Citrus Sinensis ID: 007004

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW
cccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHcccHHHHHHcccEEEccccccccccccCEEEEEcccHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHccccccccccEEEEEcEEEECccccEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHcccc
*******************QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVH***************LLEEHDPLWLELRHAHIADASERLHEKMTS***********************DLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGG***********FSLKFD*****************TWQLSRFYPMIEELIEKLGKRELPKDDYPC*******************************************************PIGFIICRFIISCTVDLFLLILLPVW
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MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
SNARE-interacting protein KEULE Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.confidentQ9C5X3
Probable protein transport Sec1b Involved in the vesicle trafficking. Binds syntaxins.probableQ5VNU3
Probable protein transport Sec1a Involved in the vesicle trafficking. Binds syntaxins.probableQ7XWP3

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XHE, chain A
Confidence level:very confident
Coverage over the Query: 16-211,223-485,496-556,600-618
View the alignment between query and template
View the model in PyMOL
Template: 1MQS, chain A
Confidence level:very confident
Coverage over the Query: 14-211,225-348,363-482,494-550,565-581,595-618
View the alignment between query and template
View the model in PyMOL