Citrus Sinensis ID: 007004

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW
cccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHcccHHHHHHcccEEEccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHccccccccccEEEEEcEEEEEccccEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHcccc
ccccccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHcHHHHHHcccEEEEcccccccccccccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEccccHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHEEHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHccccHHcccccccccEEHccccHHHHHHHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHcccc
msysdsdsssyggdyknfKQISRERLLYEMLRSAktgtskstWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIhrrrqplpsmeaiyfiqpTKENVIMFLsdmsgrsplyKKAFVFFSSPISRELVTHikkdstvlprigaLREMNLeyfaidsqgfvtdDERALEELfgdeensrrgdACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSienfpqtetcdllildrsvdqvapIIHEWTYDAICRDLLNMEgnkyvhevpsktggppekkevllEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHsardggelsTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFttnedvsrENKLRLLMILAAIypekfqgekgQNIMKLARLqsdditavnnmrllggasdikksstgafslkfdinkkkravrkdrtgeeqtwqLSRFYPMIEELIEKLgkrelpkddypcmnepsptvhaknqsaaisqppvahsmrsrrtptwarprnsddgysrccccsslhrpigFIICRFIISCTVDLFLLILLPVW
msysdsdsssyggdyknfkQISRERLLYEMLRsaktgtskstwkvLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRElvthikkdstvlpRIGALREMNLEYFAIDSQGFVTDDERALEElfgdeensrrgDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVhevpsktggppeKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFfttnedvsrenKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLggasdikksstgafslkfdinkkkravrkdrtgeeqtwqlsrfyPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAisqppvahsmrsrrtptwarprnsddgysRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW
MsysdsdsssyggdyKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIrelrlrelgqleqdlVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW
*******************QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELF********GDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVH***************LLEEHDPLWLELRHAHIA*******************************************LPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGG***********FSLKFD*****************TWQLSRFYPMIEELIEKL******************************************************GYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPV*
*******************QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWN***************ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYV*****************LEEHDPLWLELRHAHIADASERLHEKMTS***********************DLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLG***********************************TWQLSRFYPMIEELIEKLGKRELPKDDYPC**********************************************************FIICRFIISCTVDLFLLILLPVW
************GDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHE*********EKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFIS*****************STKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKK***********QTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPS***************************************SRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW
*************DYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHS*****ELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDI****TGAFSLKFD******A****RTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMN*****************************************************PIGFIICRFIISCTVDLFLLILLPVW
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MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLILLPVW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query622 2.2.26 [Sep-21-2011]
Q9C5X3666 SNARE-interacting protein yes no 0.958 0.894 0.788 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.913 0.858 0.703 0.0
Q7XWP3665 Probable protein transpor yes no 0.922 0.863 0.675 0.0
Q9C5P7673 Protein transport Sec1a O no no 0.890 0.823 0.670 0.0
Q5VNU3659 Probable protein transpor yes no 0.926 0.874 0.601 0.0
Q54QC8598 Protein transport protein yes no 0.821 0.854 0.307 1e-62
Q64324593 Syntaxin-binding protein yes no 0.792 0.831 0.307 3e-62
Q15833593 Syntaxin-binding protein yes no 0.782 0.821 0.308 3e-62
Q62753594 Syntaxin-binding protein yes no 0.778 0.814 0.312 4e-62
Q28288593 Syntaxin-binding protein yes no 0.790 0.829 0.3 2e-61
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/604 (78%), Positives = 536/604 (88%), Gaps = 8/604 (1%)

Query: 11  YGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGV 70
           +GG+YKNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGV
Sbjct: 11  HGGEYKNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGV 70

Query: 71  SLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVT 130
           SLVEDI RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV 
Sbjct: 71  SLVEDIFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVG 130

Query: 131 HIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMAS 190
           HIKKDS+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMAS
Sbjct: 131 HIKKDSSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMAS 190

Query: 191 RIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQT 250
           RIATVFASLREFP VRYRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQT
Sbjct: 191 RIATVFASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQT 250

Query: 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEE 310
           ETC+LLILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEE
Sbjct: 251 ETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEE 310

Query: 311 HDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQ 370
           HDP+WLELRHAHIADASERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQ
Sbjct: 311 HDPIWLELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQ 369

Query: 371 YSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRE 430
           YS+QIDKLSLHVEIA K+N +IRE  LRELGQLEQDLVFGDAG+KDV+K+ +T E+ SRE
Sbjct: 370 YSEQIDKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASRE 429

Query: 431 NKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFS 490
            KLRLLMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+
Sbjct: 430 GKLRLLMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFT 489

Query: 491 LKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVH 550
           LKFD++KKKRAVRK+R  EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H
Sbjct: 490 LKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFH 548

Query: 551 A---KNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCC---CSSLHRPIGFIICR 604
                + +A+ SQ   A SMRSRRTPTWA+PR SDDGYS        SS  R +G  I  
Sbjct: 549 GSTSLSSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFV 608

Query: 605 FIIS 608
           FI+ 
Sbjct: 609 FIVG 612
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
224071599666 predicted protein [Populus trichocarpa] 0.963 0.899 0.805 0.0
224125086666 predicted protein [Populus trichocarpa] 0.953 0.890 0.817 0.0
356514152665 PREDICTED: SNARE-interacting protein KEU 0.961 0.899 0.775 0.0
357477033666 SNARE-interacting protein KEULE [Medicag 0.959 0.896 0.777 0.0
356563274666 PREDICTED: SNARE-interacting protein KEU 0.961 0.897 0.770 0.0
225448938 753 PREDICTED: SNARE-interacting protein KEU 0.975 0.806 0.779 0.0
356563276671 PREDICTED: SNARE-interacting protein KEU 0.961 0.891 0.764 0.0
297844098665 hypothetical protein ARALYDRAFT_471384 [ 0.958 0.896 0.786 0.0
255537107663 plant sec1, putative [Ricinus communis] 0.950 0.891 0.795 0.0
18391384666 SNARE-interacting protein KEULE [Arabido 0.958 0.894 0.788 0.0
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/603 (80%), Positives = 542/603 (89%), Gaps = 4/603 (0%)

Query: 10  SYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEG 69
           +YGGDY+NF+QISRERLL+EMLRSAKTG SKSTWKVLIMD+LTVKIMS+SCKMADITQEG
Sbjct: 11  AYGGDYRNFRQISRERLLHEMLRSAKTGNSKSTWKVLIMDRLTVKIMSYSCKMADITQEG 70

Query: 70  VSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELV 129
           VSLVEDI+RRRQPLPSM+AIYFIQPTKENVIMFLSDM+G+SPLYKKAFVFFSSPISRELV
Sbjct: 71  VSLVEDIYRRRQPLPSMDAIYFIQPTKENVIMFLSDMAGKSPLYKKAFVFFSSPISRELV 130

Query: 130 THIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMA 189
           +HIKKDS+VL RIGALREMNLEYFAIDSQGF+TD+ERALEELFGD+E+S +GDACLNVMA
Sbjct: 131 SHIKKDSSVLTRIGALREMNLEYFAIDSQGFITDNERALEELFGDDEDSHKGDACLNVMA 190

Query: 190 SRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ 249
           SRIATVFASLREFP VR+RAA+SLD  TMTT  DLIPTKLAA +W+ L +YKQ IENFPQ
Sbjct: 191 SRIATVFASLREFPFVRFRAARSLDVTTMTTSRDLIPTKLAARIWDSLTQYKQKIENFPQ 250

Query: 250 TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLE 309
           TETC+LLILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVHEVP K GGPPEKKEVLLE
Sbjct: 251 TETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKAGGPPEKKEVLLE 310

Query: 310 EHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALP 369
           EHDP+WLELRHAHIA ASERLHEKMT+F+SKNKAA+IQH +RDGGELST+DLQ+MVQALP
Sbjct: 311 EHDPVWLELRHAHIAFASERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALP 370

Query: 370 QYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSR 429
           QYS+QIDKLSLHVEIAGKIN+IIREL LRELGQLEQDLVFGDAG+KDV+KF T  ED +R
Sbjct: 371 QYSEQIDKLSLHVEIAGKINRIIRELGLRELGQLEQDLVFGDAGMKDVIKFLTMKEDTTR 430

Query: 430 ENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489
           ENKLRLLMILAA++PEK +GE+G NIMKLARL  DD+ AVNNMRLL GASD KK STGAF
Sbjct: 431 ENKLRLLMILAAVFPEKLEGERGLNIMKLARLPQDDMNAVNNMRLLAGASDTKKRSTGAF 490

Query: 490 SLKFDINKKKRAVRKDRTGEEQ-TWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPT 548
           SLKFDI+KKKRA RKDRTGEE+ TWQLSRFYPMIEELI+KL K EL KD+YPCMN+PSP+
Sbjct: 491 SLKFDIHKKKRAARKDRTGEEETTWQLSRFYPMIEELIDKLNKGELSKDEYPCMNDPSPS 550

Query: 549 VHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCC---CSSLHRPIGFIICRF 605
            H  +QS  +   P  HSMRS+RTPTWARPRNSDDGYS        SS  + +G  I  F
Sbjct: 551 FHGTSQSTPMHHVPAPHSMRSKRTPTWARPRNSDDGYSSDSILRHASSDFKKMGQRIFVF 610

Query: 606 IIS 608
           I+ 
Sbjct: 611 IVG 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297844098|ref|XP_002889930.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] gi|297335772|gb|EFH66189.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255537107|ref|XP_002509620.1| plant sec1, putative [Ricinus communis] gi|223549519|gb|EEF51007.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18391384|ref|NP_563905.1| SNARE-interacting protein KEULE [Arabidopsis thaliana] gi|150421587|sp|Q9C5X3.2|KEULE_ARATH RecName: Full=SNARE-interacting protein KEULE gi|110743380|dbj|BAE99577.1| hypothetical protein [Arabidopsis thaliana] gi|332190749|gb|AEE28870.1| SNARE-interacting protein KEULE [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.948 0.885 0.769 1.1e-245
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.909 0.854 0.684 1.6e-212
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.900 0.832 0.651 1.9e-202
UNIPROTKB|F1P3H1592 STXBP3 "Uncharacterized protei 0.485 0.510 0.341 2.9e-60
UNIPROTKB|O00186592 STXBP3 "Syntaxin-binding prote 0.519 0.545 0.322 9.8e-50
UNIPROTKB|E7EQD5604 STXBP2 "Syntaxin-binding prote 0.684 0.705 0.305 1.2e-49
MGI|MGI:107370593 Stxbp2 "syntaxin binding prote 0.699 0.733 0.301 1.5e-49
UNIPROTKB|Q5RE92593 DKFZp469D0239 "Putative unchar 0.692 0.726 0.301 3.2e-49
UNIPROTKB|Q15833593 STXBP2 "Syntaxin-binding prote 0.694 0.728 0.301 4.1e-49
UNIPROTKB|Q28288593 STXBP2 "Syntaxin-binding prote 0.699 0.733 0.295 4.1e-49
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2367 (838.3 bits), Expect = 1.1e-245, P = 1.1e-245
 Identities = 460/598 (76%), Positives = 518/598 (86%)

Query:    16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVED 75
             KNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGVSLVED
Sbjct:    16 KNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGVSLVED 75

Query:    76 IHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD 135
             I RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV HIKKD
Sbjct:    76 IFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKD 135

Query:   136 STVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATV 195
             S+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMASRIATV
Sbjct:   136 SSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATV 195

Query:   196 FASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDL 255
             FASLREFP VRYRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQTETC+L
Sbjct:   196 FASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCEL 255

Query:   256 LILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLW 315
             LILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEEHDP+W
Sbjct:   256 LILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIW 315

Query:   316 LELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQI 375
             LELRHAHIADASERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQYS+QI
Sbjct:   316 LELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQI 374

Query:   376 DKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRL 435
             DKLSLHVEIA K+N +I               VFGDAG+KDV+K+ +T E+ SRE KLRL
Sbjct:   375 DKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRL 434

Query:   436 LMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDI 495
             LMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+LKFD+
Sbjct:   435 LMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDL 494

Query:   496 NKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAK--- 552
             +KKKRAVRK+R  EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H     
Sbjct:   495 HKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSL 553

Query:   553 NQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCC---CSSLHRPIGFIICRFII 607
             + +A+ SQ   A SMRSRRTPTWA+PR SDDGYS        SS  R +G  I  FI+
Sbjct:   554 SSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIV 611
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3H1 STXBP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O00186 STXBP3 "Syntaxin-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQD5 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107370 Stxbp2 "syntaxin binding protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RE92 DKFZp469D0239 "Putative uncharacterized protein DKFZp469D0239" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q15833 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q28288 STXBP2 "Syntaxin-binding protein 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54QC8SEC1_DICDINo assigned EC number0.30750.82150.8545yesno
Q9SZ77SEC1B_ARATHNo assigned EC number0.70330.91310.8580nono
Q7XWP3SEC1A_ORYSJNo assigned EC number0.67520.92280.8631yesno
Q5VNU3SEC1B_ORYSJNo assigned EC number0.60130.92600.8740yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.78800.95810.8948yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
pfam00995554 pfam00995, Sec1, Sec1 family 1e-129
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 3e-50
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  390 bits (1005), Expect = e-129
 Identities = 153/533 (28%), Positives = 273/533 (51%), Gaps = 31/533 (5%)

Query: 43  WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMF 102
           WKVL++DK T KI+S    ++D+ + GV+LVE+I  +R+PLP + AIYFI+PT+ENV   
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRI 60

Query: 103 LSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVT 162
           + D+  ++P YK   +FF++ +SR L+  + + + V   +  ++E+ L++  ++S  F  
Sbjct: 61  IDDL--KNPKYKSYHIFFTNSLSRSLLERLAE-ADVAELVKQVKEIYLDFIPLESDLFSL 117

Query: 163 DDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFS 222
           +   +  +L+    +    ++ L  +A  + ++  +L E P++RY+             +
Sbjct: 118 ELPNSFRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNS---------AA 164

Query: 223 DLIPTKLAAGVWNCLMKYKQSIENFP-QTETCDLLILDRSVDQVAPIIHEWTYDAICRDL 281
           + +  KLA  +   L  +     + P       LLILDRS+D + P++H+WTY A+  DL
Sbjct: 165 ERLAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDL 224

Query: 282 LNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKN 341
           L ++ N+    + +   G   KKEV+L+E+DP W+E RH H  D +E++ +++  +  +N
Sbjct: 225 LGIKNNRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEEN 282

Query: 342 KAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELG 401
           K +  +       + S  DL++ V+ LP++  +  KLSLH+ +A ++ K I+E +L ++ 
Sbjct: 283 KNSNKK-------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVS 335

Query: 402 QLEQDLVFGDAGLKDVVKFFT--TNEDVSRENKLRLLMILAAIYPEK-FQGEKGQNIMKL 458
           +LEQDL  G    K          N  V  E+KLRLL++ +     K    E  + ++  
Sbjct: 336 ELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDGGKGKDLEDLRKLLLH 395

Query: 459 ARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRF 518
           A +  + +  V N+  LGG   + ++S   FS   D  K           +     LSR+
Sbjct: 396 AGIGPEALNLVKNLEQLGGL--LSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRY 453

Query: 519 YPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRR 571
            P+++ ++E L K +L  D YP  +           S    +P  A   R   
Sbjct: 454 KPLLKRILEDLIKGKLDTDSYPYFDPKLANASGPQGSLRSKRPTAAGQGRQPP 506

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 622
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.5e-117  Score=937.40  Aligned_cols=542  Identities=42%  Similarity=0.661  Sum_probs=478.5

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCCH
Q 007004           17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK   96 (622)
Q Consensus        17 sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt~   96 (622)
                      +|+++++++|+.++++ +.+   .++|||||+|+.+++|+|+||+|++++++|||+||+|+++|+|+|+|+|||||+|+.
T Consensus         2 ~l~~l~~~kil~~v~~-~~k---~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~   77 (593)
T KOG1300|consen    2 GLKELVKKKILEDVLR-VEK---KGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE   77 (593)
T ss_pred             chHHHHHHHHHHHhcc-cCC---CCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence            5899999999999988 432   358999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCCCC
Q 007004           97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE  176 (622)
Q Consensus        97 ~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~~~  176 (622)
                      ++|+|++.||+.+.|+|++|||||++.||+++++.|.+ +.+.+.|++++|+|++|+|+|+|+|+++.|++|..+|++. 
T Consensus        78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~-  155 (593)
T KOG1300|consen   78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD-  155 (593)
T ss_pred             hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence            99999999998667899999999999999999999985 5678899999999999999999999999999999999976 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCCCCCeeEE
Q 007004          177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL  256 (622)
Q Consensus       177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p~~~~~~Ll  256 (622)
                      +.+....+++.+|.+|++||++||+||.|||++.....+       +.+|.++|+.+++.++.|+...+++|..++|.||
T Consensus       156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl  228 (593)
T KOG1300|consen  156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL  228 (593)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence            567778899999999999999999999999998865443       2689999999999999999767788888899999


Q ss_pred             EecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHHHHHH
Q 007004          257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTS  336 (622)
Q Consensus       257 IlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~~~~~  336 (622)
                      |+||++|++|||||+||||||+|||++|+||+|.|+++..+|+  ++|+++|+++|++|.++||+||+||++.|++++++
T Consensus       229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~  306 (593)
T KOG1300|consen  229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN  306 (593)
T ss_pred             EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998655553  37899999999999999999999999999999999


Q ss_pred             HHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC-CCHH
Q 007004          337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD-AGLK  415 (622)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~-~~~~  415 (622)
                      |.++|+.++.     +++..|++||++||++||||+|++++|++|++||++||+.++. +|.+++.+||||++|. ..++
T Consensus       307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~  380 (593)
T KOG1300|consen  307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE  380 (593)
T ss_pred             HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence            9999975432     3446899999999999999999999999999999999999977 9999999999999994 3332


Q ss_pred             -------HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccCcCCCC
Q 007004          416 -------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGA  488 (622)
Q Consensus       416 -------~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~~~~~~  488 (622)
                             .+++++. +.++...||+|+|++|.+. ++|+.++++.+|++|.|++.+++.++.|++.+|....++.     
T Consensus       381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~~-----  453 (593)
T KOG1300|consen  381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKDS-----  453 (593)
T ss_pred             cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccCc-----
Confidence                   3444554 5689999999999999997 5899999999999999999999999999999999887532     


Q ss_pred             CCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCcccCcc
Q 007004          489 FSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMR  568 (622)
Q Consensus       489 ~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~~s~r  568 (622)
                      |..+     ..++.+|+|. .+.+|++|||+|.|++|||++++|+||+++|||+++++...++.          +++|+|
T Consensus       454 ~~~k-----~~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~----------~~~Sar  517 (593)
T KOG1300|consen  454 FLLK-----FDPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS----------AATSAR  517 (593)
T ss_pred             cccc-----CCCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC----------cccccc
Confidence            2222     2233367775 78999999999999999999999999999999999998432211          236666


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhh
Q 007004          569 SRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLL  616 (622)
Q Consensus       569 ~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~  616 (622)
                      +   ++|++.+....           .+++|||+||||+||+|.+|+-
T Consensus       518 ~---~~~~~~k~~~~-----------~~~~g~ri~VfIiGGvT~SEmR  551 (593)
T KOG1300|consen  518 Y---GHPLSNKTPSA-----------FKKPGQRIIVFIIGGVTFSEMR  551 (593)
T ss_pred             c---cCcccccCcch-----------hhccCceEEEEEeCCccHHHHH
Confidence            5   46776665421           4678999999999999999984

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 6e-57
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 1e-55
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 1e-55
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 9e-53
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 3e-51
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 2e-47
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 6e-23
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 1e-08
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (556), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 158/540 (29%), Positives = 278/540 (51%), Gaps = 43/540 (7%)
Query: 18  FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVEDI+
Sbjct: 3   LKTAVHEKIMNDVVLAVK---KNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 59
Query: 78  RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 60  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 118
Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
           T    I  L+E+N+ +   +SQ F  D      +++ +   ++ G       A +IAT+ 
Sbjct: 119 TTARFIKTLKEINIAFLPYESQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLC 177
Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256
           A+L E+P VRYR+    D     +F+ L+  KL A   +       ++   PQ +   LL
Sbjct: 178 ATLGEYPSVRYRS----DFDENASFAQLVQQKLDAYRAD-----DPTMGEGPQKDRSQLL 228
Query: 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEHDPL 314
           ILDR  D ++P++HE T+ A+  DLL +E + Y +     TGG   PE KEVLL+E D L
Sbjct: 229 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKY---VNTGGNEVPE-KEVLLDEKDDL 284
Query: 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQ 374
           W+E+RH HIA  S+ + +K+  F  + +       A        KDL +M++ +PQY  +
Sbjct: 285 WVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKE 338
Query: 375 IDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAG-------LKDVVKFFTTNEDV 427
           + K S H+ +A    K                 +  DA        ++++V     ++ +
Sbjct: 339 LSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL-LDQKI 397
Query: 428 SRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG 487
           S  +K+R+++ L  I+      E    +++ A + +++   +N+M+ L G   I+     
Sbjct: 398 SAYDKIRIIL-LYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNL-GVPIIQDGGRR 455
Query: 488 AFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSP 547
                +  +      RK+R   + T+Q+SR+ P +++++E   + +L    YP +N   P
Sbjct: 456 KIPQPYHTHN-----RKERQA-DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGP 509
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-109
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 8e-99
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 5e-96
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 9e-96
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 6e-93
1y9j_A159 SEC1 family domain containing protein 1; membrane 6e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  342 bits (878), Expect = e-109
 Identities = 139/579 (24%), Positives = 280/579 (48%), Gaps = 42/579 (7%)

Query: 15  YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVE 74
           + + K   +  L    LRS   G     WKVL++DK  ++++S   +M++I   GV++VE
Sbjct: 1   HMSLKSAVKTVLT-NSLRSVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVE 56

Query: 75  DIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK 134
           D+ ++R+ LP    +YFI+PT+EN+   + D + R+P Y+ A +FF SP+   L+  +  
Sbjct: 57  DVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS 116

Query: 135 DSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIAT 194
            +  +  +  L+E+N  +   + + F  ++   L + +G   +S      ++ +  R++T
Sbjct: 117 -AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSS----YNIDHLVRRLST 171

Query: 195 VFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCD 254
           +  ++   P+VRY +  +  T  M   +  +  ++   V   L+  ++            
Sbjct: 172 LCTTMNVAPIVRYSSTSTPGTERM---AMQLQKEIDMSVSQGLINAREG------KLKSQ 222

Query: 255 LLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPL 314
            LILDR+VD  +P++HE TY A   DLLN+E + Y +      GG  ++++V+L E D +
Sbjct: 223 FLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDI 281

Query: 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQ 374
           WL++RH HI++   ++      F    +  Q    ++  GE     L++M++ LPQ+ +Q
Sbjct: 282 WLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQ-GEGGAGALKQMLKDLPQHREQ 340

Query: 375 IDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFT-------TNEDV 427
           + K SLH++++  IN       +    + EQ++V  +    + V+ F         +  V
Sbjct: 341 MQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRV 399

Query: 428 SRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG 487
           S E+KLR LM+   +        +  N++  A + +   +A+ N+ +LG      +    
Sbjct: 400 STEDKLRCLMLC-VLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR---- 454

Query: 488 AFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSP 547
                    + ++     R   +  + LSR+ P++++L+E +   +L  + YP + +   
Sbjct: 455 ---------RGRKPKTMKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPS 505

Query: 548 TVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYS 586
            V  K  S ++ +     +  +R+   WA+ + ++    
Sbjct: 506 VVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLP 544
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.96
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=8.2e-109  Score=929.24  Aligned_cols=537  Identities=30%  Similarity=0.536  Sum_probs=448.9

Q ss_pred             hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCC
Q 007004           16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT   95 (622)
Q Consensus        16 ~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt   95 (622)
                      ++|++++|++|+++||+++++   .++|||||+|+.+++|||+||++++|+++||++||+|+++|+|+|+++|||||+||
T Consensus         4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt   80 (594)
T 1dn1_A            4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS   80 (594)
T ss_dssp             CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred             hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence            579999999999889999864   35799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCC
Q 007004           96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD  174 (622)
Q Consensus        96 ~~~i~~i~~d~~~-~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~  174 (622)
                      .+||++|++||++ ..++|++|||||++.||+.+++.|++ .++.+.|+++.|+++||+|+|+++|||++|++|..+|++
T Consensus        81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~  159 (594)
T 1dn1_A           81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP  159 (594)
T ss_dssp             HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred             HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence            9999999999974 13699999999999999999999997 478899999999999999999999999999999999996


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCC---CCC
Q 007004          175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE  251 (622)
Q Consensus       175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p---~~~  251 (622)
                      +++ ......++.+|++|+++|.++|++|.|||+|+.            ..|+++|+.|+++|++|..++++++   ...
T Consensus       160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~  226 (594)
T 1dn1_A          160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA  226 (594)
T ss_dssp             GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred             ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence            542 345778999999999999999999999999873            2478899999999999887665543   234


Q ss_pred             CeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHH
Q 007004          252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH  331 (622)
Q Consensus       252 ~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~  331 (622)
                      +++|||+||++|++|||+||||||||+||+|||++|+|+++.+.  .+..++|++.|+++|++|.++||+||++|++.|.
T Consensus       227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~  304 (594)
T 1dn1_A          227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT  304 (594)
T ss_dssp             GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred             CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence            78999999999999999999999999999999999999998632  2234568899999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 007004          332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD  411 (622)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~  411 (622)
                      +++++|+++++..       ..+..|++||++||++||+|+++++.+++|++||++|++.+++ .|.+++++||+|++|.
T Consensus       305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~  376 (594)
T 1dn1_A          305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT  376 (594)
T ss_dssp             HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred             HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence            9999999876421       1245688999999999999999999999999999999999987 8999999999999986


Q ss_pred             CC--------HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccC
Q 007004          412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK  483 (622)
Q Consensus       412 ~~--------~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~  483 (622)
                      +.        .+.++++|. +++++.+|||||+|||++++ +|++++++.+|++++|++.+++.+|.||+++|+...++.
T Consensus       377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~  454 (594)
T 1dn1_A          377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS  454 (594)
T ss_dssp             CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred             CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence            42        245667776 56899999999999999987 699999999999999999999999999999998876432


Q ss_pred             cCCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCc
Q 007004          484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV  563 (622)
Q Consensus       484 ~~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~  563 (622)
                      ..          .|.+++.++++ +.+++|++|||+|+++++||++++|+||+++|||++++++...+          .+
T Consensus       455 ~~----------~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~----------~~  513 (594)
T 1dn1_A          455 TL----------RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS----------TT  513 (594)
T ss_dssp             GG----------GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred             cc----------ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc----------cc
Confidence            10          12233444554 56899999999999999999999999999999999987642110          01


Q ss_pred             ccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhh
Q 007004          564 AHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLI  617 (622)
Q Consensus       564 ~~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~  617 (622)
                      ++|+   |+|+||+.+++.            +.++|||+||||+||+||+|.-.
T Consensus       514 ~~s~---r~~~w~~~~~~~------------~~~~~~riivFivGG~Ty~E~r~  552 (594)
T 1dn1_A          514 AVSA---RYGHWHKNKAPG------------EYRSGPRLIIFILGGVSLNEMRC  552 (594)
T ss_dssp             ---------------------------------CCCCEEEEEEETCEEHHHHHH
T ss_pred             cccc---ccccccccCCcc------------ccccCCcEEEEEeCCccHHHHHH
Confidence            2344   557999876542            23579999999999999999754
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 622
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-123
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-119
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-115
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  374 bits (960), Expect = e-123
 Identities = 158/578 (27%), Positives = 285/578 (49%), Gaps = 52/578 (8%)

Query: 18  FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVEDI+
Sbjct: 2   LKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 58

Query: 78  RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 59  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 117

Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
           T    I  L+E+N+ +   +SQ F  D     +  + +   ++ G       A +IAT+ 
Sbjct: 118 TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYY-NPSRAQGGIPNKERCAEQIATLC 176

Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256
           A+L E+P VRYR+    D     +F+ L+  KL     +       ++   PQ +   LL
Sbjct: 177 ATLGEYPSVRYRS----DFDENASFAQLVQQKL-----DAYRADDPTMGEGPQKDRSQLL 227

Query: 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWL 316
           ILDR  D ++P++HE T+ A+  DLL +E + Y  +  +  G    +KEVLL+E D LW+
Sbjct: 228 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVY--KYVNTGGNEVPEKEVLLDEKDDLWV 285

Query: 317 ELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQID 376
           E+RH HIA  S+ + +K+  F  + +            +   KDL +M++ +PQY  ++ 
Sbjct: 286 EMRHQHIAVVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELS 339

Query: 377 KLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTT-------NEDVSR 429
           K S H+ +A    K  ++  + +L ++EQDL  G     + ++           ++ +S 
Sbjct: 340 KYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISA 398

Query: 430 ENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489
            +K+R++++   I+      E    +++ A + +++   +N+M+ LG             
Sbjct: 399 YDKIRIILLY-IIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIP 457

Query: 490 SLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTV 549
                 N+K+R         + T+Q+SR+ P +++++E   + +L    YP +N   P  
Sbjct: 458 QPYHTHNRKER-------QADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR- 509

Query: 550 HAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSR 587
                       P      S R   W + +      S 
Sbjct: 510 ------------PSCQQPVSVRYGHWHKDKGQASYKSG 535
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

Probab=100.00  E-value=1.6e-92  Score=800.56  Aligned_cols=542  Identities=28%  Similarity=0.505  Sum_probs=439.4

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCCH
Q 007004           17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK   96 (622)
Q Consensus        17 sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt~   96 (622)
                      |||+++|+++++++|++|+++   ++|||||+|+.+.+|||++|++++|+++||++|+.|+++|+|+|+++|||||+||.
T Consensus         1 ~~~~~~~~~~l~~~~~~v~~~---~~wKvLi~D~~t~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~   77 (590)
T d1epua_           1 ALKTAVHEKIMNDVVLAVKKN---AEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTE   77 (590)
T ss_dssp             CHHHHHHHHHHHHTHHHHCSS---SCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCH
T ss_pred             ChHHHHHHHHHHHHHHhcCCC---CCcEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEECCCH
Confidence            599999999998899999743   57999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCCC
Q 007004           97 ENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE  175 (622)
Q Consensus        97 ~~i~~i~~d~~~-~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~~  175 (622)
                      +||++|++||+. ..++|+.|||+|++.+++.++++|++ .++.+.|.+|.|+++||+|+|+++|||++|++|..+|++.
T Consensus        78 eni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~l~~la~-~~~~~~i~~i~e~~~df~~l~~~lfsl~~~~~~~~~~~~~  156 (590)
T d1epua_          78 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS  156 (590)
T ss_dssp             HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHH-STTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred             HHHHHHHHHhhhhhcccCceEEEEECCCCCHHHHHHHHh-ccccccCCeEEEEecceEeCCCCEEEecCCcHHHHhcCcc
Confidence            999999999974 34789999999999999999999997 4788999999999999999999999999999999999754


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCC---CCC
Q 007004          176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET  252 (622)
Q Consensus       176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p~---~~~  252 (622)
                      . .......++.+|++|+++|.++|++|.|||+|+.            ..|..+|+.|+++|+.+.++++.++.   .++
T Consensus       157 ~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~~~~~a~~v~~~l~~~~~~~~~~~~~~~~~~  223 (590)
T d1epua_         157 R-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADDPTMGEGPQKDR  223 (590)
T ss_dssp             G-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHTS
T ss_pred             h-hhcchhHHHHHHHHHHHHHHHcCCCCeEEEeCCc------------hHHHHHHHHHHHHHHHHhhcCccccCCCCCCC
Confidence            3 2233568999999999999999999999999874            24678999999999998887665543   347


Q ss_pred             eeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHH
Q 007004          253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE  332 (622)
Q Consensus       253 ~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~  332 (622)
                      ++|||+||++|++|||+||||||||+||+|||++|+|+++.  ..++..+++++.+++.|++|.++||+||++|++.|.+
T Consensus       224 ~~LiIlDR~~DliTPLlh~~TYqaLi~e~~~I~~n~v~~~~--~~~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~  301 (590)
T d1epua_         224 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVN--TGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK  301 (590)
T ss_dssp             CEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred             ceEEEEeccccccccccccccHHHHHHHHhcccCCeeEecC--CCCCCCcceeeecCCcchHHHHHhcccHHHHHHHHHH
Confidence            89999999999999999999999999999999999998865  2333445678899999999999999999999999999


Q ss_pred             HHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC
Q 007004          333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA  412 (622)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~  412 (622)
                      ++++|+++++..      .+.+..+++||+++|++||+++++++.+++|++||++|++.+++ ++.+++++||++++|.+
T Consensus       302 ~~~~~~~~~~~~------~~~~~~~~~~l~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~i~~-~l~~~~~~Eq~i~~~~~  374 (590)
T d1epua_         302 KLKQFADEKRMG------TAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTD  374 (590)
T ss_dssp             HHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBC
T ss_pred             HHHHHHHHhhhh------ccccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence            999998876421      12345578899999999999999999999999999999999965 69999999999998853


Q ss_pred             C--------HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccCc
Q 007004          413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS  484 (622)
Q Consensus       413 ~--------~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~~  484 (622)
                      .        ..++++.+. +...+++|+|||+|||++++ +|++++++.++++..+++.+++.++.+|+.+|+...+...
T Consensus       375 ~~~~~~~~~~~~~~~~l~-~~~~~~~d~LRLl~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~  452 (590)
T d1epua_         375 ADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGG  452 (590)
T ss_dssp             TTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTT
T ss_pred             cchhhHhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhc-cCCChHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccc
Confidence            1        356777776 57889999999999999987 6899989999999999998999999999999987764322


Q ss_pred             CCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCcc
Q 007004          485 STGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA  564 (622)
Q Consensus       485 ~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~  564 (622)
                      . ..+...+      ....+...+.+..|.+|||+|++++++|.+++|+|++..||++....+.....          .+
T Consensus       453 ~-~~~~~~~------~~~~~~~~~~d~~y~~s~y~Pli~~lve~~~~~~l~~~~~~~~~~~~~~~~~~----------~~  515 (590)
T d1epua_         453 R-RKIPQPY------HTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQ----------QP  515 (590)
T ss_dssp             S-CCCCCTT------SGGGSCCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC------------------
T ss_pred             c-cccchhh------hccccccCCccccceeecchHHHHHHHHHHHhCCCCccccccccCCCCCcccc----------cc
Confidence            1 1111111      11111223668899999999999999999999999999999998765542210          12


Q ss_pred             cCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004          565 HSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL  618 (622)
Q Consensus       565 ~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~  618 (622)
                      .++|.   +.|++.+...            ...+++|+||||+||+|+.|+-.+
T Consensus       516 ~~~~~---~~~~~~~~~~------------~~~~~~~viVfvvGGvTy~Ei~~l  554 (590)
T d1epua_         516 VSVRY---GHWHKDKGQA------------SYKSGPRLIIFVVGGISYSEMRSA  554 (590)
T ss_dssp             --------------------------------CCCCEEEEEEETCBCHHHHHHH
T ss_pred             ccccc---CcccCCCCcc------------ccCCCCEEEEEEECCcCHHHHHHH
Confidence            33443   5677655432            234678999999999999998543
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure