Citrus Sinensis ID: 007021

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
cccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccEEEcccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEccHHHHHHHHccccccEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHccccccccccccEEEEEEEEEccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccccccccccEEEEccccccccccEcccccccHHHHcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccEccccHHHccccccccccccccEEcccEEEEEEccccccccccccccccHHHHHHHHHccHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHcccccEEEcccccEEEEEEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
msarrggkspiaagssntsvkgknvtevsnsqvdhlsgsvadisldsaqddggwEVYVRKsknkagsgttksfgsqnsnykawghldstqkpgmrgngssgrapaktwttvnadskipagrvnarpqltnwvpetnnmatqtgirpplehgwnwqsragstifkhsedghdkesgnldevhkdnveddyddekdddsnvsddsddellsdefdsdtsqkshdtrkKSRWFKKFFESLESLTVeeineparqwhcpacqggpgaidwyrglqplmthaktkgskRVKLHRELAELLDEELRRrgtsvipagevfgkwkglkdtekdheivwppmVIIMNTrldkdendkwtgmgNQELLEYFILYAAVRArhsygpqghrgmSVLIFESSAGGYLEAERLHKHFaeqgtdrdswnnsnRRVLFHAGGKRQLYGFMALKEDLdvfnqhchgktkqkfEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSianpkntedYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
msarrggkspiaagssntsvkgkNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRksknkagsgttksfgsqnsnykaWGHLDSTQKPGMrgngssgrapaktwttvnadskipagrvnarpqltnwvpetnNMATQTGIRPPLEHGWNWQSRAGSTIFKHSedghdkesgnldevhkdnveddyddekdddsnvsddsddellsdefdsdtsqkshdtrkksrwFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHaktkgskrvkLHRELAELLDeelrrrgtsvipagevfgkwkglkdtekdheivwppmVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFaeqgtdrdswnnsNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHgktkqkfemRSYHEMVVNQIRQMSEDNQQLIYLKNRvvkeqrhskaleatfsivseklreTMEENRIVKQrtkmqheqnkeevkqsianpkntedyKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHkdnveddyddekdddsnvsddsddellsdefdsdTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHrelaelldeelrrrGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
*****************************************************WEVY**********************************************************************LTNWV***********I**PLEHGWNWQ*************************************************************************WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAK******VKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFA********WNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQM***NQQLIYLKNRVVK***********************************************************RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLM***************
************************************************************************************************************************************************************************************************************************************WFKKFFESLESLTV***NEPARQWHCPACQGGPG*IDWYRGLQPLMTHAKT****RVKLHRELAELLDEELRR**********************KDHEIVWPPMVIIMNTRLDKD**********QELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNN*N*******GGKRQLYGFMALKEDLDVFNQHCHGKTKQKF*********************QLIYLKNRVVKEQRHSKALEATFSIVSEK***************************************************************************DAMRRRHWEE*VELEKGFDAELTQL****************
******************************SQVDHLSGSVADISLDSAQDDGGWEVYVRKS************GSQNSNYKAWGHLDSTQK*************AKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVE***************************************KSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHA********KLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ***************SIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
************************************SGSVADISLDSAQDDGGWEVYVRK****************************************************************************NMATQTGIRPPLEH*******************************************************ELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS***PKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY************
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MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAADSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query621 2.2.26 [Sep-21-2011]
Q9LDX1625 Protein SUPPRESSOR OF GEN yes no 0.916 0.910 0.527 1e-163
A5YVF1633 Protein SUPPRESSOR OF GEN N/A no 0.927 0.909 0.519 1e-161
A1Y2B7594 Protein SUPPRESSOR OF GEN N/A no 0.763 0.797 0.523 1e-136
Q2QWE9609 Protein SUPPRESSOR OF GEN yes no 0.795 0.811 0.510 1e-135
A2ZIW7609 Protein SUPPRESSOR OF GEN N/A no 0.795 0.811 0.506 1e-134
>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1 Back     alignment and function desciption
 Score =  576 bits (1484), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 335/635 (52%), Positives = 430/635 (67%), Gaps = 66/635 (10%)

Query: 21  KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN 79
           K KNV      +V+ L   +A   L S+QDDGG WEV  +K+KNK G+ + K++ SQNSN
Sbjct: 10  KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSN 69

Query: 80  Y-KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNM 138
             +AWG     Q+ G RG+  SGR    +         I A  ++ R +  +   + N +
Sbjct: 70  PPRAWG----GQQQG-RGSNVSGRGNNVSGRGNGNGRGIQAN-ISGRGRALSRKYDNNFV 123

Query: 139 ATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDD--EKDDD 196
           A     RPPLE GWNWQ+R GS      ++  D             VEDD D+  E+++D
Sbjct: 124 APPPVSRPPLEGGWNWQARGGSAQHTAVQEFPD-------------VEDDVDNASEEEND 170

Query: 197 SNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPA 256
           S+  DDSDD+L SD++DSD SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPA
Sbjct: 171 SDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPA 230

Query: 257 CQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKW 316
           CQ GPGAIDWY  L PL+ HA+TKG++RVKLHRELAE+L+++L+ RG SVIP GE++G+W
Sbjct: 231 CQNGPGAIDWY-NLHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQW 289

Query: 317 KGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ 376
           KGL + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF  Y A+RARHSYGPQ
Sbjct: 290 KGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQ 349

Query: 377 GHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMAL 436
           GHRGMSVL+FESSA GYLEAERLH+  AE G DR +W    +R +F +GG RQLYGF+A 
Sbjct: 350 GHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAW--GQKRSMF-SGGVRQLYGFLAT 406

Query: 437 KEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALE 496
           K+DLD+FNQH  GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE
Sbjct: 407 KQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLE 466

Query: 497 ATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEV------------------------- 531
            +  I+SEKLR T E+NRIV+QRTKMQHEQN+EE+                         
Sbjct: 467 ESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENF 526

Query: 532 --------------KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHG 577
                         +Q   NP + +D + RAEE++ FI  Q+KEMEEFV  R+ LIK   
Sbjct: 527 EMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQE 586

Query: 578 EKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 612
           +KM+ M++RH EE  +LEK FD  L QLM K+  H
Sbjct: 587 KKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621
Required for post-transcriptional gene silencing and natural virus resistance. May bind nucleic acids and is essential for the biogenesis of trans-acting siRNAs but is not required for silencing induced by IR-PTGS. Involved in the juvenile-to-adult transition regulation. In case of begomoviruses infection, it is targeted by the viral protein V2 leading to suppression of post-transcriptional gene silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1 Back     alignment and function description
>sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1 Back     alignment and function description
>sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1 Back     alignment and function description
>sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
225463205718 PREDICTED: protein SUPPRESSOR OF GENE SI 0.979 0.846 0.638 0.0
147765658 1849 hypothetical protein VITISV_043511 [Viti 0.971 0.326 0.641 0.0
255553943634 conserved hypothetical protein [Ricinus 0.959 0.940 0.609 0.0
225030812642 reduced leaflet 1 [Lotus japonicus] 0.943 0.912 0.588 0.0
356508892628 PREDICTED: protein SUPPRESSOR OF GENE SI 0.927 0.917 0.596 0.0
356516448638 PREDICTED: protein SUPPRESSOR OF GENE SI 0.956 0.931 0.590 0.0
449459200650 PREDICTED: protein SUPPRESSOR OF GENE SI 0.971 0.927 0.603 0.0
356512916645 PREDICTED: protein SUPPRESSOR OF GENE SI 0.953 0.917 0.581 0.0
357464867644 Protein SUPPRESSOR OF GENE SILENCING-lik 0.958 0.923 0.567 0.0
357464863 759 Protein SUPPRESSOR OF GENE SILENCING-lik 0.959 0.785 0.546 0.0
>gi|225463205|ref|XP_002267929.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/653 (63%), Positives = 494/653 (75%), Gaps = 45/653 (6%)

Query: 1   MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
           MS R+GG   +AAG+SN S K ++ +EV N  V+ L+  VADISLDSAQD G WEVY RK
Sbjct: 72  MSLRKGGGKQLAAGASNASPKSRHASEVPNVGVEPLNQGVADISLDSAQD-GEWEVYSRK 130

Query: 61  SKNKAGSGTTKSFGSQNSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAG 120
           SKN+AGS   KS+  QNS+ KAWG  D+ QK GMR N  SG+APA +W    ADS+ PAG
Sbjct: 131 SKNRAGSSAAKSWAPQNSSTKAWGQPDTAQKLGMRSNDGSGKAPANSWAAQTADSRKPAG 190

Query: 121 RVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED--GHDKESGNLD 178
           R N RPQ  N   E + M  Q  I PPLEHGW W +R GS     SED  G D+ + N  
Sbjct: 191 RGNVRPQSINRGLEGSYMGPQPVIPPPLEHGWKWNNRPGSI---KSEDVRGKDENNFNSY 247

Query: 179 EVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLE 238
               ++ +++  D+ DDD +V+DDSDDELLSD+FDSDTSQKSH+TRKKS+WFK FFE L+
Sbjct: 248 SADIEDDKEEDIDDNDDDVDVADDSDDELLSDDFDSDTSQKSHETRKKSKWFKSFFEILD 307

Query: 239 SLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEE 298
           SLT+EEINEPARQWHCPACQGGPGAIDWYRGLQPL+THAKTKGSKRVKLHRELAELLDEE
Sbjct: 308 SLTIEEINEPARQWHCPACQGGPGAIDWYRGLQPLITHAKTKGSKRVKLHRELAELLDEE 367

Query: 299 LRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELL 358
           L RRGTSV+PAGE FGKWKGL ++ KDHEIVWPPMVIIMNTRL++D ++KW GMGNQELL
Sbjct: 368 LYRRGTSVVPAGEAFGKWKGLYESVKDHEIVWPPMVIIMNTRLEQDADEKWIGMGNQELL 427

Query: 359 EYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNR 418
           +YF  YAAV+ARHSYGPQGHRGMSVLIFESSA GYLEAERLHKHFAEQGTDR++W+   R
Sbjct: 428 DYFSSYAAVKARHSYGPQGHRGMSVLIFESSAIGYLEAERLHKHFAEQGTDREAWD--RR 485

Query: 419 RVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQL 478
           RV F+ GGKRQLYG+MA+KEDL +FNQH  GK+K KFEMRSY EMVV+Q++QMSEDNQQL
Sbjct: 486 RVPFYPGGKRQLYGYMAIKEDLTLFNQHSQGKSKLKFEMRSYQEMVVSQMKQMSEDNQQL 545

Query: 479 IYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE-------- 530
           I+ KNRV KEQR SKA E +  IVSE+LR++M+ENRIVK+RTK+QH+++KEE        
Sbjct: 546 IWFKNRVAKEQRKSKAYEESLGIVSERLRKSMKENRIVKERTKVQHQESKEEMDFQEQFF 605

Query: 531 ----------------------------VKQSIANPKNTED-YKLRAEEIAKFITVQDKE 561
                                       VKQS  NP   ED  + R EE+AKFI  QDKE
Sbjct: 606 KEQIKVIHDARDAKEDDFEKFQQEKREKVKQSSGNPSAIEDPRRSRVEEVAKFIKFQDKE 665

Query: 562 MEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHIT 614
           ME FVA R+ LI+ H EK+ AM++RHWEEEV LEK FD EL++LMEKY++ ++
Sbjct: 666 MENFVAEREELIRAHEEKVVAMKQRHWEEEVGLEKEFDDELSKLMEKYTSDLS 718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255553943|ref|XP_002518012.1| conserved hypothetical protein [Ricinus communis] gi|223542994|gb|EEF44530.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225030812|gb|ACN79519.1| reduced leaflet 1 [Lotus japonicus] Back     alignment and taxonomy information
>gi|356508892|ref|XP_003523187.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356516448|ref|XP_003526906.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449459200|ref|XP_004147334.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Cucumis sativus] gi|449508711|ref|XP_004163389.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356512916|ref|XP_003525160.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357464867|ref|XP_003602715.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] gi|355491763|gb|AES72966.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357464863|ref|XP_003602713.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] gi|355491761|gb|AES72964.1| Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
TAIR|locus:2171716625 SGS3 "SUPPRESSOR OF GENE SILEN 0.906 0.900 0.468 1.6e-127
TAIR|locus:2114560 647 IDN2 "AT3G48670" [Arabidopsis 0.362 0.347 0.216 3.4e-06
TAIR|locus:2125078 554 AT4G01180 "AT4G01180" [Arabido 0.439 0.492 0.225 1.2e-05
TAIR|locus:2148323 561 AT5G59390 [Arabidopsis thalian 0.454 0.502 0.212 0.00015
UNIPROTKB|F1NGZ3 2417 F1NGZ3 "Uncharacterized protei 0.299 0.076 0.253 0.0002
TAIR|locus:2171716 SGS3 "SUPPRESSOR OF GENE SILENCING 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
 Identities = 278/593 (46%), Positives = 359/593 (60%)

Query:    21 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQNSNY 80
             K KNV      +V+ L   +A   L S+QDDGG E  V   KNK   G T      + N 
Sbjct:    10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGG-EWEVISKKNKNKPGNTSGKTWVSQNS 68

Query:    81 KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMAT 140
                      Q+ G RG+  SGR    +    N + +     ++ R +  +   + N +A 
Sbjct:    69 NP-PRAWGGQQQG-RGSNVSGRGNNVSGRG-NGNGRGIQANISGRGRALSRKYDNNFVAP 125

Query:   141 QTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHXXXXXXXXXXXXXXXXXXX 200
                 RPPLE GWNWQ+R GS      ++  D E    D+V                    
Sbjct:   126 PPVSRPPLEGGWNWQARGGSAQHTAVQEFPDVE----DDVDNASEEENDSDALDDSDDDL 181

Query:   201 XXXXXXXXXXXXXXXTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGG 260
                             SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPACQ G
Sbjct:   182 ASDDYDSD-------VSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPACQNG 234

Query:   261 PGAIDWYRGLQPLMTHAKTKGSKRVKLHXXXXXXXXXXXXXXGTSVIPAGEVFGKWKGLK 320
             PGAIDWY  L PL+ HA+TKG++RVKLH              G SVIP GE++G+WKGL 
Sbjct:   235 PGAIDWYN-LHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQWKGLG 293

Query:   321 DTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRG 380
             + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF  Y A+RARHSYGPQGHRG
Sbjct:   294 EDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQGHRG 353

Query:   381 MSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDL 440
             MSVL+FESSA GYLEAERLH+  AE G DR +W    +R +F +GG RQLYGF+A K+DL
Sbjct:   354 MSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDL 410

Query:   441 DVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFS 500
             D+FNQH  GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE +  
Sbjct:   411 DIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEESLE 470

Query:   501 IVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS----IANPKNTEDYKLRAEEIAKFIT 556
             I+SEKLR T E+NRIV+QRTKMQHEQN+EE+       + + K   + +   EE   F  
Sbjct:   471 IMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEE--NFEM 528

Query:   557 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF-DAELTQLMEK 608
             +Q +E  + V  + + I  +    D  R+R   EEV     F + E+ + +E+
Sbjct:   529 LQQQERAKVVGQQQQNI--NPSSNDDCRKR--AEEVSSFIEFQEKEMEEFVEE 577
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0009616 "virus induced gene silencing" evidence=RCA;IMP
GO:0010050 "vegetative phase change" evidence=RCA;IMP
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP
GO:0051607 "defense response to virus" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0010025 "wax biosynthetic process" evidence=IGI
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGZ3 F1NGZ3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDX1SGS3_ARATHNo assigned EC number0.52750.91620.9104yesno
A5YVF1SGS3_SOLLCNo assigned EC number0.51980.92750.9099N/Ano
Q2QWE9SGS3_ORYSJNo assigned EC number0.51010.79540.8111yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003647001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (555 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032651001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (1197 aa)
    • • 0.456

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 6e-38
pfam03468116 pfam03468, XS, XS domain 2e-12
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 7e-07
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information 
 Score =  135 bits (342), Expect = 6e-38
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 6/113 (5%)

Query: 328 IVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFE 387
           IVWP M I+ NT   KD+  K  GMGN+ELLE    +   R +  YG QGH G +++ F 
Sbjct: 1   IVWPWMGILANTPTTKDDERKMEGMGNKELLERLRKFNPTRVKPLYGYQGHTGFAIVEFA 60

Query: 388 SSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDL 440
               G+ +A RL KHFA+ G  +  W           G KR+LYG++A ++D 
Sbjct: 61  KDWSGFRDALRLEKHFAKDGRGKKDWIG------KKGGRKRKLYGWLAREDDY 107

This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important. . Length = 107
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 621
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.41
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.91
PF14988206 DUF4515: Domain of unknown function (DUF4515) 94.77
COG3883265 Uncharacterized protein conserved in bacteria [Fun 93.9
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 93.06
PF13851201 GAS: Growth-arrest specific micro-tubule binding 92.76
PRK11637 428 AmiB activator; Provisional 92.37
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 87.89
PRK11637 428 AmiB activator; Provisional 87.12
PRK12705 508 hypothetical protein; Provisional 87.12
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 85.91
PF05667 594 DUF812: Protein of unknown function (DUF812); Inte 83.49
KOG1265 1189 consensus Phospholipase C [Lipid transport and met 83.03
COG5185 622 HEC1 Protein involved in chromosome segregation, i 82.07
PF1425970 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or 81.77
KOG0163 1259 consensus Myosin class VI heavy chain [Cytoskeleto 80.22
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=8.1e-45  Score=328.75  Aligned_cols=115  Identities=39%  Similarity=0.763  Sum_probs=86.9

Q ss_pred             CCceeecCCeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHH
Q 007021          324 KDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHF  403 (621)
Q Consensus       324 kDdliVWPWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhF  403 (621)
                      +|++|||||||||+||+|+++++|+++|+|+++|+++|+.|+|++|+||||+.||+|++||+|++||+||+||++||+||
T Consensus         1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F   80 (116)
T PF03468_consen    1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF   80 (116)
T ss_dssp             ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence            58999999999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCc
Q 007021          404 AEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQ  445 (621)
Q Consensus       404 e~qg~GRkdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~d~  445 (621)
                      +.++|||+||.  +++.     .+++||||||++|||++.++
T Consensus        81 ~~~~~Gr~dW~--~~~~-----~~~~lYGw~A~~dD~~~~~~  115 (116)
T PF03468_consen   81 EAQGHGRKDWE--RRRG-----GGSQLYGWVARADDYNSPGP  115 (116)
T ss_dssp             HHTT-SHHHHT---SSS--------S-EEEE-BHHHHHSSSH
T ss_pred             HHcCCCHHHHh--hccC-----CCCceeeeeCchhhccCCCC
Confidence            99999999998  4443     48999999999999999876

SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14988 DUF4515: Domain of unknown function (DUF4515) Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF14259 RRM_6: RNA recognition motif (a Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 2e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-05
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  160 bits (406), Expect = 2e-46
 Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 13/178 (7%)

Query: 321 DTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFIL--YAAVRARHSYGPQGH 378
           D + D ++V+P   I++N    K ++ +  G    +L + +IL  +   R R  +   GH
Sbjct: 2   DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGH 61

Query: 379 RGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKE 438
            G +++ F     G        K +   G  +  W   +       G K  LYG++A  +
Sbjct: 62  SGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKD-------GPKLGLYGWIARAD 114

Query: 439 DLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALE 496
           D +  N       ++  ++++  E+   + R+       +  L+  V ++++  K +E
Sbjct: 115 DYNGNNII-GENLRKTGDLKTIAELTEEEARKQ---ELLVQNLRQLVEEKKKDMKEIE 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 90.93
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 89.98
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 89.41
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 86.94
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 85.61
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 84.65
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 84.36
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 84.09
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 84.06
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 83.95
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 83.62
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 83.36
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 83.34
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 83.33
2hgn_A139 Heterogeneous nuclear ribonucleoprotein F; RNA rec 83.21
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 82.51
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 80.65
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 80.4
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 80.13
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=4.4e-60  Score=451.41  Aligned_cols=167  Identities=20%  Similarity=0.367  Sum_probs=157.4

Q ss_pred             CCCCceeecCCeEEEeccccccCCCCcccccChHHHHHHh--hccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHH
Q 007021          322 TEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYF--ILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL  399 (621)
Q Consensus       322 ~~kDdliVWPWmGII~Nt~te~dddgr~~G~s~~eL~d~l--sgF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rL  399 (621)
                      ++++++|||||||||+||+|+.+++|+++|||+++|+++|  ++|+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus         3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f   82 (172)
T 4e8u_A            3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF   82 (172)
T ss_dssp             ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence            6789999999999999999987788999999999999977  89999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCccccccc-ccccccccHHHHHHHHhhhcchhhhHH
Q 007021          400 HKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQL  478 (621)
Q Consensus       400 ekhFe~qg~GRkdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~d~~siGe~-rkkgdLKSisEmv~E~~R~m~k~nklv  478 (621)
                      |+||+.++|||+||.  .++.     .+++||||||++|||++.++  ||+| ||+|+||||+||++|..|   +++++|
T Consensus        83 ek~Fe~~~~GK~dW~--~~~~-----~~~~lyGW~Ar~dDy~s~~~--iG~~Lrk~gdLKTv~~i~~E~~r---k~~~lv  150 (172)
T 4e8u_A           83 DKAYTVDGHGKKDWL--KKDG-----PKLGLYGWIARADDYNGNNI--IGENLRKTGDLKTIAELTEEEAR---KQELLV  150 (172)
T ss_dssp             HHHHHHTTCSHHHHT--CSSS-----CCCSCEEEECBHHHHHSSSH--HHHHHHTTCEEEEHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHcCCCHHHHh--hCCC-----CCCceEEEecccccccCCCh--HHHHHHHcCCcccHHHHHHHHHH---HHHHHH
Confidence            999999999999998  5444     48999999999999999998  9999 999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHh
Q 007021          479 IYLKNRVVKEQRHSKALEATFS  500 (621)
Q Consensus       479 ~~L~nqIe~knk~lqeLE~k~n  500 (621)
                      ++|+|+|++||++|++||++||
T Consensus       151 ~~L~~~ie~kn~~l~ele~k~~  172 (172)
T 4e8u_A          151 QNLRQLVEEKKKDMKEIEELCS  172 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999986
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 93.91
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 92.53
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 89.69
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 89.04
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 87.93
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 86.56
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 85.46
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 85.31
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 85.3
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 84.98
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 84.04
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 82.62
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 81.47
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 81.18
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 81.09
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.91  E-value=0.034  Score=43.24  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHH
Q 007021          333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHK  401 (621)
Q Consensus       333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLek  401 (621)
                      ++.|-|+|.         ..+.++|++.|+.|+++. ++.+.++.+.+|++.|+|.. -..-..|+.++.
T Consensus         2 tv~V~nlp~---------~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~-~~~a~~Al~~~~   61 (75)
T d2ghpa2           2 TVLVKNLPK---------SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITKTH   61 (75)
T ss_dssp             EEEEEEECT---------TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTTTT
T ss_pred             EEEEECCCC---------CCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcc-hHHhHHHHHhcC
Confidence            477888864         236889999999999985 77888999999999999954 555566665533
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure