Citrus Sinensis ID: 007021

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
cccccccccccccccccccccccCEECcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHccccccCECcccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccccccccccCECccHHHHHHHHccccccEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHccccccccccccEEEEEEEEEccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
*****************************************************WEVY**************************************************************************************I**PLEH******************************************************************************WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKT****RVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQM***NQQLIYLKNRVVKEQRHSKALEATFSIVSEK*****************************************RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLM***************
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MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Protein SUPPRESSOR OF GENE SILENCING 3 Required for post-transcriptional gene silencing and natural virus resistance. May bind nucleic acids and is essential for the biogenesis of trans-acting siRNAs but is not required for silencing induced by IR-PTGS. Involved in the juvenile-to-adult transition regulation. In case of begomoviruses infection, it is targeted by the viral protein V2 leading to suppression of post-transcriptional gene silencing.probableQ9LDX1
Protein SUPPRESSOR OF GENE SILENCING 3 Required for post-transcriptional gene silencing and natural virus resistance.probableA5YVF1
Protein SUPPRESSOR OF GENE SILENCING 3 homolog Required for post-transcriptional gene silencing and natural virus resistance.probableQ2QWE9

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4E8U, chain A
Confidence level:very confident
Coverage over the Query: 325-499
View the alignment between query and template
View the model in PyMOL
Template: 2DFS, chain A
Confidence level:probable
Coverage over the Query: 582-603
View the alignment between query and template
View the model in PyMOL
Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 503-570
View the alignment between query and template
View the model in PyMOL