
mkfmklgsrpdtfytseavrsissevssdliiQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIAskvlthpskvslshsysrrgrddiscngaesqrhkastkgwwaeDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINnheasdsdsdsatEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQfklqgqspptspprsklgferrrsrsaeninfelqesrrsssashgsKLKVAKLVDGYLQEIAKDVNLPLSKFITIAEsvpefsrlDHDDLYRAIDIYlkahpdlnkcerKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTstipgddqwsipglkspkskLSTLRMKLAeddeldendlhpdgmgrTSKFKAFCALPARPKKMFskllsinrsssekn
MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEAsdsdsdsATEVTSKHRLLLESIISLLPAEKGSVSCSFllkllkaanilnasssskMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENINFELQEsrrsssashgsKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDpsrpppplsttstipGDDQWSIPGLKSPKSKLSTLRMKlaeddeldendlHPDGMGRTSKFKAFCALPARPKKMFSKLLSINRSSSEKN
*************************VSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLC*********QIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTH********************************KGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNIS*************************RLLLESIISLLPAEKGSVSCSFLLKLLKAANILNA******ELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFK***********************************************KVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGG**********AL*********************************************************************AFCAL**********************
*KF***GSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLC***********VQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPS*********************************WAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRN********************SKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFK************************************************VAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQA*******************************************************************************************************************
********RPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRL**********QIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPS*************DDIS**************GWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNH**************SKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFK**********************RSAENINFEL*************KLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTSKFKAFCALPARPKKMFSKLLS*********
*****LGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSL*H*********************ASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNI**********************TSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFKLQGQS*************************************HGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKM*E********************************DQWSIPGLKS*KSKLSTLRMKLA*********************KAFCALPARPKKMF*KLLS*********
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MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTSKFKAFCALPARPKKMFSKLLSINRSSSEKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query629 2.2.26 [Sep-21-2011]
Q9C9V6631 BTB/POZ domain-containing yes no 0.984 0.980 0.768 0.0
Q9LIM6588 BTB/POZ domain-containing no no 0.807 0.863 0.575 1e-168
O80970634 BTB/POZ domain-containing no no 0.912 0.905 0.432 1e-132
Q9FIK1559 BTB/POZ domain-containing no no 0.771 0.867 0.448 1e-129
Q0WL52580 BTB/POZ domain-containing no no 0.796 0.863 0.422 1e-121
Q9FN09579 BTB/POZ domain-containing no no 0.753 0.818 0.445 1e-121
Q8H1D3571 BTB/POZ domain-containing no no 0.737 0.812 0.430 1e-115
O64814481 BTB/POZ domain-containing no no 0.705 0.923 0.422 1e-108
Q9FMF5746 Root phototropism protein no no 0.809 0.682 0.371 1e-104
Q5KS50762 Coleoptile phototropism p no no 0.801 0.661 0.366 3e-98
>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1 Back     alignment and function desciption
 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/640 (76%), Positives = 556/640 (86%), Gaps = 21/640 (3%)

Query: 1   MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSES 60
           MKFMKLGSRPDTFYTSE +R +SSEVSSD  I+V G+RYLLHKFPLLSKCLRLQR+CSES
Sbjct: 1   MKFMKLGSRPDTFYTSEDLRCVSSEVSSDFTIEVSGSRYLLHKFPLLSKCLRLQRMCSES 60

Query: 61  PESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGN 120
           PES    I+QLP+FPGG++AFELCAKFCYGITIT+SAYNIVAARCAAEYLQM+E+VEKGN
Sbjct: 61  PES----IIQLPEFPGGVEAFELCAKFCYGITITISAYNIVAARCAAEYLQMSEEVEKGN 116

Query: 121 LIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSL 180
           L+YK+EVFFNSCIL+GWRDSIVTLQ+TKAFPLWSEDL ITSRCIEAIASKVL+HPSKVSL
Sbjct: 117 LVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCIEAIASKVLSHPSKVSL 176

Query: 181 SHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLV 240
           SHS+SRR RDD       S R  AS++GWWAED+AELGIDLYWRTMIAIKSGGK+P++L+
Sbjct: 177 SHSHSRRVRDD----DMSSNRAAASSRGWWAEDIAELGIDLYWRTMIAIKSGGKVPASLI 232

Query: 241 GEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVS 300
           G+AL++YAS+WLP + RN ++   +       S T+ +SKHRLLLESIISLLPAEKG+VS
Sbjct: 233 GDALRVYASKWLPTLQRNRKVVKKKEDSDSD-SDTDTSSKHRLLLESIISLLPAEKGAVS 291

Query: 301 CSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMT 360
           CSFLLKLLKAANILNAS+SSKMELARRVALQLEEATVSDLLIP +SY S+ LYDVDIV T
Sbjct: 292 CSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLLIPPMSYKSELLYDVDIVAT 351

Query: 361 ILEQFKLQGQ-SPPTSPPRSKLGF--ERRRSRSAENINFELQESRRSSSASHGSKLKVAK 417
           ILEQF +QGQ SPPTSP R K G    RRRSRSAENI+ E QESRRSSSASH SKLKVAK
Sbjct: 352 ILEQFMVQGQTSPPTSPLRGKKGMMDRRRRSRSAENIDLEFQESRRSSSASHSSKLKVAK 411

Query: 418 LVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRL 477
           LVDGYLQ+IA+DVNLPLSKF+T+AESVPEFSRLDHDDLYRAIDIYLKAH +LNK ERKR+
Sbjct: 412 LVDGYLQQIARDVNLPLSKFVTLAESVPEFSRLDHDDLYRAIDIYLKAHKNLNKSERKRV 471

Query: 478 CRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGG----KMTELPSNIKAL 533
           CR+LDCKKLSMEACMHAA+NE+LPLRVVVQVLF+EQARA  A        TELPSNIKAL
Sbjct: 472 CRVLDCKKLSMEACMHAAQNEMLPLRVVVQVLFYEQARAAAATNNGEKNTTELPSNIKAL 531

Query: 534 LAGHGIDPSRP-PPPLSTTSTIPG-DDQWSIPGLKSPKSKLS-TLRMKLAEDDELDENDL 590
           LA H IDPS P     STT++I   +D+WS+ GLKSPKSKLS TLR KLAED+E+DE  +
Sbjct: 532 LAAHNIDPSNPNAAAFSTTTSIAAPEDRWSVSGLKSPKSKLSGTLRSKLAEDEEVDERFM 591

Query: 591 HPDGMGRT-SKFKAFCALPARPKKMFSKLLSINRSSSEKN 629
           + DG GRT S+FKAFCA+P RPKKMFSKLLSINR+SS+KN
Sbjct: 592 NGDG-GRTPSRFKAFCAIPGRPKKMFSKLLSINRNSSDKN 630
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LIM6|Y3649_ARATH BTB/POZ domain-containing protein At3g26490 OS=Arabidopsis thaliana GN=At3g26490 PE=1 SV=1 Back     alignment and function description
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1 Back     alignment and function description
>sp|Q0WL52|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function description
>sp|O64814|NPY4_ARATH BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query629
359473103630 PREDICTED: BTB/POZ domain-containing pro 1.0 0.998 0.828 0.0
224100147628 predicted protein [Populus trichocarpa] 0.998 1.0 0.848 0.0
147784174619 hypothetical protein VITISV_019664 [Viti 0.982 0.998 0.812 0.0
255578335631 signal transducer, putative [Ricinus com 1.0 0.996 0.855 0.0
449434981627 PREDICTED: BTB/POZ domain-containing pro 0.996 1.0 0.810 0.0
449530925627 PREDICTED: BTB/POZ domain-containing pro 0.996 1.0 0.809 0.0
357485631636 BTB/POZ domain-containing protein [Medic 1.0 0.988 0.803 0.0
356526761634 PREDICTED: BTB/POZ domain-containing pro 0.998 0.990 0.779 0.0
356567678632 PREDICTED: BTB/POZ domain-containing pro 0.996 0.992 0.787 0.0
356501807636 PREDICTED: BTB/POZ domain-containing pro 1.0 0.988 0.778 0.0
>gi|359473103|ref|XP_002282444.2| PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1083 bits (2801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/630 (82%), Positives = 585/630 (92%), Gaps = 1/630 (0%)

Query: 1   MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSES 60
           MKFMKLGSRPDTFYT+EAVRS+SSE+SSDLI+QVKG+RY+LHKFPLLSKCLRLQRLCSE 
Sbjct: 1   MKFMKLGSRPDTFYTTEAVRSVSSEISSDLIVQVKGSRYMLHKFPLLSKCLRLQRLCSEF 60

Query: 61  PESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGN 120
            ES+Q QIVQLPDFPGG+DAFELCAKFCYGITITLSA+NIV+ARCAAEYLQMTEDVEKGN
Sbjct: 61  HESAQPQIVQLPDFPGGVDAFELCAKFCYGITITLSAFNIVSARCAAEYLQMTEDVEKGN 120

Query: 121 LIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSL 180
           LIYK+EVFFNSCILHGW+DSIVTLQSTK++PLWSEDLGITSRCIEAIAS+VL+HPSKV+L
Sbjct: 121 LIYKLEVFFNSCILHGWKDSIVTLQSTKSYPLWSEDLGITSRCIEAIASRVLSHPSKVNL 180

Query: 181 SHSYSRRGRDDIS-CNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNL 239
           SHSYSRRGRDD+S CNG ES RH+  +KGWWAED+AELGIDLYWRT+IAIKSGGK+PSNL
Sbjct: 181 SHSYSRRGRDDLSSCNGTESLRHRPVSKGWWAEDIAELGIDLYWRTIIAIKSGGKVPSNL 240

Query: 240 VGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSV 299
           +G+ALKIYASRWLPNIS++G I    ASD DSDS  E+TSKHR LLESI+SLLPAEKG+V
Sbjct: 241 IGDALKIYASRWLPNISKDGTIMKRAASDPDSDSIGEITSKHRFLLESIVSLLPAEKGAV 300

Query: 300 SCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVM 359
           SCSFLLKLLKAANIL ASSSSKMELARRV +QLEEATV+DLLIP LSYT+DTLYD+DIVM
Sbjct: 301 SCSFLLKLLKAANILKASSSSKMELARRVGIQLEEATVNDLLIPSLSYTNDTLYDLDIVM 360

Query: 360 TILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLV 419
            ILEQF LQGQSPP +PPR K  FE+RRSRSAEN++F  QESRRSSSASH SKL+VAKLV
Sbjct: 361 IILEQFMLQGQSPPITPPRVKGSFEKRRSRSAENVDFGFQESRRSSSASHSSKLRVAKLV 420

Query: 420 DGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCR 479
           DGYLQEIA+DVNLPLSK I +AE+VP+F+RLDHDDLYRAIDIYLKAHPDL+K ERKRLCR
Sbjct: 421 DGYLQEIARDVNLPLSKMIALAEAVPDFARLDHDDLYRAIDIYLKAHPDLSKSERKRLCR 480

Query: 480 ILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGI 539
           ILDCKKLS+EACMHAA+NELLPLRVVVQVLFFEQARA MAGG++TELP+NIKALLA H +
Sbjct: 481 ILDCKKLSVEACMHAAQNELLPLRVVVQVLFFEQARAAMAGGQVTELPNNIKALLATHNV 540

Query: 540 DPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTS 599
           DPSRPP PLSTT+T+  +DQWSI GLKSPKS LSTLRMKLAEDD+L+END+HPDG+GR+S
Sbjct: 541 DPSRPPAPLSTTTTVAAEDQWSISGLKSPKSSLSTLRMKLAEDDDLEENDIHPDGIGRSS 600

Query: 600 KFKAFCALPARPKKMFSKLLSINRSSSEKN 629
           K KA C++P RPK+M SKL SINRS+SEKN
Sbjct: 601 KLKALCSIPTRPKRMLSKLWSINRSASEKN 630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100147|ref|XP_002311763.1| predicted protein [Populus trichocarpa] gi|222851583|gb|EEE89130.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147784174|emb|CAN63893.1| hypothetical protein VITISV_019664 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578335|ref|XP_002530034.1| signal transducer, putative [Ricinus communis] gi|223530450|gb|EEF32334.1| signal transducer, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434981|ref|XP_004135274.1| PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530925|ref|XP_004172442.1| PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357485631|ref|XP_003613103.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355514438|gb|AES96061.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356526761|ref|XP_003531985.1| PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Glycine max] Back     alignment and taxonomy information
>gi|356567678|ref|XP_003552044.1| PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Glycine max] Back     alignment and taxonomy information
>gi|356501807|ref|XP_003519715.1| PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query629
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.984 0.980 0.706 1.7e-231
TAIR|locus:2079296588 AT3G26490 [Arabidopsis thalian 0.807 0.863 0.544 1.8e-148
TAIR|locus:2160877559 AT5G47800 [Arabidopsis thalian 0.553 0.622 0.455 2.3e-114
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.516 0.561 0.439 2.4e-106
TAIR|locus:2045314481 NPY4 "NAKED PINS IN YUC MUTANT 0.397 0.519 0.460 5.6e-101
TAIR|locus:2120125580 NPY5 "NAKED PINS IN YUC MUTANT 0.406 0.441 0.470 1.2e-100
TAIR|locus:2116752571 ENP "ENHANCER OF PINOID" [Arab 0.518 0.570 0.425 1.4e-97
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.411 0.347 0.440 1.7e-90
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.802 0.759 0.379 3.4e-84
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.535 0.557 0.366 1.1e-82
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2233 (791.1 bits), Expect = 1.7e-231, P = 1.7e-231
 Identities = 452/640 (70%), Positives = 510/640 (79%)

Query:     1 MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSES 60
             MKFMKLGSRPDTFYTSE +R +SSEVSSD  I+V G+RYLLHKFPLLSKCLRLQR+CSES
Sbjct:     1 MKFMKLGSRPDTFYTSEDLRCVSSEVSSDFTIEVSGSRYLLHKFPLLSKCLRLQRMCSES 60

Query:    61 PESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGN 120
             PES    I+QLP+FPGG++AFELCAKFCYGITIT+SAYNIVAARCAAEYLQM+E+VEKGN
Sbjct:    61 PES----IIQLPEFPGGVEAFELCAKFCYGITITISAYNIVAARCAAEYLQMSEEVEKGN 116

Query:   121 LIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSL 180
             L+YK+EVFFNSCIL+GWRDSIVTLQ+TKAFPLWSEDL ITSRCIEAIASKVL+HPSKVSL
Sbjct:   117 LVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCIEAIASKVLSHPSKVSL 176

Query:   181 SHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLV 240
             SHS+SRR RDD       S R  AS++GWWAED+AELGIDLYWRTMIAIKSGGK+P++L+
Sbjct:   177 SHSHSRRVRDD----DMSSNRAAASSRGWWAEDIAELGIDLYWRTMIAIKSGGKVPASLI 232

Query:   241 GEALKIYASRWLPNISRNGRINNHEAXXXXXXXATEVTSKHRLLLESIISLLPAEKGSVS 300
             G+AL++YAS+WLP + RN ++   +         T+ +SKHRLLLESIISLLPAEKG+VS
Sbjct:   233 GDALRVYASKWLPTLQRNRKVVKKKEDSDSDSD-TDTSSKHRLLLESIISLLPAEKGAVS 291

Query:   301 CSFXXXXXXXXXXXXXXXXXXMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMT 360
             CSF                  MELARRVALQLEEATVSDLLIP +SY S+ LYDVDIV T
Sbjct:   292 CSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLLIPPMSYKSELLYDVDIVAT 351

Query:   361 ILEQFKLQGQ-SPPTSPPRSKLGF--ERRRSRSAENINFELQEXXXXXXXXXXXKLKVAK 417
             ILEQF +QGQ SPPTSP R K G    RRRSRSAENI+ E QE           KLKVAK
Sbjct:   352 ILEQFMVQGQTSPPTSPLRGKKGMMDRRRRSRSAENIDLEFQESRRSSSASHSSKLKVAK 411

Query:   418 LVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRL 477
             LVDGYLQ+IA+DVNLPLSKF+T+AESVPEFSRLDHDDLYRAIDIYLKAH +LNK ERKR+
Sbjct:   412 LVDGYLQQIARDVNLPLSKFVTLAESVPEFSRLDHDDLYRAIDIYLKAHKNLNKSERKRV 471

Query:   478 CRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMA---GGK-MTELPSNIKAL 533
             CR+LDCKKLSMEACMHAA+NE+LPLRVVVQVLF+EQARA  A   G K  TELPSNIKAL
Sbjct:   472 CRVLDCKKLSMEACMHAAQNEMLPLRVVVQVLFYEQARAAAATNNGEKNTTELPSNIKAL 531

Query:   534 LAGHGIDXXX--XXXXXXXXXXXXGDDQWSIPGLKSPKSKLS-TLRMKXXXXXXXXXXXX 590
             LA H ID                  +D+WS+ GLKSPKSKLS TLR K            
Sbjct:   532 LAAHNIDPSNPNAAAFSTTTSIAAPEDRWSVSGLKSPKSKLSGTLRSKLAEDEEVDERFM 591

Query:   591 HPDGMGRT-SKFKAFCALPARPKKMFSKLLSINRSSSEKN 629
             + DG GRT S+FKAFCA+P RPKKMFSKLLSINR+SS+KN
Sbjct:   592 NGDG-GRTPSRFKAFCAIPGRPKKMFSKLLSINRNSSDKN 630
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160877 AT5G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045314 NPY4 "NAKED PINS IN YUC MUTANTS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116752 ENP "ENHANCER OF PINOID" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9V6Y1790_ARATHNo assigned EC number0.76870.98410.9809yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VIII000795
hypothetical protein (628 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query629
pfam03000249 pfam03000, NPH3, NPH3 family 1e-119
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 7e-05
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  353 bits (907), Expect = e-119
 Identities = 140/285 (49%), Positives = 179/285 (62%), Gaps = 36/285 (12%)

Query: 207 KGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEA 266
           + WW ED++EL IDL+ R + A+KS G +   ++GEAL  YA +WLP +SR         
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRG-VKPEVIGEALMHYAKKWLPGLSR--------- 50

Query: 267 SDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELAR 326
                 S  +   + R LLE+I+SLLP+EKGSVSCSFL KLL+AA IL AS S + EL R
Sbjct: 51  ---SGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELER 107

Query: 327 RVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFKLQGQSPPTSPPRSKLGFERR 386
           R+ LQL++AT+ DLLIP      +TLYDVD+V  ILE F  +  +               
Sbjct: 108 RIGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLSRDAA--------------- 152

Query: 387 RSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPE 446
                        +    +S S  S LKVAKLVDGYL EIA D NL LSKFI +AE+VP+
Sbjct: 153 --------TQSSDDEDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPD 204

Query: 447 FSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEAC 491
            +R  HD LYRAIDIYLKAHP+L++ E+KRLCR++DC+KLS EAC
Sbjct: 205 SARPSHDGLYRAIDIYLKAHPNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 629
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.88
PHA02790480 Kelch-like protein; Provisional 99.86
PHA02713557 hypothetical protein; Provisional 99.85
PHA03098534 kelch-like protein; Provisional 99.77
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.67
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.57
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.12
KOG4350620 consensus Uncharacterized conserved protein, conta 99.02
KOG4591280 consensus Uncharacterized conserved protein, conta 98.65
KOG4682488 consensus Uncharacterized conserved protein, conta 98.34
KOG07831267 consensus Uncharacterized conserved protein, conta 98.14
KOG07831267 consensus Uncharacterized conserved protein, conta 98.02
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.67
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.61
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.32
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.96
KOG3473112 consensus RNA polymerase II transcription elongati 93.93
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.33
KOG2838401 consensus Uncharacterized conserved protein, conta 92.77
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 92.15
KOG3840438 consensus Uncharaterized conserved protein, contai 82.78
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1e-89  Score=700.65  Aligned_cols=258  Identities=55%  Similarity=0.863  Sum_probs=226.0

Q ss_pred             CCchhhhhhccChhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcCCcccCCCCCCCcCCCCCCCchhhhhHhHHHHHH
Q 006846          207 KGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLE  286 (629)
Q Consensus       207 ~dWW~eDl~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~YA~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llE  286 (629)
                      +|||||||+.|++|+|+|||.+|+++|+. +++||++|++||+||||+..+......     ...........+||.+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~-~~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llE   74 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMK-PEVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLE   74 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHH
Confidence            58999999999999999999999999986 489999999999999999865421111     111112336779999999


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhcccccccccccCCCCCCCccccHHHHHHHHHHHH
Q 006846          287 SIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFK  366 (629)
Q Consensus       287 tiV~LLP~ek~svsc~FL~~LLr~A~~l~as~~cr~~LerRIg~qLd~AtldDLLIPs~~~~~~tlYDVD~V~ril~~Fl  366 (629)
                      +||+|||.+|++|||+|||+|||+|+++++|.+||.+||+|||+|||||||+|||||+.....+|+||||+|+|||++||
T Consensus        75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl  154 (258)
T PF03000_consen   75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFL  154 (258)
T ss_pred             HHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999993334369999999999999999


Q ss_pred             hcCCCCCCCCCCCcccccccccccccchhhhhhhhhcCCCCCchhHHHHHhhHHHhhhhhccCCCCChhhHHHHHHhcCC
Q 006846          367 LQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPE  446 (629)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~r~~r~~~~~~~e~~~~~~~~~~~~~~l~~VakLvD~YLaEIA~D~nL~~sKF~~LAe~lPd  446 (629)
                      .+.+.....                     +..+....++++..++.+||||||+||+|||+|+||+|+||++|||++|+
T Consensus       155 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~  213 (258)
T PF03000_consen  155 SQEEEAGEE---------------------EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPD  213 (258)
T ss_pred             hcccccccc---------------------cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCH
Confidence            986542111                     11111223456788999999999999999999999999999999999999


Q ss_pred             CCcccccchhHHHHHHHHhCCCCcHHHHhhhhcccccCCCCHHHh
Q 006846          447 FSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEAC  491 (629)
Q Consensus       447 ~aR~~hDgLYRAIDiYLK~Hp~ls~~Er~~lCr~ldc~KLS~eAc  491 (629)
                      +||++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus       214 ~aR~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  214 SARPSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             hhhhccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query629
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.7 bits (141), Expect = 5e-09
 Identities = 75/569 (13%), Positives = 180/569 (31%), Gaps = 169/569 (29%)

Query: 2   KFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSK--------CLRL 53
           KF++   R +  +    +++   + S    + ++    L +   + +K         L+L
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 54  QR-LCSESPESSQHQIVQLPDFPG-G--------IDAFELCAKFCYGIT-ITLSAYNIVA 102
           ++ L    P     + V +    G G          ++++  K  + I  + L   N   
Sbjct: 141 RQALLELRP----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--- 193

Query: 103 ARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI---------LHGWRDSIVTLQSTKAFP-- 151
                  L+M +      L+Y+I+  + S           +H  +  +  L  +K +   
Sbjct: 194 --SPETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 152 ------LWSEDLGITSRCIEA--IASKVL--THPSKVSLSHSYSRRGRDDISCNGAESQR 201
                 + +      ++   A  ++ K+L  T   +V+          D +S   A +  
Sbjct: 247 LLVLLNVQN------AKAWNAFNLSCKILLTTRFKQVT----------DFLS---AATTT 287

Query: 202 HKASTKGWWAEDMAE-LGIDLYWRTMIAIKSGGKIPS----------NLVGEALKIYASR 250
           H +           E   + L +           +P           +++ E+++   + 
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 251 WLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKA 310
           W          +N +  + D            ++  S+  L PAE          K+   
Sbjct: 344 W----------DNWKHVNCD--------KLTTIIESSLNVLEPAE--------YRKMFDR 377

Query: 311 ANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYT---------SDTLYDVDIVM-- 359
            ++   S+     L   +   + ++ V  ++     Y+         + ++  + + +  
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 360 ----------TILEQFKLQGQSPPT--SPPR------SKLGFERRRSRSAE--------- 392
                     +I++ + +          PP       S +G   +     E         
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 393 -NINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLD 451
            +  F  Q+ R  S+A + S         G +    + +      +I   ++ P++ RL 
Sbjct: 498 LDFRFLEQKIRHDSTAWNAS---------GSILNTLQQLKF-YKPYIC--DNDPKYERLV 545

Query: 452 HDDLYRAIDIYLKAHPDLNKCERKRLCRI 480
            + +   +D   K   +L   +   L RI
Sbjct: 546 -NAI---LDFLPKIEENLICSKYTDLLRI 570
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query629
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.85
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.84
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.84
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.84
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.83
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.83
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.83
2vpk_A116 Myoneurin; transcription regulation, transcription 99.83
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.82
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.81
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.8
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.76
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.74
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.37
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.15
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.07
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.85
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.29
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.21
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.18
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.63
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.47
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.65
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.21
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.88
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 91.37
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 90.15
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 89.92
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.85  E-value=5.9e-22  Score=201.13  Aligned_cols=227  Identities=12%  Similarity=0.116  Sum_probs=160.2

Q ss_pred             eeeccCCceeEEEEEc---CEEEEecccccccCCHHHHHhhcCCCCCCCCceeecC------CCCCCHHHHHHHHHHhhc
Q 006846           20 RSISSEVSSDLIIQVK---GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP------DFPGGIDAFELCAKFCYG   90 (629)
Q Consensus        20 ~~~~~~~lcDV~I~V~---g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~------d~pGGaeaFell~~FcYg   90 (629)
                      .++.+|.+|||+|.||   |+.|++||.+|+++|+||++||++...+....+|.|+      +++  +++|+.+++|+||
T Consensus        25 ~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Yt  102 (279)
T 3i3n_A           25 EQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYT  102 (279)
T ss_dssp             HHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCc
Confidence            3678899999999998   9999999999999999999999987554444789998      564  7999999999999


Q ss_pred             CccccchhhHHHHHHhHhhcCcchhhccccHHHHHHHHHHHhhhccchhHHHHhhcCCchhHhhHHhCc---hhHHHHHH
Q 006846           91 ITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI---TSRCIEAI  167 (629)
Q Consensus        91 ~~i~it~~NV~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~~v~~sw~dsia~L~sC~~L~~~Ae~l~i---v~rcidsi  167 (629)
                      |++.++..||..++.||++|||++      |+..|+.||.+.+.+         .+|..++.+|+.+++   .+.|.+-|
T Consensus       103 g~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i  167 (279)
T 3i3n_A          103 GRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMI  167 (279)
T ss_dssp             SEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999999999999999985      789999999998855         477778888888773   44555555


Q ss_pred             HHHhccCCCCCcCccccCCCCCCCCCCCCCcccccCCCCCCchhhhhhccChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006846          168 ASKVLTHPSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIY  247 (629)
Q Consensus       168 A~ka~~d~~~~~~s~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~eDl~~L~idlf~rVi~amk~~g~~~~~~Ig~al~~Y  247 (629)
                      +.....    +                              +-.+++..|+.+....++..-. -.+..+..|-.+    
T Consensus       168 ~~~f~~----v------------------------------~~~~~f~~L~~~~l~~lL~~d~-L~v~sE~~vf~a----  208 (279)
T 3i3n_A          168 RRNFHK----V------------------------------IQDEEFYTLPFHLIRDWLSDLE-ITVDSEEVLFET----  208 (279)
T ss_dssp             HHTHHH----H------------------------------TTSSGGGGSCHHHHHHHHTCSS-CCCSCHHHHHHH----
T ss_pred             HHHHHH----H------------------------------hcCcChhcCCHHHHHHHhcCcC-CCCCCHHHHHHH----
Confidence            432210    0                              0014666788888777765321 112223344444    


Q ss_pred             HHHhcCCcccCCCCCCCcCCCCCCCchhhhhHhHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 006846          248 ASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEK-GSVSCSFLLKLLKAANILNASSSSKMELAR  326 (629)
Q Consensus       248 A~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~LLP~ek-~svsc~FL~~LLr~A~~l~as~~cr~~Ler  326 (629)
                      +.+|+-+-                      ....+..+   ..||..=| ..+|..+|..+++..-.+..++.|+.-|..
T Consensus       209 v~~W~~~~----------------------~~~r~~~~---~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~e  263 (279)
T 3i3n_A          209 VLKWVQRN----------------------AEERERYF---EELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVAD  263 (279)
T ss_dssp             HHHHHHTT----------------------HHHHTTTH---HHHHTTSCGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcC----------------------HHHHHHHH---HHHHHhcCCCCCCHHHHHHHhhccchhcCCHHHHHHHHH
Confidence            45665320                      01111222   33444333 348999999999888888899999887654


Q ss_pred             H
Q 006846          327 R  327 (629)
Q Consensus       327 R  327 (629)
                      -
T Consensus       264 a  264 (279)
T 3i3n_A          264 A  264 (279)
T ss_dssp             H
T ss_pred             H
Confidence            3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 629
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-08
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-06
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 23  SSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFE 82
           S ++ +D++I V   ++  HK  L++       + ++  + +   I   P+     + F 
Sbjct: 21  SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP--EGFN 78

Query: 83  LCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEK 118
           +   F Y   + L   NI+A    A YLQM   V+ 
Sbjct: 79  ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query629
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.85
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.39
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 96.94
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.14
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.08
d1t1da_100 Shaker potassium channel {California sea hare (Apl 93.56
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.17
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 83.0
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.9e-22  Score=176.17  Aligned_cols=103  Identities=21%  Similarity=0.316  Sum_probs=93.5

Q ss_pred             eeccCCceeEEEEEcCEEEEecccccccCCHHHHHhhcCCCCCCCCceeecCCCCCCHHHHHHHHHHhhcCccccchhhH
Q 006846           21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI  100 (629)
Q Consensus        21 ~~~~~~lcDV~I~V~g~~F~lHK~vLas~S~YFr~Lft~~~~~~~~~~V~L~d~pGGaeaFell~~FcYg~~i~it~~NV  100 (629)
                      ++.+|.+|||+|.|+|++|++||.+|+++|+||++||.+...++....+.+++++  +++|+.+++|+|||++.++.+||
T Consensus        19 l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~~~v   96 (122)
T d1r29a_          19 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGNI   96 (122)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCeecCchhhH
Confidence            6788999999999999999999999999999999999887655553456667886  79999999999999999999999


Q ss_pred             HHHHHhHhhcCcchhhccccHHHHHHHHHHH
Q 006846          101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNS  131 (629)
Q Consensus       101 ~~L~cAA~~LqMte~~~~gNLi~~ce~FL~~  131 (629)
                      ..++.||++|||.+      |++.|+.||+.
T Consensus        97 ~~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          97 MAVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            99999999999995      89999999985
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure