Citrus Sinensis ID: 007047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLVP
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHcccccEEEEccHHHHHHHccccccccccEEEEEcccccHHHHHHHHHcccEEEEHHHHHHccccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccccEEcccccEEEEEcccccccccccEEEcHHHHHHHHHccccccEEEEEEcccccEEEEEEEccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEccccEEccHHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHccccccHHHEEEEEEcc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPceedtkkwaysnghagSFLELCSLVQLQNYILSELKNAAERNKVIFanwdtgcfslvp
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFAnwdtgcfslvp
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLVP
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSL**
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLVP
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLVP
Disordered Region (DISPRO)
*KIFAAQVEEGK*GKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	620	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.977	0.918	0.694	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.975	0.908	0.500	0.0
Q9T009	666	Long chain acyl-CoA synth	no	no	0.975	0.908	0.495	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.972	0.906	0.493	1e-176
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.966	0.900	0.465	1e-160
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.880	0.778	0.412	1e-106
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.882	0.781	0.390	1e-103
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.940	0.866	0.350	1e-103
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.898	0.835	0.368	6e-99
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.890	0.808	0.350	5e-93

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/606 (69%), Positives = 507/606 (83%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct: 541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query: 601 AERNKV 606
           AE+NK+
Sbjct: 601 AEKNKL 606

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/605 (50%), Positives = 421/605 (69%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKV 606
           +  K+
Sbjct: 605 KEKKM 609

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/605 (49%), Positives = 408/605 (67%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct: 545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query: 602 ERNKV 606
           + NK+
Sbjct: 605 KENKL 609

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/604 (49%), Positives = 411/604 (68%), Gaps = 1/604 (0%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query: 543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
           E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct: 546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query: 603 RNKV 606
             K+
Sbjct: 606 DKKL 609

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/601 (46%), Positives = 384/601 (63%), Gaps = 2/601 (0%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
            + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
           VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct: 551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query: 606 V 606
           +
Sbjct: 611 L 611

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/563 (41%), Positives = 318/563 (56%), Gaps = 17/563 (3%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT-GIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E       + G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
           V EFL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
           +  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG 575
           KN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEG 609

Query: 576 -HAGSFLELCSLVQLQNYILSEL 597
              G   ELC+  +++  +LS++
Sbjct: 610 IKGGDLRELCNNPRVKAAVLSDM 632

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 318/566 (56%), Gaps = 19/566 (3%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
           +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
            +FLR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+ 
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491

Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551

Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG-- 575
           + K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K WA S G  
Sbjct: 552 IFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIK 611

Query: 576 --HAGSFLELCSLVQLQNYILSELKN 599
             H G   +LC+  +++  +L+E+ +
Sbjct: 612 YEHLG---QLCNDPRVRKTVLAEMDD 634

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/599 (35%), Positives = 333/599 (55%), Gaps = 16/599 (2%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           YYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E +   
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 597
           +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L ++
Sbjct: 556 SEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDI 614

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  362 bits (928), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 323/578 (55%), Gaps = 21/578 (3%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
           PL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453

Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
           EM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW- 570
           IDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K  
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLF 573

Query: 571 --AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKV 606
              Y      +   L    +L   ILS     A   K+
Sbjct: 574 ASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKL 611

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  342 bits (877), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 320/573 (55%), Gaps = 21/573 (3%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
             E   PL++ +       K   +  G  + ++    D L F K++  LGGR+R++++G 
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420

Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA 571
           IDRKKN+ K++QGEY+A E +EN+Y  +  +  I+V+G+SL+S LV VVVP  +    +A
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFA 597

Query: 572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERN 604
              G  GSF ELC    ++  IL +L+   + +
Sbjct: 598 AKLGVKGSFEELCQNQVVREAILEDLQKIGKES 630

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	620
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.977	0.918	0.792	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	0.977	0.915	0.780	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.977	0.911	0.781	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.977	0.915	0.770	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.977	0.915	0.764	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.977	0.918	0.747	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.977	0.918	0.749	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.977	0.907	0.736	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.977	0.918	0.747	0.0
357442179	686	Annotation was added to scaffolds in Nov	0.975	0.881	0.702	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/606 (79%), Positives = 539/606 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS K ML+AVV   EE+TKKWAY NG   SF  LCSL QL  Y+LSELK+ 
Sbjct: 541 IVEDIWVYGDSSKPMLIAVVALNEENTKKWAYLNGFLDSFSALCSLDQLHEYVLSELKST 600

Query: 601 AERNKV 606
           AERNK+
Sbjct: 601 AERNKL 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/606 (78%), Positives = 536/606 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY  A 
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE+TKKWA  NGH GS  ELCSL  L +Y+LSELK A
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPHEENTKKWADLNGHKGSLSELCSLNLLHSYVLSELKAA 600

Query: 601 AERNKV 606
           AE +K+
Sbjct: 601 AELSKL 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/609 (78%), Positives = 537/609 (88%), Gaps = 3/609 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY 
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 597
             PI+EDIW+YGDS KSMLVAVVV  EE+TK WAY NGH GSF ELCSL QLQ  +LSEL
Sbjct: 543 NTPIVEDIWIYGDSCKSMLVAVVVLHEENTKSWAYLNGHMGSFTELCSLHQLQKLVLSEL 602

Query: 598 KNAAERNKV 606
           K  AERNK+
Sbjct: 603 KTTAERNKL 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/606 (77%), Positives = 533/606 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEEITKKWAFSNGHIAPFSKLCSLDQLKKHVLSELKVT 600

Query: 601 AERNKV 606
           AERNK+
Sbjct: 601 AERNKL 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/606 (76%), Positives = 531/606 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEETTKKWAFSNGHMAPFSKLCSLDQLKKHVLSELKMT 600

Query: 601 AERNKV 606
           AERNK+
Sbjct: 601 AERNKL 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/606 (74%), Positives = 525/606 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF +LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQLKKYVLSELKLT 600

Query: 601 AERNKV 606
           AERNK+
Sbjct: 601 AERNKL 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/606 (74%), Positives = 524/606 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF  LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEVANKWAYSNGHIASFPILCSLDQLKKYVLSELKLT 600

Query: 601 AERNKV 606
           AERNK+
Sbjct: 601 AERNKL 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/612 (73%), Positives = 527/612 (86%), Gaps = 6/612 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LYK KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           +FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540

Query: 535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL 594
           VY + PI+ED+WVYG+S KS+LVAVVVP EE TKKWAY+NG  GSF ELCSL + + Y+L
Sbjct: 541 VYGITPIVEDVWVYGNSFKSVLVAVVVPNEEITKKWAYTNGFVGSFSELCSLDEFKKYVL 600

Query: 595 SELKNAAERNKV 606
           SELK  AERNK+
Sbjct: 601 SELKLTAERNKL 612

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/607 (74%), Positives = 522/607 (85%), Gaps = 1/607 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
           YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY + 
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540

Query: 540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599
           PI+EDIW+YG+S KSMLVAVVV  EE+TKKWA SNG   SF ELC L QL++Y+LSEL +
Sbjct: 541 PIVEDIWIYGNSFKSMLVAVVVLHEENTKKWANSNGFLCSFSELCPLEQLRHYVLSELTS 600

Query: 600 AAERNKV 606
            AERNK+
Sbjct: 601 TAERNKL 607

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442179|ref|XP_003591367.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355480415|gb|AES61618.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/609 (70%), Positives = 510/609 (83%), Gaps = 4/609 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEGKEGK+G  SVGPVYRNLL+ N FP +D D  +AWDIFS SV+K+P NRM
Sbjct: 23  MKSFSVKVEEGKEGKNGMLSVGPVYRNLLSQNEFPPMDPDFTSAWDIFSTSVKKHPQNRM 82

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPYVWKTYKE Y+EVLQI SAL+A GA+ G ++GIYG+NCPQW+ AMEA
Sbjct: 83  LGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A + ICVPLYDTLG GA+NFI+DHAEID+VFVQDKKVKELL+ DC+S++RL+ +V FT
Sbjct: 143 CSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFT 202

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A   GIKPY+W++F+  GK N   I PP   +ICTIMYTSGTSGDPKGVVL
Sbjct: 203 SLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSINPPLAHDICTIMYTSGTSGDPKGVVL 262

Query: 241 THETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE +   V G+DLF++QFEDK MTVDDVYLSFLPLAHILDR IEEYFFR GASVGYYHG
Sbjct: 263 THENVLALVRGMDLFMEQFEDKVMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHG 322

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK--YKLAWMN 357
           DLNAL +DL ELKPTL AGVPRVFEK++EG+    E     +    ++ +     L WMN
Sbjct: 323 DLNALLEDLSELKPTLFAGVPRVFEKVYEGMVTYQESSGTTKSSEENSFWHALQLLGWMN 382

Query: 358 MGYKQREASPLADLLAFRK-VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
            GY QREAS LADLLAFRK VKARLGGR+RL+ISGGA LS+E+EEFLRVT CAF+ QGYG
Sbjct: 383 KGYTQREASRLADLLAFRKVVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYG 442

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
           LTETCGPTT+ FPDEMCM+G  G V+V++ELRLEEVP+MGY+PL  PPCGE+CVRGK++F
Sbjct: 443 LTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVF 502

Query: 477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +GY+KNP+LT+E+IIDGWFHTGDIG++LPNG+++IIDRKKNL+K+SQGEY+ALEYLENVY
Sbjct: 503 TGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIIRIIDRKKNLVKLSQGEYIALEYLENVY 562

Query: 537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
            + PI+EDIWVYG+S KSMLVAVVVP E+ T KWAY+NGH  SF +LCSL QL+ Y+LSE
Sbjct: 563 TITPIVEDIWVYGNSFKSMLVAVVVPNEDVTNKWAYANGHISSFSKLCSLDQLKKYVLSE 622

Query: 597 LKNAAERNK 605
           LK+ A RNK
Sbjct: 623 LKSTAVRNK 631

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	620
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.977	0.918	0.694	2e-239
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.975	0.908	0.500	3.6e-169
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.975	0.908	0.495	1.2e-166
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.972	0.906	0.493	6.3e-163
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.961	0.896	0.468	1.9e-147
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.883	0.781	0.416	5.8e-105
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.890	0.788	0.392	8.2e-99
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.940	0.866	0.355	1.7e-98
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.895	0.832	0.374	8.7e-95
UNIPROTKB|F1NNV2	683	ACSL5 "Uncharacterized protein	0.896	0.814	0.346	1.8e-94

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2308 (817.5 bits), Expect = 2.0e-239, P = 2.0e-239
 Identities = 421/606 (69%), Positives = 507/606 (83%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
             KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct:   481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query:   541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
             +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct:   541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query:   601 AERNKV 606
             AE+NK+
Sbjct:   601 AEKNKL 606

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 303/605 (50%), Positives = 421/605 (69%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct:   485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct:   545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query:   602 ERNKV 606
             +  K+
Sbjct:   605 KEKKM 609

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
 Identities = 300/605 (49%), Positives = 408/605 (67%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct:   485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct:   545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query:   602 ERNKV 606
             + NK+
Sbjct:   605 KENKL 609

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1586 (563.4 bits), Expect = 6.3e-163, P = 6.3e-163
 Identities = 298/604 (49%), Positives = 411/604 (68%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
              DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query:   543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
             E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct:   546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query:   603 RNKV 606
               K+
Sbjct:   606 DKKL 609

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
 Identities = 280/598 (46%), Positives = 382/598 (63%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
              + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct:   491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query:   547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAER 603
             VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++
Sbjct:   551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQ 608

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 238/572 (41%), Positives = 329/572 (57%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
             I  A++    L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422

Query:   390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
             SG +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++
Sbjct:   423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480

Query:   449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
             L +VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP 
Sbjct:   481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540

Query:   507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEED 566
             G +KIIDRKKN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    + 
Sbjct:   541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDV 600

Query:   567 TKKWAYSNGHAGSFL-ELCSLVQLQNYILSEL 597
              K WA S G  G  L ELC+  +++  +LS++
Sbjct:   601 LKSWAASEGIKGGDLRELCNNPRVKAAVLSDM 632

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 223/568 (39%), Positives = 320/568 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L
Sbjct:    77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F
Sbjct:   136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
                + +  LLS        +R++V           +   TG+   S+ + L  G+ +   
Sbjct:   196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254

Query:   214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
               PP+P +I TI YTSGT+G PKGVVLTH  +   V+G  +  + F       DVY+S+L
Sbjct:   255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309

Query:   274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
             PLAHI +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A
Sbjct:   310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query:   334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
             ++    +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +
Sbjct:   370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426

Query:   394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
             PLS +V +FLR+     + +GYG+TET C  + +   D +   G  G  +   E++L +V
Sbjct:   427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484

Query:   453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVK 510
             PEM Y+  D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +K
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query:   511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW 570
             IIDRKKN+ K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K W
Sbjct:   545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query:   571 AYSNGHAGSFL-ELCSLVQLQNYILSEL 597
             A S G     L +LC+  +++  +L+E+
Sbjct:   605 AASEGIKYEHLGQLCNDPRVRKTVLAEM 632

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 215/604 (35%), Positives = 337/604 (55%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
             SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E + 
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553

Query:   537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
               +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L +
Sbjct:   554 VKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDD 613

Query:   597 L-KN 599
             + KN
Sbjct:   614 IIKN 617

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 217/580 (37%), Positives = 328/580 (56%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
               +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG
Sbjct:   337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392

Query:   392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
              APL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +
Sbjct:   393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451

Query:   452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
             VPEM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG +
Sbjct:   452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511

Query:   510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK 569
              IIDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K
Sbjct:   512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQK 571

Query:   570 -WA--YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKV 606
              +A  Y      +   L    +L   ILS     A   K+
Sbjct:   572 LFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKL 611

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 200/578 (34%), Positives = 325/578 (56%)

Query:    28 LLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86
             LL  N   S    D  T ++ F   +        LG+R        PY W TYK+V +  
Sbjct:    60 LLTDNNLVSYYFEDSKTLYEAFQRGLHASGNGNCLGYRK----PNQPYQWLTYKQVLDRA 115

Query:    87 LQIVSALRASGAEPGCR--VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFIL 144
               + S L   G +P     +GI+  N P+W+ +  AC   S++ VPLYDTLGP A+ +I+
Sbjct:   116 QHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPLYDTLGPDAILYIV 175

Query:   145 DHAEIDFVFVQDKKVKELLSPDCRSAQR--LRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
             + A+I  V     +  ++L  +C   +   L+ ++       E K+   + G++  +  E
Sbjct:   176 NKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDRGAKVGVEILALQE 235

Query:   203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                LG+ N  + +PP P ++C + +TSGT+G+PKG +LTHE +   V+    FL   ED 
Sbjct:   236 AEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENV---VANAAAFLRTIEDT 292

Query:   263 M--TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
             +  T  DV +S+LPLAH+ +RV++   +  GA VG++ GD+  L DD+  LKPT+   VP
Sbjct:   293 VECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMKTLKPTIFPVVP 352

Query:   321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
             R+  +I++ I+       P+++ + +     K+  +  G  + ++  L D L F+KV+  
Sbjct:   353 RLLNRIYDKIQSGANT--PMKKFLLNFAATMKMIEVKQGIIRNDS--LLDKLVFKKVQET 408

Query:   381 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440
             +GGR+R++++G AP+S  V +FLR      + + YG TE     T   P +    G  GP
Sbjct:   409 MGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSMPGDWT-TGHVGP 467

Query:   441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
               V + ++L++V EM Y   ++   GEVC++G  +F GY K+P+ T E+I  DGW HTGD
Sbjct:   468 PLVCNIIKLDDVEEMNYFSSNNE--GEVCIKGPNVFKGYLKDPEKTAEAIDKDGWLHTGD 525

Query:   500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAV 559
             +G+ +PNG +KIIDRKKN+ K++QGEY+A E +ENVY  +  +  ++V+G+SL+S L+ +
Sbjct:   526 VGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSVAVAQVFVHGESLRSCLIGI 585

Query:   560 VVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 597
             VVP  E   ++A   G  GS+ ++C    ++  IL +L
Sbjct:   586 VVPDAETLPEFAAKLGIKGSYEDICKNPAVKKAILEDL 623

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.3427	0.8903	0.8081	yes	no
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.6947	0.9774	0.9181	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3505	0.9403	0.8662	yes	no
Q9ULC5	ACSL5_HUMAN	6, ., 2, ., 1, ., 3	0.3507	0.8903	0.8081	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028146001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.900
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	620
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-169
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-141
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-109
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-105
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-99
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-88
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-81
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-77
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-71
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	7e-56
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-56
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-53
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	4e-44
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	6e-44
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-40
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	9e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	9e-38
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-35
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-32
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-32
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	5e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	5e-32
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	8e-32
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-31
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	7e-27
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-26
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	9e-24
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-23
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-22
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	7e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	7e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-20
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-19
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-19
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-18
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	9e-18
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	8e-17
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	9e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-15
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-15
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	5e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-14
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-13
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-13
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-13
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-12
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	9e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	7e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	8e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-10
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	8e-10
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	5e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	8e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	7e-08
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	8e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	9e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	8e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	6e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	6e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	4e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	8e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.002
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	0.004
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.004
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.004
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.004
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1211 bits (3135), Expect = 0.0
 Identities = 477/606 (78%), Positives = 537/606 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY   P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS KSMLVAVVVP EE+T KWA  NG  GSF ELCSL +L+ +ILSELK+ 
Sbjct: 541 IVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKST 600

Query: 601 AERNKV 606
           AE+NK+
Sbjct: 601 AEKNKL 606

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  708 bits (1830), Expect = 0.0
 Identities = 305/608 (50%), Positives = 407/608 (66%), Gaps = 5/608 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  Y YKL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           Y+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y  
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
            P+I  IWVYG+S +S LVAVVVP  +  + WA +N   G F  LC  ++ + YIL EL 
Sbjct: 539 CPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELN 598

Query: 599 NAAERNKV 606
           +  ++ ++
Sbjct: 599 STGKKLQL 606

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  684 bits (1766), Expect = 0.0
 Identities = 307/605 (50%), Positives = 423/605 (69%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ + YK   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S LVA+  P ++  ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKV 606
           +  K+
Sbjct: 605 KEKKM 609

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  671 bits (1733), Expect = 0.0
 Identities = 253/537 (47%), Positives = 336/537 (62%), Gaps = 46/537 (8%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ I VYGD
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436

Query: 551 SLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKV 606
           SLKS LVA+VVP E+  +KWA  NG   G F ELC+  +L+  IL +L    + N +
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGL 493

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  495 bits (1276), Expect = e-169
 Identities = 234/571 (40%), Positives = 326/571 (57%), Gaps = 24/571 (4%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
            VPR++ +I++GI  A++E   L+ R+F+A Y  K   +  G   +  SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370

Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
           KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
             G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            HTGDIG  LP G +KIIDRKKN+ K++QGEY+A E +ENVY     +   +VYGDSL S
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNS 548

Query: 555 MLVAVVVPCEEDTKKWAYSNGH-AGSFLELC 584
            LVAVVV   E  K WA S G       +LC
Sbjct: 549 SLVAVVVVDPEVLKAWAASEGIKYEDLKQLC 579

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  424 bits (1093), Expect = e-141
 Identities = 194/548 (35%), Positives = 287/548 (52%), Gaps = 44/548 (8%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA--GSFLELCSLVQLQNYILS 595
            +P+IE I V GD  K  LVA++VP  +  +KWA S       S  EL    +L   IL 
Sbjct: 494 KSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552

Query: 596 ELKNAAER 603
            +    +R
Sbjct: 553 RVNKGNKR 560

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  336 bits (864), Expect = e-109
 Identities = 164/528 (31%), Positives = 241/528 (45%), Gaps = 123/528 (23%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
           E++  DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I    
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAV 364

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCSLVQLQNYI 593
           V GD     L A++V   E  +KWA  +G    ++ +L    +++  I
Sbjct: 365 VVGDDRPY-LTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALI 411

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  332 bits (854), Expect = e-105
 Identities = 207/614 (33%), Positives = 311/614 (50%), Gaps = 64/614 (10%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
                D   LKPTL+  VP + +++ +G++K ++    L +++FD  YK +LA +     
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G    E   L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
           ETC   T    D+   VG  GP      ++L    E GY   D P P GE+ + G ++  
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514

Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
           GY+KN + T E   +D     WF+TGDIGQ  P+G ++IIDRKK+++K+  GEYV+L  +
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574

Query: 533 ENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQN 591
           E    V+P +++I V+ D   S  VA+VVP ++  +KWA   G    +F ELC   +   
Sbjct: 575 EAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVK 634

Query: 592 YILSELKNAAERNK 605
            +   L  AA+  +
Sbjct: 635 EVQQSLSKAAKAAR 648

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  317 bits (814), Expect = 4e-99
 Identities = 172/562 (30%), Positives = 261/562 (46%), Gaps = 63/562 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 535 VYCVAPII--EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592
           +Y    ++    + V     +S + A+V+  E     +A  +G  G +  +         
Sbjct: 578 LYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAI--------- 628

Query: 593 ILSELKNAAERNKVIFANWDTG 614
               LK+   + K   +  +T 
Sbjct: 629 ----LKDPEFQKKATESLQETA 646

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  279 bits (716), Expect = 4e-88
 Identities = 125/478 (26%), Positives = 194/478 (40%), Gaps = 74/478 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           DGW    TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + +  V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  264 bits (676), Expect = 4e-81
 Identities = 153/517 (29%), Positives = 232/517 (44%), Gaps = 94/517 (18%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R   L SGYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEE 565
              +EN+    P +E + V G  L    VA+VV  E 
Sbjct: 407 PAPIENLLSANPHVEQVCVVGSGLPQP-VALVVLSEA 442

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  256 bits (655), Expect = 1e-77
 Identities = 136/497 (27%), Positives = 204/497 (41%), Gaps = 76/497 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
              DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V    P + +  V 
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVV 455

Query: 549 G---DSLKSMLVAVVVP 562
           G   +     +VAVVV 
Sbjct: 456 GVPDERWGERVVAVVVL 472

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  241 bits (616), Expect = 2e-71
 Identities = 162/550 (29%), Positives = 247/550 (44%), Gaps = 65/550 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 534 N-VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-----ELCSLV 587
             V    PII +  + GD  K + + + + CE D +      G     L     E C L+
Sbjct: 460 EAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE-----TGEPLDNLTEEAIEFCRLL 514

Query: 588 QLQNYILSEL 597
                 +SE+
Sbjct: 515 GSHATTVSEI 524

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (499), Expect = 7e-56
 Identities = 125/489 (25%), Positives = 185/489 (37%), Gaps = 125/489 (25%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP                
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                      LY                     LL   + K      LRL ISGGAPL 
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255

Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
            EV E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           E+   P  +   GE+ VRG  +  GY+  P+ T E + DGW  TGDIG +  +G   I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369

Query: 514 RKKNLIKIS 522
           RKK++I + 
Sbjct: 370 RKKDMIIVG 378

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  196 bits (502), Expect = 8e-56
 Identities = 138/525 (26%), Positives = 199/525 (37%), Gaps = 133/525 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           + VRG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428

Query: 528 -ALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCEEDTKKW 570
              E LE+     P + +            VAV+ VP E    KW
Sbjct: 429 YPRE-LEDALYGHPAVAE------------VAVIGVPDE----KW 456

Length = 521

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  195 bits (497), Expect = 1e-53
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 16/368 (4%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Query: 543 EDIWVYGD 550
               VYGD
Sbjct: 620 NFCVVYGD 627

Length = 746

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  173 bits (441), Expect = 1e-47
 Identities = 128/516 (24%), Positives = 203/516 (39%), Gaps = 93/516 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T+E+I  DGW HTGDIG    +G   I+DRKK LIK  +G  V    LE V    P + 
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421

Query: 544 DIWVYG--DSLKSML-VAVVVP------CEEDTKKW 570
           D  V G  D +   L  A VV        E++ K +
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDY 457

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  164 bits (418), Expect = 1e-44
 Identities = 131/498 (26%), Positives = 197/498 (39%), Gaps = 126/498 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + ++ V
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369

Query: 548 YG---DSLKSMLVAVVVP 562
                + L   + AVVVP
Sbjct: 370 VAMPDERLGERVCAVVVP 387

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  160 bits (407), Expect = 4e-44
 Identities = 105/355 (29%), Positives = 150/355 (42%), Gaps = 63/355 (17%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP +++ +           
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           +    R       Y L+                              LRL+ISGG PLS 
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R 
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS-MLVAVVVPCEEDT 567
           K+LIK+  GE V    +E+V    P + +  V G  D  +   +VA VV      
Sbjct: 247 KDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGAD 300

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  163 bits (416), Expect = 6e-44
 Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
           A  L+ L              RL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           YY +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (397), Expect = 3e-41
 Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           +       GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421

Query: 518 LIKISQGEYVALEYLEN 534
           +IK S GE+++   LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  150 bits (382), Expect = 4e-40
 Identities = 99/367 (26%), Positives = 139/367 (37%), Gaps = 84/367 (22%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G 
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +   G + ++ R+ +LI IS GE +  E +E V    P +E+  V G   D      VA 
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAF 356

Query: 560 VVPCEED 566
           VVP ++ 
Sbjct: 357 VVPNDDP 363

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  152 bits (385), Expect = 9e-40
 Identities = 102/364 (28%), Positives = 155/364 (42%), Gaps = 81/364 (22%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQI 503
            E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTGD+G  
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDIWVYGDSLKSMLVAVVVP 562
             +G + I+DR K LIK     Y         + VAP  +E + +   S   +  A V+P
Sbjct: 397 DEDGYLFIVDRLKELIK-----Y-------KGFQVAPAELEALLL---SHPEIADAAVIP 441

Query: 563 CEED 566
             ++
Sbjct: 442 YPDE 445

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  143 bits (362), Expect = 9e-38
 Identities = 93/375 (24%), Positives = 148/375 (39%), Gaps = 89/375 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +   ++       +    +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNV---LNNGYSIARRL--GLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241

Query: 507 GVVKIIDRKKNLIKISQGEYVA-LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           G ++I+ R K++I I  GE +   E +E      P + +  V G   + L  ++ A VV 
Sbjct: 242 GYLRIVGRIKDMI-IRGGENIYPAE-IEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVL 299

Query: 563 ------CEEDTKKWA 571
                  EE+   + 
Sbjct: 300 KPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  143 bits (363), Expect = 3e-37
 Identities = 133/503 (26%), Positives = 185/503 (36%), Gaps = 147/503 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPII 542
           T E+   DGWF TGD+G +  +G  +I+ RK + I I  G Y   ALE +E      P +
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEALLEHPGV 363

Query: 543 EDIWVYG---DSLKSMLVAVVVP 562
            ++ V G         +VAVVVP
Sbjct: 364 AEVAVIGVPDPDWGEAVVAVVVP 386

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  136 bits (345), Expect = 2e-35
 Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G +  
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235

Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +G + I+DRKK++I IS G        EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  130 bits (328), Expect = 2e-32
 Identities = 129/511 (25%), Positives = 190/511 (37%), Gaps = 132/511 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T D V L+FLPL H+                G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
             +F TGD+G I   G    +DR K +I +S G  V    +E +    P + ++ V G  
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCVIGRP 367

Query: 550 DSLKSMLV-AVVVP--------CEEDTKKWA 571
           D  +  +V A VV          EED  +W 
Sbjct: 368 DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 4e-32
 Identities = 108/499 (21%), Positives = 173/499 (34%), Gaps = 128/499 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
               GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE + +Y
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETV-LY 363

Query: 549 GDSLKSMLVAVVVPCEEDT 567
                 +  AVVVP  +  
Sbjct: 364 --QHPGIQEAVVVPKPDAE 380

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  130 bits (328), Expect = 5e-32
 Identities = 110/543 (20%), Positives = 187/543 (34%), Gaps = 100/543 (18%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                  ++YTSGT+G PKG+V +H                 +      D + +      
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
           I                G ++   + L            +G   V    ++G      E 
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
                R+++AL KYK+            SP  L  L+     +      LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           + E  E F       +++  YG TET        P      G++G            +P 
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347

Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
            GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+    W+ TGD  +  
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLK-SMLVAVVV 561
            +G   +  R  ++IK+S G+ +    +E+V    P + +  V G  D  K  +++A VV
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVV 466

Query: 562 PCE 564
              
Sbjct: 467 LAA 469

Length = 528

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  129 bits (326), Expect = 5e-32
 Identities = 124/481 (25%), Positives = 193/481 (40%), Gaps = 92/481 (19%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           +I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + ++ V 
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVV 425

Query: 549 G 549
           G
Sbjct: 426 G 426

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (328), Expect = 8e-32
 Identities = 155/588 (26%), Positives = 235/588 (39%), Gaps = 126/588 (21%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
                                 +R   SG   L    VE + ++T    LV+GYGLTET 
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373

Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
            P  V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           F GY+  P+ T +S +DGWF TGD+  +  +G ++I+DR K LI I+ G  V    +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486

Query: 536 YCVAPIIEDIWVYG---DSLKSMLVAVVVPC------EEDTKKWAYSN 574
               P +ED  V G   +     +VA VV         E  + +   +
Sbjct: 487 LREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  124 bits (315), Expect = 6e-31
 Identities = 95/371 (25%), Positives = 133/371 (35%), Gaps = 98/371 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+ 
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS-------ML 556
             +G +  +DRKK+ I+   GE ++   +E      P + +  V    + S         
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA--VPSELGEDEVKA 369

Query: 557 VAVVVPCEEDT 567
           V V+ P E   
Sbjct: 370 VVVLRPGETLD 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (291), Expect = 2e-27
 Identities = 132/513 (25%), Positives = 200/513 (38%), Gaps = 114/513 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRG 472
           P T C     D +  +G+ G V          +P +    +D+     P    GE+  R 
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRA 378

Query: 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
            TL SGY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +
Sbjct: 379 PTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEV 437

Query: 533 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           ENV    P I ++ V G   +    + VAV   
Sbjct: 438 ENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Length = 542

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (288), Expect = 7e-27
 Identities = 141/547 (25%), Positives = 205/547 (37%), Gaps = 124/547 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I 
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE---EDTKKWA-YSNGH 576
           I  GE +    +E      P + D+ V+G           VP E   E+   W     GH
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQVFG-----------VPDEKYGEEIVAWVRLHPGH 503

Query: 577 AGSFLEL 583
           A S  EL
Sbjct: 504 AASEEEL 510

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  110 bits (276), Expect = 3e-26
 Identities = 96/363 (26%), Positives = 143/363 (39%), Gaps = 85/363 (23%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TGD+G +  +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEED 566
            +  R K LI    GE ++   +E V    P + +  V+G   +     + A VV    D
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVL-RAD 299

Query: 567 TKK 569
           +K 
Sbjct: 300 SKV 302

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (278), Expect = 4e-26
 Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 521
            +  GY   P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  108 bits (272), Expect = 6e-25
 Identities = 114/365 (31%), Positives = 157/365 (43%), Gaps = 104/365 (28%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 336
           L+ V+                 L  LR     +   +L  +   FE   + E I++    
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 393
           + P    I  A+ K               SP+    DL + R V            SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308

Query: 394 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 442
           PL  E+E+  R     A L QGYG+TE  GP        MC+           G+ G V 
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
             +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  DGW HTGDIG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
            I  +  + I+DR K LIK  +G  VA   LE +    P I D             A VV
Sbjct: 421 YIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD-------------AAVV 466

Query: 562 PCEED 566
           P +++
Sbjct: 467 PMKDE 471

Length = 537

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  107 bits (270), Expect = 1e-24
 Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G + I 
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447

Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            R+K++I I+   Y   E +E      P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  104 bits (262), Expect = 9e-24
 Identities = 110/370 (29%), Positives = 142/370 (38%), Gaps = 90/370 (24%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + 
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361

Query: 505 PNGVVKIIDRKK-NLIK-----ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSM 555
           P+G+ +I+ R+  +LIK     I  GE      +E      P + +  V G   D L   
Sbjct: 362 PDGMHRIVGRESTDLIKSGGYRIGAGE------IETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 556 LVAVVVPCEE 565
           +VA VV  ++
Sbjct: 416 IVAYVVGADD 425

Length = 471

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  103 bits (258), Expect = 4e-23
 Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)

Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+GD+ 
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  100 bits (249), Expect = 4e-22
 Identities = 102/342 (29%), Positives = 150/342 (43%), Gaps = 67/342 (19%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
              ++DRKK++I IS G  V  + +E      P ++++ V G
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 99.7 bits (249), Expect = 5e-22
 Identities = 132/503 (26%), Positives = 198/503 (39%), Gaps = 87/503 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           P L      DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Query: 543 EDIWV--YGDS-LKSMLVAVVVP 562
             + +  Y D  L     A VVP
Sbjct: 468 AQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 98.6 bits (245), Expect = 1e-21
 Identities = 134/514 (26%), Positives = 207/514 (40%), Gaps = 82/514 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             GY+  P+ T   + DGW HTGD+G +  +G   + DRKK++I ++ G  V    +E V
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEV 472

Query: 536 YCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDT 567
                 ++++   G  D  +   V   V  +E T
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Length = 563

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 510 KIIDRKKNLIKIS 522
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.4 bits (240), Expect = 7e-21
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
           +DRKK++I +S G  V    LE+V    P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.3 bits (238), Expect = 7e-21
 Identities = 87/366 (23%), Positives = 144/366 (39%), Gaps = 76/366 (20%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCE-- 564
             + RK   IK+  G  + LE +E      P +E+   + V        LVA VV  E  
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA 405

Query: 565 EDTKKW 570
            DTK  
Sbjct: 406 LDTKAL 411

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 94.1 bits (234), Expect = 3e-20
 Identities = 126/524 (24%), Positives = 189/524 (36%), Gaps = 95/524 (18%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           R    F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433

Query: 528 ALEYLENVYCVAPIIEDIWVYGDSLKSML----VAVVVPCEEDT 567
           +   +E V    P +    V+   + S L    V   V   + T
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVF--PVPSELGEDEVMAAVVLRDGT 475

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 93/364 (25%), Positives = 142/364 (39%), Gaps = 94/364 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++ 
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
             G +KI  RKK++I +  GE ++   +E++    P I D  V     + L     A VV
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVV 480

Query: 562 PCEE 565
               
Sbjct: 481 LKAP 484

Length = 547

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470

Length = 562

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 91.9 bits (229), Expect = 2e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 518 LIKISQGE 525
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 131/585 (22%), Positives = 194/585 (33%), Gaps = 162/585 (27%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T   +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V    P + 
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVA 463

Query: 544 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN---GHAGSFLELCS 585
            + V G    S L  +VV C      W +S+    +A   L L S
Sbjct: 464 SVVVVG-VPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS 507

Length = 563

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246

Query: 506 NGVVKIIDRKKNLI 519
           +G + +  R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.4 bits (225), Expect = 4e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 114/499 (22%), Positives = 185/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS 551
             W  TGD      +G      R  +++K+S G +V+   +E+     P + +  V G  
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAE 441

Query: 552 LKSMLV---AVVVPCEEDT 567
            +  L    A VV  +   
Sbjct: 442 DEDGLTKPKAFVVLKDGYQ 460

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 96/456 (21%), Positives = 155/456 (33%), Gaps = 97/456 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL D L P
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL-DPLYP 312

Query: 138 GA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + +IL+ +    +  Q       L  D      L                A+   + 
Sbjct: 313 AERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALS 351

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                + +    + +          +  I+YTSG++G PKGV + H  +A  ++      
Sbjct: 352 EIPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG--- 399

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLME 310
            +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L  
Sbjct: 400 ARFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEA 455

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
              T+L  VP                                   + +         L  
Sbjct: 456 QGITVLLLVP---------------------------------LLLRL---------LLL 473

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCF 428
                 + +    RLR ++SGG  L   + + L         L+  YG TE     T+  
Sbjct: 474 AALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDA 528

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           P           V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT
Sbjct: 529 PSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLT 588

Query: 487 RES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
            E  I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 589 AERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS 551
           W HTGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + ++   G  D 
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDE 496

Query: 552 LKSMLVAVVV 561
               +V VV+
Sbjct: 497 KSGEIVKVVI 506

Length = 560

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 86.9 bits (216), Expect = 5e-18
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
           E +    +E V    P + +  V G
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVG 415

Length = 483

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 86.2 bits (214), Expect = 6e-18
 Identities = 91/357 (25%), Positives = 129/357 (36%), Gaps = 80/357 (22%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                                                    LL      A L   +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G 
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVP 562
            +   R  ++IK+S G++V+   +E      P + +   + V  +     L A VVP
Sbjct: 330 YRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVP 385

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 128/515 (24%), Positives = 193/515 (37%), Gaps = 104/515 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
                PR V + +   GI   L  + PL  ++       +L W           P +   
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276

Query: 373 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           + R +    GG + R  +S           FL           YGLTE    T +  P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324

Query: 432 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           +      +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375

Query: 485 LTRESI--------------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 530
            T E                +  W  +GD  +    G +  + R+  +IK S G  V+  
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432

Query: 531 YLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
            +E V     ++ +   +G    +L   +V VV P
Sbjct: 433 EVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.1 bits (214), Expect = 9e-18
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLV 557
           G +   G + + DRKK++I IS GE +A   +E V    P + +  V G   D     + 
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439

Query: 558 AVVV 561
           AVVV
Sbjct: 440 AVVV 443

Length = 497

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 85.4 bits (212), Expect = 2e-17
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
           +I  +G + I+ R K   KI  GE V+L  +E       ++ +I        S+  AV V
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEE------LLSEIL----PEDSLHAAVEV 425

Query: 562 PCEE 565
           P E+
Sbjct: 426 PDEK 429

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 106/379 (27%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
                 L  L PL R  F +L                                     R 
Sbjct: 105 ------LLRLDPLAREDFPSL-------------------------------------RY 121

Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
           +   +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ +  V G  
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVP 288

Query: 550 -DSLKSMLVAVVVPCEEDT 567
              L   +VAVVV  + ++
Sbjct: 289 DPLLGQAIVAVVVSADGES 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 85.3 bits (212), Expect = 2e-17
 Identities = 137/513 (26%), Positives = 191/513 (37%), Gaps = 159/513 (30%)

Query: 64  RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 123
            PF++   G     TY ++     ++ + L A G +PG RV +     P   EA+    A
Sbjct: 18  APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68

Query: 124 LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176
           L L  +       PL        +++ +  AE   + V D      LS     A      
Sbjct: 69  LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124

Query: 177 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229
              T       SL                  D+F         E +P    ++  I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165

Query: 230 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 288
           GT+G  KG +L+H  + +  ++ VD +      + T DDV +  LP+ H           
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209

Query: 289 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348
                    HG   A           LLAG   +F                L +  FD  
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------------LPK--FDP- 234

Query: 349 YKYKLAWMN-----MG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
               LA M      MG    Y +    P        +  A     +RL ISG APL  E 
Sbjct: 235 -DAVLALMPRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAET 285

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSEL 447
             EF   T  A L + YG+TET   T           TV FP    + G          L
Sbjct: 286 HREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SL 332

Query: 448 RLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
           R+ + PE G + L   P GE+    V+G  +F GY++ P+ T E    DG+F TGD+G+I
Sbjct: 333 RVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
              G V I+ R K+LI IS G Y       NVY
Sbjct: 388 DERGYVHIVGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 83.1 bits (206), Expect = 8e-17
 Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
            SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 126/526 (23%), Positives = 191/526 (36%), Gaps = 171/526 (32%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL-KPTLLAGVPRVFEKI 326
                      LD          GASV  Y         +L++  K T  AGVP V+  +
Sbjct: 244 MGTKLVMPGAKLD----------GASV--Y---------ELLDTEKVTFTAGVPTVWLML 282

Query: 327 HEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPLADL 371
            + ++K   +L  L+          R +  A     +    AW M       E SPL  L
Sbjct: 283 LQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPLGTL 336

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
            A +   ++L G  RL +                       QGY       P  V    E
Sbjct: 337 AALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV----E 366

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
           M +   AG          +E+P       D    G + VRG  + + YY+        I+
Sbjct: 367 MKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG----EIL 406

Query: 492 D--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           D  G+F TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.0 bits (202), Expect = 2e-16
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 44/197 (22%)

Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
           T E+   GW +TGD+G I P+G V+I DR K++I IS GE ++   +ENV         +
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV---------L 462

Query: 546 WVYGDSLKSMLVAVVVP 562
           + Y   L++ +VA+  P
Sbjct: 463 YKYPKVLETAVVAMPHP 479

Length = 579

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459

Query: 508 VVKIIDRKKNLI 519
              +  R K+LI
Sbjct: 460 YFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 124/508 (24%), Positives = 177/508 (34%), Gaps = 150/508 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDL----M 309
                F   +  DDV +S+LPL                     YH        D+     
Sbjct: 179 AIARAFG--LDPDDVGVSWLPL---------------------YH--------DMGLIGG 207

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR--RIFDALYKYKLAWM---NMGYK 361
            L+P L AG P V              + P   LRR  R  +A+ +Y+       N  Y 
Sbjct: 208 LLQP-LYAGFPVVL-------------MSPLAFLRRPLRWLEAISRYRATVSGAPNFAY- 252

Query: 362 QREASPLADLLAFRKVK-ARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG- 414
                   DL   R+V+  +L G      R+  +G  P+  + +E F       F   G 
Sbjct: 253 --------DLCV-RRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAE----RFAPAGF 299

Query: 415 --------YGLTETC----------GPTTVCFPDEMCMVGTAGP-----------VSVYS 445
                   YGL E            GP  +    +    G A             VS   
Sbjct: 300 RPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGR 359

Query: 446 ELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGW 494
            L   EV    PE    PL D   GE+ VRG ++ +GY+  P+ T E+          GW
Sbjct: 360 PLPGHEVRIVDPE-TRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGW 418

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
             TGD+G  L +G + +  R K+LI I 
Sbjct: 419 LRTGDLG-FLHDGELYVTGRLKDLIIIR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 80.7 bits (200), Expect = 4e-16
 Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
                  P  +P       GE+C+ G  +  GY   P+LT E  I      +      + 
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
           TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 81.0 bits (201), Expect = 4e-16
 Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F    
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325

Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
                TGD+ + LP+G ++ + R  + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD    
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317

Query: 504 LPNGVVKIIDRKKNLIKIS 522
             +G    + R  ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.1 bits (198), Expect = 9e-16
 Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
            DGWF TGD+G +   G + I  R  ++  IS G         NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428

Length = 528

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           TGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED  V
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 522 SQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCE 564
             GE V+   LEN+    P I+DI V G  DS++   + A VV  E
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471

Length = 517

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 77.3 bits (190), Expect = 7e-15
 Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
              P +L     V + I    + A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  + 
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVA 469

Query: 547 VYG---DSLKSMLVAVVVP 562
           +     + L     AVVVP
Sbjct: 470 IVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398

Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             +  +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV- 557
           G +   G + I  R K LI    GE ++ E +E V    P + +  V+G  D L    V 
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVA 474

Query: 558 AVVVPCE 564
           AV+VP E
Sbjct: 475 AVIVPRE 481

Length = 534

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Query: 499 D 499
           D
Sbjct: 401 D 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 526 YVA 528
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 92/354 (25%), Positives = 133/354 (37%), Gaps = 69/354 (19%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
             P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337

Query: 515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCEE 565
             ++IK S G  +    +E      P + +  V G  D  +  +V A VV  E 
Sbjct: 338 ADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEG 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 74/245 (30%), Positives = 108/245 (44%), Gaps = 47/245 (19%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D  V 
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 549 GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK 605
               K    + VA VV      ++        GS L   S   + NY+  ++    +  K
Sbjct: 485 AVPDKECGEIPVAFVV------RR-------QGSTL---SQEAVINYVAKQVAPYKKVRK 528

Query: 606 VIFAN 610
           V+F  
Sbjct: 529 VVFVQ 533

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 7e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 111/551 (20%), Positives = 205/551 (37%), Gaps = 72/551 (13%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427 RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
             +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483 DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
            +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540 AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220 FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                 ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650 -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
           + +A E    +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707 LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Query: 390 --SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
                   S  + E + V C    ++      + G   V      C+ GT  P S+  +L
Sbjct: 764 LCVSEESTSFSLLEHISV-CYVPCLREVFFLPSEG---VF-----CVDGTPAP-SLQVDL 813

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
                      P D+P  G     G+ + +   K        I   W    D        
Sbjct: 814 E----------PFDEPSDGAGI--GQLVLA--KKGEPRRTLPIAAQW--KRD-------R 850

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
            ++++     ++     EYV    LE ++  +  + DI++Y D  +  ++A+V P   DT
Sbjct: 851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSP-NRDT 908

Query: 568 KKWAYSNGHAG 578
            ++ +   H  
Sbjct: 909 VEFEWRQSHCM 919

Length = 1452

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 28/195 (14%)

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
           L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     ++ 
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P      G+ G    + ++ +            D   GE+ VRG +L  GY   P  T 
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I    V
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380

Query: 548 YGDSLKSMLVAVVVP 562
           +GD+ +  LVA++VP
Sbjct: 381 FGDA-QPFLVALIVP 394

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 71.1 bits (175), Expect = 5e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.5 bits (171), Expect = 2e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 479 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           Y+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---------CVAPIIED 544
           W HTGD+ +   +G   I+DRKK++I ++ G  V    +E+V           V  + ++
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452

Query: 545 IWVYGDSLKSMLVAVVVPCEE 565
            W  G+++     AVVV    
Sbjct: 453 KW--GEAVT----AVVVLRPG 467

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.5 bits (166), Expect = 9e-12
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 525 EYVALEYLENVY 536
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 99/395 (25%), Positives = 151/395 (38%), Gaps = 94/395 (23%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323

Query: 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV 557
           + +   +G    I R  ++I IS G  +    +E+     P + +  V G  D L+  +V
Sbjct: 324 LVERDEDGYFWFIGRADDVI-ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIV 382

Query: 558 -AVVVPCEEDTKKWAYSNGHAGS---FLELCSLVQ 588
            A VV             G+AGS     EL   V+
Sbjct: 383 KAFVV----------LKEGYAGSDELAEELQLFVK 407

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
             DGWF TGDI +   +G   ++DRKK++  IS GE V    +E V    P I +  V G
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416

Length = 488

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 7e-11
 Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
            +R  +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 8e-11
 Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 42/195 (21%)

Query: 385  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 439  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            + TGDI  I   G + I  R K   KI+ GE ++L  +E       +  ++W        
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE------LAAELWPDALH--- 1061

Query: 555  MLVAVVVPCEEDTKK 569
               AV +P   D +K
Sbjct: 1062 --AAVSIP---DARK 1071

Length = 1140

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.1 bits (157), Expect = 8e-11
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLA 276
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 112/520 (21%), Positives = 177/520 (34%), Gaps = 133/520 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP   + + +     +   RP R  +                   EA  + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA R      G R                          L+  YG TE    TTV     
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
                         EL  EE    G  P+  P              P      GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861

Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
             L  GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI +G
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RG 920

Query: 525 EYVALEYLENVYCVAPIIEDIWV--YGDSLKSMLVAVVVP 562
             + L  +E      P + +  V          LVA +VP
Sbjct: 921 FRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960

Length = 3956

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
              W  +GD      +G      R  +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 62.6 bits (153), Expect = 3e-10
 Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 498 GD 499
           GD
Sbjct: 445 GD 446

Length = 614

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 62.2 bits (152), Expect = 4e-10
 Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 31/202 (15%)

Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                   + TGD+ +  P+G ++ + R  + +KI +G  + L  +E      P + D  
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAV 372

Query: 547 VY---GDSLKSMLVAVVVPCEE 565
           V           LVA VVP   
Sbjct: 373 VVVREEGPGDQRLVAYVVPKAG 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 385  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 434  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 485  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 26/235 (11%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L  V   GA +   V E +        V  YG TE      +  P      GT      +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           SE+R+  +       L +   GE+ V      F+GY   P  T E + DGW+ T D+  +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVV 560
            P+G V+I+ R  ++I IS GE +    +E V   AP + ++ V G   +     + A V
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACV 445

Query: 561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY-------ILSEL-KNAAERNKVI 607
           VP E +T         A +    C   +L ++        L EL KNA   NKV+
Sbjct: 446 VPREGETLS-------ADALDTFCRASELADFKRPRRYFFLDELPKNAM--NKVL 491

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 8e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 519 IKISQGEYVALEYLENV 535
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 521 ISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG 578
           I  G  V L  +E      P ++   + V GD     L A VV  +      A       
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445

Query: 579 SFL 581
             L
Sbjct: 446 ELL 448

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
             + ++LD ++   +  + +   +V E+L        +LR +V        +    AV  
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 +++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187

Query: 254 LFLDQFE--DKMTVDDV 268
           +F       D  T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.4 bits (141), Expect = 1e-08
 Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 370  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 422  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 482  NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
             P LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 78/361 (21%), Positives = 129/361 (35%), Gaps = 69/361 (19%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 397  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTEA----TITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 455  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
                P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
            V++ I R  + +KI +G  + L  +E      P + +  V     +  LVA VVP +E  
Sbjct: 3439 VIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQ-LVAYVVPEDEAG 3496

Query: 568  K 568
             
Sbjct: 3497 D 3497

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 397  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 453  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
             +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +  
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392

Query: 505  PNGVVKIIDRKKNLIKI 521
             +GVV+ + R  + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 95/489 (19%), Positives = 152/489 (31%), Gaps = 87/489 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
                +     V L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
                 T  AGVP V+  +    E                     K     +  G     
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
           ++    L+A  +        + +    G    TE                  +       
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316

Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                  +E  + +     + +          E    P D    GEV ++G  +  GYY 
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376

Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           N + TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435

Query: 541 IIEDIWVYG 549
            +++  V  
Sbjct: 436 KVKEAAVVA 444

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 56.0 bits (136), Expect = 3e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 40/208 (19%)

Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
           LR ++ GG  LS   V   L       L+ GYG TE    TT   C     +     + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298

Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +       +VY    E +   +   G          E+ V G  L  GY   P+LT E  
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348

Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
           +      G   + TGD+ +  P+G ++ + R    +KI +G  + L  +E      P + 
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVR 407

Query: 544 DIWV----YGDSLKSMLVAVVVPCEEDT 567
           +  V         K  LVA VV      
Sbjct: 408 EAAVLVREDAAGDKR-LVAYVVARGALD 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL--- 552
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D  +    D L   
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 553 KSMLVAVVVPCEEDTK 568
           KS   A +V  E   +
Sbjct: 478 KS--CAFIVVKEPPLR 491

Length = 542

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 83/351 (23%), Positives = 134/351 (38%), Gaps = 87/351 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
           L              P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Query: 505 -PNGVVK--IID-RKKNLIKISQGEYVALEYL--ENVYCVAPIIEDIWVYG 549
            P+   K  I D R     K+S G +V++  L  + V   +P+I D  V G
Sbjct: 464 DPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 518 LIKI 521
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +    S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 396  ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 446  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475

Query: 498  GDIGQILPNGVVKIIDRKKNLIKI 521
            GD+ +   +GV++ + R  + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + I DR +++I+ S GE++    LEN    AP + +  V G
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 384 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           RLR V++G   L    ++       LR+      ++GYG+TE C P            GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532

Query: 438 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 492
            G +    + RL  VP  E G         G + ++G  + +GY +   P +      + 
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583

Query: 493 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
                  GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+     +G +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               R  + +++  GE ++   +E +    P I  + VY 
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435

Length = 540

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS-LKSMLVA 558
            +  +G + + DRK++++ IS G  +    +E V    P + D  V+G  D+     L+A
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446

Query: 559 VVVP 562
           VV P
Sbjct: 447 VVEP 450

Length = 509

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 78/372 (20%), Positives = 114/372 (30%), Gaps = 95/372 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
           I++TSG++G PKGVV TH    TF + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
              VI        A++        +  +    +   P LL  V R  E+        L  
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200

Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
           LR            L RR    L           Y   EA P+A +              
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246

Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
           R V++     S E  E     C    V G               D   +    GP++ + 
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288

Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
              EL   EV             GE+ V G  +   YY  P+ T+ + I      W   G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVYCVA--PIIEDIWVYGD 550
           D+G     G +    RK + ++ + G                V   A   +       G 
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-------GK 388

Query: 551 SLKSMLVAVVVP 562
                 V VV P
Sbjct: 389 PGTQAPVLVVEP 400

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 385 LRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV 441
           LR+V    GAP   ++  F R   C  +V G+G TE  G      PD     +      V
Sbjct: 269 LRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDTPPGALGPLPPGV 324

Query: 442 SVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFH 496
           ++       E P      G     D   GE V   G   F GYY +P+   E +  G + 
Sbjct: 325 AIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYW 384

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           +GD+     +G      R  + +++  GE +    +E +    P   ++ VY 
Sbjct: 385 SGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA 436

Length = 529

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 49.9 bits (120), Expect = 3e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
            +GV+ ++ R  + I  + G  V  + +E      P + D  V+G   D L   +VA VV
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303

Query: 562 P 562
            
Sbjct: 304 G 304

Length = 358

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 383 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 438 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL 552
           F T D+G +   G + I+ R    I I+ GE V    +E       +++D+ V G  D  
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH 384

Query: 553 -KSMLVAVVVP 562
              ++ A+ VP
Sbjct: 385 WGEVVTAIYVP 395

Length = 452

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAH 277
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.7 bits (117), Expect = 7e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 388  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F       
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955

Query: 496  -HTGDIGQILPNGVVKIIDRKKNLIKI 521
              TGD+ +   +GV++ + R  + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--- 549
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D  V G   
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPD 304

Query: 550 DSLKSMLVAVV 560
           +     +VAVV
Sbjct: 305 ERWGQRVVAVV 315

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--------EMCMVG 436
           LRLV  GG+        F+  T      Q YGL+ET G T +C P         E   VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 437 TAGP-VSVYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
              P V VY           G  P           G + ++      GY+ NP+ T E +
Sbjct: 346 RPYPGVDVYLA------ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           IDGW +TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 400 IDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
                             PLA +L RV     FR G +           G+ H  L    
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
              M L  T+      V                   RR FD       + K+K   +   
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299

Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
                  P     + DL    +V A+     L+++   G+ LS E+     E F  V   
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
                 YG TE     T+  P+++    GT G       +++          LD+     
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397

Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I 
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453

Query: 521 ISQGEYVALEYLENVY 536
           +S G        ENV+
Sbjct: 454 VSGG--------ENVF 461

Length = 549

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 117/556 (21%), Positives = 189/556 (33%), Gaps = 145/556 (26%)

Query: 19  PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
           P   P +   L    +P     LN A ++    V    GNR          +     W T
Sbjct: 14  PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62

Query: 79  YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQ----WVEAMEACNALSLICVPLYD 133
           Y+++ +   +I   L    G  PG RV +  AN P     W+  ++A      I V    
Sbjct: 63  YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKA----GAIVVTTMP 118

Query: 134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
            L    +  I+D A I                           +C   LTA         
Sbjct: 119 LLRAKELTTIVDKARITHA------------------------LCDKRLTAAD------- 147

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                                      ++  I +TSGT+G PKG +  H  I   ++  D
Sbjct: 148 ---------------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICD 177

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMEL 311
            F  +   + T DDV++   PLA         + F  G  V +    G            
Sbjct: 178 AF-PRHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFG------------ 215

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
              +L                 LE+  P    +  A+ +++   +         +P A  
Sbjct: 216 ASAVL-----------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYR 249

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
               KVKA     LR  +S G  L  +V +++   T    ++ G G TE      +   +
Sbjct: 250 AMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANE 307

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           E    G  G PV  Y    +++      + +     G + VRG T     Y + +  +E 
Sbjct: 308 ENAKPGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEY 361

Query: 490 IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + DGW  TGDI +   +G    + R  ++I +S G  +A   +E+     P + +  V G
Sbjct: 362 VRDGWNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420

Query: 550 --DSLKSMLV-AVVVP 562
             D  +  +V A +V 
Sbjct: 421 VPDEERGQIVCAHIVL 436

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 45.6 bits (109), Expect = 7e-05
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 535 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
                P + D  V G   +     +VAVV  
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQL 479

Length = 533

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 551
              GD+G +  +G + + DRK ++I IS G  +  + +EN+    P + D+ V+G   + 
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 552 LKSMLVAVVVP 562
           +   + AVV P
Sbjct: 430 MGERVKAVVQP 440

Length = 502

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAH 277
              +  DDV Y+S +PL H
Sbjct: 189 G--LGPDDVCYVS-MPLFH 204

Length = 529

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 526 YVALEYLENVYCVAPIIEDIWVYG 549
            +  E +E+V    P +++I V G
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.8 bits (107), Expect = 1e-04
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.3 bits (103), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L + I   AP   +V+E +       + + Y  TE  G T     + +   GT G   ++
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRA-MF 335

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWFHTGDIGQ 502
            +L + +  +    P  +P  G +   G   F  Y  +P  T E+      W   GDIG 
Sbjct: 336 GDLHILD-DDGAELPPGEP--GTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGY 391

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +  +G + + DR   +I IS G  +  +  EN+    P + D  V+G   + L   + AV
Sbjct: 392 VDEDGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAV 450

Query: 560 VVP 562
           V P
Sbjct: 451 VQP 453

Length = 511

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 27/185 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            LR +I  G  L  ++ +EF        +V+ YG TE      +   +     G  G + 
Sbjct: 197 PLRKII--GNGLRPDIWDEFKERFGVPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLP 250

Query: 443 VYSELRLEEVPEMGYSPLDDPP--C--------GEVCVRGKTL--FSGYYKNPDLTRESI 490
             + + + +       P+ D    C        G +         F GY  +    ++ +
Sbjct: 251 -PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKIL 309

Query: 491 I------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
                  D +F+TGD+ +    G    +DR  +  +  +GE V+   +E V    P +E+
Sbjct: 310 RDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEE 368

Query: 545 IWVYG 549
             VYG
Sbjct: 369 ANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPL 275
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 497
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + D+ V G
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAVIG 434

Length = 501

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 459 PLDDPPCGEVCVR----GKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507
           P+ +P  GE+  R     + LF GY KN D T   ++       D W+ TGD+ +   +G
Sbjct: 295 PVGEP--GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               +DR  +  +  + E V+   + +V    P + +  VYG
Sbjct: 353 RWYFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E+  ++ + L   G +PG RV       P+ V A+ A   +  I VPL+   GP
Sbjct: 2   SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61

Query: 138 GAVNFILDHAEIDFVF 153
            A+ + L H+    V 
Sbjct: 62  KAIEYRLGHSGAKVVV 77

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 385  LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
            +R+ I+GG  L+ E ++   +          YG TET      C   E    G A  P+ 
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIG 2509

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--W 494
                 R+  + +   + +     GE+ V G  L  GY+  P LT E  +      DG   
Sbjct: 2510 RVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRL 2569

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKI 521
            + TGD+ ++  +G+V+ + R  + +KI
Sbjct: 2570 YRTGDLVRLRADGLVEYVGRIDHQVKI 2596

Length = 4334

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 23/170 (13%)

Query: 415 YGLTE-TCGPTTVCFPDEMCM------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 467
           YG TE T   T+V    E+        +G A P     ++ L  + E G  PL +   GE
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKP-----DMNLFIMDEEG-EPLPEGEKGE 344

Query: 468 VCVRGKTLFSGYYKNPDLTRESI--IDGW--FHTGDIGQILPNGVVKIIDRKKNLIKISQ 523
           + + G ++  GY  NP+ T E+    +G   + TGD G I  +G +    R    IK+  
Sbjct: 345 IVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKL-H 402

Query: 524 GEYVALEYLENVYCVAPIIED---IWVYGDSLK-SMLVAVVVPCEEDTKK 569
           G  + LE +E     +  IE    +  Y    K   L+A +VP  ED +K
Sbjct: 403 GYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEK 452

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 30/173 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ E+  ++ + ++         + +YG   P  + A           +P+ DT  P
Sbjct: 27  TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DTSIP 85

Query: 138 GA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++ A  + V          LS D    Q +         T    E A  +G  
Sbjct: 86  SERIEMIIEAAGPELVIH-----TAELSIDAVGTQII---------TLSALEQAETSGG- 130

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
           P S+D       V   +           I+YTSG++G+PKGV ++H+ + +F 
Sbjct: 131 PVSFDH-----AVKGDDNY--------YIIYTSGSTGNPKGVQISHDNLVSFT 170

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 29/203 (14%)

Query: 376 KVKARLGGR-LRLVISGGAPLSTEV-----EEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           +V+ R  GR LR   + G+ +  +V     ++F  V     +   Y  TE  G      P
Sbjct: 304 EVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDV-----IYNNYNATEA-GMIATATP 357

Query: 430 DEM-CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV---CVRGKTLFSGYYKNPDL 485
            ++     TAG  +  +E+R+ +          + P GEV    VR  T F GY      
Sbjct: 358 ADLRAAPDTAGRPAEGTEIRILD------QDFREVPTGEVGTIFVRNDTQFDGY--TSGS 409

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
           T++   DG+  +GD+G +  NG + ++ R   +I +S GE V    +E      P + + 
Sbjct: 410 TKD-FHDGFMASGDVGYLDENGRLFVVGRDDEMI-VSGGENVYPIEVEKTLATHPDVAEA 467

Query: 546 WVYG---DSLKSMLVAVVVPCEE 565
            V G   +     L A VV    
Sbjct: 468 AVIGVDDEQYGQRLAAFVVLKPG 490

Length = 537

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	620
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.96
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.94
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.94
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.93
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.91
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.75
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.72
PRK09188	365	serine/threonine protein kinase; Provisional	99.47
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.98
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.35
PLN02620	612	indole-3-acetic acid-amido synthetase	98.16
PLN02249	597	indole-3-acetic acid-amido synthetase	98.12
PLN02247	606	indole-3-acetic acid-amido synthetase	98.03
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	97.69
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.34
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	89.51
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	84.86
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	84.6

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=6.4e-86  Score=684.50  Aligned_cols=587  Identities=45%  Similarity=0.736  Sum_probs=530.2

Q ss_pred             CCceecCcc--CCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 007047           22 GPVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (620)
Q Consensus        22 ~~~~~~~~~--~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (620)
                      +++|||...  .++++..+.+..|+++.|.+.+..+|+.+++.++...+ ..++|+++||.|+.+++.+++..|++.|++
T Consensus        53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            379999999  57777888999999999999999999999999884323 568899999999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEc-chhHHHhcccccc-cccCccEEE
Q 007047          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMV  177 (620)
Q Consensus       100 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~vi  177 (620)
                      +++.|+|++-|++||+++.+||...|.++||++.+++++.++++++++++.++|++ ++....+.+.... ..+.++.+|
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 5667777666655 367899999


Q ss_pred             EecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccC-CCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhc
Q 007047          178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (620)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~  256 (620)
                      .++.............++.+++|+++.+.+....... .++.|+|.|.|.|||||||.|||||+||+|+++.+.......
T Consensus       212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~  291 (691)
T KOG1256|consen  212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS  291 (691)
T ss_pred             EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence            9999988877778888899999999999997666555 488999999999999999999999999999999766433222


Q ss_pred             ccccC-CCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHH
Q 007047          257 DQFED-KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (620)
Q Consensus       257 ~~~~~-~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (620)
                      ..... .....|++++++||.|++....-...+..|+++.+.++|+..+.+.+++.+||++.++|.+|+++.+.+.+...
T Consensus       292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~  371 (691)
T KOG1256|consen  292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ  371 (691)
T ss_pred             hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence            11111 22347999999999999999887777899999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHH-HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEee
Q 007047          336 ELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG  414 (620)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  414 (620)
                      ..+.+++.+|++|+..+. ..+..|.... ...++|.+.++++++.+|+++|.+++|++|+++++..+++..+|++|+++
T Consensus       372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG  450 (691)
T KOG1256|consen  372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG  450 (691)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence            999999999999999998 4455554333 68899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCC
Q 007047          415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG  493 (620)
Q Consensus       415 YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dg  493 (620)
                      ||+|||++.++...+.+. ..+++|.|+|+.+++++|+++.+....+.  .|||||+|+.||.|||+||+.|++++ .||
T Consensus       451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~--~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGS--KGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCCC--cceEEEecchhceeccCChHHHhhhhcccc
Confidence            999999977777777666 55999999999999999988888766653  79999999999999999999999999 999


Q ss_pred             cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHH
Q 007047          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYS  573 (620)
Q Consensus       494 w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~  573 (620)
                      |++|||+|+++++|.|++.||+|+++|+++|++|.|+.||++..+.+.|.+.+|.|...+.+++|+|+|+.+.+..|+..
T Consensus       528 WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~  607 (691)
T KOG1256|consen  528 WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAK  607 (691)
T ss_pred             ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999997


Q ss_pred             CCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccc
Q 007047          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDT  613 (620)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  613 (620)
                      ++......++|+++.+++.+..++-+..+.++++-.++.+
T Consensus       608 ~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk  647 (691)
T KOG1256|consen  608 DGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVK  647 (691)
T ss_pred             ccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEe
Confidence            7778889999999999999999999998877776655544

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.5e-84  Score=723.26  Aligned_cols=605  Identities=51%  Similarity=0.935  Sum_probs=496.4

Q ss_pred             cccceecccCCCCCCCCCCCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHH
Q 007047            2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE   81 (620)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~e   81 (620)
                      |-|-.++++++++.++.|.++++||+.....+++.....+.|+.++|.++++++||++|+.+....++..+.++++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            45678999999999999999999999988888876667778999999999999999999986410022234567799999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHH
Q 007047           82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (620)
Q Consensus        82 l~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  161 (620)
                      |.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             hcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeec
Q 007047          162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (620)
Q Consensus       162 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t  241 (620)
                      +..........++.++.+++............+....++++++..+...........++|+++|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            43322222223566777654322111111112334567888776543222222334689999999999999999999999


Q ss_pred             cHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechH
Q 007047          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR  321 (620)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~  321 (620)
                      |+|++..+......+......++.+|++++++|++|+++......+++.|+++++.+.++..+++.+++++||+++++|+
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887665433211112467899999999999999987666678899999988778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHH
Q 007047          322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE  401 (620)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~  401 (620)
                      +|+.+.+.+.......+.+.+.++.++++.+...+..+.......+..+.+.++++++.+++++|.+++||+++++++.+
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~  404 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES  404 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Confidence            99999987776666666677788888877665555443333344567778888889999989999999999999988755


Q ss_pred             HHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCC
Q 007047          402 FLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK  481 (620)
Q Consensus       402 ~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~  481 (620)
                      +++...++.++++||+||+++.++...+.+....+++|+|+||++++|+|+++++..+++.|+.|||+|+||+++.|||+
T Consensus       405 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~  484 (666)
T PLN02614        405 FLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK  484 (666)
T ss_pred             HHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccC
Confidence            55443358999999999998765554443333458999999999999998555544566678899999999999999999


Q ss_pred             ChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEE
Q 007047          482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV  561 (620)
Q Consensus       482 ~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv  561 (620)
                      +|+.|.++|.||||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|++++..++|+|+
T Consensus       485 ~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv  564 (666)
T PLN02614        485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIAN  564 (666)
T ss_pred             CHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEe
Confidence            99999999999999999999999999999999999999976899999999999999999999999999987789999999


Q ss_pred             cChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCC
Q 007047          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKV  606 (620)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  606 (620)
                      |+.+.+.+|++++++.....++++++++++.+++++.+..+.+++
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  609 (666)
T PLN02614        565 PNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKM  609 (666)
T ss_pred             CCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999988778889999999999999999887665544

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.2e-82  Score=707.27  Aligned_cols=609  Identities=78%  Similarity=1.304  Sum_probs=514.4

Q ss_pred             CcccceecccCCCCCCCCCCCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHH
Q 007047            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (620)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~   80 (620)
                      ||-++.++.+..++++++|+++++||+....+.++..++..+|+.++|.+.++++|+++|+.+....++..+.++++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            88899999988888899999999999988777777667789999999999999999999997651112334566789999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH
Q 007047           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (620)
Q Consensus        81 el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  160 (620)
                      |+.++++++|.+|.+.|+++||+|+|+++|++||++++|||+++|++++|+++.++.+++.+++++++++++|++.....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             HhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeee
Q 007047          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (620)
Q Consensus       161 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~  240 (620)
                      ..........+.++.++.+++............+....+|++++..+...........|+|+++++|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33222222234567777776543221111112234467888887665433333334578999999999999999999999


Q ss_pred             ccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEech
Q 007047          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (620)
Q Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P  320 (620)
                      ||+++...+.............++.+|++++++|++|.++......++..|+++++...++..+.+.+++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999988766433221111246789999999999999998776677899999998877889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHH
Q 007047          321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  400 (620)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~  400 (620)
                      .+|+.+.+.+.......++..+.+|+++.+.+..++..+.......+.++.+.++++++.+|+++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999888888888888999999999999988876654444567788889999999999999999999999999998


Q ss_pred             HHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccC
Q 007047          401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (620)
Q Consensus       401 ~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~  480 (620)
                      ++++...+..++++||+||+++.++...+......+++|.|.|+++++++++++.+..+.+.+..|||+|+|++++.|||
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            87776545789999999999887766655444445899999999999999866655556666678999999999999999


Q ss_pred             CChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEE
Q 007047          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (620)
Q Consensus       481 ~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v  560 (620)
                      ++|+.|.++|.||||+|||+|++|+||+|++.||+||+||+++|++|+|.+||++|.+||.|.+|+|+|+..++.++|+|
T Consensus       481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~v  560 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVV  560 (660)
T ss_pred             CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999998789999999999999999999999999977668999999


Q ss_pred             EcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccC
Q 007047          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFA  609 (620)
Q Consensus       561 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  609 (620)
                      +++++.+.+|++.++....+.++++++++++.+++++.+.++.+++...
T Consensus       561 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~  609 (660)
T PLN02430        561 VPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGF  609 (660)
T ss_pred             EcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999888777899999999999999999999876665433

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1e-81  Score=701.20  Aligned_cols=599  Identities=50%  Similarity=0.905  Sum_probs=495.7

Q ss_pred             eecccCCCCCCCCCCCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHH
Q 007047            6 AQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEE   85 (620)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~   85 (620)
                      ..+||---+++++|.++++||+....+.+...+.+..|+.++|.++++++|+++|+.+....++..++++++||+||.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~   86 (660)
T PLN02861          7 VKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA   86 (660)
T ss_pred             eeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH
Confidence            45677777888999999999999888888777788899999999999999999999763111333466788999999999


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhccc
Q 007047           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (620)
Q Consensus        86 ~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  165 (620)
                      ++++|++|.+.|+++||+|+|+++|++||++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+...
T Consensus        87 v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~  166 (660)
T PLN02861         87 AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSC  166 (660)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988766554333


Q ss_pred             ccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHH
Q 007047          166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (620)
Q Consensus       166 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l  245 (620)
                      .......++.++.+++.................+|++++..+... ....+..++|+++|+|||||||.||||++||+++
T Consensus       167 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l  245 (660)
T PLN02861        167 LPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAI  245 (660)
T ss_pred             hhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHH
Confidence            222222466777776432211111111233456788877544221 1223456899999999999999999999999999


Q ss_pred             HHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHH
Q 007047          246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEK  325 (620)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  325 (620)
                      +..+......+......+..+|++++++|++|+++....+.+++.|+++++.+.++..+++.+++++||+++++|++|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~  325 (660)
T PLN02861        246 IAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDR  325 (660)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHH
Confidence            98876654433111112467899999999999999876666899999999887789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHH
Q 007047          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (620)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  405 (620)
                      +.+.+.......+.+.+.+++++.+.+...+..+......++.++.++++++++.+|+++|.+++||+++++++.++++ 
T Consensus       326 l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-  404 (660)
T PLN02861        326 IYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-  404 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-
Confidence            9988888888888888999999998888777654434444567788889999999999999999999999999866554 


Q ss_pred             hcC-CeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChh
Q 007047          406 TCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  484 (620)
Q Consensus       406 ~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~  484 (620)
                      .++ ..++++||+||+++.++..........+++|+|+|+++++|+|+++.+......++.|||+|+|++++.|||++|+
T Consensus       405 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        405 VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            455 4799999999998766554433333458999999999999998544332333345689999999999999999999


Q ss_pred             hhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcCh
Q 007047          485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (620)
Q Consensus       485 ~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~  564 (620)
                      .|.++|.||||+|||+|++|+||+|+|.||+||+||+++|++|+|.+||++|.+||.|.+|+|+|.++++.++|+|+++.
T Consensus       485 ~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~  564 (660)
T PLN02861        485 LTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDR  564 (660)
T ss_pred             HHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCH
Confidence            99999999999999999999999999999999999976899999999999999999999999999987789999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCC
Q 007047          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKV  606 (620)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  606 (620)
                      +++.+|+.+++....+.+++++++++..+..++.+.++..++
T Consensus       565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  606 (660)
T PLN02861        565 QALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQL  606 (660)
T ss_pred             HHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            999999999876667889999999999999999988776544

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-77  Score=670.27  Aligned_cols=582  Identities=40%  Similarity=0.658  Sum_probs=482.8

Q ss_pred             CCCCCCCCceecCccCCCCCC---CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHH
Q 007047           16 DGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA   92 (620)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~   92 (620)
                      ..+.+++.+||+...+.++-+   .++...++.++|.++++++||++|+.+....++..+.++++||+||.++++++|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~   94 (651)
T PLN02736         15 KLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSG   94 (651)
T ss_pred             CCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHH
Confidence            345678899998876655533   24566799999999999999999996431003334567889999999999999999


Q ss_pred             HHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccC
Q 007047           93 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQR  172 (620)
Q Consensus        93 L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~  172 (620)
                      |.+.|+++||+|+|+++|++|++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ..+.
T Consensus        95 L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~~  173 (651)
T PLN02736         95 LVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIPS  173 (651)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999877665544332 3356


Q ss_pred             ccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhh
Q 007047          173 LRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV  252 (620)
Q Consensus       173 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~  252 (620)
                      ++.++..+.............+....+|+++++.............++|+++|+|||||||.||||++||++++..+...
T Consensus       174 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~  253 (651)
T PLN02736        174 VRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS  253 (651)
T ss_pred             ceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHH
Confidence            67777765432211111112234567888887654332222334578999999999999999999999999999988877


Q ss_pred             hhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHH
Q 007047          253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK  332 (620)
Q Consensus       253 ~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  332 (620)
                      ...+     ++.++|++++++|++|++++...+.+++.|+++++.+.++..+++.++++++|+++++|++|+.+.+.+..
T Consensus       254 ~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~  328 (651)
T PLN02736        254 SLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITN  328 (651)
T ss_pred             Hhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHH
Confidence            6655     67889999999999999999877788999999999888899999999999999999999999999998888


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeE
Q 007047          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLV  412 (620)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  412 (620)
                      .....+.+.+++++++...+...+..+   ......++.+.++..++.+++++|.+++||+++++++.+++++.+|++++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~  405 (651)
T PLN02736        329 AVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVL  405 (651)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeE
Confidence            888888888999988877766555433   12234567777888888888899999999999999999999988899999


Q ss_pred             eecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCC-CCCCCCCceEEEecCCcccccCCChhhhhccc-
Q 007047          413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  490 (620)
Q Consensus       413 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~-~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-  490 (620)
                      ++||+||+++.++...... ...+++|.|+||++++|+|.+++... ...+++.|||+|+||+++.|||++|+.|.+.| 
T Consensus       406 ~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~  484 (651)
T PLN02736        406 EGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID  484 (651)
T ss_pred             EEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence            9999999987766554433 34489999999999999984332110 11123479999999999999999999999999 


Q ss_pred             cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHH
Q 007047          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW  570 (620)
Q Consensus       491 ~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~  570 (620)
                      .||||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|....+.++|+|+++++.+.+|
T Consensus       485 ~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~  564 (651)
T PLN02736        485 EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAW  564 (651)
T ss_pred             cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHH
Confidence            69999999999999999999999999999976899999999999999999999999999765679999999999999999


Q ss_pred             HHHCCCC-CCHHHHhccHHHHHHHHHHHHHHHHHCCCc
Q 007047          571 AYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKVI  607 (620)
Q Consensus       571 ~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  607 (620)
                      ++.++.. ..+.++++++++++.+...|.+.++..++.
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  602 (651)
T PLN02736        565 AASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLR  602 (651)
T ss_pred             HHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Confidence            9888773 568889999999999999999887665553

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-77  Score=666.09  Aligned_cols=570  Identities=26%  Similarity=0.384  Sum_probs=461.6

Q ss_pred             CCCCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-
Q 007047           18 KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-   96 (620)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-   96 (620)
                      ..+++.+||..+..+.  ...+...||.++|.++++++|+++|+++.   + .++.|+++||+||.++++++|++|.+. 
T Consensus        39 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~  112 (746)
T PTZ00342         39 NENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYE  112 (746)
T ss_pred             CCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHh
Confidence            4455669997776666  34466889999999999999999999853   2 122468899999999999999999974 


Q ss_pred             --CCCCC-----------CEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhc
Q 007047           97 --GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL  163 (620)
Q Consensus        97 --gv~~g-----------d~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  163 (620)
                        |+++|           |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++|++++++++|++.+..+.+.
T Consensus       113 ~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~  192 (746)
T PTZ00342        113 GKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLL  192 (746)
T ss_pred             hcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHH
Confidence              99999           99999999999999999999999999999999999999999999999999999877776665


Q ss_pred             ccccccccCccEEEEecCCcHH-------------------H--------------------------------------
Q 007047          164 SPDCRSAQRLRVMVCFTSLTAE-------------------Q--------------------------------------  186 (620)
Q Consensus       164 ~~~~~~~~~~~~vi~~~~~~~~-------------------~--------------------------------------  186 (620)
                      ... ...+.++.+++++.....                   .                                      
T Consensus       193 ~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (746)
T PTZ00342        193 ERK-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL  271 (746)
T ss_pred             Hhh-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHH
Confidence            433 234567788887652110                   0                                      


Q ss_pred             HHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCC
Q 007047          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD  266 (620)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~  266 (620)
                      .......+.....|+++..... .........++|+|+|+|||||||.||||++||+|+++.+.......   .......
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~  347 (746)
T PTZ00342        272 KEKAKKLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNP  347 (746)
T ss_pred             HHHhhcCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCC
Confidence            0000011223344555543321 11223345789999999999999999999999999999886543321   0012355


Q ss_pred             cEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          267 DVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       267 d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      |++++++|++|++++...+.+++.|+++++.+.++..+++.+++++||+++++|.+|+.+.+.+.......+...+.+++
T Consensus       348 d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~  427 (746)
T PTZ00342        348 KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVK  427 (746)
T ss_pred             CeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            89999999999999987777899999999987789999999999999999999999999999888877778888889999


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHH--hHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCce
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  424 (620)
                      +++..+..... +.    .+..++.+  .++++++.+|+++|.+++||+++++++.++|+..+|++++++||+||+++.+
T Consensus       428 ~a~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~  502 (746)
T PTZ00342        428 KILSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI  502 (746)
T ss_pred             HHHHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCccccee
Confidence            98887766432 21    22333333  5788899999999999999999999999999988899999999999998776


Q ss_pred             eeccCCCccccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEE
Q 007047          425 TVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  502 (620)
Q Consensus       425 ~~~~~~~~~~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~  502 (620)
                      +...... ...+++|.|+ |+++++|+|.++....  ..+..|||+++||.++.|||++|+.|+++| .||||+|||+|+
T Consensus       503 ~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~--~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~  579 (746)
T PTZ00342        503 FVQHADD-NNTESIGGPISPNTKYKVRTWETYKAT--DTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQ  579 (746)
T ss_pred             eeccCCC-CCcccccCcCCCcEEEEEecccccccC--CCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEE
Confidence            6655433 3458999998 9999999984432222  223479999999999999999999999999 699999999999


Q ss_pred             EccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHHCC------C
Q 007047          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG------H  576 (620)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~~------~  576 (620)
                      +|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|+..+..++|+|+|+++.+.+|+++++      +
T Consensus       580 ~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i  659 (746)
T PTZ00342        580 INKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGI  659 (746)
T ss_pred             ECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCcccccc
Confidence            9999999999999999998789999999999999999999999999986567999999999999999998754      2


Q ss_pred             C-CCHHH-----HhccHHHHHHHHHHHHHHHHHCCC
Q 007047          577 A-GSFLE-----LCSLVQLQNYILSELKNAAERNKV  606 (620)
Q Consensus       577 ~-~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~  606 (620)
                      . ..+.+     .++++++++++.+++.+..+..++
T Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  695 (746)
T PTZ00342        660 NEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNL  695 (746)
T ss_pred             CcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCC
Confidence            1 23433     556778899999999888665444

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.1e-78  Score=639.69  Aligned_cols=536  Identities=36%  Similarity=0.578  Sum_probs=447.3

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ....++..++.++++.+|+.+|+...     ..+.|+.+||+|+..++.++|.+|++.|+..||+|+|++.|+++|+++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d   87 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD   87 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34578999999999999998888865     3678899999999999999999999999977999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecC---CcHHHHHHHhh--c
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS---LTAEQKEMAVQ--T  193 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~---~~~~~~~~~~~--~  193 (620)
                      +||+.+|++.||++++.+++++.++|++++++++|++...............+....++...+   ...........  .
T Consensus        88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (613)
T COG1022          88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFP  167 (613)
T ss_pred             HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccc
Confidence            999999999999999999999999999999999999986655443333221111111111111   00000000000  0


Q ss_pred             CCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCC-CCCCcEEEEe
Q 007047          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSF  272 (620)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~~~~  272 (620)
                      ..+...+ .+...  .......+..++|+|.|+|||||||.|||||+||+|+++++..+.+.+     . .+++|+++++
T Consensus       168 ~~~~~~~-~~~~~--~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~Lsf  239 (613)
T COG1022         168 DEGISLF-LIDSA--GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSF  239 (613)
T ss_pred             cccchhh-hhccc--ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEe
Confidence            0011111 11111  111222567899999999999999999999999999999999988876     5 7899999999


Q ss_pred             cChhHHHHHHHH-HHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          273 LPLAHILDRVIE-EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       273 ~pl~h~~g~~~~-~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      +|+.|++..... ...+..|+++.. ..++..+...+++++||+++++|.+|+.+.+.+.+.....+..++.+|+++.+.
T Consensus       240 LPlaHi~Er~~~~~~~~~~g~~~~~-~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~  318 (613)
T COG1022         240 LPLAHIFERAFEGGLALYGGVTVLF-KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKV  318 (613)
T ss_pred             CcHHHHHHHHHHHHHHhhcceEEEe-cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            999999998864 334545554444 449999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHh---hccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeecc
Q 007047          352 KLAWMN---MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (620)
Q Consensus       352 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  428 (620)
                      +...+.   .+..........+.+.++++++.+|.++|++++||+++++++..+++.. |+++.++||+||+++.++.++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~  397 (613)
T COG1022         319 AYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNP  397 (613)
T ss_pred             HHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEcc
Confidence            755443   2222222334488999999999999999999999999999999999985 899999999999999999988


Q ss_pred             CCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCC
Q 007047          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNG  507 (620)
Q Consensus       429 ~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG  507 (620)
                      +..... +++|.|+|+++++|+|             .|||+||||+||.|||++|++|+++| .||||+|||+|.+|++|
T Consensus       398 ~~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g  463 (613)
T COG1022         398 PDRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDG  463 (613)
T ss_pred             ccCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCC
Confidence            777666 9999999999999999             69999999999999999999999999 69999999999999999


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHHCCC--CCCHHHHhc
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH--AGSFLELCS  585 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~~~--~~~~~~~~~  585 (620)
                      +|++.||+||+||+++|++|.|+.||+.+.++|.|.+++|+| .++..++|+|+|+.+.+..|......  .....+++.
T Consensus       464 ~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~  542 (613)
T COG1022         464 YLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELAR  542 (613)
T ss_pred             cEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhh
Confidence            999999999999999999999999999999999999999999 55889999999999999999998875  357889999


Q ss_pred             cHHHHHHHHHHHHHHHHHC
Q 007047          586 LVQLQNYILSELKNAAERN  604 (620)
Q Consensus       586 ~~~~~~~~~~~i~~~~~~~  604 (620)
                      ++++.+.+.+++....+..
T Consensus       543 ~~~l~~~~~~~i~~~~~~~  561 (613)
T COG1022         543 DPKLLKLILPRVNKGNKRL  561 (613)
T ss_pred             CHHHHHHHHHHHHHHhhcc
Confidence            9999999999988775543

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-77  Score=593.06  Aligned_cols=584  Identities=36%  Similarity=0.643  Sum_probs=518.4

Q ss_pred             CCCCCCCceecCccCCCCCCCC-CCcccHHHHHHHHHHhCCCCceeEeeecc--------CCC------CCCceEeeHHH
Q 007047           17 GKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTYKE   81 (620)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~ti~~~l~~~a~~~pd~~al~~~~~~--------d~~------~~~~~~~Ty~e   81 (620)
                      +.+.++.+|||..+.+++-+++ +...|++++|.+.++++.++.++-+++..        ||+      -|.+.++||.|
T Consensus        15 ~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~e   94 (678)
T KOG1180|consen   15 ANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNE   94 (678)
T ss_pred             CCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHH
Confidence            3567899999999988888777 88899999999999999999999776431        221      24678999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCE-EEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH
Q 007047           82 VYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (620)
Q Consensus        82 l~~~~~~lA~~L~~~gv~~gd~-V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  160 (620)
                      +..++.++|++|.+.|++++++ ++|+++.+.+|+++++||++.+..+|-++.++..+.+.|-|.+++++.+|++.+.++
T Consensus        95 v~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~  174 (678)
T KOG1180|consen   95 VYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLP  174 (678)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHH
Confidence            9999999999999999997777 999999999999999999999999999999999999999999999999999999988


Q ss_pred             HhcccccccccCccEEEEecCCc----HHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcc
Q 007047          161 ELLSPDCRSAQRLRVMVCFTSLT----AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (620)
Q Consensus       161 ~~~~~~~~~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  236 (620)
                      .+.... .....++.+|.+++.+    .+.........+.+++++++++.+.....++.++.|+|+|+|+|||||||.||
T Consensus       175 kl~~~l-~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PK  253 (678)
T KOG1180|consen  175 KLKAPL-KQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPK  253 (678)
T ss_pred             HHHHHH-hccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCc
Confidence            664443 4558899999998532    22222223356899999999999988777777779999999999999999999


Q ss_pred             eeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-----Ch----HHHHHH
Q 007047          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DL----NALRDD  307 (620)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-----~~----~~~~~~  307 (620)
                      ||+++|.|+++.+.......    ..+++.|+++.++||.|++.+..-+.+++.|+.+-..+.     ..    ..---.
T Consensus       254 GVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD  329 (678)
T KOG1180|consen  254 GVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGD  329 (678)
T ss_pred             eEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCc
Confidence            99999999999998876654    267899999999999999999999999999999988653     11    122234


Q ss_pred             HhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEE
Q 007047          308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL  387 (620)
Q Consensus       308 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~  387 (620)
                      +..++||+|.++|.+|.++.+.+.+.....+.+.+.+|..++.-++..++.   .....++++.+.|++.++.+|.+||+
T Consensus       330 ~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lVFkKIr~~lGG~lR~  406 (678)
T KOG1180|consen  330 LTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALVFKKIRALLGGNLRY  406 (678)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHHHHHHHHHhCCceEE
Confidence            568999999999999999999999999999999999999998777666652   12237789999999999999999999


Q ss_pred             EEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCce
Q 007047          388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (620)
Q Consensus       388 i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Ge  467 (620)
                      +++||+|+++++++++.-.+++++.++||.||+++..+...+.+... +.+|.|++.++++++|.++++..+......||
T Consensus       407 ~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGE  485 (678)
T KOG1180|consen  407 ILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGE  485 (678)
T ss_pred             EEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCCce
Confidence            99999999999999999999999999999999999998888877666 89999999999999999888887776557899


Q ss_pred             EEEecCCcccccCCChhhhhccc--cCC--cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcc
Q 007047          468 VCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE  543 (620)
Q Consensus       468 i~v~g~~v~~gy~~~~~~t~~~~--~dg--w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~  543 (620)
                      |||+|+++..||++||+.|.+.|  .||  ||+|||+|++.+||+|.+.+|++|++|+.+|+.|+++-+|.+++..|.|.
T Consensus       486 I~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~  565 (678)
T KOG1180|consen  486 ILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVD  565 (678)
T ss_pred             EEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchh
Confidence            99999999999999999999999  489  99999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCceEEEEEEcChHHHHHHHHHCCCCC-CHHHHhccHHHHHHHHHHHHHHHHHCCCccC
Q 007047          544 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG-SFLELCSLVQLQNYILSELKNAAERNKVIFA  609 (620)
Q Consensus       544 ~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  609 (620)
                      ..+|+++.....++|+|||++..+..++.+.++.. .+.++|.+.++.+.+.+++.++++.+++.-.
T Consensus       566 NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~i  632 (678)
T KOG1180|consen  566 NICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERI  632 (678)
T ss_pred             heEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999889999999999999999999999855 8999999999999999999999988877544

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.8e-76  Score=660.23  Aligned_cols=580  Identities=34%  Similarity=0.584  Sum_probs=474.3

Q ss_pred             CCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeecc--------CC------CCCCceEeeHHHHHHHHH
Q 007047           22 GPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DG------KFGPYVWKTYKEVYEEVL   87 (620)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~--------d~------~~~~~~~~Ty~el~~~~~   87 (620)
                      +.+|||...+.......+..+|+.++|.++++++||++|+.+....        ++      ..++|+++||+|+.++++
T Consensus        38 ~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~  117 (696)
T PLN02387         38 GYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVC  117 (696)
T ss_pred             CCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHH
Confidence            3359999966333334467789999999999999999999643100        11      125678899999999999


Q ss_pred             HHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhccccc
Q 007047           88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC  167 (620)
Q Consensus        88 ~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~  167 (620)
                      ++|++|.+.|+++||+|+|+++|++||++++|||+++|+++||+++.++.+++.++|++++++++|++.+....+.... 
T Consensus       118 ~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~-  196 (696)
T PLN02387        118 NFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS-  196 (696)
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987776654433 


Q ss_pred             ccccCccEEEEecCCcHHHHHH-HhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHH
Q 007047          168 RSAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA  246 (620)
Q Consensus       168 ~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~  246 (620)
                      ...+.++.++.+++........ .........+|+++...+...........++|+++|+|||||||.||||++||++++
T Consensus       197 ~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~  276 (696)
T PLN02387        197 SQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIV  276 (696)
T ss_pred             hccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHH
Confidence            2345677888887543211100 012234566788887765433333344578999999999999999999999999999


Q ss_pred             HHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC----C-----hHHHHHHHhhcCCcEEE
Q 007047          247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTLLA  317 (620)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~~~  317 (620)
                      ..+......+    ..+..+|++++++|++|++++.....++..|+++.+...    +     +..+...+++++||++.
T Consensus       277 ~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~  352 (696)
T PLN02387        277 ATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMT  352 (696)
T ss_pred             HHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEE
Confidence            8887654432    146789999999999999998876667778888766432    1     23456689999999999


Q ss_pred             echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc--CCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCC
Q 007047          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY--KQREASPLADLLAFRKVKARLGGRLRLVISGGAPL  395 (620)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l  395 (620)
                      ++|++++.+.+.........+.+.+.+++.+...+...+...+  .....+.+++.+.++++++.+|+++|.+++||+++
T Consensus       353 ~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl  432 (696)
T PLN02387        353 AVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPL  432 (696)
T ss_pred             ehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCC
Confidence            9999999999888777777777888889888876655543211  11335678889999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCC-CCCCCceEEEecCC
Q 007047          396 STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKT  474 (620)
Q Consensus       396 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~-~~g~~Gei~v~g~~  474 (620)
                      ++++.++++..+|++++++||+||+++.++....... ..+++|.|+|+++++|+|.++++.... .++..|||+|+||+
T Consensus       433 ~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~  511 (696)
T PLN02387        433 SGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPS  511 (696)
T ss_pred             CHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCc
Confidence            9999999888889999999999999887766554433 348999999999999999555443222 23347999999999


Q ss_pred             cccccCCChhhhhcccc---CC--cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEe
Q 007047          475 LFSGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG  549 (620)
Q Consensus       475 v~~gy~~~~~~t~~~~~---dg--w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~  549 (620)
                      ++.|||++|+.|.++|.   +|  ||+|||+|++|+||+|++.||+||+||+++|++|+|.+||++|.+||.|.+|+|+|
T Consensus       512 v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g  591 (696)
T PLN02387        512 VTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHA  591 (696)
T ss_pred             ccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEe
Confidence            99999999999999982   35  99999999999999999999999999987799999999999999999999999999


Q ss_pred             cCCCceEEEEEEcChHHHHHHHHHCCCC-CCHHHHhccHHHHHHHHHHHHHHHHHCCCc
Q 007047          550 DSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKVI  607 (620)
Q Consensus       550 ~~~~~~~~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  607 (620)
                      ++.+..++|+|+|+++.+..|+++++.. ..+.++|+++++++.+.+.+.+.++.+++.
T Consensus       592 ~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  650 (696)
T PLN02387        592 DPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLE  650 (696)
T ss_pred             cCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCC
Confidence            9878899999999999999999998873 568999999999999999999987766543

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.8e-74  Score=642.60  Aligned_cols=577  Identities=30%  Similarity=0.496  Sum_probs=464.6

Q ss_pred             CCCCCCceecCccCC----CCCCCCCCcccHHHHHHHHHHhCCCCceeEeeecc----------CCC--------CCCce
Q 007047           18 KPSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV----------DGK--------FGPYV   75 (620)
Q Consensus        18 ~~~~~~~~~~~~~~~----~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~----------d~~--------~~~~~   75 (620)
                      .+..+++||.....+    .+.....+..|+.++|.++++++||++|+.+....          ++.        .++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (700)
T PTZ00216         41 TENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETR  120 (700)
T ss_pred             CCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCce
Confidence            345688999866443    33333345679999999999999999999985100          111        12568


Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEc
Q 007047           76 WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ  155 (620)
Q Consensus        76 ~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~  155 (620)
                      ++||+||.++++++|++|.+.|+++||+|+|+++|++||++++|||+++|++++|+++.++.+++.+++++++++++|++
T Consensus       121 ~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~  200 (700)
T PTZ00216        121 YITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCN  200 (700)
T ss_pred             EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCcc--Cc-ccCCCCCCCCeEEEEecCCCC
Q 007047          156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NE-MEILPPQPFNICTIMYTSGTS  232 (620)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~a~i~~TSGTT  232 (620)
                      ......+.............++.+++....    .........+|++++..+..  .. ....+..++|+++++||||||
T Consensus       201 ~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTT  276 (700)
T PTZ00216        201 GKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTT  276 (700)
T ss_pred             HHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCC
Confidence            876655433322111112245555442211    11123456788888766521  11 112344789999999999999


Q ss_pred             CCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHH------
Q 007047          233 GDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------  306 (620)
Q Consensus       233 G~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~------  306 (620)
                      |.||||++||+|+++.+......+.........+|++++++|++|+++......++..|+++++.  ++..+.+      
T Consensus       277 G~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~  354 (700)
T PTZ00216        277 GDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPH  354 (700)
T ss_pred             CcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhcccc
Confidence            99999999999999988765543311111246789999999999999987666667888877663  4555554      


Q ss_pred             -HHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcE
Q 007047          307 -DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (620)
Q Consensus       307 -~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  385 (620)
                       .+++++||++.++|++|+.+.+.........+.+.+.+|+.+...+...+..+.    ..+.++.+.++..++.+|+++
T Consensus       355 ~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~l  430 (700)
T PTZ00216        355 GDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRV  430 (700)
T ss_pred             chHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcE
Confidence             688999999999999999999988877777788888899988887766655431    345678888999999999999


Q ss_pred             EEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCC
Q 007047          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (620)
Q Consensus       386 r~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~  465 (620)
                      |.+++||+++++++.++++..++ +++++||+||+++.++....... ..+++|+|+||++++|+| +++......++..
T Consensus       431 r~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~  507 (700)
T PTZ00216        431 RAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPR  507 (700)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCC
Confidence            99999999999999998888778 99999999999876665544332 348999999999999999 4443233334567


Q ss_pred             ceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcce
Q 007047          466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  544 (620)
Q Consensus       466 Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~  544 (620)
                      |||+|+|++++.|||++|+.|.+.| .||||+|||+|++|+||+|+|+||+||+||..+|++|+|.+||++|.+||.|.+
T Consensus       508 GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~  587 (700)
T PTZ00216        508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVP  587 (700)
T ss_pred             ceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCccc
Confidence            9999999999999999999999999 799999999999999999999999999998558999999999999999999997


Q ss_pred             --EEEEecCCCceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCc
Q 007047          545 --IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVI  607 (620)
Q Consensus       545 --~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  607 (620)
                        ++|+..+++..++|+|+++.+.+.+|+++++....+.++++++++++.+.+++.+..+.++++
T Consensus       588 ~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  652 (700)
T PTZ00216        588 NGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRK  652 (700)
T ss_pred             ceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Confidence              466666667899999999999999999999887788999999999999999999987765553

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.5e-72  Score=585.71  Aligned_cols=481  Identities=28%  Similarity=0.391  Sum_probs=387.3

Q ss_pred             HHHHhCCCC-ceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEcCCcHhHHHHHHHHHhCCC
Q 007047           50 MSVQKYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEACNALSL  126 (620)
Q Consensus        50 ~~a~~~pd~-~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~g--v~~gd~V~i~~~n~~e~~~~~lA~~~~G~  126 (620)
                      +.+..++++ +.+++.   +.. |  +.+||+|+++++.++|.+|.+.|  +++||+|++++||+++++++++||+.+|+
T Consensus        24 ~~~~~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga   97 (537)
T KOG1176|consen   24 RPAFVYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGA   97 (537)
T ss_pred             ccccccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence            344455555 777765   321 1  57999999999999999999875  89999999999999999999999999999


Q ss_pred             EEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee-HHHHHh
Q 007047          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-WDEFLH  205 (620)
Q Consensus       127 v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~l~~  205 (620)
                      +..++||.+...++.+.+++++++++|++.+....+.+......   ..++++......   ..........+ +..+..
T Consensus        98 ~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~  171 (537)
T KOG1176|consen   98 VLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGV---ISISDLVEDLDAFEDLMP  171 (537)
T ss_pred             cccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCc---cccccccccccchhhccc
Confidence            99999999999999999999999999999999887765554322   344444432100   00000111112 333333


Q ss_pred             cCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHH
Q 007047          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE  285 (620)
Q Consensus       206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~  285 (620)
                      ......  ..+...+|++.++|||||||.||||++||++++.+........     .+...|+.++.+|++|.+|+...+
T Consensus       172 ~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~  244 (537)
T KOG1176|consen  172 EGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLL  244 (537)
T ss_pred             cCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHH
Confidence            221111  4556779999999999999999999999999999977655544     567799999999999999999877


Q ss_pred             H-HhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007047          286 Y-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (620)
Q Consensus       286 ~-~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (620)
                      . .+..|+++++.+. +++.+++.+++|++|+++++|.++..+++.                                  
T Consensus       245 ~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~----------------------------------  290 (537)
T KOG1176|consen  245 LSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS----------------------------------  290 (537)
T ss_pred             HHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC----------------------------------
Confidence            7 5666666777666 999999999999999999999999998752                                  


Q ss_pred             CchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEeecCCCCCCCceeeccCCCccccCccccCc
Q 007047          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (620)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~  442 (620)
                         +.....++        ++++.+.+||+++++++.+.+++.++ ..+.++||+||+++.++.+...+..+++++|.++
T Consensus       291 ---p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~  359 (537)
T KOG1176|consen  291 ---PIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLL  359 (537)
T ss_pred             ---CccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccc
Confidence               22333334        39999999999999999999999998 8999999999999887777665545669999999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC-CcccccceEEEccCCcEEEeecccCeEEc
Q 007047          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIKI  521 (620)
Q Consensus       443 ~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d-gw~~TGDl~~~~~dG~l~~~GR~~d~i~~  521 (620)
                      +++.+++.+ +.+.  ..++++.||||++|+.++.||++||++|.+.|.+ |||+|||+|++|+||+|++.+|++|+||.
T Consensus       360 ~g~~~~v~~-e~g~--~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~  436 (537)
T KOG1176|consen  360 PGVRVKVLD-ETGV--SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY  436 (537)
T ss_pred             cceEEEeeC-CCCC--CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee
Confidence            998888887 5554  4455679999999999999999999999999955 99999999999999999999999999997


Q ss_pred             CCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh------HHHHHHHHHCCCCC-------CHHHHhc
Q 007047          522 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE------EDTKKWAYSNGHAG-------SFLELCS  585 (620)
Q Consensus       522 ~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~------~~~~~~~~~~~~~~-------~~~~~~~  585 (620)
                       +|++|+|.|||++|.+||.|.||+|+|.+|+   +.++|+||+++      +++.+|++.+....       ..+++++
T Consensus       437 -~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPK  515 (537)
T KOG1176|consen  437 -GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPK  515 (537)
T ss_pred             -CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCC
Confidence             8999999999999999999999999999986   59999999864      77777777776521       1445555


Q ss_pred             cH--HHHHHHHHHHH
Q 007047          586 LV--QLQNYILSELK  598 (620)
Q Consensus       586 ~~--~~~~~~~~~i~  598 (620)
                      ++  |+.+..++++-
T Consensus       516 s~~GKi~R~~lr~~~  530 (537)
T KOG1176|consen  516 TPNGKILRRKLRDIA  530 (537)
T ss_pred             CCcchHHHHHHHHHH
Confidence            54  66555554443

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=5.2e-72  Score=545.32  Aligned_cols=475  Identities=23%  Similarity=0.294  Sum_probs=408.3

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc
Q 007047           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (620)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~  111 (620)
                      .|-...|-+..|++++++..+++.||+.|+++.   ...    .++||+|+.+.++++|.+|.+.|+++||||++..||+
T Consensus        40 ~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~  112 (596)
T KOG1177|consen   40 HGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNS  112 (596)
T ss_pred             CCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCCh
Confidence            344455778899999999999999999999987   222    4599999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH-----Hhcc------------cccccccCcc
Q 007047          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS------------PDCRSAQRLR  174 (620)
Q Consensus       112 ~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~------------~~~~~~~~~~  174 (620)
                      .+|+.++|||.++|.+.+++||.+...++++.|++.+++++|+...+..     .+.+            .-.+.++.+.
T Consensus       113 ~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lt  192 (596)
T KOG1177|consen  113 YEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELT  192 (596)
T ss_pred             HHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccce
Confidence            9999999999999999999999999999999999999999999775421     1111            1123456778


Q ss_pred             EEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCc-----ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHh
Q 007047          175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE-----MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV  249 (620)
Q Consensus       175 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~  249 (620)
                      ++|..++...         -.+.+.++|++..++.+.     .......|+|++.|.|||||||.|||+-+||.|++++.
T Consensus       193 hvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna  263 (596)
T KOG1177|consen  193 HVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNA  263 (596)
T ss_pred             EEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhH
Confidence            8887773322         225677888887776532     12334578999999999999999999999999999999


Q ss_pred             hhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHH
Q 007047          250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKI  326 (620)
Q Consensus       250 ~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l  326 (620)
                      ......+     ++..++++++..|++|.+|.. .++.++..|++++++.+  ++...++.|.++++|.++++|+|+..+
T Consensus       264 ~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dl  338 (596)
T KOG1177|consen  264 RAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDL  338 (596)
T ss_pred             HHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHH
Confidence            9888777     888899999999999999965 57889999999999875  999999999999999999999999998


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHh
Q 007047          327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT  406 (620)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  406 (620)
                      ++..                                     .....+++        ++|.++.||+++|+++.+.+...
T Consensus       339 ln~~-------------------------------------~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv~~  373 (596)
T KOG1177|consen  339 LNIP-------------------------------------QKQQVDLS--------SLRKGVIGGAPVSPELLKLIVNQ  373 (596)
T ss_pred             hcch-------------------------------------hhccCchh--------hhhhheeCCCCCCHHHHHHHHHh
Confidence            7532                                     23334444        89999999999999999999886


Q ss_pred             cCC-eeEeecCCCCCCCceeeccCCC--ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCCh
Q 007047          407 CCA-FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP  483 (620)
Q Consensus       407 ~~~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~  483 (620)
                      .++ .+..+||+||++...+....++  .....++|+.+++.+..++| .++...+.+  ..|||++||.+.+.|||+++
T Consensus       374 ~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~  450 (596)
T KOG1177|consen  374 MNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEE  450 (596)
T ss_pred             hCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCc
Confidence            664 4778999999999888877665  34457999999999999999 777766666  57999999999999999999


Q ss_pred             hhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEE
Q 007047          484 DLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAV  559 (620)
Q Consensus       484 ~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~  559 (620)
                      +.|.++. .|.||+|||+|.+|++|+++++||.+|+|+ ++|++|+|.|||+.|.+||.|.+|.|+|.+|+   +.++|+
T Consensus       451 ~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~  529 (596)
T KOG1177|consen  451 EKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCAC  529 (596)
T ss_pred             ccchhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEE
Confidence            9999998 899999999999999999999999999998 69999999999999999999999999999986   588899


Q ss_pred             EEcC--------hHHHHHHHHHCCC
Q 007047          560 VVPC--------EEDTKKWAYSNGH  576 (620)
Q Consensus       560 vv~~--------~~~~~~~~~~~~~  576 (620)
                      |-+.        .|++++||+.+..
T Consensus       530 vRLqe~~e~~~t~E~lKa~Ck~kla  554 (596)
T KOG1177|consen  530 VRLQEGAEGKTTAETLKAMCKGKLA  554 (596)
T ss_pred             EEeeccccccccHHHHHHHHhcccc
Confidence            8763        4789999998843

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.6e-69  Score=564.90  Aligned_cols=483  Identities=21%  Similarity=0.239  Sum_probs=393.5

Q ss_pred             HHHHHHHHHh-CCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 007047           45 WDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACN  122 (620)
Q Consensus        45 ~~~l~~~a~~-~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~  122 (620)
                      ..+++++.+. .+|+.|+++.   ++..+. +.+||+||.+.++++|+.|++ .|+ +||||++++|+.+|.++++|||+
T Consensus        12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365          12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            4467777764 5789999997   544334 899999999999999999987 578 99999999999999999999999


Q ss_pred             hCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccc--cCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       123 ~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      ++|++.+|+.+.++++.+...+++++++++|+++....+.........  .-+..+++....             . ..|
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-------------~-~~~  152 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-------------G-LWY  152 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-------------c-ccH
Confidence            999999999999999999999999999999998876553321111000  000002222221             1 567


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +++....+.. ....+...+|+++++|||||||+||||+++|..++..........    ..+.++|++++..++.|..|
T Consensus       153 ~~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~----~~~~~~Dv~w~~ad~GW~~g  227 (528)
T COG0365         153 DEAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH----GDLLPGDRFWNSSDPGWIYG  227 (528)
T ss_pred             HHHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHh----hCCCCCCEEEeCCCchhhhC
Confidence            7777655332 233448899999999999999999999999998887776554422    26779999999999999999


Q ss_pred             HHH-HHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047          281 RVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (620)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (620)
                      ... ++.+|..|++++++++    +++.+++.++++++|+++..|+.++.|.+.-.                        
T Consensus       228 ~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~------------------------  283 (528)
T COG0365         228 LWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL------------------------  283 (528)
T ss_pred             chHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC------------------------
Confidence            986 7789999999999876    28899999999999999999999999875211                        


Q ss_pred             HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcccc
Q 007047          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (620)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~  435 (620)
                                   .+..+++        +||.+.++|||+++++.+|+.+.+|++|.+.||+||++++.....+ ... +
T Consensus       284 -------------~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~-~  340 (528)
T COG0365         284 -------------GEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVK-N  340 (528)
T ss_pred             -------------cccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcC-C
Confidence                         2333444        9999999999999999999999999999999999999965555444 323 3


Q ss_pred             CccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC--CcccccCCChhhhhccccCCcccccceEEEccCCcEEEee
Q 007047          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       436 ~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~--~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                      ++.|.|+||+++.++| ++++  +++.++ |+|+++.+  +++.+||+||+.+.+++.+.||.|||.+++|+||+++|+|
T Consensus       341 g~~g~p~pG~~~~vvd-d~g~--~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~G  416 (528)
T COG0365         341 GSSGLPLPGYAVRRVD-DEGN--PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHG  416 (528)
T ss_pred             CCCCCCCCCceeEEEC-CCCC--cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEe
Confidence            6669999999999999 6644  444556 99999986  8999999999999999966699999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHH
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (620)
                      |.||+||+ .|++|.+.|||++|.+||.|.||+|||.+|.   +.+.|||+++++.-...+              ..+++
T Consensus       417 R~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L--------------~~ei~  481 (528)
T COG0365         417 RSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNEL--------------AEEIR  481 (528)
T ss_pred             eccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHH--------------HHHHH
Confidence            99999997 6999999999999999999999999998874   479999999764311111              22777


Q ss_pred             HHHHHHHHHHHHHCCCccCCccccccc
Q 007047          591 NYILSELKNAAERNKVIFANWDTGCFS  617 (620)
Q Consensus       591 ~~~~~~i~~~~~~~~~~~~~~~~~~~~  617 (620)
                      +++++.+..++.|++|.+++-.|++.|
T Consensus       482 ~~vr~~~~~~~~p~~i~fv~~LPkT~s  508 (528)
T COG0365         482 RHVARNIGPHAIPRKIRFVDELPKTAS  508 (528)
T ss_pred             HHHHhccCcccCCceEEEecCCCCCCc
Confidence            888888877888888888888888765

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.3e-69  Score=586.12  Aligned_cols=464  Identities=29%  Similarity=0.425  Sum_probs=382.3

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ....++.++|.++++++|+++|+++.   +..    .++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45589999999999999999999986   432    15999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCce-
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-  197 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-  197 (620)
                      |||+++|++++|+||.+...++.+++++++++.++++........... ...+....+........           .. 
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~  148 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA-EALPVVLVVLLVGDADD-----------RLP  148 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHh-ccCCcceEEEecccccc-----------ccc
Confidence            999999999999999999999999999999999999987433322222 11122222222221110           00 


Q ss_pred             eeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCC--CCCCcEEEEecCh
Q 007047          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL  275 (620)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~--~~~~d~~~~~~pl  275 (620)
                      .+++++...............++|+++++|||||||.||||++||+|++.+.......+     .  ++.+|++++++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl  223 (534)
T COG0318         149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL  223 (534)
T ss_pred             ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence            24555533322222222236799999999999999999999999999999988877766     5  8899999999999


Q ss_pred             hHHHHHHHHHH-HhhcCcEEEEec---CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          276 AHILDRVIEEY-FFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       276 ~h~~g~~~~~~-~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      +|.+|+...+. +++.|+++++.+   .++..++..+.++++|++.++|+++..++......                  
T Consensus       224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~------------------  285 (534)
T COG0318         224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD------------------  285 (534)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC------------------
Confidence            99999987555 599999999987   38999999999999999999999999977532211                  


Q ss_pred             HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEeecCCCCCCCceeeccCC
Q 007047          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPD  430 (620)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~  430 (620)
                                         ..+++       +++|.+++||+++++++.+.+++.|+ ..++++||+||++..++.....
T Consensus       286 -------------------~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  339 (534)
T COG0318         286 -------------------DDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD  339 (534)
T ss_pred             -------------------ccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence                               00111       13999999999999999999999887 5799999999999887777666


Q ss_pred             C-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC-CcccccceEEEccCCc
Q 007047          431 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGV  508 (620)
Q Consensus       431 ~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d-gw~~TGDl~~~~~dG~  508 (620)
                      . ....+++|.|+|+++++|+| ++++ .+.+ |+.|||+|+||+++.|||++|+.|.++|.+ |||+|||+|++|+||+
T Consensus       340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~  416 (534)
T COG0318         340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY  416 (534)
T ss_pred             hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCcc
Confidence            5 23557889999999999999 5555 3333 679999999999999999999999998875 9999999999999999


Q ss_pred             EEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC--------hHHHHHHHHHC
Q 007047          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC--------EEDTKKWAYSN  574 (620)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~--------~~~~~~~~~~~  574 (620)
                      ++|.||.+|+|+. +|+||+|.|||+++.+||.|.+|+|+|.+|+   +.++|+|+++        ++++.++++.+
T Consensus       417 l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~  492 (534)
T COG0318         417 LYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKR  492 (534)
T ss_pred             EEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhh
Confidence            9999999999996 8999999999999999999999999999875   5999999985        35566666553

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.2e-66  Score=574.57  Aligned_cols=517  Identities=18%  Similarity=0.222  Sum_probs=389.2

Q ss_pred             CCcccHHHHHHHHHHh--CCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           39 SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~--~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      ...++..++|+++++.  +||++|+++.   ....+..+++||+||.++++++|+.|++.|+++||+|+++++|++++++
T Consensus        56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~  132 (647)
T PTZ00237         56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI  132 (647)
T ss_pred             CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence            4557788899888765  7999999885   3323334789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchh---------HHHhcccccccccCccEEEEecCCc----
Q 007047          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT----  183 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~vi~~~~~~----  183 (620)
                      ++|||+++|++++|+++.++.+++.+++++++++++|+++..         ...+.+...........++......    
T Consensus       133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~  212 (647)
T PTZ00237        133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE  212 (647)
T ss_pred             HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence            999999999999999999999999999999999999997631         1212111110101123444432110    


Q ss_pred             HHHHHH-HhhcCCceeeHHHHHhcCcc----CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHh-hhhhhhcc
Q 007047          184 AEQKEM-AVQTGIKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLD  257 (620)
Q Consensus       184 ~~~~~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~  257 (620)
                      ...... ..........|++++.....    .........++|+++|+|||||||.||||+++|.+.+... ......+ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-  291 (647)
T PTZ00237        213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII-  291 (647)
T ss_pred             cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence            000000 00000123457776543211    1112234578999999999999999999999999843333 2222222 


Q ss_pred             cccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCC-------hHHHHHHHhhcCCcEEEechHHHHHHHHHH
Q 007047          258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (620)
Q Consensus       258 ~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  330 (620)
                          ....+|++++..|+.|..+....+.+++.|+++++++++       +..+++.++++++|+++++|++++.+.+..
T Consensus       292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  367 (647)
T PTZ00237        292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD  367 (647)
T ss_pred             ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence                566789999999999987665677789999999998752       578999999999999999999999886521


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCe
Q 007047          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF  410 (620)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  410 (620)
                      ....                                ......++        ++||.+++||+++++++.+++++.+|++
T Consensus       368 ~~~~--------------------------------~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~~  407 (647)
T PTZ00237        368 PEAT--------------------------------IIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKIK  407 (647)
T ss_pred             cccc--------------------------------ccccccCc--------chheEEEecCccCCHHHHHHHHHhcCCC
Confidence            1000                                00011122        3899999999999999999999989999


Q ss_pred             eEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC---CcccccCCChhhhh
Q 007047          411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTR  487 (620)
Q Consensus       411 v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~---~v~~gy~~~~~~t~  487 (620)
                      +++.||+||+++.++..........+++|.|+||++++|+| +++..  ++.|+.|||++++|   +++.|||++++.+.
T Consensus       408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~--~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~  484 (647)
T PTZ00237        408 SSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKE--LNVNEIGEVAFKLPMPPSFATTFYKNDEKFK  484 (647)
T ss_pred             EEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCC--CCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence            99999999998765543332223337899999999999999 66554  44568999999986   78999999999999


Q ss_pred             cccc--CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc
Q 007047          488 ESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (620)
Q Consensus       488 ~~~~--dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~  562 (620)
                      +.|.  +|||+|||+|++|+||+++++||+||+||+ +|++|+|.|||++|.+||.|.||+|+|.+++   +.++|+|++
T Consensus       485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~  563 (647)
T PTZ00237        485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVL  563 (647)
T ss_pred             HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEe
Confidence            8773  799999999999999999999999999997 7999999999999999999999999998864   589999998


Q ss_pred             ChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccccc
Q 007047          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCF  616 (620)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  616 (620)
                      +++.-       .......++  ..++++++.+++.++..|+++.+++-.|++.
T Consensus       564 ~~~~~-------~~~~~~~~l--~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~  608 (647)
T PTZ00237        564 KQDQS-------NQSIDLNKL--KNEINNIITQDIESLAVLRKIIIVNQLPKTK  608 (647)
T ss_pred             ccCcc-------ccCCCHHHH--HHHHHHHHHhhcCccccCcEEEEcCCCCCCC
Confidence            64210       000001111  1266777777888888888888888777654

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.1e-64  Score=562.04  Aligned_cols=498  Identities=21%  Similarity=0.268  Sum_probs=393.4

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++|+++|+++.   + ..+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  113 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA  113 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            478999999999999999999864   3 234467899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCC-----hhHHHHHHhhcCccEEEEcchh-HHHhcccccccccCccEEEEecCCcHHHHHHHhhcC
Q 007047          121 CNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (620)
                      |+++|++++|+++.++     .+++.+++++++++++|+++.. ..........  ... .++.......         .
T Consensus       114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~  181 (614)
T PRK08180        114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------G  181 (614)
T ss_pred             HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------C
Confidence            9999999999999988     7899999999999999998642 1111111111  112 2232222110         0


Q ss_pred             CceeeHHHHHhcCccCc--ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCC--CCcEEE
Q 007047          195 IKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYL  270 (620)
Q Consensus       195 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~~~  270 (620)
                      ....+|++++.......  .......++|+++|+|||||||.||||++||++++..+......+     ...  .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l  256 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV  256 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence            01245666654321111  111234689999999999999999999999999998887665544     332  568999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007047          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (620)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (620)
                      +++|++|.+++.. .+.+++.|+++++.+.     .+..+++.++++++|+++++|++|..|++.+.....         
T Consensus       257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~---------  327 (614)
T PRK08180        257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA---------  327 (614)
T ss_pred             EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh---------
Confidence            9999999999764 5668999999998753     345778899999999999999999998765432100         


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHh----cC--CeeEeecCCC
Q 007047          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLT  418 (620)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~--~~v~~~YG~T  418 (620)
                                              ...        ...+++|.+++||+++++++.+++.+.    +|  +++++.||+|
T Consensus       328 ------------------------~~~--------~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  375 (614)
T PRK08180        328 ------------------------LRR--------RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT  375 (614)
T ss_pred             ------------------------hhh--------hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence                                    000        111489999999999999999998874    33  6899999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccc
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~T  497 (620)
                      |++.+++...... ..++++|+|+||+++++++ +         +..|||+|+|++++.|||++|+.|.+.| .||||+|
T Consensus       376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            9987766544332 3458999999999999998 2         2469999999999999999999999999 6899999


Q ss_pred             cceEEE----ccCCcEEEeecccCeEEcCCceeec--cHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHH
Q 007047          498 GDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA  571 (620)
Q Consensus       498 GDl~~~----~~dG~l~~~GR~~d~i~~~~G~~v~--p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~  571 (620)
                      ||+|++    |+||+|+|+||+||+||+++|++|+  |.|+|.++.+||.|.+|+|+|.+ ++.++|+|+++++....++
T Consensus       445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~-~~~~~a~V~~~~~~~~~~~  523 (614)
T PRK08180        445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD-RDEIGLLVFPNLDACRRLA  523 (614)
T ss_pred             cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC-CCceEEEEEcCHHHHHHHH
Confidence            999999    4689999999999999877899777  77888999999999999999998 4578899999988887777


Q ss_pred             HHCCCCCCHHHHhccHHHHHHHHHHHHHHH--------HHCCCccCCccc
Q 007047          572 YSNGHAGSFLELCSLVQLQNYILSELKNAA--------ERNKVIFANWDT  613 (620)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~  613 (620)
                      ... ......+.+..+++++++...|.+++        ++.++.+++-.|
T Consensus       524 ~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p  572 (614)
T PRK08180        524 GLL-ADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPP  572 (614)
T ss_pred             hhc-ccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCC
Confidence            655 22334556677899999999999998        677777766544

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-64  Score=560.66  Aligned_cols=524  Identities=21%  Similarity=0.250  Sum_probs=406.6

Q ss_pred             CCCCCCCCCCceecCccC----CCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHH
Q 007047           14 GKDGKPSVGPVYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQI   89 (620)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~l   89 (620)
                      |-..+|....++|+..++    .+++.. ....++.++|.++++++||++|+++.   +...+.++.+||+||.++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~l   93 (624)
T PRK12582         18 PLNWKPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDAL   93 (624)
T ss_pred             ccccCCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHH
Confidence            456677888888887544    444443 34578999999999999999999875   4324557899999999999999


Q ss_pred             HHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCCh-----hHHHHHHhhcCccEEEEcchh-HHHhc
Q 007047           90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELL  163 (620)
Q Consensus        90 A~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~  163 (620)
                      |++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.     +++.+++++++++++|+++.. .....
T Consensus        94 A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  173 (624)
T PRK12582         94 AQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARAL  173 (624)
T ss_pred             HHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999885     899999999999999998642 12111


Q ss_pred             ccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCc--ccCCCCCCCCeEEEEecCCCCCCcceeeec
Q 007047          164 SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (620)
Q Consensus       164 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t  241 (620)
                      .....  ...+ ++.......         ......++++........  .......++++++++|||||||.||||++|
T Consensus       174 ~~~~~--~~~~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~t  241 (624)
T PRK12582        174 AALDL--LDVT-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINT  241 (624)
T ss_pred             Hhhhh--cCce-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEee
Confidence            21111  1222 333332110         011334555554321110  111234679999999999999999999999


Q ss_pred             cHHHHHHhhhhhhhcccccCCCC---CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--C---hHHHHHHHhhcC
Q 007047          242 HETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELK  312 (620)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~---~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~---~~~~~~~i~~~~  312 (620)
                      |++++..+......+     ...   ..+++++++|++|.+++.. ++.++..|+++++.+.  +   ...+++.+++++
T Consensus       242 h~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~  316 (624)
T PRK12582        242 QRMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS  316 (624)
T ss_pred             HHHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcC
Confidence            999998776554333     222   3589999999999999865 4567899999998753  2   345677888999


Q ss_pred             CcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeec
Q 007047          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (620)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG  392 (620)
                      +|+++++|+++..+.+.+....                                 .....++        +++|.+++||
T Consensus       317 ~t~~~~vP~~~~~l~~~~~~~~---------------------------------~~~~~~~--------~slr~i~~gG  355 (624)
T PRK12582        317 PTVYGNVPAGYAMLAEAMEKDD---------------------------------ALRRSFF--------KNLRLMAYGG  355 (624)
T ss_pred             CeEEeccCHHHHHHHHHHhhCH---------------------------------HHHHHHh--------hheeEEEecC
Confidence            9999999999998865432210                                 0111112        3899999999


Q ss_pred             CCCCHHHHHHHHHhc------CCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCc
Q 007047          393 APLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (620)
Q Consensus       393 ~~l~~~~~~~~~~~~------~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~G  466 (620)
                      +++++++.+++.+.+      +++++++||+||++.+++..... ....+++|.|+||+++++++          .|+.|
T Consensus       356 a~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G~~G  424 (624)
T PRK12582        356 ATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VGDKY  424 (624)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CCCce
Confidence            999999999998752      36899999999998766533222 23458999999999999975          45689


Q ss_pred             eEEEecCCcccccCCChhhhhccc-cCCcccccceEEE-c---cCCcEEEeecccCeEEcCCceeeccHHHH--HHHhcC
Q 007047          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVA  539 (620)
Q Consensus       467 ei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~-~---~dG~l~~~GR~~d~i~~~~G~~v~p~~iE--~~l~~~  539 (620)
                      ||+|+|++++.|||++|+.|.+.| .||||+|||+|++ |   +||+|+|+||+||+||+++|++|+|.+||  .++.+|
T Consensus       425 El~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~  504 (624)
T PRK12582        425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACS  504 (624)
T ss_pred             EEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcC
Confidence            999999999999999999999999 7899999999998 4   46999999999999998789999998885  678999


Q ss_pred             cCcceEEEEecCCCceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHH--------HHCCCccCCc
Q 007047          540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA--------ERNKVIFANW  611 (620)
Q Consensus       540 p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~  611 (620)
                      |.|.+|+|+|.+ +..+.++|+|+.+.+..++...+.  ...+.+..+++.+++...|.+++        ++.++.+.+-
T Consensus       505 p~V~~a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  581 (624)
T PRK12582        505 PVIHDAVVAGQD-RAFIGLLAWPNPAACRQLAGDPDA--APEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTE  581 (624)
T ss_pred             cchheEEEEcCC-CCcEEEEEecCHHHHHHHHhcCCC--CHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCC
Confidence            999999999986 678899999998887777655432  24556778899999999999998        7777776664


Q ss_pred             cc
Q 007047          612 DT  613 (620)
Q Consensus       612 ~~  613 (620)
                      .+
T Consensus       582 ~~  583 (624)
T PRK12582        582 PP  583 (624)
T ss_pred             CC
Confidence            44

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.2e-64  Score=564.80  Aligned_cols=506  Identities=17%  Similarity=0.177  Sum_probs=381.5

Q ss_pred             cccHHHHHHHHHH-hCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~a~-~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      .+...++|+++++ .+|+++|+++.   ....+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        87 ~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~l  163 (666)
T PLN02654         87 TNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAML  163 (666)
T ss_pred             eeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4455788887776 48999999875   3333445789999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHH---------hccccccc---ccCccEEEEecCCcHHHH
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPDCRS---AQRLRVMVCFTSLTAEQK  187 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~vi~~~~~~~~~~  187 (620)
                      ||+++|++++|+++.++.+++..++++++++++|+++.....         +.......   ......++..........
T Consensus       164 A~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
T PLN02654        164 ACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKR  243 (666)
T ss_pred             HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccc
Confidence            999999999999999999999999999999999998764321         10000000   011122222221110000


Q ss_pred             HHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHh-hhhhhhcccccCCCCCC
Q 007047          188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVD  266 (620)
Q Consensus       188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~  266 (620)
                      ............|+++..... .........++|+++|+|||||||.||||+++|.+++... ......+     +++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~  317 (666)
T PLN02654        244 EDTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPT  317 (666)
T ss_pred             cccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCC
Confidence            000000011233555543321 1122233578999999999999999999999999986543 3333334     78899


Q ss_pred             cEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchH
Q 007047          267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (620)
Q Consensus       267 d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (620)
                      |++++..|+.|.++... .+.+|+.|++++++++     ++..+++.++++++|+++++|++++.+.+...+.       
T Consensus       318 d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------  390 (666)
T PLN02654        318 DVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-------  390 (666)
T ss_pred             cEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc-------
Confidence            99999999999998764 5678999999999863     6899999999999999999999999886531100       


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCC
Q 007047          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGL  417 (620)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~  417 (620)
                                                  ....++        ++||.++++|+++++++.+++.+.+|   +++.+.||+
T Consensus       391 ----------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~  434 (666)
T PLN02654        391 ----------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ  434 (666)
T ss_pred             ----------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccc
Confidence                                        111122        28999999999999999999998887   689999999


Q ss_pred             CCCCCceeeccCCC-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---c
Q 007047          418 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I  491 (620)
Q Consensus       418 TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~  491 (620)
                      ||+++......+.. ...++++|.|+||++++|+| +++..  ++.++.|||+|++  |+++.|||++++.+.+.+   .
T Consensus       435 TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~--~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~  511 (666)
T PLN02654        435 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE--IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPF  511 (666)
T ss_pred             cccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC--CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcC
Confidence            99987665443322 34558999999999999999 66654  3455789999999  789999999999988776   3


Q ss_pred             CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHH
Q 007047          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (620)
Q Consensus       492 dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~  568 (620)
                      +|||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++++.-.
T Consensus       512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~  590 (666)
T PLN02654        512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPY  590 (666)
T ss_pred             CCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence            899999999999999999999999999997 7999999999999999999999999997764   488999998642100


Q ss_pred             HHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                              .   .++  ..+++++++.++..+..|+++.+++-.|++
T Consensus       591 --------~---~~l--~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T  624 (666)
T PLN02654        591 --------S---EEL--RKSLILTVRNQIGAFAAPDKIHWAPGLPKT  624 (666)
T ss_pred             --------C---HHH--HHHHHHHHHHhCCCCcCCCEEEECCCCCCC
Confidence                    0   000  114555555555555556666555555544

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-66  Score=494.97  Aligned_cols=460  Identities=20%  Similarity=0.225  Sum_probs=390.1

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      .+++.++|.++|+++||++|+++.   +      +.+||+||.++++++|..|++.|+++||+|.+.+||..+|++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            478999999999999999999864   2      4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH----HHhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      ++++|+.+|.--|.....+|.++.+...++.+|++....    ..+........+.++++++.++...            
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~------------  165 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEH------------  165 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCC------------
Confidence            999999999988998999999999999999999987431    2233333345578888888855431            


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      .......+........+..+..++++|+...+.||||.||-++.||.....++....+.+     +++..+++++.+|..
T Consensus       166 ~~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         166 PSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             cchhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence            111222222222233445567888999999999999999999999999999999988888     999999999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |.+.+..  .+..++.|+++|+.+. +++..+.+|+++++|+...+|.+...|++......                   
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~-------------------  301 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER-------------------  301 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc-------------------
Confidence            9988874  6778999999999876 99999999999999999999999999887544321                   


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-c
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-M  432 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~  432 (620)
                                        .++        +|||.+-+||+.+++.+.+++...+|+.+-+.|||.|.-. .+....+. .
T Consensus       302 ------------------~~L--------sSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLv-nyTRLDDp~E  354 (542)
T COG1021         302 ------------------ADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV-NYTRLDDPPE  354 (542)
T ss_pred             ------------------CCc--------hheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhh-cccccCCchH
Confidence                              223        3999999999999999999999999999999999999533 33332222 3


Q ss_pred             cccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEE
Q 007047          433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (620)
Q Consensus       433 ~~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~  510 (620)
                      ....+-|+|+ |.-+++|+| .+++  |+++|+.|+|.++||+.++|||+.|+.++.+| .||+|+|||++++|+||+|.
T Consensus       355 ~i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~  431 (542)
T COG1021         355 IIIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLV  431 (542)
T ss_pred             heeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEE
Confidence            3336778886 788999999 6664  67788999999999999999999999999999 99999999999999999999


Q ss_pred             EeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh-----HHHHHHHHHCCC
Q 007047          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE-----EDTKKWAYSNGH  576 (620)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~-----~~~~~~~~~~~~  576 (620)
                      +.||.||+|+ |+|+||..+|||+.|..||.|.+|++|+.+|+   +..+|+||+++     .+++.|+.+.+.
T Consensus       432 V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~Gl  504 (542)
T COG1021         432 VEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGL  504 (542)
T ss_pred             EEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcch
Confidence            9999999999 79999999999999999999999999999986   79999999764     466666666654

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=5.7e-64  Score=557.79  Aligned_cols=511  Identities=17%  Similarity=0.164  Sum_probs=386.8

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ...+...++|.++++.+|+++|+++.   +...+..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~  125 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM  125 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34566678898888899999999975   433344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH---------HHhcccccccccCccEEEEecCCcHHHHHH
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~  189 (620)
                      |||+++|++++|+++.++.+++.+++++++++++|+++...         ..+.............++.++......   
T Consensus       126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  202 (628)
T TIGR02316       126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM---  202 (628)
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence            99999999999999999999999999999999999976432         111111111112234555554321100   


Q ss_pred             HhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHh-hhhhhhcccccCCCCCCcE
Q 007047          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDV  268 (620)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~d~  268 (620)
                       ........+|+++.+.......+.....++++++|+|||||||.||||+++|.+++... ......+     ++.++|+
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  276 (628)
T TIGR02316       203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV  276 (628)
T ss_pred             -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence             00001124566665543221222223568999999999999999999999999986443 3333334     6788999


Q ss_pred             EEEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007047          269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (620)
Q Consensus       269 ~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (620)
                      +++..|++|..++. ..+.+|+.|++++++++     ++..+++.++++++|+++++|++++.+.+.....         
T Consensus       277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  347 (628)
T TIGR02316       277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW---------  347 (628)
T ss_pred             EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence            99999999998875 46778999999999863     6889999999999999999999998875421100         


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCC
Q 007047          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (620)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~  422 (620)
                                                ....++        ++||.+++||+++++++.+++++.++..+++.||+||++.
T Consensus       348 --------------------------~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~  393 (628)
T TIGR02316       348 --------------------------LRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW  393 (628)
T ss_pred             --------------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence                                      011112        3899999999999999999999988999999999999986


Q ss_pred             ceeeccCC---CccccCccccCccCeeEEEeecC-CCCCCCCCCCCCceEEEecC---CcccccCCChhhhhccc----c
Q 007047          423 PTTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----I  491 (620)
Q Consensus       423 ~~~~~~~~---~~~~~~~~G~~~~~~~i~i~~~~-~~~~~~~~~g~~Gei~v~g~---~v~~gy~~~~~~t~~~~----~  491 (620)
                      .++.....   .....+++|.|+||++++|+| + ++  .+++.|+.|||+++||   +.+.|||++++.+.+.+    .
T Consensus       394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g--~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~  470 (628)
T TIGR02316       394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATG--RPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFK  470 (628)
T ss_pred             eeecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCC--CCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCC
Confidence            44333221   123347899999999999999 5 34  3455678999999998   57899999998877654    5


Q ss_pred             CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHH
Q 007047          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (620)
Q Consensus       492 dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~  568 (620)
                      ++||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.||+|++.+++   +.++++|++++..-.
T Consensus       471 ~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~  549 (628)
T TIGR02316       471 RPLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA  549 (628)
T ss_pred             CCEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc
Confidence            779999999999999999999999999997 7999999999999999999999999997764   488899887532100


Q ss_pred             HHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccccc
Q 007047          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCF  616 (620)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  616 (620)
                            .......  ....++++++.++++++..|+++.+++..|++.
T Consensus       550 ------~~~~~~~--~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~  589 (628)
T TIGR02316       550 ------GDAHDPH--AVETGMMDCVVRQLGAVARPARVYFVAALPKTR  589 (628)
T ss_pred             ------ccccchH--HHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCC
Confidence                  0000000  011256666666677777777777766666553

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=4.3e-64  Score=559.53  Aligned_cols=466  Identities=18%  Similarity=0.236  Sum_probs=371.3

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ...+...++|+++++++|+++|+++.   +...+..+.+||+||.+++.++|+.|++.|+++||+|+++++|++++++++
T Consensus        54 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  130 (625)
T TIGR02188        54 GELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM  130 (625)
T ss_pred             CEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34467788888889999999999986   432455678999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH---------Hhccccccccc-CccEEEEecCCcHHHHH
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKE  188 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~-~~~~vi~~~~~~~~~~~  188 (620)
                      |||+++|++++|+++.++.+++.+++++++++++|+++....         .+..... ..+ .++.++++.......  
T Consensus       131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--  207 (625)
T TIGR02188       131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPV--  207 (625)
T ss_pred             HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCc--
Confidence            999999999999999999999999999999999999875321         1111111 112 345555554321100  


Q ss_pred             HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhh-hhhcccccCCCCCCc
Q 007047          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDD  267 (620)
Q Consensus       189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~-~~~~~~~~~~~~~~d  267 (620)
                        .........|++++.... .........++++++|+|||||||.||||+++|.+++...... ...+     ++.++|
T Consensus       208 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d  279 (625)
T TIGR02188       208 --PWVEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGD  279 (625)
T ss_pred             --CccccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCc
Confidence              000111234666654432 1222334678999999999999999999999999987654432 2233     678899


Q ss_pred             EEEEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHH
Q 007047          268 VYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (620)
Q Consensus       268 ~~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (620)
                      ++++..|++|..+.. ..+.++..|++++++++     ++..+++.++++++|+++++|++++.+.+.....        
T Consensus       280 ~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------  351 (625)
T TIGR02188       280 IFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW--------  351 (625)
T ss_pred             EEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------
Confidence            999999999998865 46678999999999853     6899999999999999999999999886532110        


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCC
Q 007047          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  418 (620)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~T  418 (620)
                                                 .+..++        +++|.+++||+++++++.+++.+.++   +++++.||+|
T Consensus       352 ---------------------------~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~T  396 (625)
T TIGR02188       352 ---------------------------VKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQT  396 (625)
T ss_pred             ---------------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccccc
Confidence                                       011112        38999999999999999999998875   7899999999


Q ss_pred             CCCCceeeccCC-CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---cC
Q 007047          419 ETCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID  492 (620)
Q Consensus       419 E~~~~~~~~~~~-~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~d  492 (620)
                      |+++.++..... ....++++|.|++|++++|+| +++...+ +.|+.|||+|+|  |+++.|||++++.+.+.+   .+
T Consensus       397 E~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~  474 (625)
T TIGR02188       397 ETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFP  474 (625)
T ss_pred             ccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCC
Confidence            998876554332 233458899999999999999 6665443 267899999999  689999999999887776   48


Q ss_pred             CcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       493 gw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |||+|||+|++|+||+++++||+||+||+ +|++|+|.+||++|.+||.|.||+|++.+++   +.++|+|++++
T Consensus       475 g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~  548 (625)
T TIGR02188       475 GYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKD  548 (625)
T ss_pred             CEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCC
Confidence            99999999999999999999999999997 7999999999999999999999999997654   58889999754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.1e-63  Score=555.05  Aligned_cols=480  Identities=22%  Similarity=0.266  Sum_probs=380.2

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...|+.++|.+.++++|+++|+++... .+.....+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus        23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            347899999999999999999987511 1112334789999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH-----HHhcccccccccCccEEEEecCCcHHHH--HHH--
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQK--EMA--  190 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~~~--  190 (620)
                      ||+++| +++|+++.++.+++.++++.++++++|++....     ..+.... ...+.++.++.++.......  ...  
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCccccccccccccc
Confidence            999999 569999999999999999999999999976432     2222211 12244556665543210000  000  


Q ss_pred             ---hhcCCceeeHHHHHhcCccCc-ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCC
Q 007047          191 ---VQTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD  266 (620)
Q Consensus       191 ---~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~  266 (620)
                         .....+..+|++.+....... .......++++++++|||||||.||+|++||.+++..+......+     .+.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~  254 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPG  254 (632)
T ss_pred             ccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCC
Confidence               001223456666655433221 122334789999999999999999999999999998877665555     67889


Q ss_pred             cEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC----C---hHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047          267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (620)
Q Consensus       267 d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (620)
                      |++++.+|++|.++... .+.++..|+++++.+.    +   ...+++.++++++|++.++|+++..+.+....      
T Consensus       255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------  328 (632)
T PRK07529        255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------  328 (632)
T ss_pred             CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------
Confidence            99999999999998874 6678999999999753    1   36888999999999999999999988642100      


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCC
Q 007047          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (620)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  418 (620)
                                                      ..++        +++|.+++||+++++++.+++++.+|+++++.||+|
T Consensus       329 --------------------------------~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~T  368 (632)
T PRK07529        329 --------------------------------GHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT  368 (632)
T ss_pred             --------------------------------CCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeeccc
Confidence                                            0011        389999999999999999999998999999999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCC--CCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcc
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~--~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~  495 (620)
                      |++.+++.+........+++|.|+|+++++++..++++.  .+++.|+.|||+|+|+.++.||+++++ +...| .+|||
T Consensus       369 E~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~  447 (632)
T PRK07529        369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWL  447 (632)
T ss_pred             ccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCce
Confidence            999877666544444558999999999999975333331  566778999999999999999998754 55555 78999


Q ss_pred             cccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHH
Q 007047          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EED  566 (620)
Q Consensus       496 ~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~  566 (620)
                      +|||+|++|+||++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.      +++
T Consensus       448 ~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~  526 (632)
T PRK07529        448 NTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAE  526 (632)
T ss_pred             EcCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHH
Confidence            99999999999999999999999996 8999999999999999999999999997764   4789999864      456


Q ss_pred             HHHHHHHCC
Q 007047          567 TKKWAYSNG  575 (620)
Q Consensus       567 ~~~~~~~~~  575 (620)
                      +.+|++++.
T Consensus       527 l~~~~~~~l  535 (632)
T PRK07529        527 LLAFARDHI  535 (632)
T ss_pred             HHHHHHHhc
Confidence            777776654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-63  Score=545.21  Aligned_cols=457  Identities=21%  Similarity=0.213  Sum_probs=363.3

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.+.|.+.++++|+++|+.+.   +.     +++||+||.++++++|+.|.+   .+||+|+|+++|++++++++|||
T Consensus        19 ~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~   87 (539)
T PRK06334         19 KTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFAT   87 (539)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHH
Confidence            78999999999999999998753   22     369999999999999999987   38999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+.............++.+++...            ...+.
T Consensus        88 ~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~~  155 (539)
T PRK06334         88 LLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK------------ELSFW  155 (539)
T ss_pred             HhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh------------hccHH
Confidence            999999999999999999999999999999999887665543321110001112333332110            00011


Q ss_pred             HHHhcC-----cc----CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 007047          202 EFLHLG-----KV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (620)
Q Consensus       202 ~l~~~~-----~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (620)
                      +.....     ..    .........++++++++|||||||.||||++||+++..........+     +++.+|+++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~  230 (539)
T PRK06334        156 EKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMSF  230 (539)
T ss_pred             HhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEEe
Confidence            100000     00    00112245689999999999999999999999999998877665555     67889999999


Q ss_pred             cChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007047          273 LPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (620)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (620)
                      +|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|+++..+++......               
T Consensus       231 ~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------  295 (539)
T PRK06334        231 LPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE---------------  295 (539)
T ss_pred             cchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc---------------
Confidence            99999999864 5678999999988753  89999999999999999999999999875322110               


Q ss_pred             HHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeecc
Q 007047          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCF  428 (620)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~  428 (620)
                                            .++        +++|.+++||+++++++.+++.+.+ ++.+++.||+||++.+++...
T Consensus       296 ----------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~  345 (539)
T PRK06334        296 ----------------------SCL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINT  345 (539)
T ss_pred             ----------------------ccc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEecc
Confidence                                  011        3899999999999999999999888 689999999999988776654


Q ss_pred             CCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc--cCCcccccceEEEccC
Q 007047          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILPN  506 (620)
Q Consensus       429 ~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~--~dgw~~TGDl~~~~~d  506 (620)
                      .......+++|.|++|++++|+| ++++ .+++.|+.|||+|+|+.++.|||++++.+....  .+|||+|||+|++|+|
T Consensus       346 ~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~  423 (539)
T PRK06334        346 VNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH  423 (539)
T ss_pred             CCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCC
Confidence            44333346899999999999998 4432 466778899999999999999999998755332  3679999999999999


Q ss_pred             CcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcce------EEEEecCCCc-eEEEEEEc--ChHHHHHHHHHC
Q 007047          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------IWVYGDSLKS-MLVAVVVP--CEEDTKKWAYSN  574 (620)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~------~~V~~~~~~~-~~~a~vv~--~~~~~~~~~~~~  574 (620)
                      |++++.||.||+||+ +|++|+|.|||++|.+||+|.+      ++|++.+++. .++++++.  +.+++.++++++
T Consensus       424 G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  499 (539)
T PRK06334        424 GELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNS  499 (539)
T ss_pred             CeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhc
Confidence            999999999999997 7999999999999999999998      7888887654 55556553  346677777765

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.5e-64  Score=551.74  Aligned_cols=455  Identities=22%  Similarity=0.208  Sum_probs=362.7

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..-++.++|.+.++++|+++|++..   +      +.+||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3478999999999999999999753   2      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++.++.+++.++++++++++++++...............+.+..++..++......    ........
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence            99999999999999999999999999999999999876432211111112223333444332210000    00001112


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      ++++...............++++++++|||||||.||||+++|.+++.........+     ++..+|++++.+|++|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~  226 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG  226 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence            222221110111111234678999999999999999999999999988766655444     778899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+.......                       
T Consensus       227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-----------------------  283 (563)
T PLN02860        227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT-----------------------  283 (563)
T ss_pred             cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc-----------------------
Confidence            98777788999999988875 899999999999999999999999988753211100                       


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC------
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE------  431 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~------  431 (620)
                                  ...+        +++|.+++||+++++++.+.+++.| +.++++.||+||++..++......      
T Consensus       284 ------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  343 (563)
T PLN02860        284 ------------WKVF--------PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESP  343 (563)
T ss_pred             ------------cccc--------cceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccc
Confidence                        0001        4899999999999999999999988 789999999999986554322111      


Q ss_pred             ----------------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCc
Q 007047          432 ----------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (620)
Q Consensus       432 ----------------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw  494 (620)
                                      .....++|.|+|+++++|++ ++       +|+.|||+|+|+.++.|||++|+.+.+.| .+||
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~  415 (563)
T PLN02860        344 KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGW  415 (563)
T ss_pred             hhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCe
Confidence                            11113689999999999998 43       45789999999999999999999999888 6899


Q ss_pred             ccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       495 ~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |+|||+|++|+||++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++++
T Consensus       416 ~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~  487 (563)
T PLN02860        416 LDTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRD  487 (563)
T ss_pred             EEccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECC
Confidence            999999999999999999999999997 8999999999999999999999999997764   58899998754

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.9e-64  Score=549.56  Aligned_cols=483  Identities=20%  Similarity=0.200  Sum_probs=391.4

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.++|.+.++++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   3      46999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+... ......+..++.......       ....+..+++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998776654332 112222333322221110       0112355677


Q ss_pred             HHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 007047          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (620)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (620)
                      ++......   ...+..+++.++++|||||||.||+|+++|++++..+......+     ++..++++++.+|++|.+++
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            77654322   12233467889999999999999999999999998877766555     67888999999999999998


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007047          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (620)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (620)
                      ...+.++..|+++++... ++..+++.++++++|++.++|+++..+.+......                          
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------  317 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL--------------------------  317 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------
Confidence            877778999999988765 89999999999999999999999998865322100                          


Q ss_pred             CCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCcccc
Q 007047          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (620)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  440 (620)
                               ...++        +++|.+++||+++++++.+++.+.++..+++.||+||++..+..........++++|.
T Consensus       318 ---------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  380 (549)
T PRK07788        318 ---------AKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR  380 (549)
T ss_pred             ---------CCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence                     00011        3899999999999999999999989999999999999987655444332334478999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEE
Q 007047          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (620)
Q Consensus       441 ~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~  520 (620)
                      |+++++++|+| +++.  +++.|+.|||+|+|++++.||++++..   ...+|||+|||+|++|+||++++.||+||+||
T Consensus       381 ~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~  454 (549)
T PRK07788        381 PPKGVTVKILD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV  454 (549)
T ss_pred             CCCCcEEEEEC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence            99999999999 6655  444578999999999999999998765   34589999999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHH
Q 007047          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (620)
Q Consensus       521 ~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  597 (620)
                      + +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.        .        ....++++++.+.+
T Consensus       455 ~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~--------~~~~~l~~~~~~~l  517 (549)
T PRK07788        455 S-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA--------A--------LDEDAIKDYVRDNL  517 (549)
T ss_pred             E-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC--------C--------CCHHHHHHHHHHhh
Confidence            6 8999999999999999999999999997764   4789999986531        0        01136777777778


Q ss_pred             HHHHHHCCCccCCccccc
Q 007047          598 KNAAERNKVIFANWDTGC  615 (620)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~  615 (620)
                      +.+..|.++.+++-.|++
T Consensus       518 ~~~~~P~~i~~v~~lP~t  535 (549)
T PRK07788        518 ARYKVPRDVVFLDELPRN  535 (549)
T ss_pred             hcCCCCcEEEEeCCCCCC
Confidence            888778877777665543

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.6e-63  Score=544.85  Aligned_cols=456  Identities=19%  Similarity=0.220  Sum_probs=375.8

Q ss_pred             CcccHHHHHHHHHH-hCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        40 ~~~ti~~~l~~~a~-~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ..+.+.+++.++++ .+|+++|+++.   +..  ..+.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            45666788888887 48999999876   432  3368999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      |||+++|++++|+++.++.+++.++++.++++++|++.........   ...+..+.++.+++...        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence            9999999999999999999999999999999999998876544321   12234455655543211        011234


Q ss_pred             eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      ++.+++..... ........++++++++|||||||.||||+++|++++..+......+     ++.++|++++..|++|.
T Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  258 (570)
T PRK04319        185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV  258 (570)
T ss_pred             CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence            56666544322 2223345678999999999999999999999999998877665555     77889999999999998


Q ss_pred             HHHH-HHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047          279 LDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (620)
Q Consensus       279 ~g~~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (620)
                      ++.. ..+.++..|+++++...  ++..+++.++++++|+++++|++++.+.+.....                      
T Consensus       259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  316 (570)
T PRK04319        259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL----------------------  316 (570)
T ss_pred             hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence            8865 46678999999998754  8999999999999999999999999886421100                      


Q ss_pred             HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcccc
Q 007047          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (620)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~  435 (620)
                                   ....++        +++|.+++||+++++++.+++++.+|.++++.||+||++..++.........+
T Consensus       317 -------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~  375 (570)
T PRK04319        317 -------------VKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP  375 (570)
T ss_pred             -------------cccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence                         000112        38999999999999999999999899999999999999876654433333345


Q ss_pred             CccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccccCCcccccceEEEccCCcEEEee
Q 007047          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       436 ~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                      +++|.|+|+++++|++ +++...  +.|+.|||+++|  +.++.||+++++.+.+.|.+|||+|||++++++||+++++|
T Consensus       376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G  452 (570)
T PRK04319        376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG  452 (570)
T ss_pred             CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence            8999999999999999 666544  567899999997  89999999999999999999999999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |+||+||+ +|++|+|.+||++|.+||.|.+++|++.+++   +.++|+|++.+
T Consensus       453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~  505 (570)
T PRK04319        453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRP  505 (570)
T ss_pred             cCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECC
Confidence            99999997 7999999999999999999999999997764   57888888654

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-62  Score=548.82  Aligned_cols=462  Identities=19%  Similarity=0.245  Sum_probs=367.6

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +...++|.++++++|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||
T Consensus        67 n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~  143 (637)
T PRK00174         67 NVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC  143 (637)
T ss_pred             EHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            44567888889999999999976   433334578999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH---------HhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (620)
                      +++|++++|+++.++.+++.+++++++++++|+++....         .+.... ...+.++.++.++......    ..
T Consensus       144 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~  218 (637)
T PRK00174        144 ARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV----DW  218 (637)
T ss_pred             HHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc----Cc
Confidence            999999999999999999999999999999999875421         111111 1123455565554321100    00


Q ss_pred             cCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhh-hhhcccccCCCCCCcEEEE
Q 007047          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLS  271 (620)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~-~~~~~~~~~~~~~~d~~~~  271 (620)
                      .......|+++.... ..........++|+++++|||||||.||||+++|.+++..+... ...+     ++..+|++++
T Consensus       219 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~  292 (637)
T PRK00174        219 VEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWC  292 (637)
T ss_pred             CCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEE
Confidence            011233466665432 12222334568899999999999999999999999987654432 2223     6778899999


Q ss_pred             ecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007047          272 FLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (620)
Q Consensus       272 ~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (620)
                      ..|++|..+.. ..+.+++.|+++++.++     ++..+++.++++++|++.++|++++.+.+.....            
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------  360 (637)
T PRK00174        293 TADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH------------  360 (637)
T ss_pred             cCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc------------
Confidence            99999998875 46678999999999753     6899999999999999999999999886531110            


Q ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCCCCCC
Q 007047          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG  422 (620)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~  422 (620)
                                             ....++        ++||.+++||+++++++.+++.+.++   +++++.||+||++.
T Consensus       361 -----------------------~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~  409 (637)
T PRK00174        361 -----------------------PKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGG  409 (637)
T ss_pred             -----------------------cccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCC
Confidence                                   000112        38999999999999999999988775   78999999999988


Q ss_pred             ceeeccCCC-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---cCCccc
Q 007047          423 PTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH  496 (620)
Q Consensus       423 ~~~~~~~~~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~dgw~~  496 (620)
                      .++...... ...++++|.|++|++++|+| +++..  ++.|+.|||+|+|  |+++.|||++++.+.+.+   .+|||+
T Consensus       410 ~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~--~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~  486 (637)
T PRK00174        410 IMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP--LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYF  486 (637)
T ss_pred             ceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC--CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEE
Confidence            765443321 23347899999999999999 66654  4456899999999  689999999999888776   489999


Q ss_pred             ccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       497 TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |||+|++|+||+++|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.+
T Consensus       487 TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~  556 (637)
T PRK00174        487 TGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKG  556 (637)
T ss_pred             CCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECC
Confidence            9999999999999999999999997 7999999999999999999999999997654   58899999753

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=8.4e-62  Score=533.04  Aligned_cols=451  Identities=24%  Similarity=0.287  Sum_probs=371.3

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.++|.++++.+|+++|+++.   +...+.++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            57999999999999999999876   433455678999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH-----HHhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      +++|++++|+++.++.+++.++++.++++++|+++...     ..+ .........+..++.++...             
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------  166 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMA-RRLRPELPALRHVVVVGGDG-------------  166 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHH-HHHhhhCCCcceEEEecCCC-------------
Confidence            99999999999999999999999999999999987531     111 11112223455566554321             


Q ss_pred             eeeHHHHHhcCcc-------CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEE
Q 007047          197 PYSWDEFLHLGKV-------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (620)
Q Consensus       197 ~~~~~~l~~~~~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (620)
                      ..++.+++.....       .........++++++++|||||||.||+|+++|.++...+......+     ++..++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~  241 (547)
T PRK13295        167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVI  241 (547)
T ss_pred             ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeE
Confidence            1233333321100       01112234678999999999999999999999999998887766655     77889999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007047          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (620)
Q Consensus       270 ~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (620)
                      ++.+|++|..++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+........             
T Consensus       242 l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------------  308 (547)
T PRK13295        242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG-------------  308 (547)
T ss_pred             EEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC-------------
Confidence            99999999998764 6678999999998876 89999999999999999999999988765321100             


Q ss_pred             HHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeec
Q 007047          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (620)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  427 (620)
                                              .++        +++|.+++||+++++++.+++.+.++.++++.||+||++.+++.+
T Consensus       309 ------------------------~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  356 (547)
T PRK13295        309 ------------------------RPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK  356 (547)
T ss_pred             ------------------------CCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeecc
Confidence                                    011        389999999999999999999998899999999999998876655


Q ss_pred             cCCC-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC
Q 007047          428 FPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (620)
Q Consensus       428 ~~~~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d  506 (620)
                      .... .....++|.|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++++.|... .+|||+|||+|++++|
T Consensus       357 ~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~  432 (547)
T PRK13295        357 LDDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDAD  432 (547)
T ss_pred             CCCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCC
Confidence            4322 22236889999999999999 6554  4556789999999999999999999988776 6899999999999999


Q ss_pred             CcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |++++.||.||+||+ +|++|+|.+||++|.+|+.|.+|+|++.++.   +.++++|++++
T Consensus       433 g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~  492 (547)
T PRK13295        433 GYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRP  492 (547)
T ss_pred             ceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCC
Confidence            999999999999996 8999999999999999999999999997654   47899998754

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-61  Score=538.72  Aligned_cols=509  Identities=17%  Similarity=0.175  Sum_probs=384.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      .+...++|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  128 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLA  128 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            455688898888899999999985   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH---------HHhcccccccccCccEEEEecCCcHHHHHHHh
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      |+++|++++|+++.++.+++.+++++++++++|+++...         ..+.............++.++......    .
T Consensus       129 ~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~  204 (629)
T PRK10524        129 CARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----A  204 (629)
T ss_pred             HHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence            999999999999999999999999999999999976421         111111111112234555554321100    0


Q ss_pred             hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCcEEE
Q 007047          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~~  270 (620)
                      ........|.++...............++++++++|||||||.||||+++|.+++..... ....+     ++.++|+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~  279 (629)
T PRK10524        205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFF  279 (629)
T ss_pred             cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            001112346665543322222222346789999999999999999999999987654433 22333     678899999


Q ss_pred             EecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007047          271 SFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (620)
Q Consensus       271 ~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (620)
                      +..|+.|..+.. ..+.+++.|+++++.++     ++..+++.++++++|+++++|++++.+.+....            
T Consensus       280 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  347 (629)
T PRK10524        280 CASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA------------  347 (629)
T ss_pred             EcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc------------
Confidence            999999988765 46678999999998763     688999999999999999999999887542100            


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCce
Q 007047          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (620)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  424 (620)
                                             .....++        +++|.+++||+++++++.+++.+.++.++++.||+||++..+
T Consensus       348 -----------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  396 (629)
T PRK10524        348 -----------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPI  396 (629)
T ss_pred             -----------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchh
Confidence                                   0011122        389999999999999999999998999999999999998533


Q ss_pred             eeccCC---CccccCccccCccCeeEEEeecC-CCCCCCCCCCCCceEEEecC---CcccccCCChhhhhccc----cCC
Q 007047          425 TVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDG  493 (620)
Q Consensus       425 ~~~~~~---~~~~~~~~G~~~~~~~i~i~~~~-~~~~~~~~~g~~Gei~v~g~---~v~~gy~~~~~~t~~~~----~dg  493 (620)
                      ......   .....+++|.|++|++++|+| + ++.  +++.|+.|||+++||   .++.|||++++.+.+.+    .+|
T Consensus       397 ~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~--~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (629)
T PRK10524        397 LAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGE--PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQ  473 (629)
T ss_pred             hcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCC--CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCc
Confidence            222211   123357899999999999999 5 554  456778999999998   57889999998877654    468


Q ss_pred             cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHH
Q 007047          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (620)
Q Consensus       494 w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~  570 (620)
                      ||+|||+|++|+||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|+++++.... 
T Consensus       474 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~-  551 (629)
T PRK10524        474 VYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLA-  551 (629)
T ss_pred             EEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccc-
Confidence            9999999999999999999999999997 6999999999999999999999999998765   4888999976431000 


Q ss_pred             HHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccccc
Q 007047          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCF  616 (620)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  616 (620)
                           ......+  ...++++++.+++..+..|.++.+++-.|++.
T Consensus       552 -----~~~~~~~--~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~  590 (629)
T PRK10524        552 -----DREARLA--LEKEIMALVDSQLGAVARPARVWFVSALPKTR  590 (629)
T ss_pred             -----cccchHH--HHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCC
Confidence                 0000000  01256666666677777777777766666543

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=8.8e-61  Score=525.96  Aligned_cols=463  Identities=24%  Similarity=0.283  Sum_probs=362.8

Q ss_pred             HHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHHHHHHHh
Q 007047           45 WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNA  123 (620)
Q Consensus        45 ~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~  123 (620)
                      ..+|.+  +.+|+++|+++.   ++.    .++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus        44 ~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~  114 (560)
T PLN02574         44 SFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLS  114 (560)
T ss_pred             HHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHH
Confidence            344443  679999999864   221    369999999999999999998 9999999999999999999999999999


Q ss_pred             CCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHH
Q 007047          124 LSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (620)
Q Consensus       124 ~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l  203 (620)
                      +|++++|++|..+.+++.++++.++++++|++.+....+...      ... ++.+......     .........|.++
T Consensus       115 ~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-----~~~~~~~~~~~~~  182 (560)
T PLN02574        115 LGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPENYDF-----DSKRIEFPKFYEL  182 (560)
T ss_pred             hCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCccccc-----ccCccCcccHHHH
Confidence            999999999999999999999999999999998766554321      111 2222111000     0001122345555


Q ss_pred             HhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 007047          204 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (620)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  283 (620)
                      +..... ........++++++++|||||||.||||++||+++...+..+..............++++..+|++|.+++..
T Consensus       183 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~  261 (560)
T PLN02574        183 IKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL  261 (560)
T ss_pred             hhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence            543321 1122334678999999999999999999999999998776554321111112245788999999999999875


Q ss_pred             -HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccC
Q 007047          284 -EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (620)
Q Consensus       284 -~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (620)
                       ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+.....                            
T Consensus       262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------  313 (560)
T PLN02574        262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----------------------------  313 (560)
T ss_pred             HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----------------------------
Confidence             4556788999988876 8999999999999999999999999886532100                            


Q ss_pred             CCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccC-CCccccCccc
Q 007047          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG  439 (620)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~~~G  439 (620)
                              ...++        +++|.+++||+++++++.+++.+.+ +..+++.||+||++.+++.... ......+++|
T Consensus       314 --------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG  377 (560)
T PLN02574        314 --------CGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVG  377 (560)
T ss_pred             --------ccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCcee
Confidence                    00011        3899999999999999999998887 6899999999999876543222 2223457899


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCe
Q 007047          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (620)
Q Consensus       440 ~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~  518 (620)
                      .++|+++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||+||+
T Consensus       378 ~~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~  455 (560)
T PLN02574        378 LLAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEI  455 (560)
T ss_pred             eeCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhh
Confidence            999999999999 4333 456677899999999999999999999999888 6899999999999999999999999999


Q ss_pred             EEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHHHHHHHHHCCC
Q 007047          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EEDTKKWAYSNGH  576 (620)
Q Consensus       519 i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~~~~~~~~~~~  576 (620)
                      ||+ +|++|+|.+||++|.+||+|.|++|++.++.   +.++++|+++      .+++.++++++..
T Consensus       456 i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~  521 (560)
T PLN02574        456 IKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVA  521 (560)
T ss_pred             eEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhcc
Confidence            997 7999999999999999999999999997654   4788888864      3556666665543

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-61  Score=527.23  Aligned_cols=460  Identities=20%  Similarity=0.193  Sum_probs=358.8

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc
Q 007047           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (620)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~  111 (620)
                      .-+..++....++.+.|.++|+++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++||+|+++++|+
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~   76 (540)
T PRK05857          4 KKFQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNG   76 (540)
T ss_pred             ccccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCC
Confidence            345566777789999999999999999999864   432    5699999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHh
Q 007047          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       112 ~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      +++++++|||+++|++++|+++.++.+++.++++.++++.+|+++...... ..+........ ++..+.....      
T Consensus        77 ~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~------  148 (540)
T PRK05857         77 PETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT------  148 (540)
T ss_pred             HHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc------
Confidence            999999999999999999999999999999999999999999988653211 11111111222 2222211100      


Q ss_pred             hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEE
Q 007047          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~  271 (620)
                        .   . +.+.....  .........++++++++|||||||.||||++||+++.++........ ........+++.++
T Consensus       149 --~---~-~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  219 (540)
T PRK05857        149 --R---E-SEHSLDAA--SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYS  219 (540)
T ss_pred             --c---c-cccccccc--ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeee
Confidence              0   0 00000000  01112234678999999999999999999999999987654322110 00114556789999


Q ss_pred             ecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       272 ~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      .+|++|..++...+.+++.|+++++.+.++..+++.++++++|+++++|++++.+.+.....                  
T Consensus       220 ~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~------------------  281 (540)
T PRK05857        220 PLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA------------------  281 (540)
T ss_pred             cCCccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC------------------
Confidence            99999999887777789999998776568899999999999999999999999886532110                  


Q ss_pred             HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC
Q 007047          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (620)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (620)
                                         ..++        +++|.+++||++++....+++. .+++++++.||+||++..........
T Consensus       282 -------------------~~~~--------~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~~~~~~~~~~~  333 (540)
T PRK05857        282 -------------------NATV--------PSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDD  333 (540)
T ss_pred             -------------------CCcC--------ccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCCceeeeccccc
Confidence                               0111        3899999999999988876554 57999999999999986544333221


Q ss_pred             ----ccccCccccCccCeeEEEeecCCCCCCC----CCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEE
Q 007047          432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSP----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (620)
Q Consensus       432 ----~~~~~~~G~~~~~~~i~i~~~~~~~~~~----~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~  503 (620)
                          ....+++|+|++|++++|++ +++....    .+.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++
T Consensus       334 ~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~  412 (540)
T PRK05857        334 GSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLER  412 (540)
T ss_pred             ccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEE
Confidence                11347899999999999998 5544221    23467899999999999999999999999999999999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      |+||++++.||.||+||+ +|++|+|.+||++|..||+|.+|+|++.++.   +.+++++++.
T Consensus       413 d~~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~  474 (540)
T PRK05857        413 REDGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVAS  474 (540)
T ss_pred             cCCceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeC
Confidence            999999999999999997 7999999999999999999999999998764   3666666654

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-61  Score=527.91  Aligned_cols=458  Identities=26%  Similarity=0.328  Sum_probs=372.6

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCcHhHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      +..++.++|.+.++++|+++|+++.   +      +++||+||.+++.++|..|.+. |+++||+|+++++|++++++++
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~   78 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY   78 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence            3568999999999999999999875   3      4799999999999999999999 9999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHH-------H---
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK-------E---  188 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-------~---  188 (620)
                      |||+++|++++|+++..+.+++.++++.++++++|++......+.......  .++.++..........       .   
T Consensus        79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (546)
T PRK08314         79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR  156 (546)
T ss_pred             HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence            999999999999999999999999999999999999988766554322211  2333333221000000       0   


Q ss_pred             ----HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCC
Q 007047          189 ----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (620)
Q Consensus       189 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (620)
                          .......+...|++......  ........++++++++|||||||.||+|++||++++..+......+     .+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~  229 (546)
T PRK08314        157 AEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST  229 (546)
T ss_pred             cccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence                00000123345666554321  1223345788999999999999999999999999999888766665     678


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007047          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (620)
Q Consensus       265 ~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (620)
                      .+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+...++++++|++.++|+++..+++...           
T Consensus       230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~-----------  298 (546)
T PRK08314        230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG-----------  298 (546)
T ss_pred             CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC-----------
Confidence            8999999999999999864 5678999999999876 89999999999999999999999988764210           


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCC
Q 007047          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (620)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~  422 (620)
                                                ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++.
T Consensus       299 --------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  344 (546)
T PRK08314        299 --------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMA  344 (546)
T ss_pred             --------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEeccccccccc
Confidence                                      111112        2789999999999999999999988999999999999987


Q ss_pred             ceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc--C--Cccccc
Q 007047          423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTG  498 (620)
Q Consensus       423 ~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~--d--gw~~TG  498 (620)
                      .+........ ..+++|.|+++++++|+| +++. .+++.|+.|||+|+|+.++.||+++++.+.+.|.  +  +||+||
T Consensus       345 ~~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG  421 (546)
T PRK08314        345 QTHSNPPDRP-KLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG  421 (546)
T ss_pred             ceecCCCcCC-CCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence            7665443322 347899999999999999 4332 3445667999999999999999999999998873  3  499999


Q ss_pred             ceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       499 Dl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |+|+++++|++++.||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++.   +.++|+|++++
T Consensus       422 Dl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~  489 (546)
T PRK08314        422 DLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRP  489 (546)
T ss_pred             CEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECC
Confidence            99999999999999999999997 7999999999999999999999999997654   57899999754

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-61  Score=537.90  Aligned_cols=465  Identities=21%  Similarity=0.206  Sum_probs=359.0

Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH
Q 007047           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (620)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~  115 (620)
                      +.....-++.+.+.++  .+|+++|+++.   +. .+..+++||+||.++++++|+.|++.|+++||+|+++++|+++++
T Consensus        80 wf~~~~~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v  153 (655)
T PRK03584         80 WFPGARLNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETV  153 (655)
T ss_pred             eCCCCEeeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            3444444565555443  58999999986   43 455688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH---------HHhcccccccccCccEEEEecCCcHHH
Q 007047          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (620)
Q Consensus       116 ~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~  186 (620)
                      +++|||+++|++++|+++.++.+++.++++.++++++|+++...         ..+... ....+.+..++.++..... 
T Consensus       154 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-  231 (655)
T PRK03584        154 VAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAEL-RAALPSLEHVVVVPYLGPA-  231 (655)
T ss_pred             HHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHH-HhcCCCccEEEEEecCCCc-
Confidence            99999999999999999999999999999999999999987532         111111 1122344455555432100 


Q ss_pred             HHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHH-hhhhhhhcccccCCCCC
Q 007047          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (620)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (620)
                        ...........|++++..............++++++|+|||||||.||||++||.+++.. +......+     ++.+
T Consensus       232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  304 (655)
T PRK03584        232 --AAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGP  304 (655)
T ss_pred             --ccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCC
Confidence              000011234567776653222222233456799999999999999999999999987644 44333344     6788


Q ss_pred             CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchH
Q 007047          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (620)
Q Consensus       266 ~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (620)
                      +|++++..++.|.... ..+.+++.|+++++.++     ++..+++.++++++|++..+|+++..+.+....        
T Consensus       305 ~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------  375 (655)
T PRK03584        305 GDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV--------  375 (655)
T ss_pred             CCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC--------
Confidence            9999999999887543 34568999999999753     689999999999999999999999887531000        


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc--CCeeEeecCCC
Q 007047          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLT  418 (620)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~T  418 (620)
                                                + ....++        ++||.+++||+++++++.+++.+.+  ++.+.+.||+|
T Consensus       376 --------------------------~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~T  420 (655)
T PRK03584        376 --------------------------P-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGT  420 (655)
T ss_pred             --------------------------c-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChH
Confidence                                      0 011122        3899999999999999999999887  47899999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC--CcccccCCChhhhh--ccc---c
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---I  491 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~--~v~~gy~~~~~~t~--~~~---~  491 (620)
                      |++.......+......+++|.|++|++++|+| +++...   .|+.|||+|+|+  +++.|||++++.+.  ..+   .
T Consensus       421 E~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~  496 (655)
T PRK03584        421 DICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTF  496 (655)
T ss_pred             hhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccC
Confidence            986544433222233458899999999999999 666543   568999999996  78999999997653  222   3


Q ss_pred             CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       492 dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      +|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++   +.++|+|++++
T Consensus       497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~  571 (655)
T PRK03584        497 PGVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAE  571 (655)
T ss_pred             CCEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECC
Confidence            689999999999999999999999999996 7999999999999999999999999997763   58899999754

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.7e-61  Score=524.76  Aligned_cols=477  Identities=19%  Similarity=0.178  Sum_probs=381.6

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.++|.++++++||++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999854   3      36999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++.++.+++.+++++++++++|++......+..... ..+....++...+..            ....++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDED------------HDLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCc------------ccccHH
Confidence            9999999999999999999999999999999998876554432221 112222333332211            012344


Q ss_pred             HHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 007047          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (620)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (620)
                      ++......   ......+++.++++|||||||.||||+++|.++..........+     .+..+++++...|++|.+++
T Consensus       181 ~~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            44332211   11123468899999999999999999999998888777665554     66788999999999999998


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007047          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (620)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (620)
                      ...+.++..|+++++... ++..+++.++++++|++.++|+++..+.+.....                           
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------  305 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV---------------------------  305 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence            777888899999888765 8999999999999999999999999886421110                           


Q ss_pred             CCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCcccc
Q 007047          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (620)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  440 (620)
                              .+..++        .++|.+++||+++++++.+.|.+.++..+++.||+||++.+++.+.......++++|.
T Consensus       306 --------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        306 --------RNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             --------cccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                    000111        3899999999999999999999989989999999999998766554332334579999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEE
Q 007047          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (620)
Q Consensus       441 ~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~  520 (620)
                      |+++++++|+| +++.  +++.|+.|||+++|+.++.||+  ++.+. .+.+|||+|||++++++||++++.||+||+||
T Consensus       370 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik  443 (537)
T PRK13382        370 PAEGTEIRILD-QDFR--EVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV  443 (537)
T ss_pred             cCcCcEEEEEC-CCCC--CCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence            99999999999 6654  4456689999999999999998  44444 45689999999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHH
Q 007047          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (620)
Q Consensus       521 ~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  597 (620)
                      + +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++|+|+++++.-                ....++++++...+
T Consensus       444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~----------------~~~~~l~~~l~~~l  506 (537)
T PRK13382        444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS----------------ATPETLKQHVRDNL  506 (537)
T ss_pred             E-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC----------------CCHHHHHHHHHHhc
Confidence            6 8999999999999999999999999998754   46889998764320                00125667777777


Q ss_pred             HHHHHHCCCccCCcccc
Q 007047          598 KNAAERNKVIFANWDTG  614 (620)
Q Consensus       598 ~~~~~~~~~~~~~~~~~  614 (620)
                      +++..|.++.+++-+|.
T Consensus       507 ~~~~~P~~i~~v~~lP~  523 (537)
T PRK13382        507 ANYKVPRDIVVLDELPR  523 (537)
T ss_pred             cCCCCCcEEEEeccCCC
Confidence            77777777766655553

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=9.8e-61  Score=525.61  Aligned_cols=449  Identities=20%  Similarity=0.210  Sum_probs=355.9

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCC----CCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~----~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      ..++.++|.+.++++||++|+++.   ++..    ..++++||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            367889999999999999999875   3311    123479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcch--hHHHhcccccccccCccEEEEecCCcHHHHHHHhhcC
Q 007047          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (620)
                      ++|||+++|++++|+++.++.+++.+++++++++++|++++  ....+....   ......++.++...          .
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~  148 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L  148 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence            99999999999999999999999999999999999999752  222221111   01222333332210          0


Q ss_pred             CceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecC
Q 007047          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (620)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (620)
                      ....+++++...............++++++++|||||||.||+|++||.++...+......+     ++.++|+.++.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p  223 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP  223 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence            01224455442221122222345678999999999999999999999999999888776666     7888999999999


Q ss_pred             hhHHHHHHHHHHHhhcCcEEEEec--------CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       275 l~h~~g~~~~~~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      ++|.+++       ..|+++++..        .++..+++.++++++|+++++|+++..+.+......            
T Consensus       224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  284 (552)
T PRK09274        224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------  284 (552)
T ss_pred             HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------------
Confidence            9886543       4577777653        268999999999999999999999999876432110            


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc--CCeeEeecCCCCCCCce
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT  424 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~  424 (620)
                                               .++        +++|.+++||+++++++.+++++.+  |+++++.||+||++.++
T Consensus       285 -------------------------~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        285 -------------------------IKL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS  331 (552)
T ss_pred             -------------------------CCC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence                                     011        3899999999999999999999988  46999999999998766


Q ss_pred             eeccCC---------CccccCccccCccCeeEEEeecCCC-------CCCCCCCCCCceEEEecCCcccccCCChhhhhc
Q 007047          425 TVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (620)
Q Consensus       425 ~~~~~~---------~~~~~~~~G~~~~~~~i~i~~~~~~-------~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~  488 (620)
                      +.....         ......++|+|+|+++++|+| +++       +..+++.|+.|||+|+|+.++.|||++++.|..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~  410 (552)
T PRK09274        332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL  410 (552)
T ss_pred             eecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhh
Confidence            543321         011123789999999999998 432       234567788999999999999999999999988


Q ss_pred             cc---cCC--cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC--ceEEEEEE
Q 007047          489 SI---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVV  561 (620)
Q Consensus       489 ~~---~dg--w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~vv  561 (620)
                      .|   .+|  ||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++  +.++++|+
T Consensus       411 ~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~  489 (552)
T PRK09274        411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVE  489 (552)
T ss_pred             hhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEE
Confidence            76   356  9999999999999999999999999997 7999999999999999999999999987654  46888888


Q ss_pred             cCh
Q 007047          562 PCE  564 (620)
Q Consensus       562 ~~~  564 (620)
                      +.+
T Consensus       490 ~~~  492 (552)
T PRK09274        490 LEP  492 (552)
T ss_pred             ccC
Confidence            653

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=6.1e-61  Score=534.13  Aligned_cols=503  Identities=18%  Similarity=0.165  Sum_probs=368.7

Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH
Q 007047           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (620)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~  115 (620)
                      +.+....++.+.+..   ++++++|+++.   +. .+..+.+||+||.+++.++|+.|++.|+++||+|+++++|+++++
T Consensus        81 wf~~~~~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~  153 (652)
T TIGR01217        81 WFPGARLNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAV  153 (652)
T ss_pred             ECCCCeeeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            333444455555544   35789999886   43 345578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH---------HHhcccccccccCccEEEEecCCcHHH
Q 007047          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (620)
Q Consensus       116 ~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~  186 (620)
                      +++|||+++|++++|+++.++.+++.+++++++++++|+++...         ..+.... ...+.++.++.+.......
T Consensus       154 ~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~  232 (652)
T TIGR01217       154 VAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRE  232 (652)
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcc
Confidence            99999999999999999999999999999999999999987532         2222111 2223445566554221000


Q ss_pred             HHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHH-hhhhhhhcccccCCCCC
Q 007047          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (620)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (620)
                      ..  .........|+++...............++++++|+|||||||.||||+++|.+++.. .......+     ++.+
T Consensus       233 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  305 (652)
T TIGR01217       233 TE--APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGP  305 (652)
T ss_pred             cc--cccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCC
Confidence            00  0000123457776654211112223456789999999999999999999999987643 33333333     6788


Q ss_pred             CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchH
Q 007047          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (620)
Q Consensus       266 ~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (620)
                      +|++++..|+.|.... ..+.+++.|++++++++     ++..+++.++++++|++..+|+++..+.+.-.         
T Consensus       306 ~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------  375 (652)
T TIGR01217       306 GDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV---------  375 (652)
T ss_pred             CcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC---------
Confidence            9999999999997532 34468999999999863     57899999999999999888777765532100         


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC--CeeEeecCCC
Q 007047          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLT  418 (620)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~--~~v~~~YG~T  418 (620)
                                               ++ ....+++        +||.+++||+++++++.+++.+.++  ..+.+.||+|
T Consensus       376 -------------------------~~-~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~T  421 (652)
T TIGR01217       376 -------------------------HP-ARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGT  421 (652)
T ss_pred             -------------------------Cc-cccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHH
Confidence                                     00 1112233        8999999999999999999988775  4677999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC--CcccccCCChhhhh--cc-c--c
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--I  491 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~--~v~~gy~~~~~~t~--~~-~--~  491 (620)
                      |++.......+......+++|.|.+|++++|+| +++...   .|+.|||+++||  +++.|||++++.+.  +. |  .
T Consensus       422 E~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~  497 (652)
T TIGR01217       422 DICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY  497 (652)
T ss_pred             HHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCC
Confidence            975443332222233447889999999999999 666644   368999999996  68999999998664  22 2  3


Q ss_pred             CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHH
Q 007047          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (620)
Q Consensus       492 dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~  568 (620)
                      +|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.||+|++.+++   +.++|+|+++++.-.
T Consensus       498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~  576 (652)
T TIGR01217       498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATL  576 (652)
T ss_pred             CCEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCC
Confidence            789999999999999999999999999996 8999999999999999999999999997764   589999997642100


Q ss_pred             HHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                              .   .++  ..++++++.+++.++..|+++.+++-.|++
T Consensus       577 --------~---~~~--~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T  610 (652)
T TIGR01217       577 --------D---DAL--LDRIKRTIRAGLSPRHVPDEIIEVPGIPHT  610 (652)
T ss_pred             --------C---HHH--HHHHHHHHHhhCCCCcCCCEEEECCCCCCC
Confidence                    0   000  014555555555555555555555555544

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.8e-60  Score=518.98  Aligned_cols=502  Identities=26%  Similarity=0.333  Sum_probs=390.5

Q ss_pred             CCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCC
Q 007047           21 VGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP  100 (620)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~  100 (620)
                      ++-+||+-.....    ..+..++.+++.++++++|+++|+++.   +.  +  +++||.||.++++++|++|.+.|+++
T Consensus         6 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~a~~~~---~~--~--~~~ty~el~~~~~~la~~L~~~g~~~   74 (537)
T PLN02246          6 EEFIFRSKLPDIY----IPNHLPLHDYCFERLSEFSDRPCLIDG---AT--G--RVYTYADVELLSRRVAAGLHKLGIRQ   74 (537)
T ss_pred             ceeEecCCCCCCC----CCCCCcHHHHHHHHHHhCCCCeEEEec---CC--C--ceeeHHHHHHHHHHHHHHHHHhCCCC
Confidence            4456666543321    144578999999999999999999854   21  1  57999999999999999999999999


Q ss_pred             CCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEec
Q 007047          101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT  180 (620)
Q Consensus       101 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~  180 (620)
                      ||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|++......+......  ... .++.++
T Consensus        75 gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~~~  151 (537)
T PLN02246         75 GDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVTID  151 (537)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEEeC
Confidence            99999999999999999999999999999999999999999999999999999988776554332211  112 344443


Q ss_pred             CCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccccc
Q 007047          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (620)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~  260 (620)
                      +...           ....+.++.... ..........++++++++|||||||.||+|+++|++++..+....... ...
T Consensus       152 ~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~~~  218 (537)
T PLN02246        152 DPPE-----------GCLHFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-NPN  218 (537)
T ss_pred             CCCC-----------CceeHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-ccc
Confidence            3211           123444444322 111223345689999999999999999999999999998776543211 011


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (620)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (620)
                      ..+..+|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....      
T Consensus       219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------  292 (537)
T PLN02246        219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV------  292 (537)
T ss_pred             cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc------
Confidence            26788999999999999999865 5567999999999886 899999999999999999999999887542110      


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCC
Q 007047          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL  417 (620)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  417 (620)
                                                     ...++        +++|.+++||+++++++.+++++.+ +..+++.||+
T Consensus       293 -------------------------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~  333 (537)
T PLN02246        293 -------------------------------EKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGM  333 (537)
T ss_pred             -------------------------------cccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccc
Confidence                                           00111        3899999999999999999999988 6789999999


Q ss_pred             CCCCCceeeccC----CCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cC
Q 007047          418 TETCGPTTVCFP----DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  492 (620)
Q Consensus       418 TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~d  492 (620)
                      ||++.+++.+..    .....++++|.|+++++++|++ ++++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+
T Consensus       334 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~  411 (537)
T PLN02246        334 TEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKD  411 (537)
T ss_pred             cccCcccccccccCCCCccccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhcccCC
Confidence            999876554321    1122347899999999999998 4332 455667899999999999999999999999888 68


Q ss_pred             CcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHH
Q 007047          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (620)
Q Consensus       493 gw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~  569 (620)
                      |||+|||+|++++||++++.||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++++|+++++.   
T Consensus       412 ~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---  487 (537)
T PLN02246        412 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS---  487 (537)
T ss_pred             CCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC---
Confidence            99999999999999999999999999997 7999999999999999999999999997654   4788888875321   


Q ss_pred             HHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccc
Q 007047          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDT  613 (620)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  613 (620)
                          .         ....++++++.+.+..+..|.++.+++-.|
T Consensus       488 ----~---------~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P  518 (537)
T PLN02246        488 ----E---------ITEDEIKQFVAKQVVFYKRIHKVFFVDSIP  518 (537)
T ss_pred             ----C---------CCHHHHHHHHHhhCcCccccceEEEeccCC
Confidence                0         001245555555555555555555554444

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2e-60  Score=515.02  Aligned_cols=461  Identities=25%  Similarity=0.325  Sum_probs=379.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ++++.+.|.++++++||++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999864   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++..+.+++..+++.++++.+++++..........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876554321100                              0113


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +++...............++++++++|||||||.||+|++||.++...+......+     ++..+|++++.+|++|..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            33332221111222344678999999999999999999999999988776655555     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007047          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (620)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+.....                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            8877788999999999886 8999999999999999999999999886432110                          


Q ss_pred             cCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC-CccccCcc
Q 007047          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA  438 (620)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~~  438 (620)
                                          ....++|.+++||+++++.+.+.+++. ++++++.||+||++..+...... ....++++
T Consensus       251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                                001389999999999999999988874 99999999999987654433322 33445899


Q ss_pred             ccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCe
Q 007047          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (620)
Q Consensus       439 G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~  518 (620)
                      |+|++++++++.+ ++   .+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||++++++||++++.||+||+
T Consensus       310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~  385 (483)
T PRK03640        310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL  385 (483)
T ss_pred             ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence            9999999999988 43   3566778999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHH
Q 007047          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (620)
Q Consensus       519 i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (620)
                      +|+ +|.+|+|.+||+.+.++|+|.+++|++.+++   ..++++++++...                  ...++++++.+
T Consensus       386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~  446 (483)
T PRK03640        386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------TEEELRHFCEE  446 (483)
T ss_pred             EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------CHHHHHHHHHH
Confidence            996 7999999999999999999999999987654   4677777754210                  01245555555


Q ss_pred             HHHHHHHHCCCccCCccccc
Q 007047          596 ELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       596 ~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .++.+..|.++.+++..|++
T Consensus       447 ~l~~~~~p~~i~~~~~iP~t  466 (483)
T PRK03640        447 KLAKYKVPKRFYFVEELPRN  466 (483)
T ss_pred             hccCCCCCcEEEEeCCCCCC
Confidence            66666666666666665543

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-60  Score=525.76  Aligned_cols=462  Identities=27%  Similarity=0.369  Sum_probs=371.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999875   3      3699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHH--HHH----------
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE--QKE----------  188 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~~~----------  188 (620)
                      |+++|++++|+++.++.+++.+++++++++++|+++.....+......  .....++..+.....  ...          
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765444322111  123333333211000  000          


Q ss_pred             -----HHhhcCCceeeHHHHHhcCccCc---ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccccc
Q 007047          189 -----MAVQTGIKPYSWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (620)
Q Consensus       189 -----~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~  260 (620)
                           ..........+|.++........   .......++++++++|||||||.||+|.+||.+++..+.....++..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                 00001123446666654422110   12233568899999999999999999999999998877654333200  


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (620)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (620)
                       -...++++++.+|++|.+|+.. ...++..|+++++.+. +++.+++.++++++|++.++|++++.+.+.....     
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-----  331 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER-----  331 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc-----
Confidence             1234789999999999999865 4557889999988876 8999999999999999999999999887532211     


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCC
Q 007047          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (620)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  418 (620)
                                                      ..++        +++|.+++||+++++++.+.+.+.++.++++.||+|
T Consensus       332 --------------------------------~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        332 --------------------------------GVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             --------------------------------CCCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                            0111        389999999999999999999988899999999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCccccc
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TG  498 (620)
                      |++++++.........++++|.|+|++.++|+| +++...+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  450 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG  450 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence            999877665544344457899999999999999 5553355667789999999999999999999999999989999999


Q ss_pred             ceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       499 Dl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      |+|+++++|++++.||+||+||+ +|++|+|.+||+++.+|+.|.+++|++.++.   +.++++|+++
T Consensus       451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~  517 (573)
T PRK05605        451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLE  517 (573)
T ss_pred             CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEEC
Confidence            99999999999999999999996 8999999999999999999999999986543   5888888864

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.3e-60  Score=522.56  Aligned_cols=454  Identities=22%  Similarity=0.287  Sum_probs=350.4

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .|+.++|.++++.+||++|+++.   +      .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999999864   3      37999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhccccccc-----ccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      +++|++++|+++.++.+++.++++.++++++|++++....+.......     .... .++.++......     .....
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~  158 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNL-PVIFIHEIDFPK-----RPSSE  158 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCc-eEEEeccccccc-----CCccc
Confidence            999999999999999999999999999999999887665443322110     0112 234443211100     00112


Q ss_pred             eeeHHHHHhcCccCccc----CCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 007047          197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (620)
                      ..+++++..........    .....++++++++|||||||.||+|+++|.++...........     .+...+++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            34566665433221111    1234578999999999999999999999999765443322222     45667889999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       273 ~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      +|++|..++...+.++..|+++++... ++..+++.++++++|++.++|+++..+.+......                 
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  296 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------  296 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------
Confidence            999999988776777888888888765 88899999999999999999999998865311000                 


Q ss_pred             HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC
Q 007047          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (620)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (620)
                                          ..+        .+++.+++||+++++.+.+++++ +|.++++.||+||+++.++.+....
T Consensus       297 --------------------~~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 --------------------SPR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             --------------------CCc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence                                000        25678899999999999999876 5999999999999986544321100


Q ss_pred             -------------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCccccc
Q 007047          432 -------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (620)
Q Consensus       432 -------------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TG  498 (620)
                                   ....+..+.++++  +++.+.+.+...+.+.++.|||+|+|+.++.|||++|+.+.+.|.+|||+||
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG  425 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG  425 (579)
T ss_pred             ccccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence                         0011233334443  4555523333344333468999999999999999999999999999999999


Q ss_pred             ceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       499 Dl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |+|++|+||++++.||+||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.   +.++|+|++++
T Consensus       426 Dlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~  493 (579)
T PLN03102        426 DVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEK  493 (579)
T ss_pred             ceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecC
Confidence            99999999999999999999996 8999999999999999999999999998764   58889998753

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8e-60  Score=518.88  Aligned_cols=461  Identities=22%  Similarity=0.296  Sum_probs=363.5

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      ..+.|+.++|.+.++++|+++|++..    +     +.+||+||.++++++|++|.+ .|+++||+|+++++|+++++++
T Consensus        21 ~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~   91 (562)
T PRK05677         21 DEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVA   91 (562)
T ss_pred             CccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence            34468999999999999999999853    2     479999999999999999997 5999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCc--HHHHHHH-----
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMA-----  190 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~--~~~~~~~-----  190 (620)
                      +|||+++|++++|+++.++.+++.+++++++++++|++......+.+... . ...+.++..+...  .......     
T Consensus        92 ~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
T PRK05677         92 VFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVV  169 (562)
T ss_pred             HHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccch
Confidence            99999999999999999999999999999999999998766543322211 1 1233333322100  0000000     


Q ss_pred             --------hhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCC
Q 007047          191 --------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (620)
Q Consensus       191 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~  262 (620)
                              .........+.+.+..............++++++++|||||||.||||+++|.++...+......+.   ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~  246 (562)
T PRK05677        170 KHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SN  246 (562)
T ss_pred             hhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cC
Confidence                    0000112345555544322222233456899999999999999999999999999887665444331   12


Q ss_pred             CC-CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047          263 MT-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (620)
Q Consensus       263 ~~-~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (620)
                      +. ..+.+++.+|++|.+++.. ++..+..|++.++.+.  ++..+++.++++++|.++++|+++..+.+...       
T Consensus       247 ~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------  319 (562)
T PRK05677        247 LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA-------  319 (562)
T ss_pred             CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc-------
Confidence            23 3478899999999999864 5556778888776653  78999999999999999999999988764210       


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCC
Q 007047          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (620)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  418 (620)
                                                    ....++        +++|.+++||+++++++.+.|.+.+++++++.||+|
T Consensus       320 ------------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~t  361 (562)
T PRK05677        320 ------------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMT  361 (562)
T ss_pred             ------------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCcc
Confidence                                          000111        289999999999999999999998899999999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccc
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~T  497 (620)
                      |++.++....... ..++++|.|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++++.|.+.| .+|||+|
T Consensus       362 E~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T  437 (562)
T PRK05677        362 ETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGN--ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKT  437 (562)
T ss_pred             ccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCC--CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccc
Confidence            9988776554432 2347899999999999999 6654  45667899999999999999999999999999 6899999


Q ss_pred             cceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       498 GDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      ||+|++++||++++.||++|+||+ +|++|+|.+||++|.+||+|.+++|++.+++   +.++++|++.
T Consensus       438 GDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~  505 (562)
T PRK05677        438 GDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVK  505 (562)
T ss_pred             cceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeC
Confidence            999999999999999999999997 6999999999999999999999999997754   4777787754

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=6e-60  Score=528.22  Aligned_cols=467  Identities=18%  Similarity=0.141  Sum_probs=352.6

Q ss_pred             CCCCCcccH-HHHHHHHHHhCCCCceeEeeeccCCC--CCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 007047           36 SVDSDLNTA-WDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (620)
Q Consensus        36 ~~~~~~~ti-~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~  112 (620)
                      +.+...-++ ..+|.++++++||++|+++.   ++.  ++.++++||+||.++++++|++|++.|+++||+|+++++|++
T Consensus       168 wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~  244 (728)
T PLN03052        168 WLPGAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNV  244 (728)
T ss_pred             ECCCCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH
Confidence            444443444 44666666779999999987   432  234678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHh-----cccccccccCccEEEEecCCcHHHH
Q 007047          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL-----LSPDCRSAQRLRVMVCFTSLTAEQK  187 (620)
Q Consensus       113 e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-----~~~~~~~~~~~~~vi~~~~~~~~~~  187 (620)
                      ++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....-     ...+.....  ..++++....... 
T Consensus       245 e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~-  321 (728)
T PLN03052        245 HAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV-  321 (728)
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc-
Confidence            99999999999999999999999999999999999999999987542100     000000001  1233332111000 


Q ss_pred             HHHhhcCCceeeHHHHHhcCccC----cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCC
Q 007047          188 EMAVQTGIKPYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (620)
Q Consensus       188 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (620)
                        .........+|++++......    ........++++++|+|||||||.||||+++|.+++..+......+     ++
T Consensus       322 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l  394 (728)
T PLN03052        322 --RVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DI  394 (728)
T ss_pred             --ccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CC
Confidence              000011234677776543211    1111223568999999999999999999999999877665444333     67


Q ss_pred             CCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHH
Q 007047          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (620)
Q Consensus       264 ~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (620)
                      .++|++++..|+.|.++....+.+|..|++++++++  ++..+++.++++++|++.++|++++.+.+..           
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-----------  463 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-----------  463 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-----------
Confidence            889999999999999998767788999999999976  5578999999999999999999998875421           


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEeecCCCCC
Q 007047          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTET  420 (620)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~  420 (620)
                                                ..+..+++        +||.+++||++++++...++.+.++ .++++.||+||+
T Consensus       464 --------------------------~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~  509 (728)
T PLN03052        464 --------------------------CMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTEL  509 (728)
T ss_pred             --------------------------CcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhh
Confidence                                      01122333        8999999999999999888887765 579999999999


Q ss_pred             CCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCC--cccccCCChhhhhcccc-----CC
Q 007047          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG  493 (620)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~--v~~gy~~~~~~t~~~~~-----dg  493 (620)
                      ++.+..........++++|.|++|++++|+| +++++.+.+..+.|||+++++.  ...+|+++. .+..-|.     +|
T Consensus       510 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g  587 (728)
T PLN03052        510 GGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNG  587 (728)
T ss_pred             CcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCC
Confidence            8754443332333458899999999999999 7776554432246999998653  234666654 2322231     23


Q ss_pred             --cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHh-cCcCcceEEEEecCCC----ceEEEEEEcC
Q 007047          494 --WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDIWVYGDSLK----SMLVAVVVPC  563 (620)
Q Consensus       494 --w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~-~~p~V~~~~V~~~~~~----~~~~a~vv~~  563 (620)
                        ||+|||++++|+||+++++||+||+||+ +|++|+|.|||++|. .||+|.||+|++.+++    +.++++|+++
T Consensus       588 ~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~  663 (728)
T PLN03052        588 KILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLK  663 (728)
T ss_pred             CEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEe
Confidence              8999999999999999999999999997 799999999999995 8999999999997653    5789999975

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-60  Score=519.98  Aligned_cols=490  Identities=23%  Similarity=0.276  Sum_probs=375.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHH
Q 007047           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      .+.-.++.++|.++++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++||+|+|+++|+++++++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~   84 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA   84 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence            355578999999999999999999875   332    4699999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCce
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (620)
                      +|||+++|++++|+++.++.+++.++++.++++++|++............   ......+.+......      ......
T Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~  155 (534)
T PRK05852         85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLS  155 (534)
T ss_pred             HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------cccccc
Confidence            99999999999999999999999999999999999997653321111000   011111111111000      000000


Q ss_pred             eeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 007047          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (620)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (620)
                      ..+.....  ...........+++.++++|||||||.||+|+++|+++...+......+     .+..+|++++.+|++|
T Consensus       156 ~~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~  228 (534)
T PRK05852        156 VHLDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYH  228 (534)
T ss_pred             cccccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcch
Confidence            00110000  0001111122357889999999999999999999999998888776665     7888999999999999


Q ss_pred             HHHHHH-HHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          278 ILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      .+++.. .+.+++.|+++++...   ++..+++.++++++|+++++|+++..+.+......                   
T Consensus       229 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  289 (534)
T PRK05852        229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP-------------------  289 (534)
T ss_pred             hHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------
Confidence            999875 5667889999888542   78899999999999999999999998875322110                   


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC--
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--  431 (620)
                                      ...        ..+++|.+.++|+++++++.+++.+.++.++++.||+||++..++......  
T Consensus       290 ----------------~~~--------~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  345 (534)
T PRK05852        290 ----------------SGR--------KPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIG  345 (534)
T ss_pred             ----------------ccc--------cCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccc
Confidence                            000        014899999999999999999999999999999999999987665433211  


Q ss_pred             --ccccCccccC--ccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCC
Q 007047          432 --MCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (620)
Q Consensus       432 --~~~~~~~G~~--~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG  507 (620)
                        .....+.|.+  .+|++++++| +++.  +++.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||
T Consensus       346 ~~~~~~~~~g~~g~~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG  422 (534)
T PRK05852        346 QTENPVVSTGLVGRSTGAQIRIVG-SDGL--PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAG  422 (534)
T ss_pred             cccCcccccccCCCCCCCeEEEEC-CCCC--CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCC
Confidence              1111233443  7999999999 6664  4456789999999999999999999999999999999999999999999


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  584 (620)
                      ++++.||++|+||. +|.+|+|.+||++|.+||+|.+|+|++.+++   +.++++|++++...                .
T Consensus       423 ~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~----------------~  485 (534)
T PRK05852        423 DLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP----------------P  485 (534)
T ss_pred             cEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC----------------C
Confidence            99999999999996 8999999999999999999999999998764   47888888743210                0


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCccCCccc
Q 007047          585 SLVQLQNYILSELKNAAERNKVIFANWDT  613 (620)
Q Consensus       585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  613 (620)
                      ...++.+++.++++.+..|.++.+++-+|
T Consensus       486 ~~~~i~~~~~~~l~~~~~P~~i~~v~~iP  514 (534)
T PRK05852        486 TAEELVQFCRERLAAFEIPASFQEASGLP  514 (534)
T ss_pred             CHHHHHHHHHHhcccccCCeEEEEhhhcC
Confidence            01245556666666666666666655555

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=5.2e-60  Score=517.49  Aligned_cols=463  Identities=21%  Similarity=0.249  Sum_probs=372.1

Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH
Q 007047           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (620)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~  115 (620)
                      ..|...+++.++|.++++.+||++|+++.   +      +.+||+||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            34456678999999999999999999864   3      46999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCC
Q 007047          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (620)
Q Consensus       116 ~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (620)
                      +++|||+++|++++|+++.++.+++..+++++++++++++.+....+...... ....+.++.++.....    .     
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~-----  155 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV----S-----  155 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc----c-----
Confidence            99999999999999999999999999999999999999998776655332221 1234455555432110    0     


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl  275 (620)
                      ....|..................++++++++|||||||.||+|+++|.++..........+     ++..++++++.+|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  230 (542)
T PRK06155        156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL  230 (542)
T ss_pred             cccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence            0001111100000111122334678999999999999999999999999988776655555     78889999999999


Q ss_pred             hHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       276 ~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      +|..++...+.++..|+++++.+. ++..++..++++++|++.++|+++..+.+......                    
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06155        231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------  290 (542)
T ss_pred             HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence            999998877888999999998876 89999999999999999999999988764221100                    


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (620)
                                       ..        .+++|.++.||  +++.+.+.+++.+++++++.||+||++.++.....  ...
T Consensus       291 -----------------~~--------~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~  341 (542)
T PRK06155        291 -----------------DR--------AHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQR  341 (542)
T ss_pred             -----------------cc--------cCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCC
Confidence                             00        13788877665  57888889988899999999999999887665432  233


Q ss_pred             cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC---CcccccCCChhhhhccccCCcccccceEEEccCCcEEE
Q 007047          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       435 ~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~---~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      .+++|.++++++++|+| +++.  +++.|+.|||+++|+   .++.||+++++.+.+.|.+|||+|||+|++++||++++
T Consensus       342 ~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i  418 (542)
T PRK06155        342 PGSMGRLAPGFEARVVD-EHDQ--ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF  418 (542)
T ss_pred             CCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence            47899999999999998 6654  445567999999998   69999999999999999999999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh------HHHHHHHHHCC
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE------EDTKKWAYSNG  575 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~------~~~~~~~~~~~  575 (620)
                      .||.+|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+.++++++.      .++.++++++.
T Consensus       419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l  490 (542)
T PRK06155        419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRL  490 (542)
T ss_pred             EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhC
Confidence            9999999996 8999999999999999999999999987753   47777787642      34555555443

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=6.1e-60  Score=515.39  Aligned_cols=492  Identities=22%  Similarity=0.264  Sum_probs=389.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      .+++.++|++.++++||++|+++.   + ..+.++.+||.||.++++++|..|.+.|+++||+|+++++|+.++++++||
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999876   4 344567899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++..+.+++.++++.++++.+|++.+....+.+.........+.++..+....        ......++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccCH
Confidence            9999999999999999999999999999999999988766554333222234455555443211        01123445


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +++............+..++++++++|||||||.||+|++||.++...........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            55443322211122344678999999999999999999999999986543322111     4678899999999999876


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ... .+.++..|+++++.+. ++..+++.++++++|++.++|++++.+........                        
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  284 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------  284 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence            654 5667899999999876 89999999999999999999999987753211000                        


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCcc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~  438 (620)
                                   ...        .+++.+.++ .+++++....+.+.++.++++.||+||++..+............++
T Consensus       285 -------------~~~--------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        285 -------------DRQ--------HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             -------------ccc--------ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                         000        256766665 4788888888888889999999999999876655544444455789


Q ss_pred             ccCccCeeEEEeecCCCCCCCCCCCCCceEEEec---CCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeec
Q 007047          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  514 (620)
Q Consensus       439 G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g---~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR  514 (620)
                      |.|+++++++|+| +++.  +++.|+.|||+++|   +.++.||+++++.+.+.| .+|||+|||+|++|+||+++++||
T Consensus       343 G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR  419 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR  419 (517)
T ss_pred             ccCCCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeec
Confidence            9999999999999 6554  44566899999998   689999999999999998 689999999999999999999999


Q ss_pred             ccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHH
Q 007047          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (620)
Q Consensus       515 ~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (620)
                      .||+||+ +|++|+|.+||+++.+||.|.+|+|++.++.   +.+.++|+++.+.-                ....++++
T Consensus       420 ~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~~  482 (517)
T PRK08008        420 RCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET----------------LSEEEFFA  482 (517)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC----------------CCHHHHHH
Confidence            9999996 7999999999999999999999999997754   47889999864210                00125666


Q ss_pred             HHHHHHHHHHHHCCCccCCccccc
Q 007047          592 YILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       592 ~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ++.+.++.+..|..+.+++=+|++
T Consensus       483 ~~~~~l~~~~~P~~~~~v~~iP~t  506 (517)
T PRK08008        483 FCEQNMAKFKVPSYLEIRKDLPRN  506 (517)
T ss_pred             HHHhhcccccCCcEEEEeccCCCC
Confidence            666677777777777776666544

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-60  Score=528.38  Aligned_cols=456  Identities=18%  Similarity=0.167  Sum_probs=351.2

Q ss_pred             ceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 007047           24 VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCR  103 (620)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~  103 (620)
                      -|+|+..++....++ ...++.++|.++++++|+++|+++........+.++.+||+||.++++++|++|.+. +++||+
T Consensus         4 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~   81 (631)
T PRK07769          4 AFHNPFDVNGKIRFP-PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDR   81 (631)
T ss_pred             ccCCccccccccccc-ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCE
Confidence            456666666665544 447899999999999999999987510001233457899999999999999999987 899999


Q ss_pred             EEEEcCCcHhHHHHHHHHHhCCCEEEec-CCCCC--hhHHHHHHhhcCccEEEEcchhHHHhcccccccc-cCccEEEEe
Q 007047          104 VGIYGANCPQWVEAMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCF  179 (620)
Q Consensus       104 V~i~~~n~~e~~~~~lA~~~~G~v~vpi-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~vi~~  179 (620)
                      |+++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|++.+....+........ .....++.+
T Consensus        82 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (631)
T PRK07769         82 VAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAV  161 (631)
T ss_pred             EEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEc
Confidence            9999999999999999999999999999 45554  5789999999999999998876544322111100 011223332


Q ss_pred             cCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccc
Q 007047          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (620)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~  259 (620)
                      +....                  ..    ..........++++++++|||||||.||||++||+++...+......+   
T Consensus       162 ~~~~~------------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---  216 (631)
T PRK07769        162 DAVPD------------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL---  216 (631)
T ss_pred             ccccc------------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc---
Confidence            21100                  00    000111234679999999999999999999999999998877766555   


Q ss_pred             cCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCC---cEEEechHHHHHHHHHHH
Q 007047          260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIK  331 (620)
Q Consensus       260 ~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~  331 (620)
                        ++..+|++++++|++|.+|+...+.+++.|+++++...     ++..+++.+.++++   +++..+|+++..+.....
T Consensus       217 --~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~  294 (631)
T PRK07769        217 --EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG  294 (631)
T ss_pred             --CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence              67889999999999999999877777788999888752     78889999998876   789999998876643100


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc---C
Q 007047          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---C  408 (620)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~  408 (620)
                           .+                           .......++        +++|.+++||+++++++.++|.+.|   |
T Consensus       295 -----~~---------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g  334 (631)
T PRK07769        295 -----LP---------------------------KDGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYG  334 (631)
T ss_pred             -----cc---------------------------hhcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcC
Confidence                 00                           000001122        3899999999999999999998877   3


Q ss_pred             ---CeeEeecCCCCCCCceeeccCCCc--------------------------cccCccccCccCeeEEEeecCCCCCCC
Q 007047          409 ---AFLVQGYGLTETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSP  459 (620)
Q Consensus       409 ---~~v~~~YG~TE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~i~i~~~~~~~~~~  459 (620)
                         ..+++.||+||++..++.......                          ....++|.|+++++++|+|.+++  .+
T Consensus       335 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g--~~  412 (631)
T PRK07769        335 LPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETA--SE  412 (631)
T ss_pred             CChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCC--cC
Confidence               359999999999876554332110                          01247899999999999983333  34


Q ss_pred             CCCCCCceEEEecCCcccccCCChhhhhcccc------------------CCcccccceEEEccCCcEEEeecccCeEEc
Q 007047          460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKI  521 (620)
Q Consensus       460 ~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~------------------dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~  521 (620)
                      ++.|+.|||+|+|++++.|||++++.|.+.|.                  +|||+|||+|+++ ||+|+|+||+||+||+
T Consensus       413 ~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~  491 (631)
T PRK07769        413 LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII  491 (631)
T ss_pred             CCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE
Confidence            55678999999999999999999999999884                  3899999999995 9999999999999997


Q ss_pred             CCceeeccHHHHHHHhc-CcCcce--EEEEecCC
Q 007047          522 SQGEYVALEYLENVYCV-APIIED--IWVYGDSL  552 (620)
Q Consensus       522 ~~G~~v~p~~iE~~l~~-~p~V~~--~~V~~~~~  552 (620)
                       +|++|+|.|||++|.+ ||.|.+  |+|++.++
T Consensus       492 -~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d  524 (631)
T PRK07769        492 -DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPA  524 (631)
T ss_pred             -CCeeeCHHHHHHHHHhccccccCCcEEEEEecc
Confidence             8999999999999986 899998  89998776

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=7e-60  Score=517.72  Aligned_cols=503  Identities=22%  Similarity=0.274  Sum_probs=390.0

Q ss_pred             CCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 007047           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (620)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (620)
                      .+..+||+.+....    .++..|+.++|.+.++++|+++|+.+.   .+  +  +.+||.||.+++.++|+.|.+.|++
T Consensus        10 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~~l~~~~~~la~~L~~~g~~   78 (546)
T PLN02330         10 DNEHIFRSRYPSVP----VPDKLTLPDFVLQDAELYADKVAFVEA---VT--G--KAVTYGEVVRDTRRFAKALRSLGLR   78 (546)
T ss_pred             ccceeeccCCCCCC----CCCCCcHHHHHhhhhhcCCCccEEEec---CC--C--CcccHHHHHHHHHHHHHHHHHhCCC
Confidence            44567777755542    234588999999999999999999753   21  1  4799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEe
Q 007047          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (620)
Q Consensus       100 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~  179 (620)
                      +||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++++|+++.....+...      ... ++.+
T Consensus        79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~~-~i~~  151 (546)
T PLN02330         79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GLP-VIVL  151 (546)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CCc-EEEe
Confidence            999999999999999999999999999999999999999999999999999999998876654321      112 3333


Q ss_pred             cCCcHHHHHHHhhcCCceeeHHHHHhcCccCc--ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcc
Q 007047          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (620)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~  257 (620)
                      +...          ......|++++.......  .......++++++++|||||||.||||+++|.++...+....... 
T Consensus       152 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-  220 (546)
T PLN02330        152 GEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV-  220 (546)
T ss_pred             cCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence            3211          012345666665432211  112334578999999999999999999999999987665321111 


Q ss_pred             cccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHH
Q 007047          258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (620)
Q Consensus       258 ~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (620)
                        .......++.+..+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...    
T Consensus       221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----  294 (546)
T PLN02330        221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI----  294 (546)
T ss_pred             --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----
Confidence              112234578999999999998864 5667899999988876 89999999999999999999999998764211    


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEee
Q 007047          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQG  414 (620)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~  414 (620)
                                                       ....++..      .++|.+++||+++++++.+++.+.| +.++++.
T Consensus       295 ---------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~  335 (546)
T PLN02330        295 ---------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA  335 (546)
T ss_pred             ---------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence                                             00011110      1579999999999999999999988 8999999


Q ss_pred             cCCCCCCCceeeccCCC----ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc
Q 007047          415 YGLTETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (620)
Q Consensus       415 YG~TE~~~~~~~~~~~~----~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~  490 (620)
                      ||+||++.+...+....    .....++|.|+|+++++++| ++++ .+++.|+.|||+|+|+.++.||+++++.+.+.+
T Consensus       336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  413 (546)
T PLN02330        336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTI  413 (546)
T ss_pred             ccccccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhc
Confidence            99999986554332111    12336899999999999999 4333 455667899999999999999999999998888


Q ss_pred             -cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHH
Q 007047          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED  566 (620)
Q Consensus       491 -~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~  566 (620)
                       .+|||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.+||.|.+++|++.+++   +.++|+|++.+..
T Consensus       414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~  492 (546)
T PLN02330        414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA  492 (546)
T ss_pred             cCCCceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC
Confidence             6899999999999999999999999999997 7999999999999999999999999997653   4788888875321


Q ss_pred             HHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          567 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      -      .          ...++++++...++.+..|+.+.+++..|++
T Consensus       493 ~------~----------~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t  525 (546)
T PLN02330        493 K------E----------SEEDILNFVAANVAHYKKVRVVQFVDSIPKS  525 (546)
T ss_pred             C------C----------CHHHHHHHHHHhcccccCceEEEEeccCCCC
Confidence            0      0          0124555566666666666666666665543

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=5.3e-60  Score=516.64  Aligned_cols=481  Identities=19%  Similarity=0.194  Sum_probs=379.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++|+++|+++.    +     +.+||+||..+++++|..|.+.|+++||+|+++++|++++++++||
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            457999999999999999999754    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      |+++|++++++++..+.+++.++++.+++++++++.....    ..........+....++.......            
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  160 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------  160 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence            9999999999999999999999999999999999865321    111111111223344444332110            


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      .......+.... .........++++++++|||||||.||+|++||.++...+......+     .++.+|++++.+|++
T Consensus       161 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       161 EAELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             cchhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence            001111111111 11122345789999999999999999999999999998887766555     678899999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|++.++|.++..+.+......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9998764  5667899999988765 89999999999999999999999988765322110                   


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                        .++        +++|.+++||+++++++.+++.+.+|.++++.||+||++............
T Consensus       296 ------------------~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  349 (527)
T TIGR02275       296 ------------------YDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI  349 (527)
T ss_pred             ------------------CCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence                              011        389999999999999999999998899999999999976443322222222


Q ss_pred             ccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEE
Q 007047          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       434 ~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      ..+++|.|+ ++..++++| +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .||||+|||+|++++||++++
T Consensus       350 ~~~~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~  426 (527)
T TIGR02275       350 IFTTQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV  426 (527)
T ss_pred             ccccCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence            336889998 488999998 6554  44567899999999999999999999999888 789999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHH
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (620)
                      .||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++...                 ..+
T Consensus       427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~-----------------~~~  488 (527)
T TIGR02275       427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALK-----------------AAQ  488 (527)
T ss_pred             Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCC-----------------HHH
Confidence            9999999996 8999999999999999999999999998765   478899887543200                 125


Q ss_pred             HHHHHHHH-HHHHHHHCCCccCCcccc
Q 007047          589 LQNYILSE-LKNAAERNKVIFANWDTG  614 (620)
Q Consensus       589 ~~~~~~~~-i~~~~~~~~~~~~~~~~~  614 (620)
                      +++++... ++.+..|.++.+++-+|.
T Consensus       489 l~~~l~~~~l~~~~~P~~i~~v~~iP~  515 (527)
T TIGR02275       489 LRRFLRERGLAEYKLPDRVEFIDSLPL  515 (527)
T ss_pred             HHHHHHhCCCccccCCCEEEEeccCCC
Confidence            55666553 666666777766665553

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.7e-60  Score=521.03  Aligned_cols=464  Identities=22%  Similarity=0.301  Sum_probs=371.9

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      +...|+.++|+.++..+|+++|+++.   +.   +++.+||+||.++++++|.+|.+ .|+++||+|+++++|+++++++
T Consensus         7 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~   80 (576)
T PRK05620          7 DVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEV   80 (576)
T ss_pred             cCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHH
Confidence            34468999999999999999999864   22   24789999999999999999986 7999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCce
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (620)
                      ++||+++|++++|+++..+.+++.++++.++++++|++......+..... .....+.++..+....+............
T Consensus        81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  159 (576)
T PRK05620         81 LFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGIKV  159 (576)
T ss_pred             HHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccccccc
Confidence            99999999999999999999999999999999999999877665533322 23445556655432211111111122345


Q ss_pred             eeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhh--hhcccccCCCCCCcEEEEecCh
Q 007047          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFLPL  275 (620)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~--~~~~~~~~~~~~~d~~~~~~pl  275 (620)
                      .+|+++...... ........++++++++|||||||.||||+++|+++........  ..+     .+..++++++.+|+
T Consensus       160 ~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  233 (576)
T PRK05620        160 YSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPI  233 (576)
T ss_pred             ccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCCh
Confidence            568887764322 2222345678999999999999999999999999876544322  222     67889999999999


Q ss_pred             hHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          276 AHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       276 ~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      +|.+++...+.++..|+++++...  ++..+++.++++++|+++++|+++..++.......                   
T Consensus       234 ~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  294 (576)
T PRK05620        234 YHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-------------------  294 (576)
T ss_pred             HHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-------------------
Confidence            999998877888999999988753  89999999999999999999999988764321100                   


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC--
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--  431 (620)
                                        .+.        .++|.+++||+++++.+.+.|++.+|+++++.||+||++..++......  
T Consensus       295 ------------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  348 (576)
T PRK05620        295 ------------------PER--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGV  348 (576)
T ss_pred             ------------------ccc--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcc
Confidence                              000        2799999999999999999999888999999999999988766543321  


Q ss_pred             -----ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhh----------------hccc
Q 007047          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI  490 (620)
Q Consensus       432 -----~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t----------------~~~~  490 (620)
                           .....++|++.+++++++++ + +...+..++..|||+++|+.++.|||++++.+                ...|
T Consensus       349 ~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~  426 (576)
T PRK05620        349 SGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRF  426 (576)
T ss_pred             ccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccc
Confidence                 11224789999999999998 4 54444445678999999999999999999887                2334


Q ss_pred             -cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       491 -~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                       .+|||+|||++++++||++++.||.+|+||. +|++|+|.+||++|.+||.|.+|+|++.++.   +.++|++++.
T Consensus       427 ~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~  502 (576)
T PRK05620        427 TADGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLA  502 (576)
T ss_pred             ccCCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEec
Confidence             5789999999999999999999999999995 7999999999999999999999999997764   3677777754

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-60  Score=513.89  Aligned_cols=436  Identities=23%  Similarity=0.285  Sum_probs=361.9

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..+.+.|.++|+.+||++|+++.    +     +.+||+||.++++++|+.|.+ .|+++||+|+++++|++++++++||
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46889999999999999999853    2     579999999999999999985 6999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+..... . .....++.+.                  ++
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~------------------~~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISIT------------------SL  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEec------------------ch
Confidence            99999999999999999999999999999999998876554322111 1 1122233322                  12


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +++....   ........++++++++|||||||.||+|.++|.++..........+     ++..+|++++.+|++|..+
T Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  204 (496)
T PRK06839        133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG  204 (496)
T ss_pred             HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence            2222211   1122244678999999999999999999999999987665544444     6788999999999999998


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      +.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.+.+.....                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  259 (496)
T PRK06839        205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------  259 (496)
T ss_pred             HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence            865 4567999999988766 8999999999999999999999999886532110                         


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC-CccccCc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT  437 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~  437 (620)
                                  ..++        +++|.+++||+++++++.+.+++. |.++.+.||+||++..+...... .....++
T Consensus       260 ------------~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  318 (496)
T PRK06839        260 ------------TTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS  318 (496)
T ss_pred             ------------cCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence                        0111        389999999999999999999886 89999999999998765444322 2344589


Q ss_pred             cccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccC
Q 007047          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN  517 (620)
Q Consensus       438 ~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d  517 (620)
                      +|.|+++++++|++ +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||++++++||++++.||.+|
T Consensus       319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d  395 (496)
T PRK06839        319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE  395 (496)
T ss_pred             CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence            99999999999999 66654  5567899999999999999999999999888999999999999999999999999999


Q ss_pred             eEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       518 ~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      +|+. +|++|+|.+||++|.++|+|.+|+|++.++.   +.++|+|++++
T Consensus       396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~  444 (496)
T PRK06839        396 MIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKS  444 (496)
T ss_pred             eEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECC
Confidence            9996 8999999999999999999999999997754   47889999764

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.5e-60  Score=509.85  Aligned_cols=459  Identities=19%  Similarity=0.205  Sum_probs=371.3

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +++.+.|.++++++||++|+++.   +      .++||.||.++++++|.+|.+.|. +||+|+|+++|++++++++|||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            46889999999999999999864   3      479999999999999999999884 8999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++.++.+++.++++.++++++|++......+...      . ..++..+.                  +.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence            99999999999999999999999999999999988654433210      0 11222211                  11


Q ss_pred             HHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 007047          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (620)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (620)
                      +....... .........+++++++|||||||.||+|+++|.+++..+......+     ++..+|+++...|++|..++
T Consensus       126 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l  199 (487)
T PRK07638        126 RMIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL  199 (487)
T ss_pred             hhhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence            11111101 1111122456789999999999999999999999998887766555     77889999999999998887


Q ss_pred             HHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007047          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (620)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (620)
                      ...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+...     .                       
T Consensus       200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~-----------------------  251 (487)
T PRK07638        200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR-----V-----------------------  251 (487)
T ss_pred             HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----c-----------------------
Confidence            777788999999998876 89999999999999999999999998865200     0                       


Q ss_pred             CCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCccccCccc
Q 007047          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (620)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G  439 (620)
                                           ..+.+.++++|++++.++.+++.+.+ +..+++.||+||++.++............++|
T Consensus       252 ---------------------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        252 ---------------------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             ---------------------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence                                 02455677889999999999999988 68999999999999877665543344457899


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeE
Q 007047          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (620)
Q Consensus       440 ~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i  519 (620)
                      .|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++|+||++++.||++|+|
T Consensus       311 ~~~~~~~~~i~d-~~g~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        311 RPFHNVQVRICN-EAGE--EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             cccCCcEEEEEC-CCCC--CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            999999999999 6654  4556789999999999999999999988888889999999999999999999999999999


Q ss_pred             EcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHH
Q 007047          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (620)
Q Consensus       520 ~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (620)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|+...                    ...++++++.+.
T Consensus       388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~--------------------~~~~l~~~~~~~  446 (487)
T PRK07638        388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA--------------------TKQQLKSFCLQR  446 (487)
T ss_pred             Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC--------------------CHHHHHHHHHHH
Confidence            97 7999999999999999999999999998764   46777776421                    011444555555


Q ss_pred             HHHHHHHCCCccCCcccc
Q 007047          597 LKNAAERNKVIFANWDTG  614 (620)
Q Consensus       597 i~~~~~~~~~~~~~~~~~  614 (620)
                      ++.+..|.++.+++.+|+
T Consensus       447 l~~~~~p~~i~~v~~iP~  464 (487)
T PRK07638        447 LSSFKIPKEWHFVDEIPY  464 (487)
T ss_pred             hhcccCCcEEEEecccCC
Confidence            555555655555555553

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-59  Score=513.54  Aligned_cols=489  Identities=24%  Similarity=0.343  Sum_probs=398.6

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      .++.++.++|.+.++.+|+++|+++.   +      +++||+||++++.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45688999999999999999999874   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      +||+++|++++|+++..+.+++..+++.++++++++++.......... ......+.++.........      ......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------Cccccc
Confidence            999999999999999999999999999999999999887655443222 2233445555544322110      011234


Q ss_pred             eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      +|+++...... ........++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            67777654322 1233345789999999999999999999999999998887776666     78899999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +++.. .+.++..|+++++... ++..+++.++++++|++.++|+++..+.+.....                       
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  276 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS-----------------------  276 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC-----------------------
Confidence            99865 6678999999988765 8999999999999999999999999987532110                       


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCC-eeEeecCCCCCCCceeeccCCCccc-
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM-  434 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~-  434 (620)
                                    ...+        +++|.+++||+++++++.+.+++.++. .+++.||+||++++++.+....... 
T Consensus       277 --------------~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  334 (513)
T PRK07656        277 --------------AEDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT  334 (513)
T ss_pred             --------------CCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence                          0011        389999999999999999999998988 8999999999988887766544322 


Q ss_pred             -cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-CCcccccceEEEccCCcEEEe
Q 007047          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII  512 (620)
Q Consensus       435 -~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-dgw~~TGDl~~~~~dG~l~~~  512 (620)
                       ++++|.|+++++++|+| +++.  +++.|+.|||+++|+.++.||+++++.+...+. +|||+|||+|++++||.++++
T Consensus       335 ~~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~  411 (513)
T PRK07656        335 VAGTIGTAIAGVENKIVN-ELGE--EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV  411 (513)
T ss_pred             cCCCccccCCCcEEEEEC-CCCC--CCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence             58899999999999999 6554  455668999999999999999999999988885 999999999999999999999


Q ss_pred             ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHH
Q 007047          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (620)
Q Consensus       513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (620)
                      ||.||+|++ +|.+++|.+||+.|.++|+|.+++|++.++.   +.++|+|++++..        ..        ...++
T Consensus       412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~--------~~~~l  474 (513)
T PRK07656        412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------EL--------TEEEL  474 (513)
T ss_pred             ecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CC--------CHHHH
Confidence            999999997 7999999999999999999999999987654   4778888875310        00        01245


Q ss_pred             HHHHHHHHHHHHHHCCCccCCcccc
Q 007047          590 QNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       590 ~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                      ++++...++++..|..+..++=+|+
T Consensus       475 ~~~~~~~l~~~~~p~~i~~v~~iP~  499 (513)
T PRK07656        475 IAYCREHLAKYKVPRSIEFLDELPK  499 (513)
T ss_pred             HHHHHhhcccccCCCEEEEecCCCC
Confidence            5666666777667776666665554

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-60  Score=535.53  Aligned_cols=423  Identities=22%  Similarity=0.223  Sum_probs=347.8

Q ss_pred             ccHHHHHHHHHHh--CCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        42 ~ti~~~l~~~a~~--~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      .++.++|.++++.  +||++|++..          ..+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4788999988886  7999999742          259999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|++|.++.+++.+++++++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654432110         000                     0


Q ss_pred             HHHHHhcCc-cCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhh-hhcccccCCCCCCcEEEEecChhH
Q 007047          200 WDEFLHLGK-VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (620)
Q Consensus       200 ~~~l~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~-~~~~~~~~~~~~~d~~~~~~pl~h  277 (620)
                      ..++..... ..+.......++++++++|||||||.||||+++|.++...+..+. ..+     .+...|++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            011111000 011111234678999999999999999999999999988776543 233     6788999999999999


Q ss_pred             HHHHH-HHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          278 ILDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       278 ~~g~~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      .+++. ..+.++..|+++++.+.  ++..+...++++++|+++++|+++..+.+....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            88875 45678999999999864  788889999999999999999999887642110                      


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCcc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                       .++        +++|.+++||+++++++.+.+.+.+ +.++++.||+||++.++..+.... .
T Consensus       257 -----------------~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~  310 (705)
T PRK06060        257 -----------------DSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W  310 (705)
T ss_pred             -----------------ccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence                             001        3899999999999999999999888 589999999999986654443222 2


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEee
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                      ..+++|+|+++++++|+| +++.  +++.|+.|||+|+|+.++.|||++|+.+..  .+|||+|||+|++++||+++++|
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G  385 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC  385 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence            347899999999999999 6554  455678999999999999999999986532  47999999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      |+||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.   +.++|+|++.
T Consensus       386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~  437 (705)
T PRK06060        386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVAT  437 (705)
T ss_pred             ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEec
Confidence            99999997 7999999999999999999999999987654   4888999874

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.5e-59  Score=512.59  Aligned_cols=452  Identities=23%  Similarity=0.269  Sum_probs=366.4

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.++|.++++.+|+++|+++.   +...+.++.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            58999999999999999999864   322334568999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCCce
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (620)
                      +++|++++|+++.++.+++.++++.++++++|+++....    ...............++..+...             .
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence            999999999999999999999999999999999875421    01111111223344555554321             1


Q ss_pred             eeHHHHHhcCccC--c-----ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEE
Q 007047          198 YSWDEFLHLGKVN--E-----MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (620)
Q Consensus       198 ~~~~~l~~~~~~~--~-----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~  270 (620)
                      ..+++++......  .     .......++++++++|||||||.||+|+++|.++...+......+     ++..+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            1233333211100  0     011235679999999999999999999999999999888776655     678899999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007047          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (620)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (620)
                      +.+|++|..++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.........             
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~-------------  307 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGA-------------  307 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCC-------------
Confidence            9999999988764 6678999999988776 899999999999999999999999887643211100             


Q ss_pred             HHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeecc
Q 007047          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (620)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  428 (620)
                                              ++        +++|.+++||+++++++.+++.+.+++++++.||+||++.+.+...
T Consensus       308 ------------------------~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       308 ------------------------PV--------PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             ------------------------CC--------CcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                    01        3899999999999999999998888999999999999988766554


Q ss_pred             CCC-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCC
Q 007047          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (620)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG  507 (620)
                      ... .....++|.|+|+++++|++ +++.  +++.|+.|||+|+|+.++.||+++++.+.. ..+|||+|||+|++++||
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g  431 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEG  431 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCC--CCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCC
Confidence            322 12235789999999999998 6554  445678999999999999999999987753 368999999999999999


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      +++++||+||+|++ +|++|+|.+||++|.+||.|.+++|++.+++   +.++|+|++..
T Consensus       432 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  490 (538)
T TIGR03208       432 YIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKP  490 (538)
T ss_pred             cEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECC
Confidence            99999999999996 8999999999999999999999999997654   47888988753

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=4.1e-60  Score=571.88  Aligned_cols=510  Identities=18%  Similarity=0.149  Sum_probs=386.5

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCC---CCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~---~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      ..++.++|.++++++||++|+++.   +..   ....+++||+||.++++++|++|.+.|+++||+|+|+++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            368999999999999999999864   211   12346899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH---HHhccccccc---ccCccEEEEecCCcHHHHHHHh
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRS---AQRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      +|||+++|++++|++|.++.+++.++++.++++++|++....   ..+.......   ...+..+........       
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  384 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSL-------  384 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccc-------
Confidence            999999999999999999999999999999999999876421   1110000000   001111111110000       


Q ss_pred             hcCCceeeHHHHHhcCcc--CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEE
Q 007047          192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (620)
                      ..........+++.....  .........++|+++++|||||||.||||+++|+++.+.+......+     ++..+|++
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       385 VGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             cccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            000000000011100000  00111234689999999999999999999999999999887766666     78899999


Q ss_pred             EEecChhHHHHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007047          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (620)
Q Consensus       270 ~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (620)
                      ++..|++|..++...+.+++.|+++++.+.    ++..+.+.++++++|+++++|++++.+.....   .          
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~----------  526 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---T----------  526 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---c----------
Confidence            999999999888778889999999999764    57899999999999999999999987753110   0          


Q ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCce
Q 007047          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT  424 (620)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~  424 (620)
                                                 .+        +++|.+++||+++++...+.+.+.+ ++++++.||+||++..+
T Consensus       527 ---------------------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       527 ---------------------------PI--------PSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             ---------------------------cC--------CCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                       01        3899999999999999998887765 78999999999998876


Q ss_pred             eeccCCC----------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc---
Q 007047          425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---  491 (620)
Q Consensus       425 ~~~~~~~----------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~---  491 (620)
                      +......          .....++|.|+++++++|+| +++...+++.|+.|||+|+|++++.||+++|+.|.+.|.   
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~  650 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW  650 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence            6543211          01225789999999999999 666667777889999999999999999999999998882   


Q ss_pred             --------------------------CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceE
Q 007047          492 --------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (620)
Q Consensus       492 --------------------------dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~  545 (620)
                                                ++||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a  729 (1389)
T TIGR03443       651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVREN  729 (1389)
T ss_pred             ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchhee
Confidence                                      579999999999999999999999999997 79999999999999999999999


Q ss_pred             EEEecCCC---ceEEEEEEcChH--HHHHHHHHCC---CCCC----HHHH-hccHHHHHHHHHHHHHHHHHCCCccCCcc
Q 007047          546 WVYGDSLK---SMLVAVVVPCEE--DTKKWAYSNG---HAGS----FLEL-CSLVQLQNYILSELKNAAERNKVIFANWD  612 (620)
Q Consensus       546 ~V~~~~~~---~~~~a~vv~~~~--~~~~~~~~~~---~~~~----~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  612 (620)
                      +|++..++   +.++|+|++..+  ++..+.....   ....    .... ....++++++.++++.++.|..+.+++-.
T Consensus       730 ~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~l  809 (1389)
T TIGR03443       730 VTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKL  809 (1389)
T ss_pred             EEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccC
Confidence            98875433   589999998621  1111100000   0000    0000 01236788888889999999888887777


Q ss_pred             ccc
Q 007047          613 TGC  615 (620)
Q Consensus       613 ~~~  615 (620)
                      |.+
T Consensus       810 P~t  812 (1389)
T TIGR03443       810 PLN  812 (1389)
T ss_pred             CCC
Confidence            755

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-59  Score=511.16  Aligned_cols=455  Identities=22%  Similarity=0.312  Sum_probs=365.0

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.++|+++++.+|++.++.+.     ..++++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~   84 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV   84 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999998887653     1233567999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++.++.+++.++++.+++++++++.+....+.+.. .....++.++...+....     ........+++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  158 (539)
T PRK07008         85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALA-PQCPNVKGWVAMTDAAHL-----PAGSTPLLCYE  158 (539)
T ss_pred             HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHH-hhCCCceEEEEEccCCcc-----ccCCcccccHH
Confidence            999999999999999999999999999999999987765443322 222344455544332110     00112355677


Q ss_pred             HHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh--hhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~--~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      ++...... ........++++++++|||||||.||+|++||.+++.....  ....+     ++..+|++++.+|++|..
T Consensus       159 ~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~  232 (539)
T PRK07008        159 TLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVN  232 (539)
T ss_pred             HHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhh
Confidence            76544322 11223456789999999999999999999999998754322  22233     677899999999999988


Q ss_pred             HHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007047          280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (620)
                      ++...+.++..|+++++.+.  ++..+++.++++++|++.++|+++..+++.....                        
T Consensus       233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------  288 (539)
T PRK07008        233 AWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------  288 (539)
T ss_pred             hHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------
Confidence            77666777899999998754  8899999999999999999999999887532211                        


Q ss_pred             hccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC------
Q 007047          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------  431 (620)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------  431 (620)
                                   ..++        +++|.++++|+++++++.+++.+.++.++++.||+||++..++.+....      
T Consensus       289 -------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  347 (539)
T PRK07008        289 -------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLP  347 (539)
T ss_pred             -------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCC
Confidence                         0111        3899999999999999999998888999999999999987655432110      


Q ss_pred             ----ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCC
Q 007047          432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (620)
Q Consensus       432 ----~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG  507 (620)
                          .....++|.|+|+++++|+| +++...+.+.++.|||+++|+.++.||+++++   ..+.+|||+|||++++++||
T Consensus       348 ~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg  423 (539)
T PRK07008        348 LDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADG  423 (539)
T ss_pred             chhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCC
Confidence                11236789999999999999 67666665555689999999999999999983   34568999999999999999


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      ++++.||+||+||. +|++|+|.+||+++.+||.|.+++|++.++.   +.++++|+..
T Consensus       424 ~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~  481 (539)
T PRK07008        424 FMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR  481 (539)
T ss_pred             cEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeC
Confidence            99999999999996 8999999999999999999999999997764   4677777754

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-59  Score=509.04  Aligned_cols=489  Identities=28%  Similarity=0.376  Sum_probs=399.7

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.++++.+|+++|+.+.   +.      .+||+||+++++++|+.|.+.|+++|++|+++++|+.++++++|
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999875   43      59999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++.++.+++..+++.+++++++++.+....+.+.. ...+..+.++..++....      .......+
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAA------PLAPEVGE  147 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccc------cccccccc
Confidence            99999999999999999999999999999999999988766553332 233445566665543210      11223456


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      +.+++...... .......++++++++|||||||.||+|.+||.++..........+     ++..+|++++.+|++|.+
T Consensus       148 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        148 YEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             HHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            66666543222 223345678999999999999999999999999998888766655     788999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                         
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------------------------  276 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------------------------  276 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------
Confidence            98876669999999999876 8999999999999999999999999887533210                         


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCc-----c
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----C  433 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~-----~  433 (620)
                                  ..++        +++|.+++||++++.++.+++.+.+++++++.||+||++.++........     .
T Consensus       277 ------------~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        277 ------------FVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             ------------ccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                        0111        38899999999999999999999889999999999999887666544332     2


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEee
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                      ..+++|.|++++.++|+| +++...+.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+++++++|++++.|
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G  415 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD  415 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence            457899999999999999 7776555544889999999999999999999999999999999999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHH
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (620)
                      |.+|+||+ +|.+++|.+||+.|.++++|.+++|++.+++   +.+++++++.+..-                ....+++
T Consensus       416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~  478 (521)
T PRK06187        416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT----------------LDAKELR  478 (521)
T ss_pred             cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC----------------CCHHHHH
Confidence            99999997 7999999999999999999999999987653   47888888643210                0011445


Q ss_pred             HHHHHHHHHHHHHCCCccCCccc
Q 007047          591 NYILSELKNAAERNKVIFANWDT  613 (620)
Q Consensus       591 ~~~~~~i~~~~~~~~~~~~~~~~  613 (620)
                      +++.+.++.+..|.++.+++-.|
T Consensus       479 ~~l~~~l~~~~~p~~i~~v~~~P  501 (521)
T PRK06187        479 AFLRGRLAKFKLPKRIAFVDELP  501 (521)
T ss_pred             HHHHHhccCCCCceEEEEccCCC
Confidence            55555555555555555554444

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.3e-59  Score=511.22  Aligned_cols=497  Identities=22%  Similarity=0.306  Sum_probs=379.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      .+++.++|.++++++|+++|+++.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            368999999999999999999753    2     4799999999999999999985 99999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEec--CCcHHH-----------
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQ-----------  186 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~--~~~~~~-----------  186 (620)
                      ||+++|++++|+++.++.+++.++++.++++++++++............  .....++...  +.....           
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999987554333221111  0111111110  000000           


Q ss_pred             -HH-HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccccc----
Q 007047          187 -KE-MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE----  260 (620)
Q Consensus       187 -~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~----  260 (620)
                       .. ..........+|+++...............++++++++|||||||.||+|+++|+++...+......+....    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence             00 000001123456666554322222233456789999999999999999999999999877765544331100    


Q ss_pred             CCCCC-CcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHh
Q 007047          261 DKMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (620)
Q Consensus       261 ~~~~~-~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  336 (620)
                      ..... .+++++.+|++|.+++.. ++..+..|++.++...  ++..++..++++++|++.++|+++..+.+...     
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----  326 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG-----  326 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence            00222 357889999999999865 4456778887766542  78899999999999999999999988764211     


Q ss_pred             hchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecC
Q 007047          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG  416 (620)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG  416 (620)
                                                      ....++        +++|.+++||+++++++.+.|.+.+++++++.||
T Consensus       327 --------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        327 --------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             --------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                            011112        3899999999999999999999888999999999


Q ss_pred             CCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcc
Q 007047          417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (620)
Q Consensus       417 ~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~  495 (620)
                      +||++.+++.+........+++|.|+++++++|+| +++.  +++.|+.|||+|+|+.++.|||++++.+.+.| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGN--ELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCC--CCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99998877665544433447899999999999999 6554  45567899999999999999999999999988 68999


Q ss_pred             cccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHH
Q 007047          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (620)
Q Consensus       496 ~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~  572 (620)
                      +|||+|+++++|++++.||.||+||+ +|++|+|.+||+.|.+||.|.+++|++.+++   +.+++++++.+...     
T Consensus       444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----  517 (562)
T PRK12492        444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL-----  517 (562)
T ss_pred             ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC-----
Confidence            99999999999999999999999997 7999999999999999999999999997654   47888887643210     


Q ss_pred             HCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                                  ...++++++.+++..+..|.++.+++-.|+
T Consensus       518 ------------~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~  547 (562)
T PRK12492        518 ------------SVEELKAYCKENFTGYKVPKHIVLRDSLPM  547 (562)
T ss_pred             ------------CHHHHHHHHHHhcccccCCcEEEEeccCCC
Confidence                        012556666666666666666666655543

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-59  Score=510.36  Aligned_cols=460  Identities=25%  Similarity=0.284  Sum_probs=378.4

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ...+++.+.|..+++++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~   84 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV   84 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            44588999999999999999999865   3      36999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      +||+++|++++|+++..+.+++.++++.++++++|++......+.. .....+..+.++...+...          ....
T Consensus        85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~  153 (542)
T PRK07786         85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVL  153 (542)
T ss_pred             HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------cccc
Confidence            9999999999999999999999999999999999998876554322 2222234455555543211          1234


Q ss_pred             eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCC-CCCcEEEEecChhH
Q 007047          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAH  277 (620)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~-~~~d~~~~~~pl~h  277 (620)
                      ++++++...... ........+++++++|||||||.||+|++||+++...+......+     ++ ..++++++.+|++|
T Consensus       154 ~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~  227 (542)
T PRK07786        154 GYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFH  227 (542)
T ss_pred             CHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHH
Confidence            566665443221 122345567899999999999999999999999998887665544     44 56899999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      .+|+...+.++..|+++++.+.   ++..+++.++++++|+++++|+++..+........                    
T Consensus       228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--------------------  287 (542)
T PRK07786        228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP--------------------  287 (542)
T ss_pred             HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------------------
Confidence            9998777888999999998652   89999999999999999999999998865321100                    


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC-c
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-M  432 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~  432 (620)
                                     .           ..++|.+++||+++++++.+++.+.+ +.++++.||+||++.+.+...... .
T Consensus       288 ---------------~-----------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~  341 (542)
T PRK07786        288 ---------------R-----------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAI  341 (542)
T ss_pred             ---------------c-----------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccc
Confidence                           0           02789999999999999999999988 789999999999987766544322 2


Q ss_pred             cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEe
Q 007047          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  512 (620)
Q Consensus       433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~  512 (620)
                      ...+++|.|++++.++|+| +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++++++||.++++
T Consensus       342 ~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~  418 (542)
T PRK07786        342 RKLGSVGKVIPTVAARVVD-ENMN--DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVV  418 (542)
T ss_pred             ccCCCccccCCCceEEEEC-CCCC--CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEE
Confidence            3447899999999999999 6654  445668999999999999999999999999999999999999999999999999


Q ss_pred             ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh-------HHHHHHHHHC
Q 007047          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE-------EDTKKWAYSN  574 (620)
Q Consensus       513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~-------~~~~~~~~~~  574 (620)
                      ||.||+||+ +|++|+|.+||++|.+||.|.+|+|++..++   +.+++++++++       +++.++++++
T Consensus       419 GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~  489 (542)
T PRK07786        419 DRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDR  489 (542)
T ss_pred             ecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhh
Confidence            999999997 7999999999999999999999999987654   47778887643       3455555544

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.9e-59  Score=527.15  Aligned_cols=451  Identities=21%  Similarity=0.287  Sum_probs=352.2

Q ss_pred             cccHHHHHHHHHHhCCC-CceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..|+.++|.++++++|+ ++|+...   +     ++++||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~l  273 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIF  273 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHH
Confidence            47899999999999998 5777531   1     24699999999999999999987 5999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcc-cccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....... ........... +.+.+...            ..
T Consensus       274 A~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~------------~~  340 (718)
T PRK08043        274 GASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKD------------DV  340 (718)
T ss_pred             HHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhh------------hc
Confidence            999999999999999999999999999999999998776542110 01111111222 22221100            00


Q ss_pred             eHHHH--H-hcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047          199 SWDEF--L-HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (620)
Q Consensus       199 ~~~~l--~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl  275 (620)
                      .+.+.  . ..............++|+++++|||||||.||||++||.++...+......+     +++.+|++++.+|+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl  415 (718)
T PRK08043        341 TTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALPL  415 (718)
T ss_pred             chhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCcc
Confidence            11110  0 0000000111234679999999999999999999999999998887766555     78899999999999


Q ss_pred             hHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047          276 AHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (620)
Q Consensus       276 ~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (620)
                      +|.+++.. .+.++..|+++++.+.  ++..+.+.+.++++|+++++|+++..+.+..                      
T Consensus       416 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----------------------  473 (718)
T PRK08043        416 FHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA----------------------  473 (718)
T ss_pred             hhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc----------------------
Confidence            99999865 5678999999998864  6678889999999999999999987654310                      


Q ss_pred             HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCc
Q 007047          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (620)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  432 (620)
                                       +..++        +++|.+++||+++++++.+.+++.+|+++++.||+||++..++...+.. 
T Consensus       474 -----------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-  527 (718)
T PRK08043        474 -----------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA-  527 (718)
T ss_pred             -----------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc-
Confidence                             00111        3899999999999999999999889999999999999987766544322 


Q ss_pred             cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCC--Chhh-------hhcc-ccCCcccccceEE
Q 007047          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDL-------TRES-IIDGWFHTGDIGQ  502 (620)
Q Consensus       433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~--~~~~-------t~~~-~~dgw~~TGDl~~  502 (620)
                      ...+++|+|+||+++++++ +++      .++.|||+++|++++.|||+  +++.       +.+. +.+|||+|||+|+
T Consensus       528 ~~~~svG~p~pg~~~~i~d-~~~------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~  600 (718)
T PRK08043        528 AKPGTVGRILPGMDARLLS-VPG------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVR  600 (718)
T ss_pred             cCCCCCCCcCCCCeeEEec-CCC------CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEE
Confidence            3458999999999999998 433      23569999999999999998  4442       2222 2589999999999


Q ss_pred             EccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc---ChHHHHHHHHHC
Q 007047          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP---CEEDTKKWAYSN  574 (620)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~---~~~~~~~~~~~~  574 (620)
                      +|+||++++.||+||+||+ +|++|+|.|||+++.+|+.+.+++|++.+++   +.+++++..   +.+++.+|++++
T Consensus       601 ~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~~l~~~~~~~  677 (718)
T PRK08043        601 FDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTREKLQQYAREH  677 (718)
T ss_pred             EcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHHHHHHHHHhc
Confidence            9999999999999999997 7999999999999999998888888887654   366666542   346677887766

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-58  Score=501.71  Aligned_cols=473  Identities=22%  Similarity=0.292  Sum_probs=378.6

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      |.++.++|.++++++|+++|+++.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578899999999999999999864   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++..+.+++.++++.+++++++++.+.......        ....+.++.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence            99999999999999999999999999999999998766433210        0112222221100             01


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      ..+.. ............++++++++|||||||.||+|++||.++...+......+     ++..+++++..+|++|.++
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            11111 10111112345788999999999999999999999999987665444444     6788999999999999988


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++.....                          
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--------------------------  258 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--------------------------  258 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence            864 4667899999988776 899999999999999999999999888642110                          


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCC-CccccC
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG  436 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~  436 (620)
                                 ...++        +++|.+++||+++++++.+++.+.| +.++++.||+||++..++..... .....+
T Consensus       259 -----------~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  319 (497)
T PRK06145        259 -----------DRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG  319 (497)
T ss_pred             -----------ccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence                       00111        2789999999999999999999888 68899999999999866554332 223347


Q ss_pred             ccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeeccc
Q 007047          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (620)
Q Consensus       437 ~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~  516 (620)
                      ++|.|++++++++.+ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||++++++||+++++||+|
T Consensus       320 ~~G~~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~  396 (497)
T PRK06145        320 STGRALAHVEIRIAD-GAGR--WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK  396 (497)
T ss_pred             CcccCCCCceEEEEC-CCCC--CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence            899999999999998 6554  3456689999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHH
Q 007047          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (620)
Q Consensus       517 d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (620)
                      |+||+ +|++++|.+||+.|.++|+|.+++|++.++.   +.+++++++.+..-                ....++.+++
T Consensus       397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~~~~  459 (497)
T PRK06145        397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGAT----------------LTLEALDRHC  459 (497)
T ss_pred             ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCC----------------CCHHHHHHHH
Confidence            99996 8999999999999999999999999997654   47888888753210                0112556666


Q ss_pred             HHHHHHHHHHCCCccCCcccc
Q 007047          594 LSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       594 ~~~i~~~~~~~~~~~~~~~~~  614 (620)
                      .+.+.++..|.++.+++=+|+
T Consensus       460 ~~~l~~~~~p~~i~~v~~iP~  480 (497)
T PRK06145        460 RQRLASFKVPRQLKVRDELPR  480 (497)
T ss_pred             HHhhhcCCCCCEEEEeccCCC
Confidence            666666666666666655554

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-59  Score=507.69  Aligned_cols=450  Identities=25%  Similarity=0.327  Sum_probs=363.6

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..+++.++|.+.++++|+++|+++.   +      +.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3478999999999999999999864   3      469999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++..+.+++.++++.++++.++++.+........ .........++.+....            ...+
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAV-RAASPDLTHVVAIGGAR------------AGLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHH-HhhCCcCceEEEeCCCc------------cccc
Confidence            9999999999999999999999999999999999998765433221 11122334445443321            1234


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      +++++..............++++++++|||||||.||+|+++|.++...+......+   ..+....|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            555554332222223345778999999999999999999999999976554322211   01456789999999999998


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      ++...+ .++.|++.++.+.   +++.+++.++++++|++.++|++++.+.+....                        
T Consensus       220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------  274 (528)
T PRK07470        220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV------------------------  274 (528)
T ss_pred             HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc------------------------
Confidence            886543 5667777766642   889999999999999999999999987642110                        


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC------
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD------  430 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~------  430 (620)
                                   ...++        +++|.+++||+++++...+++.+.+|..+++.||+||+++.++.....      
T Consensus       275 -------------~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        275 -------------DRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             -------------CCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccc
Confidence                         00111        389999999999999999999888899999999999998876654321      


Q ss_pred             -CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcE
Q 007047          431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (620)
Q Consensus       431 -~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l  509 (620)
                       .....+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||++
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l  410 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFL  410 (528)
T ss_pred             cccceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeE
Confidence             122347889999999999998 6655  455678999999999999999999999999999999999999999999999


Q ss_pred             EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      ++.||.||+||+ +|++|+|.+||++|.++|.|.+|+|++.+++   +.+++++++.+
T Consensus       411 ~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~  467 (528)
T PRK07470        411 YITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARD  467 (528)
T ss_pred             EEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECC
Confidence            999999999997 7999999999999999999999999998764   36777887643

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.2e-58  Score=503.17  Aligned_cols=485  Identities=23%  Similarity=0.244  Sum_probs=393.4

Q ss_pred             cHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 007047           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (620)
Q Consensus        43 ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  122 (620)
                      ++.++|.+.++++|+++|+.+.   +      +++||+||.+++.++|++|++.|+.+||+|+++++|+.++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4788999999999999999864   3      479999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHH
Q 007047          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (620)
Q Consensus       123 ~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  202 (620)
                      ++|++++|+++..+.+++..+++.++++++|++......+...... ......++.+++....     .........|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHA-----SEGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCcccc-----cCCccccccHHH
Confidence            9999999999999999999999999999999988766544333222 2344455555433210     001223445666


Q ss_pred             HHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 007047          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (620)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  282 (620)
                      +......  ........+++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|.+++.
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            6543321  122334568899999999999999999999999998888776655     678899999999999999988


Q ss_pred             HHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccC
Q 007047          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (620)
Q Consensus       283 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (620)
                      ..+.++..|+++++.+. ++..+.+.++++++|++.++|+++..+.+.....                            
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------  270 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE----------------------------  270 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC----------------------------
Confidence            78888999999998876 8999999999999999999999998875421000                            


Q ss_pred             CCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCccccCcccc
Q 007047          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (620)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  440 (620)
                                .++        +++|.+++||+++++++.+.+++.+ +..+++.||+||++.............++++|.
T Consensus       271 ----------~~~--------~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       271 ----------SAA--------PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             ----------CCc--------cceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence                      001        3899999999999999999999988 688999999999986554433332344589999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc------------CCcccccceEEEccCCc
Q 007047          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV  508 (620)
Q Consensus       441 ~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~------------dgw~~TGDl~~~~~dG~  508 (620)
                      |+++++++|++ +++..  ++.|+.|||+++|+.++.|||++++.+.+.|.            ++||+|||+|++++||+
T Consensus       333 ~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       333 AIPNAEVLVLR-EDGSE--CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ecCCCEEEEEC-CCCCC--CCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            99999999998 65543  45678999999999999999999988876652            34899999999999999


Q ss_pred             EEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhc
Q 007047          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (620)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  585 (620)
                      +++.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.   +.+++++++.....                ..
T Consensus       410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~----------------~~  472 (515)
T TIGR03098       410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----------------LD  472 (515)
T ss_pred             EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC----------------CC
Confidence            9999999999997 7999999999999999999999999997653   57788887533210                01


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          586 LVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       586 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ..++++++.+.+.++..|..+.+++.+|++
T Consensus       473 ~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t  502 (515)
T TIGR03098       473 RAALLAECRARLPNYMVPALIHVRQALPRN  502 (515)
T ss_pred             HHHHHHHHHhhCccccCCCEEEEeccCCCC
Confidence            126777778888888888888888877754

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-58  Score=504.66  Aligned_cols=452  Identities=26%  Similarity=0.331  Sum_probs=372.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|...++++||++|+.+.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a   80 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA   80 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++..+.+++..+++.++++++|++.+....+....... . ...+........      .........+
T Consensus        81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~------~~~~~~~~~~  152 (523)
T PRK08316         81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALL-P-VDTLILSLVLGG------REAPGGWLDF  152 (523)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhc-C-ccceeeeecccc------cccccchhhH
Confidence            9999999999999999999999999999999999988766553322111 1 111111100000      0011234455


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +++....... ........+++++++|||||||.||+|.+||.++..........+     ++..++++++.+|++|..+
T Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            5555433221 123345788999999999999999999999999998877665555     7888999999999999998


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      +.. ...++..|+++++.+. ++..+++.++++++|++.++|.++..+.+...                           
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  279 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD---------------------------  279 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc---------------------------
Confidence            865 4556889999999865 99999999999999999999999988764211                           


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC-ccccC
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~  436 (620)
                                .+..++        +++|.+++||++++.++.+.+++.+ +.++++.||+||++.+++...... ....+
T Consensus       280 ----------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (523)
T PRK08316        280 ----------FDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG  341 (523)
T ss_pred             ----------cccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence                      011112        3899999999999999999999987 789999999999998776654332 23347


Q ss_pred             ccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeeccc
Q 007047          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (620)
Q Consensus       437 ~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~  516 (620)
                      ++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||.+++.||+|
T Consensus       342 ~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~  418 (523)
T PRK08316        342 SAGRPVLNVETRVVD-DDGN--DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKK  418 (523)
T ss_pred             CcccCCCCcEEEEEc-CCCC--CCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccc
Confidence            899999999999999 6654  4445689999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       517 d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |+||+ +|++|+|.+||+.|.++|+|.+++|++.+++   +.+++++++++
T Consensus       419 ~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  468 (523)
T PRK08316        419 DMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKA  468 (523)
T ss_pred             cEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECC
Confidence            99997 8999999999999999999999999997654   47888888754

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.4e-58  Score=513.41  Aligned_cols=445  Identities=18%  Similarity=0.231  Sum_probs=344.2

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCC---CCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      ...|+.++|.++++++|+++|+++.   +.   ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence            3478999999999999999999875   32   124456899999999999999999986 9999999999999999999


Q ss_pred             HHHHHHhCCCEEEec-CCCCC--hhHHHHHHhhcCccEEEEcchhHHHhccccccccc--CccEEEEecCCcHHHHHHHh
Q 007047          117 AMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~  191 (620)
                      ++|||+++|++++|+ ++.++  .+++.+++++++++++|++......+..... ...  ....++.++....       
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-------  179 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLR-NLPRLRRPRVIAIDAIPD-------  179 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHh-hcccccCceEEEeccccc-------
Confidence            999999999999999 57766  7899999999999999998876654322111 111  1123333322100       


Q ss_pred             hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCC-CCCCcEEE
Q 007047          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYL  270 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~~  270 (620)
                                    .. ..........++|+++++|||||||.||||++||+++...+......+     + +.++++++
T Consensus       180 --------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l  239 (612)
T PRK12476        180 --------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGV  239 (612)
T ss_pred             --------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEE
Confidence                          00 001111234678999999999999999999999999988776655444     5 67889999


Q ss_pred             EecChhHHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHHh--hcCCcEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007047          271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (620)
Q Consensus       271 ~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (620)
                      +++|++|.+|+...+.+++.|+++++...     ++..+++.++  ++++|+++.+|+++..+.......          
T Consensus       240 ~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~----------  309 (612)
T PRK12476        240 SWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP----------  309 (612)
T ss_pred             EeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh----------
Confidence            99999999998766665555666555432     6888999994  589999999999988776421000          


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc---CC---eeEeecCC
Q 007047          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGL  417 (620)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~v~~~YG~  417 (620)
                                             ......++        +++| +++||+++++++.++|.+.|   |.   .+++.||+
T Consensus       310 -----------------------~~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~  357 (612)
T PRK12476        310 -----------------------AEGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI  357 (612)
T ss_pred             -----------------------hhhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence                                   00001122        2789 99999999999999998877   43   48999999


Q ss_pred             CCCCCceeeccCCCc--------------------------cccCccccCccCeeEEEeecCC-CCCCCCCCCCCceEEE
Q 007047          418 TETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCV  470 (620)
Q Consensus       418 TE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~i~i~~~~~-~~~~~~~~g~~Gei~v  470 (620)
                      ||++..++...+...                          ...+++|+|++|++++|+| ++ +.  +++.|+.|||++
T Consensus       358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~--~~~~g~~GEl~v  434 (612)
T PRK12476        358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGA--ELPDGEVGEIWL  434 (612)
T ss_pred             hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCc--CCCCCCEEEEEE
Confidence            998765543221100                          0125789999999999999 55 44  455678999999


Q ss_pred             ecCCcccccCCChhhhhcccc-------------------CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHH
Q 007047          471 RGKTLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEY  531 (620)
Q Consensus       471 ~g~~v~~gy~~~~~~t~~~~~-------------------dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~  531 (620)
                      +|+.++.|||++|+.|.+.|.                   ++||+|||+|++ +||+|+|+||+||+||+ +|++|+|.+
T Consensus       435 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~-~G~~I~p~e  512 (612)
T PRK12476        435 HGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVI-DGRNHYPQD  512 (612)
T ss_pred             cCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccCcEEEE-CCcccCHHH
Confidence            999999999999999998883                   249999999998 59999999999999997 899999999


Q ss_pred             HHHHHh-cCcCcce--EEEEecCCC--ceEEEEEEcC
Q 007047          532 LENVYC-VAPIIED--IWVYGDSLK--SMLVAVVVPC  563 (620)
Q Consensus       532 iE~~l~-~~p~V~~--~~V~~~~~~--~~~~a~vv~~  563 (620)
                      ||++|. .||.|.+  ++|++.+++  +.++++|++.
T Consensus       513 IE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~  549 (612)
T PRK12476        513 IEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERA  549 (612)
T ss_pred             HHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEec
Confidence            999998 5899999  677776653  5888888864

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=3.2e-58  Score=504.21  Aligned_cols=501  Identities=23%  Similarity=0.280  Sum_probs=386.4

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      .+.++.++|.++++++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+.+||+|+++++|+++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   89 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF   89 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3458999999999999999999864   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchh--HHHhcccccccccCccEEEEecCCcHHHHH---HHhhcC
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK--VKELLSPDCRSAQRLRVMVCFTSLTAEQKE---MAVQTG  194 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~  194 (620)
                      ||+++|++++|+++..+.+++.++++.++++++|+++..  .....+....  ..+..+++..........   ......
T Consensus        90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (541)
T TIGR03205        90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD  167 (541)
T ss_pred             HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence            999999999999999999999999999999999998632  1111111111  112333333321100000   000011


Q ss_pred             CceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccc-ccCCCCCCcEEEEec
Q 007047          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYLSFL  273 (620)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~-~~~~~~~~d~~~~~~  273 (620)
                      ....++++++..... ........++++++++|||||||.||+|+++|.++....... ..+.. ........+++++.+
T Consensus       168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  245 (541)
T TIGR03205       168 PRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVL  245 (541)
T ss_pred             cccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEec
Confidence            234456666543221 111224567899999999999999999999999987654422 11100 011234457899999


Q ss_pred             ChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       274 pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      |++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|+++..+.+...                    
T Consensus       246 p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  305 (541)
T TIGR03205       246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS--------------------  305 (541)
T ss_pred             cHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--------------------
Confidence            9999988765 5567889999888765 89999999999999999999999988753110                    


Q ss_pred             HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC
Q 007047          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (620)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (620)
                                       ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++.+++.+....
T Consensus       306 -----------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  360 (541)
T TIGR03205       306 -----------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEG  360 (541)
T ss_pred             -----------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCC
Confidence                             000111        3889999999999999999998888999999999999998776654433


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEE
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      ...++++|.|++++.+++++.+ +...+++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||++++++||++++
T Consensus       361 ~~~~~~~G~~~~~~~~~v~~~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i  439 (541)
T TIGR03205       361 PDKPGSIGLMLPGIELDVVSLD-DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFL  439 (541)
T ss_pred             CCCCCCcceeccCceeEEEecC-CCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEE
Confidence            3344789999999999987633 333455667899999999999999999999999999999999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHH
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (620)
                      +||.||+||+ +|++|+|.+||+++.+|+.|.+++|++.+++   +.++++++++++...               ....+
T Consensus       440 ~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~  503 (541)
T TIGR03205       440 VDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKP---------------FSLDE  503 (541)
T ss_pred             EccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCc---------------CCHHH
Confidence            9999999996 7999999999999999999999999987654   478888887543100               01126


Q ss_pred             HHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          589 LQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       589 ~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      +++++.+.++.+..|.++.+++-+|.+
T Consensus       504 l~~~~~~~l~~~~~P~~i~~~~~iP~t  530 (541)
T TIGR03205       504 LRAFLAGKLGKHELPVAVEFVDELPRT  530 (541)
T ss_pred             HHHHHHhhcccccCCcEEEEeccCCCC
Confidence            777788888888888888888766643

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-58  Score=504.86  Aligned_cols=500  Identities=22%  Similarity=0.285  Sum_probs=382.3

Q ss_pred             CCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHH
Q 007047           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      +...+++.++|.++++++|+++|+++.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++
T Consensus        19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~   89 (557)
T PRK07059         19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA   89 (557)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence            345578999999999999999999875   3      4699999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHH-HH--------
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ-KE--------  188 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~--------  188 (620)
                      +|||+++|++++|+++.++.+++.++++.++++++|+++.....+......  .....++......... ..        
T Consensus        90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (557)
T PRK07059         90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR  167 (557)
T ss_pred             HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence            999999999999999999999999999999999999987665433222111  1222333221100000 00        


Q ss_pred             -----HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccc-cCC
Q 007047          189 -----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF-EDK  262 (620)
Q Consensus       189 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~-~~~  262 (620)
                           ...........+++++..............++++++++|||||||.||+|+++|.+++.++......+... ...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~  247 (557)
T PRK07059        168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK  247 (557)
T ss_pred             cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence                 00000112344555554432222223446789999999999999999999999999987765433322110 001


Q ss_pred             -CCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047          263 -MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (620)
Q Consensus       263 -~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (620)
                       ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.+...       
T Consensus       248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------  320 (557)
T PRK07059        248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------  320 (557)
T ss_pred             CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC-------
Confidence             113457788999999988754 5567888888777654  78899999999999999999999998764211       


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCC
Q 007047          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (620)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  418 (620)
                                                    ....++        +++|.++.||+++++.+.+.|.+.+++++++.||+|
T Consensus       321 ------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t  362 (557)
T PRK07059        321 ------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLS  362 (557)
T ss_pred             ------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeeccccc
Confidence                                          011112        278999999999999999999988899999999999


Q ss_pred             CCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccc
Q 007047          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (620)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~T  497 (620)
                      |++.+++.+.......++++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|
T Consensus       363 E~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~T  439 (557)
T PRK07059        363 ETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRT  439 (557)
T ss_pred             cccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceec
Confidence            999877665543333457999999999999998 5554  45567899999999999999999999999888 6899999


Q ss_pred             cceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHC
Q 007047          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (620)
Q Consensus       498 GDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~  574 (620)
                      ||++++++||++++.||++|+|++ +|++|+|.+||++|.+||+|.+++|++.++.   +.++++++..+..+       
T Consensus       440 GDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~-------  511 (557)
T PRK07059        440 GDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL-------  511 (557)
T ss_pred             CcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCC-------
Confidence            999999999999999999999997 7999999999999999999999999986653   47788887643110       


Q ss_pred             CCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                                ...++++++.+.+..+..|.++.+++-.|+
T Consensus       512 ----------~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~  541 (557)
T PRK07059        512 ----------TEEDVKAFCKERLTNYKRPKFVEFRTELPK  541 (557)
T ss_pred             ----------CHHHHHHHHHHhcccccCCcEEEEeccCCC
Confidence                      012455556666666666666666555553

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=6e-57  Score=518.69  Aligned_cols=498  Identities=19%  Similarity=0.284  Sum_probs=399.2

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      +..+|+.++|.+.++++|+++|+...   . ..++++++||+|+.++++++|.+|.+.|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34469999999999999999999642   1 1345678999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHH-HHHhhcCCce
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK-EMAVQTGIKP  197 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~  197 (620)
                      +||+++|+++||+++.  .+++.+++++++++++|++.+....+.....   ..++.+|++++...... ......++..
T Consensus       500 lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            9999999999999753  6789999999999999999888776654322   36888998864211000 0000113356


Q ss_pred             eeHHHHHhcCccCcc-cCCCCCCCCeEEEEe---cCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 007047          198 YSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (620)
Q Consensus       198 ~~~~~l~~~~~~~~~-~~~~~~~~~~a~i~~---TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~  273 (620)
                      ++|++++..+..... ......++|++.|+|   ||||||.||||++||+|++.++........  .....++|++++++
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEec
Confidence            789999987642221 123347899999996   999999999999999999999987643210  01345789999999


Q ss_pred             ChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       274 pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |++|+++....+.+++.|++++..  ++..+++.+++++||+++++|++|+.+.+.+.+.....+.+.+.+++++++.+.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999976677789999998753  789999999999999999999999999999888888888899999999998877


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecC--CCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~--~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (620)
                      +....+   .....+++.+.++++++.+|.++|.+++||+  +++..+..      ++++..+||+||..   +.+.+..
T Consensus       731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCC
Confidence            655543   2345688999999999999999999999984  55533322      67899999999942   3333333


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEE
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      .   ...|.|+|++++||.++++.+..    +..|||+++       |+++|+.|.+. .+||+         +||+|++
T Consensus       799 ~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~---------~dG~L~I  854 (1452)
T PTZ00297        799 F---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWK---------RDRTLRL  854 (1452)
T ss_pred             c---ccCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCc---------cCCeEEE
Confidence            2   22399999999999984443321    236999995       45899999874 46775         6999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHH-HHHHHCCCCC--------CHHH
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK-KWAYSNGHAG--------SFLE  582 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~-~~~~~~~~~~--------~~~~  582 (620)
                      .||+||+||.++|++|+|+.||+.+.++|.|.+++|+|++ ++.++|+|+|+.+.+. +|+.++++..        ...+
T Consensus       855 idRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~-~k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~e  933 (1452)
T PTZ00297        855 LGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADP-SRPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTE  933 (1452)
T ss_pred             EeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecC-CCceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHH
Confidence            9999999999999999999999999999999999999997 4559999999999999 9999988741        4566


Q ss_pred             Hhcc
Q 007047          583 LCSL  586 (620)
Q Consensus       583 ~~~~  586 (620)
                      ++++
T Consensus       934 l~~~  937 (1452)
T PTZ00297        934 LVAY  937 (1452)
T ss_pred             HHHh
Confidence            6553

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.6e-58  Score=505.54  Aligned_cols=457  Identities=28%  Similarity=0.363  Sum_probs=369.0

Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH
Q 007047           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (620)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~  115 (620)
                      ..+....+|.++|.+.++++|+++|+++.   ++.    +.+||+||.++++++|..|.+.|+++||+|+++++|+++++
T Consensus        10 ~~~~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~   82 (559)
T PRK08315         10 DVPLLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWV   82 (559)
T ss_pred             cCChhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            34455578999999999999999999875   433    57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH-----Hhccccc------------ccccCccEEEE
Q 007047          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDC------------RSAQRLRVMVC  178 (620)
Q Consensus       116 ~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~vi~  178 (620)
                      +++|||+++|++++|+++..+.+++..+++.++++++|+++....     .+.....            ...+..+.++.
T Consensus        83 ~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (559)
T PRK08315         83 LTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIF  162 (559)
T ss_pred             HHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEe
Confidence            999999999999999999999999999999999999999875321     1100000            00112233443


Q ss_pred             ecCCcHHHHHHHhhcCCceeeHHHHHhcCccC-----cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhh
Q 007047          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD  253 (620)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~  253 (620)
                      ++...          ......++++.......     ........++++++++|||||||.||+|.+||.++...+....
T Consensus       163 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  232 (559)
T PRK08315        163 LGDEK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIG  232 (559)
T ss_pred             ecccC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHH
Confidence            33211          11234455554332110     1112234678899999999999999999999999998888776


Q ss_pred             hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHH
Q 007047          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (620)
Q Consensus       254 ~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  330 (620)
                      ..+     ++..+|+++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|+++++|+++..++...
T Consensus       233 ~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~  307 (559)
T PRK08315        233 EAM-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHP  307 (559)
T ss_pred             Hhc-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCc
Confidence            665     7889999999999999999865 5667999999986543  8999999999999999999999998765321


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCC-
Q 007047          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-  409 (620)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-  409 (620)
                      ..                                     +..++        +++|.+++||++++.++.+.+.+.++. 
T Consensus       308 ~~-------------------------------------~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~  342 (559)
T PRK08315        308 DF-------------------------------------ARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMS  342 (559)
T ss_pred             cc-------------------------------------CCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCc
Confidence            10                                     00111        388999999999999999999888865 


Q ss_pred             eeEeecCCCCCCCceeeccCCC--ccccCccccCccCeeEEEeecCC-CCCCCCCCCCCceEEEecCCcccccCCChhhh
Q 007047          410 FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT  486 (620)
Q Consensus       410 ~v~~~YG~TE~~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~~~~~-~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t  486 (620)
                      ++++.||+||++.+++.+....  .....++|.|+|+++++|+| ++ +  .+++.|+.|||+|+|+.++.||+++++.+
T Consensus       343 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~--~~~~~g~~GEl~v~g~~~~~gy~~~~~~~  419 (559)
T PRK08315        343 EVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG--ETVPRGEQGELCTRGYSVMKGYWNDPEKT  419 (559)
T ss_pred             ceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccC--CcCCCCCceEEEEECchhhhhhcCChhHH
Confidence            4999999999988766554332  23457899999999999999 55 4  34556789999999999999999999999


Q ss_pred             hccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc
Q 007047          487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (620)
Q Consensus       487 ~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~  562 (620)
                      ...| .++||+|||++++++||.++++||.||+|++ +|++|+|.+||++|.++|+|.+|+|++.+++   +.++++|++
T Consensus       420 ~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  498 (559)
T PRK08315        420 AEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIIL  498 (559)
T ss_pred             hhcCCCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEe
Confidence            9888 7899999999999999999999999999996 7999999999999999999999999997654   467888886


Q ss_pred             C
Q 007047          563 C  563 (620)
Q Consensus       563 ~  563 (620)
                      .
T Consensus       499 ~  499 (559)
T PRK08315        499 R  499 (559)
T ss_pred             C
Confidence            4

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=3.2e-58  Score=505.15  Aligned_cols=448  Identities=23%  Similarity=0.296  Sum_probs=364.6

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++.++|.+.++++||++|+++.   ++     +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999854   33     47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchh-----HHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-----VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      +++|++++|+++..+.+++.++++.+++++++++...     ...+... .......+.++.++....         ...
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~  164 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPL-QNQLPQLQQIVGVDKLAP---------ATS  164 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHH-HhhCCCCcEEEEeCCcCC---------CcC
Confidence            9999999999999999999999999999999997632     1112111 112233445555543221         011


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      ..++.+++...... .......++++++++|||||||.||+|++||.++......+...+     ++..+|++++.+|++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            23455554433211 122345678999999999999999999999999988877655544     678899999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      |.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|.++..+++.....                     
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------  297 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------  297 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence            9998764 5667899999999876 8999999999999999998888776665422110                     


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-cc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC  433 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~  433 (620)
                                      ..++        +++|.+++||+++++++.+.+.+. |+++++.||+||++.+........ ..
T Consensus       298 ----------------~~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        298 ----------------PADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             ----------------CCCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                            0011        389999999999999999888774 999999999999988766544322 22


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEe
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  512 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~  512 (620)
                      ..+++|.|++++.++++| +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+++++++|+++++
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~  429 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARK--TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT  429 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCC--CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence            236789999999999998 6654  44567899999999999999999999998888 6899999999999999999999


Q ss_pred             ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      ||.+|+|++ +|++|+|.+||++|.++|+|.+++|++.+++   +.++++|+++
T Consensus       430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  482 (547)
T PRK06087        430 GRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLK  482 (547)
T ss_pred             ecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEEC
Confidence            999999996 8999999999999999999999999997654   4788888864

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.2e-59  Score=506.79  Aligned_cols=428  Identities=19%  Similarity=0.226  Sum_probs=329.1

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +-+.+.|.++++++|+++|+++.     .++.|+++||+||.++++++|++|.+.  ++||+|+|+++|++++++++|||
T Consensus         2 ~~~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~   74 (525)
T PRK05851          2 NELAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA   74 (525)
T ss_pred             chHHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence            44889999999999999999854     334578999999999999999999987  89999999999999999999999


Q ss_pred             HhCCCEEEecCCC--------CChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhc
Q 007047          122 NALSLICVPLYDT--------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (620)
Q Consensus       122 ~~~G~v~vpi~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (620)
                      +++|++++ +++.        ...+++.++++.++++++|++......+.....    .    +.+.+            
T Consensus        75 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------  133 (525)
T PRK05851         75 WLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------  133 (525)
T ss_pred             HHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc------------
Confidence            99999865 3332        123455677899999999998776543322110    0    00000            


Q ss_pred             CCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCC-CCcEEEEe
Q 007047          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSF  272 (620)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~~~~  272 (620)
                            +.......  .........++|+++++|||||||.||||++||.++...+......+     ++. .+|+++++
T Consensus       134 ------~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~  200 (525)
T PRK05851        134 ------LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSW  200 (525)
T ss_pred             ------cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEc
Confidence                  00000000  00011234678999999999999999999999999999888776665     677 89999999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007047          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (620)
Q Consensus       273 ~pl~h~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (620)
                      +|++|.+++...+.+++.|+++++.+.     ++..+++.+.++++|++..+|.++..+.+... .              
T Consensus       201 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~-~--------------  265 (525)
T PRK05851        201 LPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYAR-R--------------  265 (525)
T ss_pred             CCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhc-c--------------
Confidence            999999998877788999999998752     57789999999999988655544444322110 0              


Q ss_pred             HHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHh---cCC---eeEeecCCCCCC
Q 007047          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETC  421 (620)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~YG~TE~~  421 (620)
                                           ....++        +++|.+++||+++++++.++|.+.   +|.   .+++.||+||++
T Consensus       266 ---------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~  316 (525)
T PRK05851        266 ---------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAEST  316 (525)
T ss_pred             ---------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhc
Confidence                                 000112        288999999999999999888764   354   499999999998


Q ss_pred             CceeeccCCC--------------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhh
Q 007047          422 GPTTVCFPDE--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR  487 (620)
Q Consensus       422 ~~~~~~~~~~--------------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~  487 (620)
                      ..++...+..              ....+++|+|+||++++|+| +++. .+++.|+.|||+|+|++++.|||++++.+ 
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-  393 (525)
T PRK05851        317 CAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID-  393 (525)
T ss_pred             eEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC-
Confidence            7665432210              12236899999999999998 5543 34556789999999999999999998654 


Q ss_pred             ccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc
Q 007047          488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (620)
Q Consensus       488 ~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~  562 (620)
                         .+|||+|||+|+++ +|+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+.++|+.
T Consensus       394 ---~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~  466 (525)
T PRK05851        394 ---PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAA  466 (525)
T ss_pred             ---CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEE
Confidence               37999999999996 8999999999999997 7999999999999999999999999986543   345555543

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=5.1e-58  Score=498.88  Aligned_cols=475  Identities=24%  Similarity=0.328  Sum_probs=378.5

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      ++|.++|.+++ .+|+++|+...   ++     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~   73 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT   73 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            68999999999 99999999764   33     57999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++..+.+++..+++.++++++++++.....+......  .....++.++....             ..+.
T Consensus        74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~  138 (504)
T PRK07514         74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSLL  138 (504)
T ss_pred             HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccHH
Confidence            99999999999999999999999999999999998766544322111  12222333332111             1111


Q ss_pred             HHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 007047          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (620)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (620)
                      +..... ..........++++++++|||||||.||+|.+||.++...+......+     ++..+|++++.+|++|..++
T Consensus       139 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  212 (504)
T PRK07514        139 EAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGL  212 (504)
T ss_pred             Hhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHH
Confidence            211111 111223345689999999999999999999999999999887766555     67889999999999999998


Q ss_pred             HH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007047          282 VI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (620)
Q Consensus       282 ~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (620)
                      .. .+.++..|+++++.+. ++..+++.+  .++|.+.++|.++..+++...                            
T Consensus       213 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~----------------------------  262 (504)
T PRK07514        213 FVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR----------------------------  262 (504)
T ss_pred             HHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------
Confidence            64 5668999999999876 889999988  379999999999988764210                            


Q ss_pred             cCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccc
Q 007047          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (620)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G  439 (620)
                               .....+        +++|.+++||+++++++.+.|++.++.++++.||+||++..++..... .....++|
T Consensus       263 ---------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G  324 (504)
T PRK07514        263 ---------LTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTVG  324 (504)
T ss_pred             ---------CCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCcccc
Confidence                     000111        389999999999999999999998899999999999998665433222 22347899


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCe
Q 007047          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (620)
Q Consensus       440 ~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~  518 (620)
                      .|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.+.+.| .+|||+|||+++++++|++++.||+||+
T Consensus       325 ~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~  402 (504)
T PRK07514        325 FPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDL  402 (504)
T ss_pred             cCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccce
Confidence            999999999999 4443 456677899999999999999999999999988 5899999999999999999999999999


Q ss_pred             EEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHH
Q 007047          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (620)
Q Consensus       519 i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (620)
                      ||+ +|++|+|.+||+++.++++|.+++|++.+++   +.++++++++++.-                ....++++++.+
T Consensus       403 i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~  465 (504)
T PRK07514        403 IIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA----------------LDEAAILAALKG  465 (504)
T ss_pred             EEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC----------------CCHHHHHHHHHh
Confidence            996 7999999999999999999999999997654   47888888753210                011245556666


Q ss_pred             HHHHHHHHCCCccCCccc
Q 007047          596 ELKNAAERNKVIFANWDT  613 (620)
Q Consensus       596 ~i~~~~~~~~~~~~~~~~  613 (620)
                      .+++++.|.++.+++=.|
T Consensus       466 ~l~~~~~p~~i~~v~~~p  483 (504)
T PRK07514        466 RLARFKQPKRVFFVDELP  483 (504)
T ss_pred             hcccCCCCcEEEEeccCC
Confidence            666666666665555444

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.4e-58  Score=503.91  Aligned_cols=453  Identities=27%  Similarity=0.369  Sum_probs=365.7

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.+.++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus        16 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~   88 (558)
T PRK12583         16 LTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQF   88 (558)
T ss_pred             ccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999875   332    579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH-----HHhccccc------------ccccCccEEEEecCC
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDC------------RSAQRLRVMVCFTSL  182 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~------------~~~~~~~~vi~~~~~  182 (620)
                      ||+++|++++|+++.++.+++.++++.++++++|+++...     ..+.....            ...+....++.....
T Consensus        89 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (558)
T PRK12583         89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA  168 (558)
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC
Confidence            9999999999999999999999999999999999976432     11110000            011122233333221


Q ss_pred             cHHHHHHHhhcCCceeeHHHHHhcCccC-----cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcc
Q 007047          183 TAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (620)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~  257 (620)
                      ..          .....|+++.......     ........++++++++|||||||.||+|.+||.++...+......+ 
T Consensus       169 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-  237 (558)
T PRK12583        169 PP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-  237 (558)
T ss_pred             CC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-
Confidence            11          1223455544332211     1112234678999999999999999999999999998887766655 


Q ss_pred             cccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHH
Q 007047          258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (620)
Q Consensus       258 ~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  334 (620)
                          ++..+|++++.+|++|.+|... .+.++..|+++++...  ++..+++.++++++|+++++|+++..+......  
T Consensus       238 ----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--  311 (558)
T PRK12583        238 ----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR--  311 (558)
T ss_pred             ----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc--
Confidence                7888999999999999999865 5667889999887643  889999999999999999999998776532110  


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEe
Q 007047          335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQ  413 (620)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~  413 (620)
                                                         +..++        +++|.+++||+++++++.+++.+.++ ..+++
T Consensus       312 -----------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~  348 (558)
T PRK12583        312 -----------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQI  348 (558)
T ss_pred             -----------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceec
Confidence                                               00112        38999999999999999999988775 57999


Q ss_pred             ecCCCCCCCceeeccCCC--ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-
Q 007047          414 GYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  490 (620)
Q Consensus       414 ~YG~TE~~~~~~~~~~~~--~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-  490 (620)
                      .||+||++.+++.+....  .....++|.|++++.++|++ +++  .+++.|+.|||+++|+.++.||+++++.+...| 
T Consensus       349 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~  425 (558)
T PRK12583        349 AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESID  425 (558)
T ss_pred             cccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcC
Confidence            999999998776654322  22347899999999999999 554  455667899999999999999999999998888 


Q ss_pred             cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       491 ~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      .+|||+|||+|++++||++++.||+||+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++++++++
T Consensus       426 ~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  500 (558)
T PRK12583        426 EDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLH  500 (558)
T ss_pred             CCCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEEC
Confidence            8999999999999999999999999999996 7999999999999999999999999997654   4788888864

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=6.4e-59  Score=596.93  Aligned_cols=467  Identities=19%  Similarity=0.243  Sum_probs=383.4

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.++++++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|
T Consensus      3093 ~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~l 3163 (3956)
T PRK12467       3093 SERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALL 3163 (3956)
T ss_pred             ccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHH
Confidence            3479999999999999999999975   4      469999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|++|.++.+++.+++++++++++|++......+....     . ..++.++...                
T Consensus      3164 avl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~-----~-~~~~~~~~~~---------------- 3221 (3956)
T PRK12467       3164 AVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA-----G-DTALTLDRLD---------------- 3221 (3956)
T ss_pred             HHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc-----C-Cceeeecchh----------------
Confidence            99999999999999999999999999999999999887654331110     1 1122222110                


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                           ..............++++|+++|||||||+||||+++|+++.+.+......+     +++.+|+++++.|++|..
T Consensus      3222 -----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 3291 (3956)
T PRK12467       3222 -----LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDG 3291 (3956)
T ss_pred             -----hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhH
Confidence                 0011111222345789999999999999999999999999999998877766     789999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +....+.+|+.|+++++.+.   ++..+++.+.++++|++..+|++++.+.+....                        
T Consensus      3292 ~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------ 3347 (3956)
T PRK12467       3292 AQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG------------------------ 3347 (3956)
T ss_pred             HHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc------------------------
Confidence            88888899999999999864   789999999999999999999999987642110                        


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCc---
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM---  432 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~---  432 (620)
                                     .++        +++|.+++|||++++++.+.|.+.+ +..+++.||+||+++.++.......   
T Consensus      3348 ---------------~~~--------~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 3404 (3956)
T PRK12467       3348 ---------------ADC--------ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVC 3404 (3956)
T ss_pred             ---------------cCC--------CCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEeccccccc
Confidence                           001        3899999999999999999998877 6889999999999987765433221   


Q ss_pred             -cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCC-------cccccceEEE
Q 007047          433 -CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQI  503 (620)
Q Consensus       433 -~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dg-------w~~TGDl~~~  503 (620)
                       ....++|+|++|++++|+| +++.  +++.|+.|||+|+|+.++.||+++|+.|.+.| .++       ||+|||+|++
T Consensus      3405 ~~~~~~iG~p~~~~~~~v~d-~~~~--~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~ 3481 (3956)
T PRK12467       3405 EAPYAPIGRPVAGRSIYVLD-GQLN--PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481 (3956)
T ss_pred             CCCCCCCccccCCCEEEEEC-CCCC--CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhee
Confidence             1236899999999999998 5554  55677899999999999999999999999999 443       6999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcChHHHHHHHHHCCCCCCHH
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~  581 (620)
                      ++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+  .+.++|+|++....-              
T Consensus      3482 ~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~-------------- 3546 (3956)
T PRK12467       3482 RADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQG-------------- 3546 (3956)
T ss_pred             cCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCc--------------
Confidence            999999999999999998 799999999999999999999999997543  368999999864200              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       582 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                        .....+++++...++.++.|+.+...+-.|.
T Consensus      3547 --~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~ 3577 (3956)
T PRK12467       3547 --DWRETLRDHLAASLPDYMVPAQLLVLAAMPL 3577 (3956)
T ss_pred             --ccHHHHHHHHhccCChhhCCCeeeeeccCCC
Confidence              0012556666666777777766666555443

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.3e-58  Score=500.80  Aligned_cols=467  Identities=20%  Similarity=0.234  Sum_probs=365.3

Q ss_pred             CCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHH
Q 007047           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      .....++.++|.+.++.+|+++|++..   +      +.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++
T Consensus         6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~   76 (540)
T PRK06164          6 APRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL   76 (540)
T ss_pred             ccCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHH
Confidence            344568999999999999999999843   2      4699999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH-----HHhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (620)
                      ++||+++|++++|+++..+.+++.++++.++++++|++++..     ..+...........+.++.++......      
T Consensus        77 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  150 (540)
T PRK06164         77 FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------  150 (540)
T ss_pred             HHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------
Confidence            999999999999999999999999999999999999987642     112111111123344555554211000      


Q ss_pred             cCCceeeHHHHHhcCccCc---ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEE
Q 007047          193 TGIKPYSWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (620)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (620)
                      .......+.++........   .......++++++++|||||||.||+|++||.++...+......+     ++..++++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~  225 (540)
T PRK06164        151 PAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVL  225 (540)
T ss_pred             CCCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            0000011111111110000   011223578899999999999999999999999999888777666     77899999


Q ss_pred             EEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007047          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (620)
Q Consensus       270 ~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (620)
                      ++.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....                
T Consensus       226 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~----------------  289 (540)
T PRK06164        226 LAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGE----------------  289 (540)
T ss_pred             EEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc----------------
Confidence            999999999999877889999999998876 899999999999999999999999988753100                


Q ss_pred             HHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeec-CCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeec
Q 007047          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (620)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  427 (620)
                                            ..++        ++++.+.++| .+...++.+++... ++++++.||+||++.+++..
T Consensus       290 ----------------------~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~  338 (540)
T PRK06164        290 ----------------------RADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQ  338 (540)
T ss_pred             ----------------------cCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeecc
Confidence                                  0011        3778776665 55666777777665 89999999999998876665


Q ss_pred             cCCC--ccccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEE
Q 007047          428 FPDE--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  503 (620)
Q Consensus       428 ~~~~--~~~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~  503 (620)
                      ....  .....+.|.++ +++.++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.|.+.| .+|||+|||+|++
T Consensus       339 ~~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~  416 (540)
T PRK06164        339 PATDPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYT  416 (540)
T ss_pred             CCCCCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEE
Confidence            4332  12224567765 899999998 4433 455677899999999999999999999999998 6899999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcCh------HHHHHHHHHC
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCE------EDTKKWAYSN  574 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~------~~~~~~~~~~  574 (620)
                      ++||.+++.||.||+||+ +|++|+|.+||++|.+||+|.+++|++...  ...+++++++++      +++.++++++
T Consensus       417 ~~~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~  494 (540)
T PRK06164        417 RGDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREA  494 (540)
T ss_pred             cCCceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            999999999999999997 799999999999999999999999998653  347888888743      3455555544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.4e-58  Score=547.92  Aligned_cols=468  Identities=24%  Similarity=0.275  Sum_probs=372.8

Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH
Q 007047           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (620)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~  115 (620)
                      ..++..+++.+.|.++++++|+++|+++.   ++     +++||+||.++++++|+.|.+ ++++||+|+++++|+++++
T Consensus       609 ~~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~  679 (1146)
T PRK08633        609 SRKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGA  679 (1146)
T ss_pred             hhcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHH
Confidence            34466788999999999999999999853   22     479999999999999999987 4899999999999999999


Q ss_pred             HHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-cccCccEEEEecCCcHHHHHHHhhcC
Q 007047          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTG  194 (620)
Q Consensus       116 ~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (620)
                      +++|||+++|++++|+++..+.+++.+++++++++.+++++.....+...... .......++..++.....        
T Consensus       680 ~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  751 (1146)
T PRK08633        680 LANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------  751 (1146)
T ss_pred             HHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------
Confidence            99999999999999999999999999999999999999998776655321100 112223344443211100        


Q ss_pred             CceeeHHHHHhcCccC-----cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEE
Q 007047          195 IKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (620)
Q Consensus       195 ~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (620)
                      .....+.+........     ........++|+++++|||||||.||+|++||+++...+......+     +..++|++
T Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~  826 (1146)
T PRK08633        752 SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVI  826 (1146)
T ss_pred             chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            0000111111110000     0001345689999999999999999999999999999888766655     67889999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       270 ~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      ++.+|++|.+++.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+...               
T Consensus       827 l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------  891 (1146)
T PRK08633        827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK---------------  891 (1146)
T ss_pred             EEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc---------------
Confidence            99999999999875 6778999999988764  88999999999999999999999988764211               


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceee
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  426 (620)
                                            .+..++        +++|.+++||+++++++.+++++.+|.++++.||+||++.+++.
T Consensus       892 ----------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~  941 (1146)
T PRK08633        892 ----------------------LHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASV  941 (1146)
T ss_pred             ----------------------cCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEE
Confidence                                  001111        38999999999999999999999899999999999999887665


Q ss_pred             ccCCC---------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC----C
Q 007047          427 CFPDE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----G  493 (620)
Q Consensus       427 ~~~~~---------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d----g  493 (620)
                      ..++.         ....+++|+|+||++++|+| ++++ .+++.|+.|||+++|+.++.||+++|+.|.+.+.+    |
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~ 1019 (1146)
T PRK08633        942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIG 1019 (1146)
T ss_pred             ecCcccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCC
Confidence            43221         12347899999999999999 4433 45567789999999999999999999999999877    9


Q ss_pred             cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCc--CcceEEEEecCCC---ceEEEEEEcC---hH
Q 007047          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDIWVYGDSLK---SMLVAVVVPC---EE  565 (620)
Q Consensus       494 w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p--~V~~~~V~~~~~~---~~~~a~vv~~---~~  565 (620)
                      ||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||  .+.+|+|++.+|+   +.+++++++.   .+
T Consensus      1020 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 1098 (1146)
T PRK08633       1020 WYVTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVE 1098 (1146)
T ss_pred             eEECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHH
Confidence            9999999999999999999999999996 799999999999999999  5668999987765   4788888753   34


Q ss_pred             HHHHHHHH
Q 007047          566 DTKKWAYS  573 (620)
Q Consensus       566 ~~~~~~~~  573 (620)
                      ++.+++.+
T Consensus      1099 ~l~~~~~~ 1106 (1146)
T PRK08633       1099 ELKRAIKE 1106 (1146)
T ss_pred             HHHHHHHh
Confidence            55555543

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=7.1e-58  Score=500.51  Aligned_cols=457  Identities=19%  Similarity=0.217  Sum_probs=366.7

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      +.++.++|.++++  ||++|+++.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|++++++++||
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            5789999988886  999999864   2      4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH----HHhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      |+++|++++++.+.....++..+++.+++++++++....    ......+....+..+.++.....             .
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence            999999888777777788899999999999999976421    11111111222333444433221             1


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      ...+.+++..... ........++++++++|||||||.||+|++||.++...+......+     ++..+|++++.+|++
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            2234444433221 1122345688999999999999999999999999999888766665     788899999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.+......                 
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-----------------  296 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR-----------------  296 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence            9888753  5667999999988765 8889999999999999999999999987643211000                 


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                        ..+        +++|.+++||+++++++.+.+.+.+|+++++.||+||++............
T Consensus       297 ------------------~~~--------~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  350 (536)
T PRK10946        297 ------------------AQL--------ASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER  350 (536)
T ss_pred             ------------------ccc--------cceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence                              001        389999999999999999999988899999999999976444332222233


Q ss_pred             ccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEE
Q 007047          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       434 ~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      ..+++|.|+ |++.++|+| +++.  +++.|+.|||+++|+.++.||+++++.|.+.| .||||+|||+|++|+||++++
T Consensus       351 ~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~  427 (536)
T PRK10946        351 IFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV  427 (536)
T ss_pred             ccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence            347899998 799999998 5554  45567899999999999999999999999988 689999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC----hHHHHHHHHHC
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC----EEDTKKWAYSN  574 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~----~~~~~~~~~~~  574 (620)
                      .||.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.+++   +.++|+++++    .+++.++++++
T Consensus       428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~  496 (536)
T PRK10946        428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQ  496 (536)
T ss_pred             eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhC
Confidence            9999999996 8999999999999999999999999997764   4788888864    45666666654

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-57  Score=498.61  Aligned_cols=446  Identities=23%  Similarity=0.262  Sum_probs=364.8

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..|+.++|.++++++|+++|+++.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999864   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcch-hHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      |+++|++++|+++..+.+++..+++.++++.+++++. ....... ..........++.+......            ..
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~  148 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDG------------VD  148 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccch------------hh
Confidence            9999999999999999999999999999999999876 3322211 11222334445554432210            00


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      ..+....... ........++++++++|||||||.||+|++||.++...+......+     .+..++++++.+|++|..
T Consensus       149 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~  222 (524)
T PRK06188        149 LLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG  222 (524)
T ss_pred             HHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence            0011111101 1111223466799999999999999999999999999888766665     778899999999999988


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ++. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++.....                         
T Consensus       223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------------------  276 (524)
T PRK06188        223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-------------------------  276 (524)
T ss_pred             hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------
Confidence            764 4667889999999876 8999999999999999999999998886531110                         


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-----cc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----MC  433 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----~~  433 (620)
                                  ..++        +++|.+++||++++++....+.+.++..+++.||+||++..++......     ..
T Consensus       277 ------------~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (524)
T PRK06188        277 ------------TRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK  336 (524)
T ss_pred             ------------CCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence                        0111        3899999999999999888888888988999999999977665543321     23


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEee
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                      ...++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++++++||++++.|
T Consensus       337 ~~~~~G~p~~g~~v~i~~-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G  413 (524)
T PRK06188        337 RLTSCGRPTPGLRVALLD-EDGR--EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD  413 (524)
T ss_pred             cCCccccccCCcEEEEEc-CCCC--CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEe
Confidence            447899999999999998 6554  4556789999999999999999999999999999999999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++   +.+++++++++
T Consensus       414 R~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  466 (524)
T PRK06188        414 RKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRP  466 (524)
T ss_pred             ccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECC
Confidence            99999996 8999999999999999999999999997654   47888888753

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2e-57  Score=500.19  Aligned_cols=463  Identities=24%  Similarity=0.330  Sum_probs=354.8

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .++...|...++.+|+++|+.+.   +      +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            45889999999999999999864   2      46999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc------cccCccEEEEecCCcHHHHHHHhhcCC
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (620)
                      +++|++++|+++..+.+++.++++.++++.+|+++.......+....      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999988765443222110      001122334433211000000000112


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl  275 (620)
                      +...|++++...............+++++++|||||||.||||++||.++..........+     ++..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            3445666655432111111122345678899999999999999999999876655443333     67788999999999


Q ss_pred             hHHHHHHHHH-HHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          276 AHILDRVIEE-YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       276 ~h~~g~~~~~-~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      +|.+++...+ ..+..|+++++...++..+++.++++++|++.++|+++..+.+......                    
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  305 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--------------------  305 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--------------------
Confidence            9999876544 3566777776655699999999999999999999999998865321100                    


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC----
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----  430 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~----  430 (620)
                                      ..++        ++++.++++|+++++.+.++|++. +.++++.||+||+++.++.+...    
T Consensus       306 ----------------~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        306 ----------------ILPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             ----------------cccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                            0001        388999999999999999999875 88999999999986554432110    


Q ss_pred             ------CccccCccccCccCee-EEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEE
Q 007047          431 ------EMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (620)
Q Consensus       431 ------~~~~~~~~G~~~~~~~-i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~  503 (620)
                            ......+.|.++++.+ ++|++.+++...+.+.++.|||+++|++++.|||++++.|.+.|.+|||+|||+|++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                  0111135677888875 788873334433333336899999999999999999999999999999999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      +++|+++++||.||+||+ +|++|+|.+||.+|.+||.|.+|+|++.+++   +.+++++++.+
T Consensus       441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  503 (567)
T PLN02479        441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKP  503 (567)
T ss_pred             cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecC
Confidence            999999999999999996 7999999999999999999999999997654   47888888753

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-57  Score=497.68  Aligned_cols=469  Identities=23%  Similarity=0.269  Sum_probs=369.9

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|+++++++||+++++..   .  .+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~l   82 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWY   82 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Confidence            3469999999999999999999853   1  2335789999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++.++.+++.++++.++++.++++.+....+.+... .....+.++...+....    ..........
T Consensus        83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~  157 (542)
T PRK06018         83 GIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHM----PQTTLKNAVA  157 (542)
T ss_pred             HHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEecccccc----cccCcccccc
Confidence            999999999999999999999999999999999999877665544322 22344555554432110    0000112335


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHH-HHh-hhhhhhcccccCCCCCCcEEEEecChhH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~-~~~-~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (620)
                      |.+++..... ........++++++++|||||||.||+|++||++.+ ... ......+     ++..+|+++..+|++|
T Consensus       158 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h  231 (542)
T PRK06018        158 YEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFH  231 (542)
T ss_pred             HHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHH
Confidence            6666554321 112234467889999999999999999999999743 222 2222233     6788999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (620)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (620)
                      .+++...+.++..|+++++...  ++..+++.++++++|++.++|+++..+.+......                     
T Consensus       232 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------  290 (542)
T PRK06018        232 ANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG---------------------  290 (542)
T ss_pred             HhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC---------------------
Confidence            9988776778899999988653  78899999999999999999999998875332110                     


Q ss_pred             HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC----
Q 007047          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (620)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~----  431 (620)
                                      .++        +++|.+++||+++++++.++|++ ++.++++.||+||++.+.+.+....    
T Consensus       291 ----------------~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  345 (542)
T PRK06018        291 ----------------LKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSK  345 (542)
T ss_pred             ----------------CCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCcccccc
Confidence                            011        38999999999999999999999 8999999999999998765542111    


Q ss_pred             ------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEc
Q 007047          432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL  504 (620)
Q Consensus       432 ------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~  504 (620)
                            .....++|.|.++++++|+| +++...+.+.+..|||+++|+.++.||+++.   ...+ .+|||+|||+++++
T Consensus       346 ~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~  421 (542)
T PRK06018        346 LPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATID  421 (542)
T ss_pred             CCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEc
Confidence                  01125789999999999999 7777666655568999999999999999842   2333 68999999999999


Q ss_pred             cCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHHHHHHHHHCC
Q 007047          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EEDTKKWAYSNG  575 (620)
Q Consensus       505 ~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~~~~~~~~~~  575 (620)
                      +||++++.||.+|+|++ +|++|+|.+||+.+.+||+|.+|+|++.+++   +.+.++|++.      .+++.++++++.
T Consensus       422 ~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l  500 (542)
T PRK06018        422 AYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKI  500 (542)
T ss_pred             CCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhC
Confidence            99999999999999996 8999999999999999999999999997654   4677777753      355666666654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.1e-57  Score=549.03  Aligned_cols=433  Identities=21%  Similarity=0.260  Sum_probs=359.9

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++||++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|++++++++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999865   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.++++.+++++++++......+...     .... ++.                     +
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~-~~~---------------------~  580 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDLT-SLC---------------------Y  580 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCce-eee---------------------c
Confidence            999999999999999999999999999999999988765543211     0110 111                     1


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      ++.....  .........++++++++|||||||.||||+++|+++.+.+......+     ++..+|++++..|++|..+
T Consensus       581 ~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        581 NAPLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             ccccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence            1110000  01111223688999999999999999999999999999888777666     7889999999999999988


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +...+.++..|+++++.+.    ++..+.+.++++++|++.++|+++..+.+........                    
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~--------------------  713 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR--------------------  713 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc--------------------
Confidence            8878889999999999763    7899999999999999999999998876532111000                    


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-----
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----  431 (620)
                                     ..+        +++|.+++||+++++++.+.|.+.++.++++.||+||++..++......     
T Consensus       714 ---------------~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  770 (1296)
T PRK10252        714 ---------------QSC--------ASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA  770 (1296)
T ss_pred             ---------------ccC--------CCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence                           000        3899999999999999999999888999999999999988766554322     


Q ss_pred             -ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-c------CCcccccceEEE
Q 007047          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQI  503 (620)
Q Consensus       432 -~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~------dgw~~TGDl~~~  503 (620)
                       .....++|.|++++.++|+| +++.  +++.|+.|||+|+|+.++.||+++|+.|.+.| .      ++||+|||+|++
T Consensus       771 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~  847 (1296)
T PRK10252        771 VRGSSVPIGYPVWNTGLRILD-ARMR--PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW  847 (1296)
T ss_pred             cCCCCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence             12236799999999999998 5554  45567899999999999999999999999998 3      239999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEec---------CCCceEEEEEEcC
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD---------SLKSMLVAVVVPC  563 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~---------~~~~~~~a~vv~~  563 (620)
                      ++||.++++||+||+||+ +|++|+|.|||++|.+||+|.+|+|+..         ++.+.++|+|++.
T Consensus       848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~  915 (1296)
T PRK10252        848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQ  915 (1296)
T ss_pred             cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcC
Confidence            999999999999999998 7999999999999999999999987642         1124799999975

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-57  Score=493.79  Aligned_cols=442  Identities=19%  Similarity=0.248  Sum_probs=353.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..++.++|.+++.  ++++|+++.    +     +++||.||.++++++|++|.+. |+++|++|+++++|+++++++++
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~l   72 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLG   72 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578899988774  789999864    3     5799999999999999999997 89999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++..+.+++.++++.++++++|+++.....+....    ... .++..+.                ..
T Consensus        73 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~  131 (529)
T PRK07867         73 AAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PA  131 (529)
T ss_pred             HHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------cc
Confidence            99999999999999999999999999999999999987765432211    111 1222211                12


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      |.+++..............++++++++|||||||.||+|++||.++..........+     ++..+|++++.+|++|.+
T Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~  206 (529)
T PRK07867        132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSN  206 (529)
T ss_pred             HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHH
Confidence            444433221111222345789999999999999999999999999998887766665     778899999999999999


Q ss_pred             HHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007047          280 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (620)
Q Consensus       280 g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (620)
                      ++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+.+..++......                        
T Consensus       207 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~------------------------  262 (529)
T PRK07867        207 AVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP------------------------  262 (529)
T ss_pred             HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc------------------------
Confidence            8865 4557889999988765 8999999999999999999999988765321100                        


Q ss_pred             hccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCc
Q 007047          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (620)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~  437 (620)
                               ..            ...++|. ++||+.+++.. ..+.+.+|.++++.||+||+++.++....   ...++
T Consensus       263 ---------~~------------~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~~  316 (529)
T PRK07867        263 ---------DD------------ADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPGA  316 (529)
T ss_pred             ---------cc------------cccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCCC
Confidence                     00            0026774 56888888765 55666679999999999999876543321   23378


Q ss_pred             cccCccCeeEEEeecCCCCCCCCCCCC------------CceEEE-ecCCcccccCCChhhhhccccCCcccccceEEEc
Q 007047          438 AGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL  504 (620)
Q Consensus       438 ~G~~~~~~~i~i~~~~~~~~~~~~~g~------------~Gei~v-~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~  504 (620)
                      +|.|+++  +++++.+++.  +++.|+            .|||++ +|+.++.||+++++.+.+.|.+|||+|||+|+++
T Consensus       317 ~g~~~~~--~~i~~~~~~~--~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  392 (529)
T PRK07867        317 LGPLPPG--VAIVDPDTGT--ECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRD  392 (529)
T ss_pred             cCCCCCC--EEEEECCCCC--CCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEe
Confidence            8999999  6777733333  334445            899999 9999999999999999999999999999999999


Q ss_pred             cCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHHHHHHHHHC
Q 007047          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EEDTKKWAYSN  574 (620)
Q Consensus       505 ~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~~~~~~~~~  574 (620)
                      ++|++++.||+||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.      .+++.++++++
T Consensus       393 ~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~  470 (529)
T PRK07867        393 ADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQ  470 (529)
T ss_pred             CCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhh
Confidence            99999999999999997 8999999999999999999999999998764   4778888753      45677777653

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=4.6e-57  Score=497.40  Aligned_cols=496  Identities=23%  Similarity=0.301  Sum_probs=378.8

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..++.++|.++++++|+++|+++.    +     +.+||+||.+++.++|+.|. +.|+++||+|+++++|++++++++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            357999999999999999999864    3     47999999999999999997 6899999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcH-----H-H------H
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-----E-Q------K  187 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-----~-~------~  187 (620)
                      ||+++|++++|++|.++.+++.++++.++++++|+++.....+.......  ....++.......     . .      .
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence            99999999999999999999999999999999999887665443322211  1223332210000     0 0      0


Q ss_pred             HH---HhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCC
Q 007047          188 EM---AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (620)
Q Consensus       188 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (620)
                      ..   ..........+.+................++++++++|||||||.||+|.+||.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence            00   00000112334454443322222233456889999999999999999999999999887765544331110 123


Q ss_pred             C-CcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchH
Q 007047          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (620)
Q Consensus       265 ~-~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (620)
                      . .+++++.+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+.+...         
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------  322 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG---------  322 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence            3 467788999999998764 4556677777766543  78999999999999999999999988764210         


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCC
Q 007047          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (620)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~  420 (620)
                                                  ....+++        ++|.+++||+++++.+.+.|++.+|+.+++.||+||+
T Consensus       323 ----------------------------~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        323 ----------------------------FDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             ----------------------------cCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                        1112232        8899999999999999999999889999999999999


Q ss_pred             CCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccc
Q 007047          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  499 (620)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGD  499 (620)
                      +..++.+........+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGT--VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            9877665543334447899999999999999 6654  44566899999999999999999999998888 689999999


Q ss_pred             eEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCC
Q 007047          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  576 (620)
Q Consensus       500 l~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~  576 (620)
                      +|+++++|++++.||.+|+|++ +|++|+|.+||++|..||+|.+|+|++.++.   +.++++++.+....         
T Consensus       444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~---------  513 (560)
T PRK08751        444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPAL---------  513 (560)
T ss_pred             eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCC---------
Confidence            9999999999999999999997 7999999999999999999999999997654   36666666532100         


Q ss_pred             CCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          577 AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                              ...++++++...+.++..|..+.+++=+|+
T Consensus       514 --------~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~  543 (560)
T PRK08751        514 --------TAEDVKAHARANLTGYKQPRIIEFRKELPK  543 (560)
T ss_pred             --------CHHHHHHHHHHhhhhccCCeEEEEhhhCCC
Confidence                    012555666666666666666666655553

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-57  Score=495.30  Aligned_cols=443  Identities=19%  Similarity=0.210  Sum_probs=348.8

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCcHhHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      .|+.++|.+++  .|+++|+++.   +      ..+||.||.++++++|..|.+.|+ .+||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            57888998764  7999999764   3      479999999999999999999999 8999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|++|.++.+++.++++.++++++|++.+....+....   .+..+. +.++..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVRV-LDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCceE-EEccch----------------hh
Confidence            9999999999999999999999999999999999887665443221   122222 222211                12


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      .+++..... ..+.....++++++++|||||||.||||.++|.++...+......+     ++..+|++++.+|++|.++
T Consensus       132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            233221111 1111235679999999999999999999999999998877766666     7888999999999999988


Q ss_pred             HHHH-HHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          281 RVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       281 ~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      +... +.++..|+++++.+. ++..+++.++++++|++..+|.++..+.......                         
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~-------------------------  260 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERP-------------------------  260 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc-------------------------
Confidence            8654 457899999988765 8999999999999999999999988765321000                         


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCcc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~  438 (620)
                                 . .        ...+++.+ + |++++++..+.+.+.++.++++.||+||++.+++....   ...+++
T Consensus       261 -----------~-~--------~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~v  315 (540)
T PRK13388        261 -----------D-D--------ADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREPG---TPPGSI  315 (540)
T ss_pred             -----------c-c--------cccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCCC---CCCCCC
Confidence                       0 0        00256643 3 56677888888888889999999999999876654321   223789


Q ss_pred             ccCccCeeEE-----------EeecCCCCCCCCCCCCCceEEEe-cCCcccccCCChhhhhccccCCcccccceEEEccC
Q 007047          439 GPVSVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (620)
Q Consensus       439 G~~~~~~~i~-----------i~~~~~~~~~~~~~g~~Gei~v~-g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d  506 (620)
                      |+|++|+++.           ++| +++. ...+.+..|||+++ |+.++.||+++|+.+.+.|.+|||+|||+|++++|
T Consensus       316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~-~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d  393 (540)
T PRK13388        316 GRGAPGVAIYNPETLTECAVARFD-AHGA-LLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD  393 (540)
T ss_pred             CCCCCCcEEEcCCCCccccceecc-Cccc-cccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence            9999997653           222 1121 11134568999998 99999999999999999999999999999999999


Q ss_pred             CcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHHHHHHHHHC
Q 007047          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EEDTKKWAYSN  574 (620)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~~~~~~~~~  574 (620)
                      |++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.      .+++.++++.+
T Consensus       394 g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~  469 (540)
T PRK13388        394 GWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQ  469 (540)
T ss_pred             CcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhh
Confidence            999999999999997 8999999999999999999999999997754   3667777653      34666776643

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5e-57  Score=497.21  Aligned_cols=471  Identities=23%  Similarity=0.322  Sum_probs=361.9

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..+++.++|.+.++++|+++|+++.   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4478999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCc--H--HH--HHHHh--
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A--EQ--KEMAV--  191 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~--~--~~--~~~~~--  191 (620)
                      ||+++|++++|++|..+.+++.++++.++++++++++.....+......  .....++......  .  ..  .....  
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence            9999999999999999999999999999999999988654433221110  1112222211000  0  00  00000  


Q ss_pred             --------hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCC
Q 007047          192 --------QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (620)
Q Consensus       192 --------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (620)
                              ........|..+.... ..........++++++++|||||||.||+|.++|.+++.........+    ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~  245 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNC  245 (563)
T ss_pred             cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCC
Confidence                    0000001122221111 111111112357899999999999999999999999976543322211    022


Q ss_pred             -CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchH
Q 007047          264 -TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (620)
Q Consensus       264 -~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (620)
                       ..++++++.+|++|.+++.. ...+++.|+++++.+. ++..+++.++++++|++.++|+++..+++...         
T Consensus       246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------  316 (563)
T PRK06710        246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL---------  316 (563)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence             34568899999999998864 4557889999998766 89999999999999999999999998764211         


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCC
Q 007047          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (620)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~  420 (620)
                                                  ....++        +++|.+++||+++++++.+++.+.++.++++.||+||+
T Consensus       317 ----------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  360 (563)
T PRK06710        317 ----------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES  360 (563)
T ss_pred             ----------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence                                        001112        27899999999999999999999889999999999999


Q ss_pred             CCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccce
Q 007047          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI  500 (620)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl  500 (620)
                      +.++..........++++|.+++++.+++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~  438 (563)
T PRK06710        361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV  438 (563)
T ss_pred             ccccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence            8765544332333347899999999999998 4333 4566678999999999999999999999999999999999999


Q ss_pred             EEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHHHHHHH
Q 007047          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EEDTKKWA  571 (620)
Q Consensus       501 ~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~~~~~~  571 (620)
                      +++++||+++++||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.   +.++++|++.      .+++.+++
T Consensus       439 ~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~  517 (563)
T PRK06710        439 GYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFA  517 (563)
T ss_pred             EEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHH
Confidence            999999999999999999997 7999999999999999999999999997653   4788888854      34455555


Q ss_pred             HHC
Q 007047          572 YSN  574 (620)
Q Consensus       572 ~~~  574 (620)
                      +++
T Consensus       518 ~~~  520 (563)
T PRK06710        518 RKY  520 (563)
T ss_pred             HHh
Confidence            543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.1e-57  Score=491.84  Aligned_cols=468  Identities=21%  Similarity=0.238  Sum_probs=368.9

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.+.|.++++++||++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3478999999999999999999753   2      369999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999887665442211       11222221100               


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                        ...      .....+..+++.++++|||||||.||+|+++|..... .......+  ...++..+|++++.+|++|.+
T Consensus       162 --~~~------~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~pl~h~~  230 (516)
T PRK13383        162 --GAE------ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSA-VGVWVTIL--DRTRLRTGSRISVAMPMFHGL  230 (516)
T ss_pred             --hhh------cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhh-hhhHHhHH--hhhccCCCCeEEEecCCcchh
Confidence              000      0001112345678999999999999999999974322 11111111  112677899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ++...+.++..|+++++... +++.+++.++++++|.+.++|+++..+.+......                        
T Consensus       231 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  286 (516)
T PRK13383        231 GLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR------------------------  286 (516)
T ss_pred             hHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc------------------------
Confidence            98777778999999988765 89999999999999999999999988764321100                        


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCcc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~  438 (620)
                                 ....+        +++|.+++||+++++++.++|.+.++..+++.||+||++..+..+........+++
T Consensus       287 -----------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  347 (516)
T PRK13383        287 -----------ARNPL--------PQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETV  347 (516)
T ss_pred             -----------ccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcc
Confidence                       00001        38999999999999999999999999999999999999876655443333345789


Q ss_pred             ccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCe
Q 007047          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (620)
Q Consensus       439 G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~  518 (620)
                      |.|+|+++++|+| +++.  +++.|+.|||+++|+.++.||++++.   ..+.+|||+|||+|++|++|++++.||.||+
T Consensus       348 G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~  421 (516)
T PRK13383        348 GKPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDM  421 (516)
T ss_pred             cCCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEeccccce
Confidence            9999999999998 5554  55567899999999999999998764   3346899999999999999999999999999


Q ss_pred             EEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHH
Q 007047          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (620)
Q Consensus       519 i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (620)
                      ||+ +|++|+|.+||++|.+||.|.+++|++.++.   +.+.++|++++..        ..        ...++++++.+
T Consensus       422 i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~--------~~--------~~~~l~~~~~~  484 (516)
T PRK13383        422 IIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGS--------GV--------DAAQLRDYLKD  484 (516)
T ss_pred             EEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC--------CC--------CHHHHHHHHHH
Confidence            997 8999999999999999999999999996653   5788888875421        00        01256677777


Q ss_pred             HHHHHHHHCCCccCCccccc
Q 007047          596 ELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       596 ~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .++.+..|.++.+++-+|++
T Consensus       485 ~l~~~~~p~~i~~v~~iP~t  504 (516)
T PRK13383        485 RVSRFEQPRDINIVSSIPRN  504 (516)
T ss_pred             hcccCCCCcEEEEeCCCCCC
Confidence            77777777777777666643

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=7.8e-57  Score=489.72  Aligned_cols=485  Identities=21%  Similarity=0.199  Sum_probs=385.7

Q ss_pred             cccHHHHHHHH-HHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~-a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      .+...+++.++ ++.+||++|++..   +      ..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            45677888887 5679999999753   2      469999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++..+.+++.++++.++++++|++......+.+... ..+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------cccc
Confidence            999999999999999999999999999999999999877655433221 2234445555443211           1234


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCcEEEEecChhHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      +.++..... .........++++++++|||||||.||+|+++|+++...+.. ....+     ++..+|+++..+|++|.
T Consensus       142 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  215 (508)
T TIGR02262       142 LAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA  215 (508)
T ss_pred             HHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence            444443221 122233456889999999999999999999999999887765 23333     67889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (620)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (620)
                      +++.. .+.++..|+++++.+.  ++..++..++++++|++.++|.++..+.+....                       
T Consensus       216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~-----------------------  272 (508)
T TIGR02262       216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL-----------------------  272 (508)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----------------------
Confidence            98864 5567889999988764  789999999999999999999988776431100                       


Q ss_pred             HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcccc
Q 007047          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (620)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~  435 (620)
                                    ...        ...++|.+++||+++++++.+.|.+.++.++++.||+||++.+.+.+.... ...
T Consensus       273 --------------~~~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~  329 (508)
T TIGR02262       273 --------------PAE--------DQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD-VRY  329 (508)
T ss_pred             --------------ccc--------ccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccC-CCC
Confidence                          000        013899999999999999999999989999999999999997665543332 233


Q ss_pred             CccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecc
Q 007047          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (620)
Q Consensus       436 ~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~  515 (620)
                      +++|.|+++++++++| +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++++++||.+++.||.
T Consensus       330 ~~~G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~  406 (508)
T TIGR02262       330 GTSGKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT  406 (508)
T ss_pred             CCcCCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence            7899999999999999 5554  455678999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHH
Q 007047          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (620)
Q Consensus       516 ~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (620)
                      ||+|++ +|.+++|.+||+.|.+||+|.++++++.++.   +.+.+++++.++.-.        ..     ....+++++
T Consensus       407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~-----~~~~~i~~~  472 (508)
T TIGR02262       407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDI--------DT-----ALETELKEH  472 (508)
T ss_pred             cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCcc--------cc-----ccHHHHHHH
Confidence            999997 6999999999999999999999999986543   477788887543100        00     001256677


Q ss_pred             HHHHHHHHHHHCCCccCCccccc
Q 007047          593 ILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       593 ~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      +.+.++++..|..+..++=+|++
T Consensus       473 ~~~~l~~~~~p~~i~~~~~iP~t  495 (508)
T TIGR02262       473 VKDRLAPYKYPRWIVFVDDLPKT  495 (508)
T ss_pred             HHHhcccCCCCceEEEecCCCCC
Confidence            77777777777777766666644

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-57  Score=489.73  Aligned_cols=455  Identities=22%  Similarity=0.278  Sum_probs=356.4

Q ss_pred             HHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEE
Q 007047           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (620)
Q Consensus        49 ~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~  128 (620)
                      +.+++.+||++|+.+..  ++     +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~~--~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDLA--LG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEecC--CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            45678899999997530  22     579999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCc
Q 007047          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (620)
Q Consensus       129 vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  208 (620)
                      +|+++..+.+++.++++.++++++|+++.......           .                     ...++++.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence            99999999999999999999999999765432100           0                     011111111110


Q ss_pred             c-CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHH
Q 007047          209 V-NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  286 (620)
Q Consensus       209 ~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~  286 (620)
                      . .........++++++++|||||||.||+|.+||+++...+.......     ....+|++++.+|++|.+++.. +..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence            0 11112234578899999999999999999999999988777665544     5778999999999999999875 556


Q ss_pred             HhhcCcEEEEecC-ChHHHHHHHh--hcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007047          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (620)
Q Consensus       287 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (620)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|+++..+.+...                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            7889999988765 7888888885  4899999999999987753210                                


Q ss_pred             CchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC--CccccCccccC
Q 007047          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV  441 (620)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~~  441 (620)
                           .+...+        +++|.+++||++++....+.+.+. |.++++.||+||++.........  .....+++|.|
T Consensus       246 -----~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        246 -----FDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             -----cCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                 000111        389999999999999988877764 89999999999998755432211  12244789999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEE
Q 007047          442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (620)
Q Consensus       442 ~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~  520 (620)
                      +|+++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||+||+|+
T Consensus       312 ~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~  388 (488)
T PRK09088        312 TPTVQTRVVD-DQGN--DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI  388 (488)
T ss_pred             CCCcEEEEEC-CCCC--CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            9999999998 6554  34567899999999999999999999999888 689999999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHH
Q 007047          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (620)
Q Consensus       521 ~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  597 (620)
                      + +|++|+|.+||++|.+||.|.+++|++.+++   +..+++|+++++.-                ....++.+++...+
T Consensus       389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------------~~~~~l~~~~~~~l  451 (488)
T PRK09088        389 S-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP----------------LDLERIRSHLSTRL  451 (488)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC----------------CCHHHHHHHHHhhC
Confidence            6 8999999999999999999999999997753   46778887653210                00124455555555


Q ss_pred             HHHHHHCCCccCCccc
Q 007047          598 KNAAERNKVIFANWDT  613 (620)
Q Consensus       598 ~~~~~~~~~~~~~~~~  613 (620)
                      .++..|.++.+++-+|
T Consensus       452 ~~~~~p~~i~~~~~iP  467 (488)
T PRK09088        452 AKYKVPKHLRLVDALP  467 (488)
T ss_pred             cCCCCCCEEEEcccCC
Confidence            5555555555555444

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.9e-57  Score=592.32  Aligned_cols=469  Identities=19%  Similarity=0.238  Sum_probs=381.5

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|
T Consensus      2001 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316       2001 RGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3458999999999999999999875   4      369999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|++|.++.+++.++++++++++++++......+...     .... .+.+...                 
T Consensus      2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~----------------- 2128 (5163)
T PRK12316       2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD----------------- 2128 (5163)
T ss_pred             HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch-----------------
Confidence            9999999999999999999999999999999999988765433110     0111 1111110                 


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                       .++...  ..........++++++++|||||||.||||+++|+++.+.+......+     +++++|+++.+.|++|..
T Consensus      2129 -~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 2200 (5163)
T PRK12316       2129 -AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDG 2200 (5163)
T ss_pred             -hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHH
Confidence             000000  011122345789999999999999999999999999999998877766     788999999999999998


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      ++..++.+|+.|+++++.+.   ++..+.+.++++++|+++.+|+++..+.+......                      
T Consensus      2201 ~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------------- 2258 (5163)
T PRK12316       2201 AHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG---------------------- 2258 (5163)
T ss_pred             HHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc----------------------
Confidence            88888899999999977653   78899999999999999999999998865321100                      


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCcc--
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC--  433 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~--  433 (620)
                                              ...++|.+++|||++++++.+.|.+.+ +..+++.||+||++..++........  
T Consensus      2259 ------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 2314 (5163)
T PRK12316       2259 ------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC 2314 (5163)
T ss_pred             ------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeeccccccc
Confidence                                    003899999999999999999998766 68899999999998876654322211  


Q ss_pred             --ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc--------CCcccccceEEE
Q 007047          434 --MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (620)
Q Consensus       434 --~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~--------dgw~~TGDl~~~  503 (620)
                        ...++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.        ++||+|||+|++
T Consensus      2315 ~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~ 2391 (5163)
T PRK12316       2315 GAAYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391 (5163)
T ss_pred             CCCcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEE
Confidence              125799999999999998 6554  556678999999999999999999999999982        259999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcChHHHHHHHHHCCCCCCHH
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~  581 (620)
                      ++||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++  .+.++|+|++.++..              
T Consensus      2392 ~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~-------------- 2456 (5163)
T PRK12316       2392 RADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAE-------------- 2456 (5163)
T ss_pred             cCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCc--------------
Confidence            999999999999999998 699999999999999999999999997543  358999999864310              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       582 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                        ....++++++...++.++.|..+..++-.|.
T Consensus      2457 --~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~ 2487 (5163)
T PRK12316       2457 --DLLAELRAWLAARLPAYMVPAHWVVLERLPL 2487 (5163)
T ss_pred             --cCHHHHHHHHHhhCchhcCcceEeeecccCC
Confidence              0112566666666777777766666655543

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-57  Score=501.22  Aligned_cols=460  Identities=19%  Similarity=0.248  Sum_probs=352.8

Q ss_pred             CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      .+....++.++|.++++++|+++|+++.   +      +.+||+||.++++++|..|.+.|+++||+|+++++|++++++
T Consensus        32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~  102 (600)
T PRK08279         32 TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA  102 (600)
T ss_pred             CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence            4456689999999999999999999875   3      469999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... .....++..++....          .
T Consensus       103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~  171 (600)
T PRK08279        103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------D  171 (600)
T ss_pred             HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------c
Confidence            99999999999999999999999999999999999999987766553322211 122233333221100          0


Q ss_pred             eeeHHHHHhcCccC----cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 007047          197 PYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (620)
Q Consensus       197 ~~~~~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (620)
                      ...|.++.......    ........++++++++|||||||.||||++||+++..++......+     ++.++|++++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~  246 (600)
T PRK08279        172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC  246 (600)
T ss_pred             cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence            11233332211111    1122334678999999999999999999999999999988876665     78899999999


Q ss_pred             cChhHHHHHHHH-HHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007047          273 LPLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (620)
Q Consensus       273 ~pl~h~~g~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (620)
                      +|++|.+++... +.++..|+++++.+. ++..+++.++++++|++.++|++++.+.+......                
T Consensus       247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~----------------  310 (600)
T PRK08279        247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT----------------  310 (600)
T ss_pred             cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc----------------
Confidence            999999998754 456888999888776 88999999999999999999999988764211000                


Q ss_pred             HHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCC-eeEeecCCCCCCCceeeccC
Q 007047          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFP  429 (620)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~  429 (620)
                                        .           ...++|.+  +|+.+++++.++|.+.++. .+++.||+||++..++..  
T Consensus       311 ------------------~-----------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--  357 (600)
T PRK08279        311 ------------------D-----------RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV--  357 (600)
T ss_pred             ------------------c-----------cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc--
Confidence                              0           00266654  4778999999999988875 599999999998643322  


Q ss_pred             CCccccCccccCcc----CeeEE---------EeecCCCCCCCCCCCCCceEE--EecCCcccccCCChhhhhccc----
Q 007047          430 DEMCMVGTAGPVSV----YSELR---------LEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI----  490 (620)
Q Consensus       430 ~~~~~~~~~G~~~~----~~~i~---------i~~~~~~~~~~~~~g~~Gei~--v~g~~v~~gy~~~~~~t~~~~----  490 (620)
                        ....+++|.+.+    +..+.         +.+ .++....++.|+.|||+  +.|+.++.|| ++++.|.+.|    
T Consensus       358 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~  433 (600)
T PRK08279        358 --FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV  433 (600)
T ss_pred             --CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence              122356776555    33322         223 23333456678899998  7899999999 8898888775    


Q ss_pred             ---cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC----ceEEEEEEcC
Q 007047          491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPC  563 (620)
Q Consensus       491 ---~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~vv~~  563 (620)
                         .++||+|||+|++++||++++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.    ...+++++..
T Consensus       434 ~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~  512 (600)
T PRK08279        434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLA  512 (600)
T ss_pred             cCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEec
Confidence               2579999999999999999999999999997 7999999999999999999999999886532    3344444432


Q ss_pred             ------hHHHHHHHHHCC
Q 007047          564 ------EEDTKKWAYSNG  575 (620)
Q Consensus       564 ------~~~~~~~~~~~~  575 (620)
                            .+++.++++++.
T Consensus       513 ~~~~~~~~~l~~~l~~~L  530 (600)
T PRK08279        513 DGAEFDLAALAAHLYERL  530 (600)
T ss_pred             CCccCCHHHHHHHHHhhC
Confidence                  245555555544

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-57  Score=475.87  Aligned_cols=502  Identities=20%  Similarity=0.220  Sum_probs=400.9

Q ss_pred             CCCCCcccHHHHHH-HHHHh-CCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHh
Q 007047           36 SVDSDLNTAWDIFS-MSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (620)
Q Consensus        36 ~~~~~~~ti~~~l~-~~a~~-~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e  113 (620)
                      +.+..+.++...+. ++.+. .+|.+++++.   +...+....+||.|+.+.+.++|..|.+.|+++||+|++++|+.++
T Consensus        57 w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e  133 (626)
T KOG1175|consen   57 WFPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPE  133 (626)
T ss_pred             ccccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChH
Confidence            45555556555544 44333 4899999987   4444444459999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhccc---------cc---ccccCccEEEEecC
Q 007047          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP---------DC---RSAQRLRVMVCFTS  181 (620)
Q Consensus       114 ~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~---~~~~~~~~vi~~~~  181 (620)
                      +++++|||.++|++.+++-...+..++...+.+++++++|+.+.........         ..   .........+....
T Consensus       134 ~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~  213 (626)
T KOG1175|consen  134 AVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSR  213 (626)
T ss_pred             HHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEec
Confidence            9999999999999999999999999999999999999999987543221110         00   00000011111111


Q ss_pred             CcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHh-hhhhhhccccc
Q 007047          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFE  260 (620)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~~~~  260 (620)
                      .            .....|++++...... ........+|+.+|+|||||||.||++..++...+... .....++    
T Consensus       214 ~------------~~d~~~~~~~~~a~~~-~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~----  276 (626)
T KOG1175|consen  214 R------------NRDLFWSLELKKASPE-HPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF----  276 (626)
T ss_pred             c------------cccccHHHHhhhcCCC-CCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec----
Confidence            0            1134566665554332 33677889999999999999999999999976555444 4444455    


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHh
Q 007047          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (620)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  336 (620)
                       ++.++|++++...+.|+.+... .+.+|+.|+++++.+.   ++..+++.+.++++|+++..|+.++.+.+........
T Consensus       277 -d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~  355 (626)
T KOG1175|consen  277 -DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS  355 (626)
T ss_pred             -cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc
Confidence             8899999999999999999876 5669999999999875   7899999999999999999999999876533222111


Q ss_pred             hchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCC-eeEeec
Q 007047          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGY  415 (620)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~Y  415 (620)
                                                         .++        ++||.+.++||++.++...++.+.++. +|++.|
T Consensus       356 -----------------------------------~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~  392 (626)
T KOG1175|consen  356 -----------------------------------YSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETY  392 (626)
T ss_pred             -----------------------------------ccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhce
Confidence                                               111        289999999999999999999999987 699999


Q ss_pred             CCCCCCCceeeccCCC-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--C-CcccccCCChhhhhcc-c
Q 007047          416 GLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRES-I  490 (620)
Q Consensus       416 G~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~-~v~~gy~~~~~~t~~~-~  490 (620)
                      |+||+|+.++.+.... +.++++.+.|++|+.+.|+| ++++..+... +.|+|+++.  | +.+++||+|++.-..+ |
T Consensus       393 ~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf  470 (626)
T KOG1175|consen  393 GQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYF  470 (626)
T ss_pred             eeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhc
Confidence            9999999999888877 77779999999999999999 6776665544 799999998  3 7899999999944443 3


Q ss_pred             --cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChH
Q 007047          491 --IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  565 (620)
Q Consensus       491 --~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~  565 (620)
                        ..|+|+|||.+++|+||+++++||.||+||+ +|.++++.|||+++.+||.|.|++|||.+|+   +.+.|||+++++
T Consensus       471 ~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g  549 (626)
T KOG1175|consen  471 KKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG  549 (626)
T ss_pred             ccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC
Confidence              3899999999999999999999999999997 7999999999999999999999999998875   699999999765


Q ss_pred             HHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccccc
Q 007047          566 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFS  617 (620)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  617 (620)
                      +-..           .++  ..++++.+++.|.+++.|++|.+++-+|++++
T Consensus       550 ~~~~-----------~~L--~kel~~~VR~~igp~a~P~~I~~v~~LPkTrS  588 (626)
T KOG1175|consen  550 SHDP-----------EQL--TKELVKHVRSVIGPYAVPRLIVFVPGLPKTRS  588 (626)
T ss_pred             CCCh-----------HHH--HHHHHHHHHhhcCcccccceeEecCCCCcccc
Confidence            1110           011  23888999999999999999999999999875

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.8e-57  Score=581.76  Aligned_cols=478  Identities=20%  Similarity=0.212  Sum_probs=385.8

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|++++++++++++++||
T Consensus      1573 ~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~la 1643 (3956)
T PRK12467       1573 ARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLA 1643 (3956)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHH
Confidence            468999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|++|.++.+++.++++++++++++++......+...     ... .++.++...                 
T Consensus      1644 vlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~----------------- 1700 (3956)
T PRK12467       1644 ILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED----------------- 1700 (3956)
T ss_pred             hhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc-----------------
Confidence            999999999999999999999999999999999987665433110     111 222222110                 


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                       +++... ..........++++|+++|||||||.||||+++|+++.+.+......+     +++.+|+++++.|++|..+
T Consensus      1701 -~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 1773 (3956)
T PRK12467       1701 -DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVS 1773 (3956)
T ss_pred             -chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHH
Confidence             011111 111222345789999999999999999999999999999988776666     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +..++.++..|+++++.+.    ++..+.+.++++++|++.++|++++.+.+.... ..                     
T Consensus      1774 ~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~--------------------- 1831 (3956)
T PRK12467       1774 VWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-VE--------------------- 1831 (3956)
T ss_pred             HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-cc---------------------
Confidence            8878889999999999863    789999999999999999999999988652100 00                     


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCC----C
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----E  431 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~  431 (620)
                                      .+        +++|.+++|||++++++.+.|.+.+ +..++|.||+||+++.++.....    .
T Consensus      1832 ----------------~~--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~ 1887 (3956)
T PRK12467       1832 ----------------HP--------LSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887 (3956)
T ss_pred             ----------------cC--------CCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccc
Confidence                            01        3899999999999999999887766 57899999999999877654322    1


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc--------CCcccccceEEE
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~--------dgw~~TGDl~~~  503 (620)
                      .....++|+|++++.++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.        ++||+|||+|++
T Consensus      1888 ~~~~~~iG~p~~~~~~~vld-~~~~--~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1964 (3956)
T PRK12467       1888 GRDSVPIGQPIANLSTYILD-ASLN--PVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964 (3956)
T ss_pred             cCCCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEE
Confidence            12236899999999999998 5554  556678999999999999999999999999982        249999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcChHHHHHHHHHCCCCCCHH
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~  581 (620)
                      ++||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++  .+.++|+|++.++.......        .
T Consensus      1965 ~~dG~l~~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~~~~~--------~ 2035 (3956)
T PRK12467       1965 RADGVIEYLGRIDHQVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLVDDDE--------A 2035 (3956)
T ss_pred             CCCCCEEEecccCceEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccccccc--------c
Confidence            999999999999999998 699999999999999999999999998653  35899999986432110000        0


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       582 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ......++++++...++.++.|+.+.+++-.|.+
T Consensus      2036 ~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t 2069 (3956)
T PRK12467       2036 QVALRAILKNHLKASLPEYMVPAHLVFLARMPLT 2069 (3956)
T ss_pred             ccccHHHHHHHHHhhCchhhCchhhhhhhcCCCC
Confidence            0001136777777778888888777776655543

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-56  Score=486.57  Aligned_cols=472  Identities=19%  Similarity=0.197  Sum_probs=363.9

Q ss_pred             HHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEE
Q 007047           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (620)
Q Consensus        50 ~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~v  129 (620)
                      .+++++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+.+||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467889999999864   321    5799999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCcc
Q 007047          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (620)
Q Consensus       130 pi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  209 (620)
                      |+++.++.+++.+++++++++.+++++........ ...   .....+.+.....           ...++++...... 
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VGA---DLPLRLSFGGEID-----------GFGSFEAALAGAG-  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hhh---ccceEEEecCccc-----------ccccHHHHhcccC-
Confidence            99999999999999999999999998754322111 100   1111122211100           1123333322110 


Q ss_pred             CcccCCCCCCCCeEEEEecCCCCCCcceeee--ccHHHHHHhhh----hhhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 007047          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSG----VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (620)
Q Consensus       210 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~--th~~l~~~~~~----~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  283 (620)
                          .......++++++|||||||.||+|++  +|.++......    ....+     .+..+|++++.+|++|.+++..
T Consensus       142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence                001122357999999999999999996  45555432211    11122     6778999999999999988765


Q ss_pred             HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCC
Q 007047          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (620)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (620)
                      ....+..|+++++.+. ++..+++.++++++|++.++|+++..+.+.....                             
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------  263 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADV-----------------------------  263 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchh-----------------------------
Confidence            5556678999988775 8999999999999999999999998876421110                             


Q ss_pred             CCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCc
Q 007047          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (620)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~  442 (620)
                            ....++        +++|.+++||+++++++.+.+.+.++..+++.||+||++.++...........+++|.|+
T Consensus       264 ------~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  329 (501)
T PRK13390        264 ------RTRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV  329 (501)
T ss_pred             ------cccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence                  000111        278999999999999999999988899999999999998765543322223347899999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc---CCcccccceEEEccCCcEEEeecccCeE
Q 007047          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (620)
Q Consensus       443 ~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~---dgw~~TGDl~~~~~dG~l~~~GR~~d~i  519 (620)
                      ++ .++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.   +||++|||+|++|+||++++.||.||+|
T Consensus       330 ~g-~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i  405 (501)
T PRK13390        330 LG-DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMI  405 (501)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccce
Confidence            99 689988 5554  456778999999999999999999999998873   6899999999999999999999999999


Q ss_pred             EcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHH-HHHHHHHCCCCCCHHHHhccHHHHHHHHH
Q 007047          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED-TKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (620)
Q Consensus       520 ~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (620)
                      |+ +|++|+|.+||++|.+||.|.+|+|++.++.   +.+++++++.++. ..+            +  ...++.+++..
T Consensus       406 ~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~------------~--~~~~l~~~~~~  470 (501)
T PRK13390        406 IS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSD------------E--LARELIDYTRS  470 (501)
T ss_pred             eE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcch------------h--hHHHHHHHHHH
Confidence            96 7999999999999999999999999997764   4788888875321 000            0  01267788888


Q ss_pred             HHHHHHHHCCCccCCccccc
Q 007047          596 ELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       596 ~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .++.++.|.++.+++-+|++
T Consensus       471 ~l~~~~~P~~~~~~~~iP~t  490 (501)
T PRK13390        471 RIAHYKAPRSVEFVDELPRT  490 (501)
T ss_pred             hcccCCCCcEEEEeccCCCC
Confidence            88888889999888877755

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=2.1e-56  Score=486.02  Aligned_cols=469  Identities=17%  Similarity=0.201  Sum_probs=374.8

Q ss_pred             cHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 007047           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (620)
Q Consensus        43 ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  122 (620)
                      ++.+.|.+.++.+|+++|+...   +      +.+||+||.+++.++|..|.+.|+++||+|+++++|+.++++++|||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            4788999999999999999754   3      479999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHH
Q 007047          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (620)
Q Consensus       123 ~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  202 (620)
                      ++|++++|+++.++.+++.++++..+++.++++........        ... ++.+..                  ..+
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------GTQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc--------CCc-eEEchH------------------hhh
Confidence            99999999999999999999999999999999876543221        111 121111                  011


Q ss_pred             HHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 007047          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (620)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  282 (620)
                      +..... .........+++.++++|||||||.||+|+++|.++...+......+     ....++++++.+|++|..++.
T Consensus       125 ~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            111111 11112234678999999999999999999999999998887766555     678899999999999999888


Q ss_pred             HHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       283 ~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ..+.++..|+++++.+.    ++..+++.+.++++|.+.++|.++..++.....                          
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------  252 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------  252 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence            78889999999998764    788999999999999999999998876532100                          


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCC----Ccc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMC  433 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~  433 (620)
                                 ....+        ++++.++++|++++.++.+.+.+.+ +..+++.||+||++..++.....    ...
T Consensus       253 -----------~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       253 -----------NQENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             -----------ccccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence                       00011        3889999999999999999998887 78999999999998654433211    112


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc----CCcccccceEEEccCCcE
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVV  509 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~----dgw~~TGDl~~~~~dG~l  509 (620)
                      ...++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.    ++||+|||+|++|++ ++
T Consensus       314 ~~~~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l  389 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL  389 (502)
T ss_pred             CccccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence            225789999999999999 6554  445678999999999999999999999988772    359999999999866 99


Q ss_pred             EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecC--CC--ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhc
Q 007047          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (620)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~--~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  585 (620)
                      ++.||.+|+|++ +|++|+|.+||+.|.+||.|.+|+|++..  +.  +.++++|+++++...+..       .     .
T Consensus       390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~-----~  456 (502)
T TIGR01734       390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEF-------Q-----L  456 (502)
T ss_pred             EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccch-------h-----h
Confidence            999999999997 89999999999999999999999999842  22  488899988653211110       0     0


Q ss_pred             cHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          586 LVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       586 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ..++++++.+.++.+..|.++..++-.|++
T Consensus       457 ~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t  486 (502)
T TIGR01734       457 TKAIKKELKKSLPAYMIPRKFIYRDQLPLT  486 (502)
T ss_pred             HHHHHHHHhhhChhhcCCcEEEEccccCCC
Confidence            136778888888888888888777766644

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=7.7e-57  Score=586.61  Aligned_cols=445  Identities=20%  Similarity=0.224  Sum_probs=371.7

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++||
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|++|.++.+++.+++++++++++|++......+...     ... .++.++....                
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~~----------------  638 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA-----AGV-QVLDLDRPAA----------------  638 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc-----cCc-eEEEecCcch----------------
Confidence            999999999999999999999999999999999987664432110     011 2223221110                


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                        ..... ..........++++|+++|||||||.||||+++|+++++.+......+     +++.+|++++.+|++|..+
T Consensus       639 --~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~  710 (5163)
T PRK12316        639 --WLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVS  710 (5163)
T ss_pred             --hhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHH
Confidence              00101 111222345789999999999999999999999999999988877766     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +...+.+++.|+++++.+.    ++..+.+.++++++|++.++|++++.+.+....  .                     
T Consensus       711 ~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~---------------------  767 (5163)
T PRK12316        711 VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV--A---------------------  767 (5163)
T ss_pred             HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc--c---------------------
Confidence            8888899999999999852    889999999999999999999999988642100  0                     


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccC-CCccc
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM  434 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~~  434 (620)
                                      .+        +++|.+++||+++++++.+.|.+.+ +.+++|.||+||++..++.... .....
T Consensus       768 ----------------~~--------~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  823 (5163)
T PRK12316        768 ----------------SC--------TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGD  823 (5163)
T ss_pred             ----------------cC--------CCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCC
Confidence                            01        3899999999999999999886655 7899999999999865544332 22233


Q ss_pred             cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-------CCcccccceEEEccCC
Q 007047          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (620)
Q Consensus       435 ~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-------dgw~~TGDl~~~~~dG  507 (620)
                      ..++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.       ++||+|||+|++++||
T Consensus       824 ~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG  900 (5163)
T PRK12316        824 SVPIGRPIANLACYILD-ANLE--PVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADG  900 (5163)
T ss_pred             CCCCccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCC
Confidence            46899999999999999 6654  556678999999999999999999999999882       3499999999999999


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcCh------HHHHHHHHHCCC
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE------EDTKKWAYSNGH  576 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~------~~~~~~~~~~~~  576 (620)
                      +|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ .+.++|+|++.+      ++++++++++..
T Consensus       901 ~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp  973 (5163)
T PRK12316        901 VIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGGDWREALKAHLAASLP  973 (5163)
T ss_pred             CEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCCCCHHHHHHHHHhhCC
Confidence            99999999999998 79999999999999999999999999987 778999999854      456666665544

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=8.8e-57  Score=582.28  Aligned_cols=476  Identities=17%  Similarity=0.162  Sum_probs=385.3

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.++++++||++|+++.   ++      .+||+||.++++++|+.|.+.|+++|++|+|++++++++++++|
T Consensus      3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691       3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred             cccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3469999999999999999999976   53      59999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccc-cCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      |++++|+++||++|.++.+++.++++++++++++++............... .....++..+                  
T Consensus      3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 3850 (4334)
T PRK05691       3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE------------------ 3850 (4334)
T ss_pred             HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec------------------
Confidence            999999999999999999999999999999999998865432211111000 0111111111                  


Q ss_pred             eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                         +................|+++||++|||||||.||||+++|+++++.+......+     +++++|+++...++.+.
T Consensus      3851 ---~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691       3851 ---EVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred             ---ccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence               1111010111222345789999999999999999999999999999998877766     88999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      .+....+.++..|+++++++.    ++..+.+.++++++|++..+|+++..++......                     
T Consensus      3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~~--------------------- 3981 (4334)
T PRK05691       3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQA--------------------- 3981 (4334)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcccc---------------------
Confidence            998888999999999999864    6889999999999999999999998875321000                     


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCc-
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-  432 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~-  432 (620)
                                         +        ++||.+++|||++++++.+.|.+.+ +++++|.||+|||+..++....... 
T Consensus      3982 -------------------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691       3982 -------------------L--------DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred             -------------------C--------CCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence                               0        3899999999999999999887765 7899999999999987765543221 


Q ss_pred             --cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc--------CCcccccceEE
Q 007047          433 --CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQ  502 (620)
Q Consensus       433 --~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~--------dgw~~TGDl~~  502 (620)
                        ....++|+|++++.+.|+| +++.  +++.|..|||+|+|+.++.||+++|+.|+++|.        ++||+|||+|+
T Consensus      4035 ~~~~~~~iG~p~~~~~~~v~d-~~~~--~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4035 TRGSYLPIGSPTDNNRLYLLD-EALE--LVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             ccCCcCCCCCccCCCEEEEEC-CCCC--CCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCccee
Confidence              1224699999999999998 5554  455568999999999999999999999999992        46999999999


Q ss_pred             EccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecC--CCceEEEEEEcChHHHHHHHHHCCCCCCH
Q 007047          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LKSMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (620)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~--~~~~~~a~vv~~~~~~~~~~~~~~~~~~~  580 (620)
                      +++||.|+|+||+||+||+ +|++|++.|||++|.++|+|.+|+|+...  ..+.++|++++.......-          
T Consensus      4112 ~~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~---------- 4180 (4334)
T PRK05691       4112 RRSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQG---------- 4180 (4334)
T ss_pred             ecCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccch----------
Confidence            9999999999999999998 69999999999999999999999887532  2468999999864321000          


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          581 LELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       581 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                       +  ...+++.++.+.++.++.|+.+..++-.|.+
T Consensus      4181 -~--~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t 4212 (4334)
T PRK05691       4181 -A--LLERIKQRLRAELPDYMVPLHWLWLDRLPLN 4212 (4334)
T ss_pred             -H--HHHHHHHHHHhhCChhhcCcceeecccCCCC
Confidence             0  0125677778888888888887777666543

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-55  Score=485.26  Aligned_cols=456  Identities=25%  Similarity=0.302  Sum_probs=347.0

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +++.+.|.+.++.+|+++|+.+.   +      ..+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            67889999999999999999764   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++..+.+++..+++.++++.++++.+....+.+... ..+.. ..+.+......   ..........++.
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDVDDPE---YPGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEecCccc---cccCCCcccccHH
Confidence            9999999999999999999999999999999999887665433221 11111 12222211100   0000112334566


Q ss_pred             HHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 007047          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (620)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (620)
                      +++...............+++++++|||||||.||||+++|+++...+......+     .+..++++++.+|++|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            6654332211111223456899999999999999999999998876665443333     56778899999999999988


Q ss_pred             HHHHH-HhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc
Q 007047          282 VIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (620)
Q Consensus       282 ~~~~~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (620)
                      ...+. .+..|.++++...++..+++.++++++|++.++|+++..+++......                          
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  292 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR--------------------------  292 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc--------------------------
Confidence            65444 444444444433499999999999999999999999998865211100                          


Q ss_pred             CCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC---------
Q 007047          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  431 (620)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---------  431 (620)
                                 ..+        .+.+.++++|+.+++++.+++++ ++.++++.||+||+++.++.+....         
T Consensus       293 -----------~~~--------~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        293 -----------AGI--------DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             -----------cCC--------ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccc
Confidence                       000        14456678999999999998887 4899999999999976555432211         


Q ss_pred             -ccccCccccCcc-CeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcE
Q 007047          432 -MCMVGTAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (620)
Q Consensus       432 -~~~~~~~G~~~~-~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l  509 (620)
                       .....+.|.+++ +..++++|.+++...+.+.++.|||+|+|+.++.||+++++.+...|.+|||+|||+|++|+||++
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l  432 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYI  432 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccE
Confidence             011245566655 345778873333333322234799999999999999999999999999999999999999999999


Q ss_pred             EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.+++++++.
T Consensus       433 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~  488 (545)
T PRK08162        433 KIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELK  488 (545)
T ss_pred             EEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeC
Confidence            999999999996 8999999999999999999999999986643   4788888865

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-56  Score=479.03  Aligned_cols=441  Identities=26%  Similarity=0.291  Sum_probs=355.8

Q ss_pred             HHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEec
Q 007047           52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL  131 (620)
Q Consensus        52 a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi  131 (620)
                      ++..++++|+++.   +      +++||+||.++++++|..|.     ++|+|+++++|++++++++|||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            3456789998764   3      57999999999999999996     57999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCc
Q 007047          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  211 (620)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  211 (620)
                      ++..+.+++.++++++++++++++.+...          ..+..+.....               ..++           
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~-----------  119 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSW-----------  119 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------cccc-----------
Confidence            99999999999999999999999763110          01111000000               0000           


Q ss_pred             ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhc
Q 007047          212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRR  290 (620)
Q Consensus       212 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~  290 (620)
                      .......++|+++++|||||||.||+|+++|.++...+......+     ++..+|++++.+|++|..|+.. .+.++..
T Consensus       120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  194 (471)
T PRK07787        120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI  194 (471)
T ss_pred             ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence            011124578999999999999999999999999999887766655     6788899999999999999875 6668999


Q ss_pred             CcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHH
Q 007047          291 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (620)
Q Consensus       291 G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (620)
                      |+++++.+. ++..+++.++ +++|++.++|+++..+.+.....                                    
T Consensus       195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~------------------------------------  237 (471)
T PRK07787        195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA------------------------------------  237 (471)
T ss_pred             CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc------------------------------------
Confidence            999988765 8999999999 99999999999998876421000                                    


Q ss_pred             HHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEE
Q 007047          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (620)
Q Consensus       370 ~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i  449 (620)
                        ..+        +++|.+++||+++++++.++|.+.++.++++.||+||++...+.... ....++++|.|+++++++|
T Consensus       238 --~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i  306 (471)
T PRK07787        238 --RAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRL  306 (471)
T ss_pred             --ccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEE
Confidence              001        38999999999999999999999889999999999999876544432 2333478999999999999


Q ss_pred             eecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecc-cCeEEcCCceee
Q 007047          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYV  527 (620)
Q Consensus       450 ~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~-~d~i~~~~G~~v  527 (620)
                      +| +++...+.+.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||+ ||+++. +|++|
T Consensus       307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v  384 (471)
T PRK07787        307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI  384 (471)
T ss_pred             EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence            99 66655443223479999999999999999999999998 5899999999999999999999996 899996 89999


Q ss_pred             ccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHC
Q 007047          528 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  604 (620)
Q Consensus       528 ~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  604 (620)
                      +|.+||++|.++|.|.+++|++.++.   +.++|+|++.++.                  ...++.+++.+.++++..|.
T Consensus       385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~~~l~~~l~~~l~~~~~P~  446 (471)
T PRK07787        385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------AADELIDFVAQQLSVHKRPR  446 (471)
T ss_pred             CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------CHHHHHHHHHhhcccccCCc
Confidence            99999999999999999999997754   4888888873210                  11256667777777777777


Q ss_pred             CCccCCccccc
Q 007047          605 KVIFANWDTGC  615 (620)
Q Consensus       605 ~~~~~~~~~~~  615 (620)
                      ++.+++-+|++
T Consensus       447 ~i~~~~~iP~~  457 (471)
T PRK07787        447 EVRFVDALPRN  457 (471)
T ss_pred             EEEEeccCCCC
Confidence            77776666643

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-55  Score=485.40  Aligned_cols=478  Identities=21%  Similarity=0.252  Sum_probs=367.5

Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH
Q 007047           35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (620)
Q Consensus        35 ~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~  114 (620)
                      ++.+....++.++|.++++.+||++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++
T Consensus        26 ~~~~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~   96 (567)
T PRK06178         26 PEYPHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQF   96 (567)
T ss_pred             CCCCcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHH
Confidence            344555578999999999999999999865   3      4699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHH--HHHhh
Q 007047          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK--EMAVQ  192 (620)
Q Consensus       115 ~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~~  192 (620)
                      +++++||+++|++++|++|..+.+++.++++.++++++++++.....+.+.....  ....++..........  .....
T Consensus        97 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~  174 (567)
T PRK06178         97 HIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLP  174 (567)
T ss_pred             HHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccc
Confidence            9999999999999999999999999999999999999999988766554332211  2333333221110000  00000


Q ss_pred             -----cCCceeeHHHHHhcCcc--CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCC
Q 007047          193 -----TGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV  265 (620)
Q Consensus       193 -----~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~  265 (620)
                           .......+.++......  .........++++++++|||||||.||+|++||.+++..........    .....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~  250 (567)
T PRK06178        175 DSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGE  250 (567)
T ss_pred             cccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCC
Confidence                 00001112222221111  11122345689999999999999999999999999987765433221    25678


Q ss_pred             CcEEEEecChhHHHHHH-HHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007047          266 DDVYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (620)
Q Consensus       266 ~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (620)
                      +|++++.+|++|.+|+. .++.++..|+++++.+. ++..++..++++++|.+.++|..+..+.+...            
T Consensus       251 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~------------  318 (567)
T PRK06178        251 DSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR------------  318 (567)
T ss_pred             CcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC------------
Confidence            99999999999999986 46678999999999886 89999999999999999999998887653110            


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEE--eecCCCCHHHHHHHHHhcCCeeEe-ecCCCCC
Q 007047          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTET  420 (620)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~--~gG~~l~~~~~~~~~~~~~~~v~~-~YG~TE~  420 (620)
                                               ....++        .+++.+.  ++++.+++++.+.+++.+|..++. .||+||+
T Consensus       319 -------------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~  365 (567)
T PRK06178        319 -------------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTET  365 (567)
T ss_pred             -------------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccc
Confidence                                     000111        1556544  446899999999999988877665 7999999


Q ss_pred             CCceeeccCCC------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCc
Q 007047          421 CGPTTVCFPDE------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW  494 (620)
Q Consensus       421 ~~~~~~~~~~~------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw  494 (620)
                      +..++......      ...++++|.|+||++++++|.+++  .+++.|+.|||+++|++++.||+++++.+.+.|.|||
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~--~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~  443 (567)
T PRK06178        366 HTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG--ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGW  443 (567)
T ss_pred             cccceeccccccCccccccCCcccccccCCcEEEEEcCCCC--CcCCCCCceEEEEECCcccccccCChhhhhhcccCCc
Confidence            87654432111      123367899999999999983333  4455678999999999999999999999999999999


Q ss_pred             ccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hH
Q 007047          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EE  565 (620)
Q Consensus       495 ~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~  565 (620)
                      |+|||++++++||+++++||++|+|++ +|++|+|.+||+++.++|+|.+++|++.+++   +.++++|+++      .+
T Consensus       444 ~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  522 (567)
T PRK06178        444 LHTGDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAA  522 (567)
T ss_pred             eeecceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHH
Confidence            999999999999999999999999997 7999999999999999999999999987654   4788888864      34


Q ss_pred             HHHHHHHHCC
Q 007047          566 DTKKWAYSNG  575 (620)
Q Consensus       566 ~~~~~~~~~~  575 (620)
                      ++.++++++.
T Consensus       523 ~l~~~~~~~l  532 (567)
T PRK06178        523 ALQAWCRENM  532 (567)
T ss_pred             HHHHHHHhcC
Confidence            5666666544

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.8e-56  Score=486.63  Aligned_cols=473  Identities=22%  Similarity=0.292  Sum_probs=363.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      +.++.++|..+++++|+++|+++.   +      +.+||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999854   2      469999999999999999984 899999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcH-H--HH--------H
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-E--QK--------E  188 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~--~~--------~  188 (620)
                      ||+++|++++|++|..+.+++.++++.+++++++++++....+......  .....++....... .  ..        .
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence            9999999999999999999999999999999999987654433221111  11222222110000 0  00        0


Q ss_pred             ----HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCC
Q 007047          189 ----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (620)
Q Consensus       189 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (620)
                          ..........++.+................++++++++|||||||.||+|.++|.++..++......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                0000000112223333222111111223468899999999999999999999999998876543332210  0123


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHH
Q 007047          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (620)
Q Consensus       265 ~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (620)
                      ..+.++..+|++|.+++.. .+.++..|+++++...  ++..++..++++++|++.++|+++..+.+...          
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------  318 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE----------  318 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC----------
Confidence            4678889999999998764 5556888888777643  78889999999999999999999998864211          


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCC
Q 007047          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (620)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~  421 (620)
                                                 ....++        +++|.+++||+++++.+.+.|++.+|.++++.||+||++
T Consensus       319 ---------------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        319 ---------------------------FQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             ---------------------------cccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                       000111        389999999999999999999998899999999999999


Q ss_pred             CceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceE
Q 007047          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (620)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~  501 (620)
                      ..++.+........+++|.|+|+++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||++
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            887766554444457899999999999998 5554  4556689999999999999999999999998999999999999


Q ss_pred             EEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC-----hHHHHHHHHH
Q 007047          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC-----EEDTKKWAYS  573 (620)
Q Consensus       502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~-----~~~~~~~~~~  573 (620)
                      +++++|+++++||++|+|++ +|.+++|.+||++|.+||+|.+++|++.+++   +.++++++..     .+++.+++.+
T Consensus       441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~  519 (560)
T PRK08974        441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRR  519 (560)
T ss_pred             EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHh
Confidence            99999999999999999997 7999999999999999999999999987654   3566666643     2345555554


Q ss_pred             CC
Q 007047          574 NG  575 (620)
Q Consensus       574 ~~  575 (620)
                      +.
T Consensus       520 ~l  521 (560)
T PRK08974        520 HL  521 (560)
T ss_pred             hc
Confidence            43

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.9e-55  Score=478.70  Aligned_cols=469  Identities=18%  Similarity=0.192  Sum_probs=377.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ++++.++|.++++.+|+++|+...   +      +.+||.||.++++++|..|.+.|+.+||+|+++++|+.++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a   71 (503)
T PRK04813          1 IMDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG   71 (503)
T ss_pred             CchHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            467899999999999999998754   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.++++.+++++++++.......        ....                      ...+
T Consensus        72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------------------~~~~  121 (503)
T PRK04813         72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGIP----------------------VITL  121 (503)
T ss_pred             HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCCc----------------------EEeh
Confidence            999999999999999999999999999999999987641100        0110                      1112


Q ss_pred             HHHHhcC--ccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       201 ~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      +++....  ...........++++++++|||||||.||+|.++|.++...+......+     .+..+++++..+|++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~  196 (503)
T PRK04813        122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD  196 (503)
T ss_pred             HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence            2221110  0111112345678899999999999999999999999998887666555     77889999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      .+...++.++..|+++++.+.    ++..+++.++++++|++..+|+++..+.......                     
T Consensus       197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~---------------------  255 (503)
T PRK04813        197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN---------------------  255 (503)
T ss_pred             HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC---------------------
Confidence            888777888999999998874    7889999999999999999999998765321100                     


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC--
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--  431 (620)
                                      ..++        +++|.++++|+++++.+.+++.+.+ +..+++.||+||++..++......  
T Consensus       256 ----------------~~~~--------~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  311 (503)
T PRK04813        256 ----------------EEHL--------PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM  311 (503)
T ss_pred             ----------------cccC--------CCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence                            0011        3899999999999999999999988 789999999999976554432211  


Q ss_pred             --ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc--CC--cccccceEEEcc
Q 007047          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILP  505 (620)
Q Consensus       432 --~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~--dg--w~~TGDl~~~~~  505 (620)
                        .....++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.  +|  ||+|||+|++ +
T Consensus       312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~  387 (503)
T PRK04813        312 LDQYKRLPIGYAKPDSPLLIID-EEGT--KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E  387 (503)
T ss_pred             cccCCCCcccccCCCCEEEEEC-CCCC--CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence              12235789999999999998 5554  445668999999999999999999999998873  44  9999999999 8


Q ss_pred             CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHH
Q 007047          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (620)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  582 (620)
                      ||++++.||.||+|++ +|++++|.+||+.+.+||+|.+++|++.+++   +.++++++++++.....            
T Consensus       388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~------------  454 (503)
T PRK04813        388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFERE------------  454 (503)
T ss_pred             CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccccc------------
Confidence            9999999999999997 8999999999999999999999999985543   57889998865421100            


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       583 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .....++++++.+.+.++..|.++.+++-+|.+
T Consensus       455 ~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t  487 (503)
T PRK04813        455 FELTKAIKKELKERLMEYMIPRKFIYRDSLPLT  487 (503)
T ss_pred             chhHHHHHHHHHhhCccccCCeEEEEeccCCCC
Confidence            000126777777778888888888777766644

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=7.4e-56  Score=475.49  Aligned_cols=433  Identities=24%  Similarity=0.286  Sum_probs=352.3

Q ss_pred             cccHHHHH-HHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~~l-~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      |+++.+.+ .++++++|+++|+.+.   +      +.+||.||.++++++|..|.+.|+.+||+|+++++|+++++++++
T Consensus         1 ~~~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~l   71 (458)
T PRK09029          1 MMIFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYL   71 (458)
T ss_pred             CchhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            34555555 5568899999999753   2      469999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++..+.+++..+++++++++++++.+... ..        .+...                      .
T Consensus        72 a~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--------~~~~~----------------------~  120 (458)
T PRK09029         72 ALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FS--------ALTSL----------------------H  120 (458)
T ss_pred             HHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh--------hcccc----------------------c
Confidence            99999999999999999999999999999999998765422 10        00000                      0


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      +.   .   ..........++++++++|||||||.||+|++||++++..+......+     +...+|+++..+|++|.+
T Consensus       121 ~~---~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~  189 (458)
T PRK09029        121 LQ---L---VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVS  189 (458)
T ss_pred             cc---c---ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhh
Confidence            00   0   001112234688999999999999999999999999999888776655     778899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007047          280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (620)
                      ++...+.++..|+++++.+.  ..+...+  .++|.+..+|+++..+......                           
T Consensus       190 g~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------  238 (458)
T PRK09029        190 GQGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------  238 (458)
T ss_pred             hhHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc---------------------------
Confidence            98767778999999998763  5566666  3789999999999877542110                           


Q ss_pred             cCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccc
Q 007047          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (620)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G  439 (620)
                                            ..++|.+++||+++++.+.+++.+ +|.++++.||+||++...+.....  . ..++|
T Consensus       239 ----------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~~--~-~~~~G  292 (458)
T PRK09029        239 ----------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRAD--G-LAGVG  292 (458)
T ss_pred             ----------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCCC--C-CCCCC
Confidence                                  027899999999999999999886 499999999999998755443322  1 25699


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeE
Q 007047          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (620)
Q Consensus       440 ~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i  519 (620)
                      .|++++++++++              |||+|+|+.++.||+++++.+.....+|||+|||+|++| ||++++.||+||+|
T Consensus       293 ~~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i  357 (458)
T PRK09029        293 SPLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF  357 (458)
T ss_pred             CCCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccce
Confidence            999999999876              899999999999999999888766678999999999999 99999999999999


Q ss_pred             EcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHH
Q 007047          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (620)
Q Consensus       520 ~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (620)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|+++.+.                  ...++++++.++
T Consensus       358 ~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~~~l~~~~~~~  418 (458)
T PRK09029        358 FS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA------------------AVVNLAEWLQDK  418 (458)
T ss_pred             ee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc------------------CHHHHHHHHHhh
Confidence            97 7999999999999999999999999998765   4788888865210                  112566666667


Q ss_pred             HHHHHHHCCCccCCccccc
Q 007047          597 LKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       597 i~~~~~~~~~~~~~~~~~~  615 (620)
                      ++.+..|.++.+++..|++
T Consensus       419 l~~~~~P~~~~~~~~~p~t  437 (458)
T PRK09029        419 LARFQQPVAYYLLPPELKN  437 (458)
T ss_pred             chhccCCeEEEEecccccC
Confidence            7777777777777666543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=6.5e-56  Score=472.66  Aligned_cols=372  Identities=20%  Similarity=0.233  Sum_probs=305.3

Q ss_pred             eeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEc
Q 007047           77 KTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ  155 (620)
Q Consensus        77 ~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~  155 (620)
                      +.|+||.++++++|++|.+.|+ ++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             chhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCc
Q 007047          156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDP  235 (620)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P  235 (620)
                      .+.....                ....                .         .   ......++++++++|||||||.|
T Consensus       100 ~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~P  135 (452)
T PRK07445        100 DQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQI  135 (452)
T ss_pred             Ccccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCCC
Confidence            6532100                0000                0         0   00123568999999999999999


Q ss_pred             ceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCc
Q 007047          236 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (620)
Q Consensus       236 K~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (620)
                      |||++||+++...+......+     ++.. ++.++.+|++|.+|+...+.++..|+++++.+. ..........++++|
T Consensus       136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t  209 (452)
T PRK07445        136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF  209 (452)
T ss_pred             cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence            999999999988887766554     4444 457889999999998877888999999998764 223323444578899


Q ss_pred             EEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCC
Q 007047          315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP  394 (620)
Q Consensus       315 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~  394 (620)
                      ++.++|++++.+.+...                                        ..+        +++|.+++||++
T Consensus       210 ~~~~vP~~l~~l~~~~~----------------------------------------~~l--------~~l~~i~~gG~~  241 (452)
T PRK07445        210 FLSLVPTQLQRLLQLRP----------------------------------------QWL--------AQFRTILLGGAP  241 (452)
T ss_pred             EEEehHHHHHHHHhhCh----------------------------------------hhh--------hcceEEEECCcc
Confidence            99999999998764100                                        001        389999999999


Q ss_pred             CCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC
Q 007047          395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (620)
Q Consensus       395 l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~  473 (620)
                      +++++.+.+++ +++++++.||+||++..++...+.. ....+++|+|+|+++++|+           .|+.|||+|+|+
T Consensus       242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~-----------~g~~Gel~v~g~  309 (452)
T PRK07445        242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP-----------ANQTGNITIQAQ  309 (452)
T ss_pred             CCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc-----------CCCcceEEEeCC
Confidence            99999988876 4899999999999986554433322 2234789999999999987           235899999999


Q ss_pred             CcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC
Q 007047          474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK  553 (620)
Q Consensus       474 ~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~  553 (620)
                      .++.||++++..     .+|||+|||+|++|+||++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus       310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~  383 (452)
T PRK07445        310 SLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDP  383 (452)
T ss_pred             ccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCc
Confidence            999999986431     3799999999999999999999999999996 8999999999999999999999999998764


Q ss_pred             ---ceEEEEEEcCh
Q 007047          554 ---SMLVAVVVPCE  564 (620)
Q Consensus       554 ---~~~~a~vv~~~  564 (620)
                         +.++|++++.+
T Consensus       384 ~~g~~~~a~vv~~~  397 (452)
T PRK07445        384 HWGEVVTAIYVPKD  397 (452)
T ss_pred             CCCcEEEEEEEeCC
Confidence               47888888753

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=3.6e-55  Score=520.02  Aligned_cols=457  Identities=19%  Similarity=0.194  Sum_probs=356.4

Q ss_pred             CCcccHHHHHHHHHHhCC-CCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~p-d~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      +...++.+.|.++++++| ++.|+.+.   ++     +++||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            345678888999999987 45666532   22     479999999999999999976 999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhc-ccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      ++||+++|++++|+|+.++.+++.+++++++++++|++++...... ............++.+++....        ...
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ--------IGL  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc--------CCh
Confidence            9999999999999999999999999999999999999876544221 0000111122234444321100        000


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      ...+++....... ........++|+++++|||||||.||||++||+++...+......+     +++.+|++++.+|++
T Consensus       771 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~  844 (1140)
T PRK06814        771 ADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVF  844 (1140)
T ss_pred             HHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchH
Confidence            0011111111111 1111135789999999999999999999999999998887766665     788899999999999


Q ss_pred             HHHHHH-HHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          277 HILDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       277 h~~g~~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |.+++. ..+.++..|+++++.+.  +...+.+.++++++|++.++|+++..+.+...                      
T Consensus       845 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------  902 (1140)
T PRK06814        845 HSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------
Confidence            999985 46678999999998764  56778899999999999999999987754210                      


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                       ..++        +++|.+++||+++++++.+.+.+.++.++++.||+||++..++...+.. .
T Consensus       903 -----------------~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~  956 (1140)
T PRK06814        903 -----------------PYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-N  956 (1140)
T ss_pred             -----------------cccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-C
Confidence                             0011        3899999999999999999999888999999999999988766554332 3


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhh-ccccCCcccccceEEEccCCcEEEe
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKII  512 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~-~~~~dgw~~TGDl~~~~~dG~l~~~  512 (620)
                      ..+++|+|+|++++++.+ .++      .++.|||+++|+.++.||+++++.+. +...+|||+|||+|++|+||++++.
T Consensus       957 ~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~ 1029 (1140)
T PRK06814        957 KAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIK 1029 (1140)
T ss_pred             CCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEE
Confidence            347999999999999987 321      24679999999999999998765432 2236899999999999999999999


Q ss_pred             ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc---ChHHHHHHHHHC
Q 007047          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP---CEEDTKKWAYSN  574 (620)
Q Consensus       513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~---~~~~~~~~~~~~  574 (620)
                      ||.||+||+ +|++|+|.|||++|.+|+.|.+++|++.+++   +.+++++..   +.+++.++++++
T Consensus      1030 GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 1096 (1140)
T PRK06814       1030 GRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAA 1096 (1140)
T ss_pred             ecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHc
Confidence            999999997 7999999999999999999999999997764   366666543   346777787765

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.2e-55  Score=571.80  Aligned_cols=467  Identities=20%  Similarity=0.222  Sum_probs=377.8

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.++++++||++|+++.   +      ..+||+||.++++++|+.|++.|+++|++|+|++++++++++++|
T Consensus      1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691       1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3468999999999999999999875   4      369999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|++|.++.+++.+++++++++++|++......+...     ... ..+.++...                
T Consensus      1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691       1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH---------------- 1257 (4334)
T ss_pred             HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc----------------
Confidence            9999999999999999999999999999999999988765433111     011 111111110                


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      ..     ............++++++++|||||||.||||+++|+++.+.+......+     +++++|+++++.|++|..
T Consensus      1258 ~~-----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 1327 (4334)
T PRK05691       1258 LD-----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDV 1327 (4334)
T ss_pred             cc-----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence            00     00011112234689999999999999999999999999999888776666     788999999999999998


Q ss_pred             HHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (620)
                      ++..++.++..|+++++.+.    ++..+.+.++++++|++.++|++++.+.+....                       
T Consensus      1328 s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 1384 (4334)
T PRK05691       1328 SVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----------------------- 1384 (4334)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc-----------------------
Confidence            88888889999999999753    789999999999999999999999987642100                       


Q ss_pred             HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccC-CCcc
Q 007047          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMC  433 (620)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~  433 (620)
                                      ..+        +++|.+++||+++++++.++|.+.+ +++++|.||+||++..++.... ....
T Consensus      1385 ----------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 1440 (4334)
T PRK05691       1385 ----------------AAC--------TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDG 1440 (4334)
T ss_pred             ----------------ccC--------CcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccC
Confidence                            001        3899999999999999999998877 6899999999999877664322 2222


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC--------CcccccceEEEcc
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP  505 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d--------gw~~TGDl~~~~~  505 (620)
                      ...++|+|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++|+.|.+.|..        +||+|||+|++++
T Consensus      1441 ~~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~ 1517 (4334)
T PRK05691       1441 ERSPIGRPLGNVLCRVLD-AELN--LLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA 1517 (4334)
T ss_pred             CCCcccceeCCCEEEEEC-CCCC--CCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC
Confidence            337899999999999998 6554  4556789999999999999999999999999832        4999999999999


Q ss_pred             CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcChHHHHHHHHHCCCCCCHHHH
Q 007047          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (620)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  583 (620)
                      ||.++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+...+  .+.++|++++..+.-                
T Consensus      1518 dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~---------------- 1580 (4334)
T PRK05691       1518 DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE---------------- 1580 (4334)
T ss_pred             CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC----------------
Confidence            9999999999999998 799999999999999999999999987543  358899998653210                


Q ss_pred             hccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          584 CSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       584 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                      ....++++++...++.++.|+.+..++-.|.
T Consensus      1581 ~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~ 1611 (4334)
T PRK05691       1581 AEAERLKAALAAELPEYMVPAQLIRLDQMPL 1611 (4334)
T ss_pred             CCHHHHHHHHHHhCccccCCcEEEEccccCC
Confidence            0011455566666666666666555554443

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.9e-55  Score=474.65  Aligned_cols=477  Identities=20%  Similarity=0.203  Sum_probs=364.2

Q ss_pred             HHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEE
Q 007047           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (620)
Q Consensus        49 ~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~  128 (620)
                      ...++++||++|+++.   ++.    +.+||.||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4678899999999874   322    579999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCc
Q 007047          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (620)
Q Consensus       129 vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  208 (620)
                      +|+++.++.+++.++++.++++.++++......+..... ........+.+.....         ......+++......
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  146 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP  146 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence            999999999999999999999999999876654432221 1223333344332110         011233444332211


Q ss_pred             cCcccCCCCCCCCeEEEEecCCCCCCcceeee--ccHHHHHHh---hhhhhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 007047          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (620)
Q Consensus       209 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~--th~~l~~~~---~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  283 (620)
                      .    ......++.++++|||||||.||+|++  +|.++....   ......+     .+..++++++.+|++|.+++..
T Consensus       147 ~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        147 A----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             C----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence            1    111234467899999999999999995  466654332   2222223     5678899999999999988877


Q ss_pred             HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCC
Q 007047          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (620)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (620)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......                            
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------  269 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------  269 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence            7778999999999876 89999999999999999999999988764211100                            


Q ss_pred             CCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCc
Q 007047          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (620)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~  442 (620)
                             +..++        +++|.+++||+++++++.+++++.+|..+++.||+||++.++...........+++|.|+
T Consensus       270 -------~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        270 -------DKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             -------ccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                   00111        389999999999999999999998899999999999999876554333334447899999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cC-CcccccceEEEccCCcEEEeecccCeEE
Q 007047          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-GWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (620)
Q Consensus       443 ~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~d-gw~~TGDl~~~~~dG~l~~~GR~~d~i~  520 (620)
                      ++ .++++| +++.  +.+.|+.|||+++|+ ++.||+++++.+.+.+ .+ |||+|||+|++++||++++.||.||++|
T Consensus       335 ~g-~~~i~d-~~~~--~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~  409 (511)
T PRK13391        335 FG-DLHILD-DDGA--ELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII  409 (511)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence            99 688888 5553  445678999999999 8889999999999888 33 9999999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHH
Q 007047          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (620)
Q Consensus       521 ~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  597 (620)
                      + +|++|+|.+||++|.+||.|.+|+|++.++.   +.+++++++.++...        ...     ...++++++.+.+
T Consensus       410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~--------~~~-----~~~~l~~~~~~~l  475 (511)
T PRK13391        410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDP--------GPA-----LAAELIAFCRQRL  475 (511)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCc--------ccc-----hHHHHHHHHHhhc
Confidence            6 7999999999999999999999999987654   367788876432100        000     0124555555666


Q ss_pred             HHHHHHCCCccCCccc
Q 007047          598 KNAAERNKVIFANWDT  613 (620)
Q Consensus       598 ~~~~~~~~~~~~~~~~  613 (620)
                      ++++.|.++.+++-+|
T Consensus       476 ~~~~~P~~i~~~~~~P  491 (511)
T PRK13391        476 SRQKCPRSIDFEDELP  491 (511)
T ss_pred             ccCcCCcEEEEeecCC
Confidence            6666666665555444

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1e-55  Score=468.93  Aligned_cols=404  Identities=31%  Similarity=0.472  Sum_probs=314.4

Q ss_pred             HHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCE
Q 007047           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (620)
Q Consensus        48 l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v  127 (620)
                      |+++|+++||++|+++.   ++     +++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            67899999999999871   12     78999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCChhHHHHHHhhcCccEEEE----cchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHH
Q 007047          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (620)
Q Consensus       128 ~vpi~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l  203 (620)
                      ++|++|.++.+++.++++.++++++|+    +......+..... .......++.++.....             ..+.+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFK-QEDPSSSIIILDRDDLP-------------KKEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHT-TSTTTEEEEEESHSSCT-------------TCHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhc-ccccccccccccccccc-------------ccccc
Confidence            999999999999999999999999997    2222222211111 11233445555432210             00000


Q ss_pred             HhcCccCcccCCC-CCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH-
Q 007047          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (620)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~-  281 (620)
                      .......... .+ ..++++++++|||||||.||+|.++|++++..+..+.  +... .+++  |++++.+|++|.+++ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            0000000000 00 0579999999999999999999999999999987754  1100 1233  699999999999999 


Q ss_pred             HHHHHHhhcCcEEEEecC-C---hHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007047          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (620)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (620)
                      ...+.++..|+++++.+. .   ++.+++.++++++|+++++|+++..+++..... ..                     
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~---------------------  270 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK---------------------  270 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc---------------------
Confidence            568889999999999986 2   467899999999999999999999987621110 00                     


Q ss_pred             hccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCC-eeEeecCCCCCCCceeecc-CCCcccc
Q 007047          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV  435 (620)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~-~~~~~~~  435 (620)
                                 ....++        +++|.+++||+++++++.+++++.++. +|++.||+||++.+++... .......
T Consensus       271 -----------~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  271 -----------ISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             -----------GTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             -----------cccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                       000112        379999999999999999999999986 9999999999999887664 3333445


Q ss_pred             CccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC-CcccccceEEEccCCcEEEeec
Q 007047          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDR  514 (620)
Q Consensus       436 ~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d-gw~~TGDl~~~~~dG~l~~~GR  514 (620)
                      +++|.|+|+++++|+| ++++ .+++.|+.|||+|+|+.++.||+++|+.+.+.|.+ |||+|||+|++|+||+++++||
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~-~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR  409 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTG-EPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR  409 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTS-SBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccc-cccc-ccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence            8899999999999999 5422 44567789999999999999999999999999965 8999999999999999999999


Q ss_pred             ccCeEEcC
Q 007047          515 KKNLIKIS  522 (620)
Q Consensus       515 ~~d~i~~~  522 (620)
                      .||+||+|
T Consensus       410 ~~~~i~~~  417 (417)
T PF00501_consen  410 SDDMIKVR  417 (417)
T ss_dssp             GSCEEEET
T ss_pred             eCCEEEeC
Confidence            99999973

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-54  Score=472.11  Aligned_cols=453  Identities=21%  Similarity=0.226  Sum_probs=353.9

Q ss_pred             cHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 007047           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (620)
Q Consensus        43 ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~  122 (620)
                      |+.++|.+.++++||++|+++.   +      +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999864   2      579999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHH
Q 007047          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (620)
Q Consensus       123 ~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  202 (620)
                      ++|++++|+++.++.+++.++++++++++++++......+.+.. ......+.++.+++....      ....+..++++
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGN------DLLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCccc------ccCCccccHHH
Confidence            99999999999999999999999999999999987666554432 223455566666543211      01112446777


Q ss_pred             HHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccc----ccCCC------CCCcEEEEe
Q 007047          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLSF  272 (620)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~----~~~~~------~~~d~~~~~  272 (620)
                      ++....... ... ....+.++++|||||||.||+|+++|.++..........+..    ....+      ..+++++..
T Consensus       148 ~~~~~~~~~-~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPER-DFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCcC-CCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            665432211 111 223445799999999999999999999998765443221100    00011      567899999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEec--C-ChHHHHHHHhhcCCcEEEechHHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 007047          273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL  348 (620)
Q Consensus       273 ~pl~h~~g~~~~~~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (620)
                      +|++|..++...+.++..|+++++.+  . ++..+++.++++++|++.++|..+.. +.+.+. ..              
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~--------------  290 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR--------------  290 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc--------------
Confidence            99999999988888999999999998  4 89999999999999999999876643 222111 00              


Q ss_pred             HHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeec
Q 007047          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (620)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~  427 (620)
                                           ...        ..+++|.+++||+++++++.+++.+.+ +..+++.||+||++.+....
T Consensus       291 ---------------------~~~--------~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  341 (533)
T PRK07798        291 ---------------------GPY--------DLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT  341 (533)
T ss_pred             ---------------------ccC--------CCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence                                 000        114899999999999999999999888 78999999999997655543


Q ss_pred             cCCCccccCccc--cCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc--C--CcccccceE
Q 007047          428 FPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIG  501 (620)
Q Consensus       428 ~~~~~~~~~~~G--~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~--d--gw~~TGDl~  501 (620)
                      .....   ...|  .+.++..+++++ +++...+.+....|+++ +++.++.||+++++.+.+.|.  +  +||+|||++
T Consensus       342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~  416 (533)
T PRK07798        342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRA  416 (533)
T ss_pred             CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEE
Confidence            22222   2233  778899999998 66664444322226665 556899999999999998883  3  599999999


Q ss_pred             EEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      ++|+||++++.||+||+||. +|++|+|.+||++|.++|.|.+|+|++.++.   +.++++++++
T Consensus       417 ~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  480 (533)
T PRK07798        417 RVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLR  480 (533)
T ss_pred             EEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEEC
Confidence            99999999999999999996 8999999999999999999999999987653   4788888764

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.2e-55  Score=476.12  Aligned_cols=395  Identities=18%  Similarity=0.145  Sum_probs=295.3

Q ss_pred             cCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH------HHhcccccccccCccEEEEecC
Q 007047          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  181 (620)
Q Consensus       108 ~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~vi~~~~  181 (620)
                      ++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+..... . .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      11111110 0 11222222211


Q ss_pred             CcHHHHHHHhhcCCceeeHHHHHhcCccC------cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhh
Q 007047          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (620)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~  255 (620)
                      ....    .........+|++++......      ........++|+++|+|||||||.||||++||.+++..+......
T Consensus        79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPV----AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             Cccc----CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            1000    000001123566665321110      111112356899999999999999999999999988766544443


Q ss_pred             cccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHH
Q 007047          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (620)
Q Consensus       256 ~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (620)
                      +     +++.+|++++.+|++|.+++...+.+++.|+++++.+.  ++..+++.|+++++|++.++|+++..+.+.... 
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            3     67889999999999999887666778999999998863  788999999999999999999999987642100 


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc--CCee
Q 007047          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  411 (620)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v  411 (620)
                                                        .....++        ++||.+++||+++++++.+++++.+  +..+
T Consensus       229 ----------------------------------~~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        229 ----------------------------------AMEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             ----------------------------------ccccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                              0001112        2899999999999999998887733  4789


Q ss_pred             EeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCc--ccccCCChhhhhcc
Q 007047          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  489 (620)
Q Consensus       412 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v--~~gy~~~~~~t~~~  489 (620)
                      ++.||+||++...+..........+++|.|.++++++|+| +++...+.+.++.|||+|+|+.+  +.|||+++ .+ +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence            9999999987544332222223347899999999999999 77766655544689999999977  58999765 33 34


Q ss_pred             ccCC----------cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhc-CcCcceEEEEecCCC----c
Q 007047          490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDIWVYGDSLK----S  554 (620)
Q Consensus       490 ~~dg----------w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~-~p~V~~~~V~~~~~~----~  554 (620)
                      +.+|          ||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+ ||+|.+|+|++.+++    +
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~  422 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE  422 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence            4455          6899999999999999999999999996 8999999999999986 999999999997763    4


Q ss_pred             eEEEEE
Q 007047          555 MLVAVV  560 (620)
Q Consensus       555 ~~~a~v  560 (620)
                      .++|+|
T Consensus       423 ~~~a~v  428 (499)
T PLN03051        423 LLVIFL  428 (499)
T ss_pred             EEEEEE
Confidence            688888

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-55  Score=480.68  Aligned_cols=449  Identities=21%  Similarity=0.278  Sum_probs=349.9

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc
Q 007047           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (620)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~  111 (620)
                      ..+|.+-.+..++.++|...++++|+..++      +...+.++.+||.||..+++++|.+|.+.|+++||+|+++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~   84 (579)
T PRK09192         11 SSLPRRYADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD   84 (579)
T ss_pred             ccccccccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            566777788899999999999998866544      22233457899999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhCCCEEEecCCCCC-------hhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcH
Q 007047          112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA  184 (620)
Q Consensus       112 ~e~~~~~lA~~~~G~v~vpi~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~  184 (620)
                      +++++++|||+++|++++|+++..+       .+++.++++.++++++|+++.....+......    ...++       
T Consensus        85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~-------  153 (579)
T PRK09192         85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH-------  153 (579)
T ss_pred             hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc-------
Confidence            9999999999999999999976443       57899999999999999988766544332110    00011       


Q ss_pred             HHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhh-hcccccCCC
Q 007047          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKM  263 (620)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~-~~~~~~~~~  263 (620)
                                  ..++.++..... .........++++++++|||||||.||+|+++|++++..+..... .+     ++
T Consensus       154 ------------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~  215 (579)
T PRK09192        154 ------------VLSHAWFKALPE-ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV  215 (579)
T ss_pred             ------------eeehhhhcccCC-CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence                        122333322211 111122356789999999999999999999999999988876655 44     77


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhh
Q 007047          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (620)
Q Consensus       264 ~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  337 (620)
                      ..+|++++++|++|.+++.. ++.++..|+++++...     ++..+++.+.++++++++..|.++..+.......    
T Consensus       216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----  291 (579)
T PRK09192        216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----  291 (579)
T ss_pred             CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----
Confidence            88999999999999999875 4556888999877652     6888999999999998877665555443211100    


Q ss_pred             chHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC------Cee
Q 007047          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFL  411 (620)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v  411 (620)
                                                    .....+++        ++|.+++||+++++.+.+.+.+.++      ..+
T Consensus       292 ------------------------------~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~  333 (579)
T PRK09192        292 ------------------------------DLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF  333 (579)
T ss_pred             ------------------------------cccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhc
Confidence                                          00112232        8899999999999999998888763      358


Q ss_pred             EeecCCCCCCCceeeccCCCc---------------------------cccCccccCccCeeEEEeecCCCCCCCCCCCC
Q 007047          412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP  464 (620)
Q Consensus       412 ~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~  464 (620)
                      ++.||+||++..++.......                           ....++|.++|+++++|+| +++.  .++.|+
T Consensus       334 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~--~~~~g~  410 (579)
T PRK09192        334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGM--PLPERV  410 (579)
T ss_pred             ccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCC--CCCCCC
Confidence            999999999876654332110                           1125789999999999998 6554  344568


Q ss_pred             CceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcc
Q 007047          465 CGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE  543 (620)
Q Consensus       465 ~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~  543 (620)
                      .|||+++|+.++.||+++ +.+.+.+ .+|||+|||+|++ ++|+++++||+||+||+ +|++|+|.+||++|.+||+|.
T Consensus       411 ~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~  487 (579)
T PRK09192        411 VGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELR  487 (579)
T ss_pred             EEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCcc
Confidence            999999999999999999 5666666 7999999999999 99999999999999997 799999999999999999998


Q ss_pred             --eEEEEecCCC--ceEEEEEEcC
Q 007047          544 --DIWVYGDSLK--SMLVAVVVPC  563 (620)
Q Consensus       544 --~~~V~~~~~~--~~~~a~vv~~  563 (620)
                        +|+|++.+++  +.++++++..
T Consensus       488 ~~~~~v~~~~~~~~~~~~~~v~~~  511 (579)
T PRK09192        488 SGDAAAFSIAQENGEKIVLLVQCR  511 (579)
T ss_pred             CCcEEEEEeccCCCeeEEEEEEec
Confidence              8999886654  3677777753

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-54  Score=478.78  Aligned_cols=451  Identities=17%  Similarity=0.207  Sum_probs=334.9

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +++.++|.+++..+|+++|+++........+..+.+||.||..+++++|++|.+.| .+||+|+++++|++++++++|||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            36889999999999999999875110011122468999999999999999999999 68999999999999999999999


Q ss_pred             HhCCCEEEecCC---CCChhHHHHHHhhcCccEEEEcchhHHHhccccccc-ccCccEEEEecCCcHHHHHHHhhcCCce
Q 007047          122 NALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (620)
Q Consensus       122 ~~~G~v~vpi~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (620)
                      +++|++++|+++   ..+.+++.++++.+++++++++++....+....... ......++..+..               
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  144 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------  144 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc---------------
Confidence            999999999997   457889999999999999999987665543221100 0011112211110               


Q ss_pred             eeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhc-ccccCCCCCCcEEEEecChh
Q 007047          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL-DQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~-~~~~~~~~~~d~~~~~~pl~  276 (620)
                          ++..   ..........++++++++|||||||.||||+++|.+++..+......+ .........++++++.+|++
T Consensus       145 ----~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  217 (578)
T PRK05850        145 ----DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFY  217 (578)
T ss_pred             ----cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCC
Confidence                0000   000111234678999999999999999999999999988776544321 11001135678999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHH-HHHHHHHHhhchHHHHHHHHHH
Q 007047          277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIH-EGIKKALEELRPLRRRIFDALY  349 (620)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~  349 (620)
                      |.+|+.. .+.+++.|+++++.+.     ++..+++.+.+++++++ .+|.++..+. ......                
T Consensus       218 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~----------------  280 (578)
T PRK05850        218 HDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD----------------  280 (578)
T ss_pred             CCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh----------------
Confidence            9999875 6778999999998863     68899999999999865 5665543332 111000                


Q ss_pred             HHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC------CeeEeecCCCCCCCc
Q 007047          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP  423 (620)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~  423 (620)
                                        .....++        +++|.+++||+++++++.++|.+.|+      ..+++.||+||++..
T Consensus       281 ------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  334 (578)
T PRK05850        281 ------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVY  334 (578)
T ss_pred             ------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhh
Confidence                              0001112        27899999999999999999888762      368999999998765


Q ss_pred             eeeccCCCc------------------------cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCccccc
Q 007047          424 TTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY  479 (620)
Q Consensus       424 ~~~~~~~~~------------------------~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy  479 (620)
                      +........                        ....++|.|. +.+++++| +++. .+++.|+.|||+|+|+.++.||
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~gY  411 (578)
T PRK05850        335 VATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAAGY  411 (578)
T ss_pred             eeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccccc
Confidence            543321110                        0001334443 57899998 4433 4456778999999999999999


Q ss_pred             CCChhhhhcccc------------CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEE
Q 007047          480 YKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV  547 (620)
Q Consensus       480 ~~~~~~t~~~~~------------dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V  547 (620)
                      +++|+.|.+.|.            +|||+|||+|+++ ||+|++.||+||+||+ +|++|+|.+||++|.+||.+ +|+|
T Consensus       412 ~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~~v  488 (578)
T PRK05850        412 WQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RVAA  488 (578)
T ss_pred             cCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cEEE
Confidence            999999998883            5799999999997 9999999999999997 89999999999999999986 4777


Q ss_pred             EecCCC--ceEEEEEEcCh
Q 007047          548 YGDSLK--SMLVAVVVPCE  564 (620)
Q Consensus       548 ~~~~~~--~~~~a~vv~~~  564 (620)
                      ++.+++  +.++|+|++++
T Consensus       489 ~~v~~~~~~~~~a~v~~~~  507 (578)
T PRK05850        489 ISVPDDGTEKLVAIIELKK  507 (578)
T ss_pred             EEecCCCceEEEEEEEecc
Confidence            776654  57889988754

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.4e-54  Score=466.82  Aligned_cols=425  Identities=21%  Similarity=0.259  Sum_probs=341.1

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEE
Q 007047           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (620)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~  154 (620)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHhccccccccc-CccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCC
Q 007047          155 QDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG  233 (620)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG  233 (620)
                      ++.....+..... ... ..+.++......           .....|++......    .......++.++++|||||||
T Consensus        90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG  153 (502)
T PRK08276         90 SAALADTAAELAA-ELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG  153 (502)
T ss_pred             ccchhhHHHHHhh-hccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence            8876654432221 112 344444442211           12234555443221    111235577899999999999


Q ss_pred             CcceeeeccHHHHHHhh--hhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhh
Q 007047          234 DPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLME  310 (620)
Q Consensus       234 ~PK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~  310 (620)
                      .||+|+++|.++.....  ...... ........++++++.+|++|..++...+.++..|+++++.+. ++..+++.+++
T Consensus       154 ~PK~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  232 (502)
T PRK08276        154 RPKGIKRPLPGLDPDEAPGMMLALL-GFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIER  232 (502)
T ss_pred             CCceEEEccCCcchhhhhHHhhhhh-hhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHH
Confidence            99999999877654332  111111 001123467899999999999998877788999999988875 89999999999


Q ss_pred             cCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEe
Q 007047          311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS  390 (620)
Q Consensus       311 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~  390 (620)
                      +++|++.++|+++..+.+.....                                   .+.+++        +++|.+++
T Consensus       233 ~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~  269 (502)
T PRK08276        233 YRVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIH  269 (502)
T ss_pred             hCCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEe
Confidence            99999999999998886421100                                   011122        38999999


Q ss_pred             ecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEE
Q 007047          391 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  470 (620)
Q Consensus       391 gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v  470 (620)
                      ||++++.++.+++.+.++..+++.||+||++.+++..........+++|.|+ +.+++++| +++.  +++.|+.|||++
T Consensus       270 ~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v  345 (502)
T PRK08276        270 AAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYF  345 (502)
T ss_pred             cCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEE
Confidence            9999999999999998899999999999999866655443334447899999 78999998 5554  455678999999


Q ss_pred             ecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEe
Q 007047          471 RGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG  549 (620)
Q Consensus       471 ~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~  549 (620)
                      +|+.++.||+++++.+.+.+ .+|||+|||++++++||.+++.||.||+||+ +|++|+|.+||..|.+||+|.+|+|++
T Consensus       346 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~  424 (502)
T PRK08276        346 EMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFG  424 (502)
T ss_pred             ECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence            99999999999999999998 4599999999999999999999999999996 899999999999999999999999998


Q ss_pred             cCCC---ceEEEEEEcCh
Q 007047          550 DSLK---SMLVAVVVPCE  564 (620)
Q Consensus       550 ~~~~---~~~~a~vv~~~  564 (620)
                      ..++   +.++++|++++
T Consensus       425 ~~~~~~~~~~~~~v~~~~  442 (502)
T PRK08276        425 VPDEEMGERVKAVVQPAD  442 (502)
T ss_pred             CCCcccCceEEEEEEECC
Confidence            7654   48899999753

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-54  Score=496.97  Aligned_cols=451  Identities=14%  Similarity=0.120  Sum_probs=333.5

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ....++.++|.++++++||++|+++.   +      +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45578999999999999999999864   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      |||+++|++++|++|.   +++.++++.++++++|++.+....+...       ...+++++......  ..........
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~--~~~~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRD--LDLPDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCcccc--ccCCcchhhh
Confidence            9999999999999984   6899999999999999987766544221       13445544211000  0000000011


Q ss_pred             eHHHHHhcCccCc--ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       199 ~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      +++++.......+  ....+..++|+++|+|| ||||.||++.++|.++..........+     +++.+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            1111111000000  01112246899999999 588888888888877665544433333     678899999999999


Q ss_pred             HHHHHHHHHH-HhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          277 HILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       277 h~~g~~~~~~-~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      |.+++...+. ++..|+++++.+. +++.+++.++++++|+++++|+++..+++....                      
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~----------------------  714 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF----------------------  714 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence            9999876554 4666666666654 899999999999999999999999988642100                      


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEeecCCCCCCCceeeccCCCcc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                     ...++        +++|.++.  +.+++++.+.+.+.++ +++++.||+||++...... .  ..
T Consensus       715 ---------------~~~~~--------~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~  766 (994)
T PRK07868        715 ---------------VLHGN--------HPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA  766 (994)
T ss_pred             ---------------ccCCC--------CceEEEec--CCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence                           00011        37888763  3499999999999886 8899999999987654322 1  23


Q ss_pred             ccCccccCccCe-eEEEeec----------CCCCCCCCCCCCCceEEEecCCcccccCCChhhhh--ccc--cCCccccc
Q 007047          434 MVGTAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR--ESI--IDGWFHTG  498 (620)
Q Consensus       434 ~~~~~G~~~~~~-~i~i~~~----------~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~--~~~--~dgw~~TG  498 (620)
                      .++++|+|+||+ +++|...          +++....++.|+.|||+++++..    + +|+.+.  ..|  .||||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            348999999998 6776521          12211335567899999999753    3 454432  234  38999999


Q ss_pred             ceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC--ceEEEEEEcCh------HHHHHH
Q 007047          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCE------EDTKKW  570 (620)
Q Consensus       499 Dl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~vv~~~------~~~~~~  570 (620)
                      |+|++|+||+|+|+||+||+||+ +|.+|+|.|||++|.+||.|.+|+|++.+++  +.++|+|++++      +++.++
T Consensus       842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~  920 (994)
T PRK07868        842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEA  920 (994)
T ss_pred             ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHH
Confidence            99999999999999999999997 7889999999999999999999999997764  47899998643      445555


Q ss_pred             HH
Q 007047          571 AY  572 (620)
Q Consensus       571 ~~  572 (620)
                      ++
T Consensus       921 l~  922 (994)
T PRK07868        921 LA  922 (994)
T ss_pred             HH
Confidence            54

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-53  Score=463.61  Aligned_cols=429  Identities=22%  Similarity=0.248  Sum_probs=339.7

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEE
Q 007047           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (620)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~  154 (620)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHhcccccccccCccEEEEecCCcHHHHH-----HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecC
Q 007047          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE-----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (620)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TS  229 (620)
                      +......+.+....   .. .++...........     ..........+|+++.....    ......++++++++|||
T Consensus        90 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALPA---GV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhhc---cc-ceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            88766544322211   11 11111110000000     00001112345665543221    11233578999999999


Q ss_pred             CCCCCcceeeeccHHHHHH---hhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHH
Q 007047          230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (620)
Q Consensus       230 GTTG~PK~v~~th~~l~~~---~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~  305 (620)
                      ||||.||+|+++|.+....   .......+     ++..++++++.+|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            9999999999877654333   22223333     67889999999999998887666667888999888765 899999


Q ss_pred             HHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcE
Q 007047          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (620)
Q Consensus       306 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  385 (620)
                      +.++++++|++.++|+++..+++.....                                   .+..++        +++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEV-----------------------------------RAKYDV--------SSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhh-----------------------------------cccCCC--------Cce
Confidence            9999999999999999999876421110                                   000111        389


Q ss_pred             EEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCC
Q 007047          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (620)
Q Consensus       386 r~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~  465 (620)
                      |.+++||+++++++.+++.+.++..+++.||+||++.+++.+.......++++|.++++++++++| +++.  +++.|+.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGR--PLPQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCC--CCCCCCc
Confidence            999999999999999999998899999999999999876655444444558899999999999999 6554  4556789


Q ss_pred             ceEEEecCCccc-ccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcce
Q 007047          466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  544 (620)
Q Consensus       466 Gei~v~g~~v~~-gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~  544 (620)
                      |||+++|+.++. ||+++++.+.+.+.+|||+|||++++++||++++.||.||+||+ +|++|+|.+||+.|.++|+|.+
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~  429 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD  429 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence            999999998875 99999999988889999999999999999999999999999996 8999999999999999999999


Q ss_pred             EEEEecCCC---ceEEEEEEcC
Q 007047          545 IWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       545 ~~V~~~~~~---~~~~a~vv~~  563 (620)
                      |+|++.++.   +.++++|+++
T Consensus       430 ~~v~~~~~~~~~~~~~~~v~~~  451 (509)
T PRK12406        430 CAVFGIPDAEFGEALMAVVEPQ  451 (509)
T ss_pred             EEEEeeeccccCceeEEEEEEC
Confidence            999987654   4678888764

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-53  Score=463.42  Aligned_cols=424  Identities=18%  Similarity=0.225  Sum_probs=336.1

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      |.++.+.|..+|...|+.+++...   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            457899999999999999988654   432    6799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHH-------HHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhc
Q 007047          121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (620)
                      |+++|++++|+++..+.+++       .++++.++++.+++++........ ...                        .
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE------------------------K  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc------------------------c
Confidence            99999999999988776544       456777899999998765432211 000                        0


Q ss_pred             CCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCC-cEEEEe
Q 007047          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF  272 (620)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~-d~~~~~  272 (620)
                      ....+.++++......   ......++++++++|||||||.||+|+++|.++...+......+     ++..+ |++++.
T Consensus       129 ~~~~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~  200 (545)
T PRK07768        129 GIRVLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW  200 (545)
T ss_pred             CCceeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence            1123445555443211   22345689999999999999999999999999998877665554     56665 899999


Q ss_pred             cChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      +|++|..++.. +..++..|+++++++.     ++..+...+++++++++..+|.++..+.+.+.....           
T Consensus       201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------  269 (545)
T PRK07768        201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK-----------  269 (545)
T ss_pred             CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-----------
Confidence            99999999875 5567999999988753     677888999999999998888777666543211100           


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHh---cCC---eeEeecCCCCC
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET  420 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~YG~TE~  420 (620)
                                         .   ...++        +++|.+++||+++++.+.+++.+.   +|.   .+++.||+||+
T Consensus       270 -------------------~---~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~  319 (545)
T PRK07768        270 -------------------P---GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA  319 (545)
T ss_pred             -------------------c---cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                               0   00112        389999999999999999988774   454   49999999999


Q ss_pred             CCceeeccCCC-------------------------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCc
Q 007047          421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  475 (620)
Q Consensus       421 ~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v  475 (620)
                      +..++......                         ....+++|+|++++++++++ +++.  +++.|+.|||+++|+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~--~~~~g~~Gel~v~~~~~  396 (545)
T PRK07768        320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ--VLPPRGVGVIELRGESV  396 (545)
T ss_pred             ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC--CCCCCCEEEEEEccCcc
Confidence            87655433211                         11236899999999999998 6654  45567899999999999


Q ss_pred             ccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEe
Q 007047          476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG  549 (620)
Q Consensus       476 ~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~  549 (620)
                      +.||++.+......+.+|||+|||++++++||+++++||.||+||+ +|++|+|.+||+.|.+||+|.+++|++
T Consensus       397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~  469 (545)
T PRK07768        397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVA  469 (545)
T ss_pred             cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEE
Confidence            9999987665554457899999999999999999999999999997 799999999999999999999987765

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.3e-53  Score=453.64  Aligned_cols=423  Identities=24%  Similarity=0.308  Sum_probs=344.7

Q ss_pred             eHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcch
Q 007047           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (620)
Q Consensus        78 Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~  157 (620)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcce
Q 007047          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (620)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~  237 (620)
                      .....              +.                  ...+.++................+++++++|||||||.||+
T Consensus        81 ~~~~~--------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD--------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc--------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110              00                  00111111111111111233457889999999999999999


Q ss_pred             eeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChHHHHHHHhhcCCcEEE
Q 007047          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (620)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~  317 (620)
                      |.++|.++...+......+     ++.++|++++.+|++|..++...+.++..|+++++.+. ...+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence            9999999999888777666     78899999999999999988777788999999999864 34999999999999999


Q ss_pred             echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCH
Q 007047          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (620)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~  397 (620)
                      ++|+++..+.+....                                                 .+++|.+++||+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999887642100                                                 0289999999999999


Q ss_pred             HHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCccc
Q 007047          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (620)
Q Consensus       398 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~  477 (620)
                      ++.+++++ +|..+++.||+||++..++...........++|.|++++++++.. ++.       ++.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence            99998876 499999999999998866554433322223589999999999854 222       157999999999999


Q ss_pred             ccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---c
Q 007047          478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---S  554 (620)
Q Consensus       478 gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~  554 (620)
                      ||+++++.+...+.+|||+|||++++++||++++.||.||+||+ +|++|+|.+||++|.++|.|.+++|++.+++   .
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  383 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ  383 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence            99999988887778899999999999999999999999999997 7999999999999999999999999987754   3


Q ss_pred             eEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          555 MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       555 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .++++++++++.                  ...++.+++.+.++.+..|..+.+++-+|++
T Consensus       384 ~~~~~v~~~~~~------------------~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t  426 (436)
T TIGR01923       384 VPVAYIVSESDI------------------SQAKLIAYLTEKLAKYKVPIAFEKLDELPYN  426 (436)
T ss_pred             eeEEEEEECCCC------------------CHHHHHHHHHHhhhCCCCCeEEEEecCCCCC
Confidence            677888875420                  0125566666777777777777777666644

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=6.4e-52  Score=438.59  Aligned_cols=389  Identities=25%  Similarity=0.333  Sum_probs=324.2

Q ss_pred             eHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcc
Q 007047           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (620)
Q Consensus        78 Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~  156 (620)
                      ||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcc
Q 007047          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (620)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  236 (620)
                      .....+.....       .++......                 ..................++++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            77654422211       112221100                 000000000011111145789999999999999999


Q ss_pred             eeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcC
Q 007047          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (620)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~  312 (620)
                      +|.+||+++...+......+     .+..+|++++..|++|.+++...+.++..|+++++.+.    .+..+...+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999988877665     77889999999999999998888899999999999875    2688999999999


Q ss_pred             CcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeec
Q 007047          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (620)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG  392 (620)
                      +|.+.++|.+++.+.+...   .                                     .+        +++|.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~---~-------------------------------------~~--------~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP---P-------------------------------------AL--------ASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh---h-------------------------------------cc--------cCceEEEEeC
Confidence            9999999999999876422   0                                     01        3899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CeeEeecCCCCCCCceeeccCCCc---c-ccCccccCccCeeEEEeecCCCCCCCCCCCCCce
Q 007047          393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM---C-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (620)
Q Consensus       393 ~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~---~-~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Ge  467 (620)
                      +++++++.+++.+.++ ..+++.||+||++.+++.......   . .+.++|.|+++++++|++ +++  .+++.|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceE
Confidence            9999999999999887 899999999999987753322211   1 157899999999999999 554  4455678999


Q ss_pred             EEEecCCcccccCCChhhhhccccC-------C--cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhc
Q 007047          468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (620)
Q Consensus       468 i~v~g~~v~~gy~~~~~~t~~~~~d-------g--w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~  538 (620)
                      |+|+|+.++.||+++++.+.+.|..       |  ||+|||++++|++|++++.||.||+|++ +|++++|.+||+.|..
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~  399 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR  399 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence            9999999999999999999888732       2  9999999999999999999999999996 8999999999999999


Q ss_pred             CcCcceEEE
Q 007047          539 APIIEDIWV  547 (620)
Q Consensus       539 ~p~V~~~~V  547 (620)
                      ||.|.+|+|
T Consensus       400 ~~~v~~~~v  408 (408)
T TIGR01733       400 HPGVREAVV  408 (408)
T ss_pred             CcchhhhcC
Confidence            999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=4e-51  Score=407.67  Aligned_cols=451  Identities=19%  Similarity=0.155  Sum_probs=348.0

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...|+.++|..+++++|+++|+++.   +.    .+++||+|+..+++++|+.|+..|++.||.|+++|+|.+|++..+|
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl  147 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL  147 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence            3479999999999999999999987   42    2579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      +++++|++...||++...+.|.|.++.++++.+|++.+....+.+.........-.+...+....         ..+..+
T Consensus       148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~~  218 (649)
T KOG1179|consen  148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIES  218 (649)
T ss_pred             hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHHH
Confidence            99999999999999999999999999999999999999988776663332222223333322211         111223


Q ss_pred             HHHHHhcCccCcc---cCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          200 WDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       200 ~~~l~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      +.+.++.....+.   .....+-.++++.+|||||||.||+.++||.-+...+......+     +++++|+++..+|++
T Consensus       219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPLY  293 (649)
T KOG1179|consen  219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPLY  293 (649)
T ss_pred             HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchhH
Confidence            3333333333332   22344677899999999999999999999999998888666666     899999999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      |+.+.+. +..++..|+|+++-.. +..++|+.+.+|++|++...--+.+.|++......++                  
T Consensus       294 Hsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er------------------  355 (649)
T KOG1179|consen  294 HSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER------------------  355 (649)
T ss_pred             HHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc------------------
Confidence            9998875 6678999999999887 9999999999999999999888888876532221110                  


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCC-eeEeecCCCCCCCceeeccCCCcc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                                 ..++|..+  |.-+.+++.+.|.+.||. +|.+.||+||............  
T Consensus       356 ---------------------------~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~v--  404 (649)
T KOG1179|consen  356 ---------------------------QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRV--  404 (649)
T ss_pred             ---------------------------CceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCcc--
Confidence                                       03677665  566889999999999985 4999999999877555442211  


Q ss_pred             ccCccccC-------ccCeeEEEeecC--------CCCCCCCCCCCCceEEE--ecCCc---ccccCCChhhhhccc---
Q 007047          434 MVGTAGPV-------SVYSELRLEEVP--------EMGYSPLDDPPCGEVCV--RGKTL---FSGYYKNPDLTRESI---  490 (620)
Q Consensus       434 ~~~~~G~~-------~~~~~i~i~~~~--------~~~~~~~~~g~~Gei~v--~g~~v---~~gy~~~~~~t~~~~---  490 (620)
                        |.+|..       +| +++.-+|+.        +|-=.++++|++|.++-  ....-   |.||.++.++|.+..   
T Consensus       405 --GA~G~~~~~~~~l~p-~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  405 --GACGFMSRLLKLLYP-FRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             --ccccchhhhhhhccc-eEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence              333321       22 222222312        22224567889996652  22333   899999888886654   


Q ss_pred             ----cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEec--CCC--ceEEEEEEc
Q 007047          491 ----IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD--SLK--SMLVAVVVP  562 (620)
Q Consensus       491 ----~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~--~~~--~~~~a~vv~  562 (620)
                          .|-||.|||+-.+|+.|+|||.+|..|+... +|+||+..|||++|....++.||.|+|+  ++.  ..-+|.|+.
T Consensus       482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~  560 (649)
T KOG1179|consen  482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL  560 (649)
T ss_pred             hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence                3559999999999999999999999999998 6999999999999999999999999983  332  355677774


Q ss_pred             Ch
Q 007047          563 CE  564 (620)
Q Consensus       563 ~~  564 (620)
                      ++
T Consensus       561 ~p  562 (649)
T KOG1179|consen  561 DP  562 (649)
T ss_pred             cC
Confidence            43

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-51  Score=430.73  Aligned_cols=386  Identities=16%  Similarity=0.117  Sum_probs=320.5

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEE
Q 007047           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (620)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~  154 (620)
                      +++||.||.++++++|++|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++.++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            47999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCC
Q 007047          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (620)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  234 (620)
                      ++....                  ..                                ......++++++++|||||||.
T Consensus        86 ~~~~~~------------------~~--------------------------------~~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFT------------------KL--------------------------------EAVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCcccc------------------cc--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence            653100                  00                                0012356889999999999999


Q ss_pred             cceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcC
Q 007047          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (620)
Q Consensus       235 PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~  312 (620)
                      ||+|++||.++...+..+...+     .+..+|+.+..+|++|.+++.. .+.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999998887766655     6778899999999999999864 6778999999988876 8999999999999


Q ss_pred             CcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeec
Q 007047          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (620)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG  392 (620)
                      +|+++++|+++..+.+....                                                 ..+++.+++||
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999887642110                                                 02678899999


Q ss_pred             CCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec
Q 007047          393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (620)
Q Consensus       393 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g  472 (620)
                      +++++++.+.+++. +.++++.||+||++.+.....   ....+++|+|+|++++++.+ +        .++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence            99999999999886 678999999999986443221   12337899999999999875 2        23579999975


Q ss_pred             CCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC
Q 007047          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  552 (620)
Q Consensus       473 ~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~  552 (620)
                      .                  ++||+|||+|++++||+++++||.||+||+ +|++|+|.+||+++.++|+|.+|+|++.++
T Consensus       289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            2                  679999999999999999999999999997 799999999999999999999999998765


Q ss_pred             C---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          553 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       553 ~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .   +.++++++.++. +                 ...++++++.++++.+..|.++.+++-.|++
T Consensus       350 ~~~~~~~~~~v~~~~~-~-----------------~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t  397 (414)
T PRK08308        350 PVAGERVKAKVISHEE-I-----------------DPVQLREWCIQHLAPYQVPHEIESVTEIPKN  397 (414)
T ss_pred             CCCCceEEEEEEeCCC-C-----------------CHHHHHHHHHHhCccccCCcEEEEeccCCCC
Confidence            4   477788876421 0                 1125666667777777777777777776654

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.8e-39  Score=363.25  Aligned_cols=409  Identities=22%  Similarity=0.244  Sum_probs=330.7

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.+.|.+.+...|+++|+++.   +      .++||+|+..+++++|+.|.+.|+.++++|+++.+.+.++++.++|
T Consensus       226 ~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~  296 (642)
T COG1020         226 RLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA  296 (642)
T ss_pred             cchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence            478999999999999999998764   2      4699999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      ++++|+.++|+++.++.+.+.++++.++++.+++.........        .... +..+...                 
T Consensus       297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~-----------------  350 (642)
T COG1020         297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV--------GLPG-LALDDAL-----------------  350 (642)
T ss_pred             HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc--------cCCc-ccccccc-----------------
Confidence            9999999999999999999999999999999999833221100        0000 1111000                 


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                         .......+. .....+++.+|++|||||||.||||+.+|+++.+.+......+     .++..|+++...++.+...
T Consensus       351 ---~~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~  421 (642)
T COG1020         351 ---SEIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDAS  421 (642)
T ss_pred             ---ccCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchh
Confidence               000000000 1234568999999999999999999999999999777666555     7888999999999977777


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      ....+.++..|+++++...    ++..+.+.+.++++|++..+|.++..+......... .+                  
T Consensus       422 ~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-~~------------------  482 (642)
T COG1020         422 VFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL-IS------------------  482 (642)
T ss_pred             HHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc-cC------------------
Confidence            7788889999999999874    799999999999999999999999988653110000 00                  


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc--CCeeEeecCCCCCCCceeeccCCCccc
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM  434 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (620)
                                              ....+|.+++||+.++..+...+....  ...+.+.||+||+....+.........
T Consensus       483 ------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~  538 (642)
T COG1020         483 ------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE  538 (642)
T ss_pred             ------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC
Confidence                                    002489999999999999998877655  468999999999777655444322111


Q ss_pred             -cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCC-cccccceEEEccCCcEEEe
Q 007047          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG-WFHTGDIGQILPNGVVKII  512 (620)
Q Consensus       435 -~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dg-w~~TGDl~~~~~dG~l~~~  512 (620)
                       ...+|.|+++..+.|++ ...  .+++.|..||+++.|.++..||+++|+.|.+.|... +|+|||++++..||.+.++
T Consensus       539 ~~~piG~p~~n~~~~ild-~~~--~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~l  615 (642)
T COG1020         539 SRVPIGRPVANTQLYILD-QGL--RPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYL  615 (642)
T ss_pred             CCCCcceeeCCCeEEEEC-CCC--CcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEe
Confidence             35899999999999998 444  455555789999999999999999999999999664 9999999999999999999


Q ss_pred             ecccCeEEcCCceeeccHHHHHHHhcCc
Q 007047          513 DRKKNLIKISQGEYVALEYLENVYCVAP  540 (620)
Q Consensus       513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p  540 (620)
                      ||.|+++|+ .|++|.+.+||..+.++|
T Consensus       616 gr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         616 GRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            999999998 699999999999998875

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-39  Score=336.22  Aligned_cols=301  Identities=24%  Similarity=0.308  Sum_probs=239.1

Q ss_pred             CCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEE
Q 007047          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG  295 (620)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v  295 (620)
                      ...++|+++++|||||||.||+|+++|.++...+......       +...++++..+|++|..++...+.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            3457899999999999999999999999999887765433       234578899999999999887778889999988


Q ss_pred             Eec----CChHHHHHHHhhcC--CcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHH
Q 007047          296 YYH----GDLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (620)
Q Consensus       296 ~~~----~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (620)
                      ++.    .++..+++.+++++  .++...+|.++..+......                                     
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------  146 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------  146 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------
Confidence            732    27899999999998  45666778776654321000                                     


Q ss_pred             HHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEE
Q 007047          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (620)
Q Consensus       370 ~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i  449 (620)
                       ..++        .++|.+++||+++++++.+++.+ +++++++.||+||++..+           ...|.|++++++++
T Consensus       147 -~~~~--------~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i  205 (358)
T PRK07824        147 -TAAL--------AELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRV  205 (358)
T ss_pred             -cCCc--------ccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc-----------CcCceeCCCCEEEe
Confidence             0001        38999999999999999998886 589999999999987543           23588999999988


Q ss_pred             eecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeec
Q 007047          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  528 (620)
Q Consensus       450 ~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~  528 (620)
                      .+              |||+++|+.++.||+++++.+  .| .+|||+|||+|++ +||++++.||.||+||+ +|++|+
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~  267 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVL  267 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEEC
Confidence            43              999999999999999988744  34 6789999999999 89999999999999997 899999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCC
Q 007047          529 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  605 (620)
Q Consensus       529 p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  605 (620)
                      |.+||++|.+||.|.+|+|++.+++   +.++|+++.+++.-                ....++++++.+.++.+..|.+
T Consensus       268 p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~----------------~~~~~i~~~~~~~l~~~~~P~~  331 (358)
T PRK07824        268 PQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA----------------PTLEALRAHVARTLDRTAAPRE  331 (358)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC----------------cCHHHHHHHHHhhCccccCCCE
Confidence            9999999999999999999997654   47888887643210                0112566677777777777777


Q ss_pred             CccCCccccc
Q 007047          606 VIFANWDTGC  615 (620)
Q Consensus       606 ~~~~~~~~~~  615 (620)
                      +.+++-.|++
T Consensus       332 i~~v~~lP~t  341 (358)
T PRK07824        332 LHVVDELPRR  341 (358)
T ss_pred             EEEecCCCCC
Confidence            7777666644

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=8.5e-35  Score=300.50  Aligned_cols=281  Identities=18%  Similarity=0.153  Sum_probs=215.9

Q ss_pred             CCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCC--CCCcEEEEecChhHHHHHH-HHHHHhhcCcEEEE
Q 007047          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRV-IEEYFFRRGASVGY  296 (620)
Q Consensus       220 ~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~v~  296 (620)
                      +..++++|||||||.||+|++||+++...+..+...+     +.  +..+++++.+|++|.+++. ..+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4578999999999999999999999998887766554     44  3446899999999998875 46678889999988


Q ss_pred             ecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHH
Q 007047          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (620)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (620)
                      ... ++..+++.++.+  |+++++|++++.+.+..    .                                     ++ 
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~-------------------------------------~l-  205 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y-------------------------------------RL-  205 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c-------------------------------------CC-
Confidence            765 777788777653  89999999999875420    0                                     01 


Q ss_pred             HHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCC
Q 007047          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE  454 (620)
Q Consensus       376 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~  454 (620)
                             ++++. ++||+++++++.+.+++. + ..+++.||+||++++.+...+      +..|.+.|++++++ +  +
T Consensus       206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~-~--~  267 (386)
T TIGR02372       206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFA-D--T  267 (386)
T ss_pred             -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccC-C--C
Confidence                   26675 678999999999999875 5 469999999999876543321      34567777766543 1  1


Q ss_pred             CCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHH
Q 007047          455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (620)
Q Consensus       455 ~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~  534 (620)
                      +.          +   .|+                  ..|++|||++++|++|+|+|+||+||+||+ +|++|+|.+||+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~  315 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD  315 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence            10          0   011                  126899999999999999999999999997 899999999999


Q ss_pred             HHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007047          535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       535 ~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  614 (620)
                      +|.+||+|.+|+|...  .+.+.|+|+++++.-.+-              ...++++++.++++.+..|..+.+++..|+
T Consensus       316 ~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~~~~~--------------~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~  379 (386)
T TIGR02372       316 ILERNPRVRAAAVRLD--GRRLKAFIVVAEDADEAE--------------LEIELRATAARHLPAPARPDRFRFGTELPR  379 (386)
T ss_pred             HHHcCCCceEEEEEcC--CceEEEEEEECCCCChHH--------------HHHHHHHHHHHhCCCCCCCcEEEEcccCCC
Confidence            9999999999998753  457889998864321000              012677888888888889999999888886


Q ss_pred             c
Q 007047          615 C  615 (620)
Q Consensus       615 ~  615 (620)
                      +
T Consensus       380 t  380 (386)
T TIGR02372       380 T  380 (386)
T ss_pred             C
Confidence            5

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=4e-32  Score=287.61  Aligned_cols=281  Identities=19%  Similarity=0.175  Sum_probs=206.6

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH-HHHHHHHhhcCcEEE
Q 007047          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVG  295 (620)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g-~~~~~~~l~~G~~~v  295 (620)
                      ..+++++++++||||||.||++.+||.++..........+.+  .++.++|++++..+..+..+ +...+.++..|++++
T Consensus        72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  149 (422)
T TIGR02155        72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVV  149 (422)
T ss_pred             CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEE
Confidence            356678999999999999999999999987665443322211  26778899888766543333 223445677899988


Q ss_pred             EecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhH
Q 007047          296 YYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF  374 (620)
Q Consensus       296 ~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  374 (620)
                      ..+. +++.+++.|++++||+++++|+++..|++.+........                                    
T Consensus       150 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~------------------------------------  193 (422)
T TIGR02155       150 PISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA------------------------------------  193 (422)
T ss_pred             ecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc------------------------------------
Confidence            7664 789999999999999999999999998764332100000                                    


Q ss_pred             HHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCC--ceeeccCCCccccCccccCc--cCeeEEEe
Q 007047          375 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG--PTTVCFPDEMCMVGTAGPVS--VYSELRLE  450 (620)
Q Consensus       375 ~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~--~~~~~~~~~~~~~~~~G~~~--~~~~i~i~  450 (620)
                             ..++|.+++||+++++++.+.+++.||+++++.||+||+++  +...+..      ...|.++  ++..++|+
T Consensus       194 -------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eiv  260 (422)
T TIGR02155       194 -------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEII  260 (422)
T ss_pred             -------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc------cCCCceEecCeeEEEEE
Confidence                   02799999999999999999999999999999999999853  2222211      1112232  35677888


Q ss_pred             ecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC-C-----cEEEeecccCeEEcCCc
Q 007047          451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQG  524 (620)
Q Consensus       451 ~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d-G-----~l~~~GR~~d~i~~~~G  524 (620)
                      | ++++ .++++|+.|||++++.            +.++|+.+||+|||+++++++ |     .+++.||.||+|++ +|
T Consensus       261 d-~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G  325 (422)
T TIGR02155       261 D-PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RG  325 (422)
T ss_pred             C-CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CC
Confidence            8 4333 4556789999999873            344566789999999999876 4     47899999999997 69


Q ss_pred             eeeccHHHHHHHhcCcCcc-eEEEEecCC--CceEEEEEEcC
Q 007047          525 EYVALEYLENVYCVAPIIE-DIWVYGDSL--KSMLVAVVVPC  563 (620)
Q Consensus       525 ~~v~p~~iE~~l~~~p~V~-~~~V~~~~~--~~~~~a~vv~~  563 (620)
                      .+|+|.+||++|.+||+|. ++.++....  .+.+.+.|++.
T Consensus       326 ~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~  367 (422)
T TIGR02155       326 VNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELK  367 (422)
T ss_pred             EEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence            9999999999999999998 444443221  23666666664

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.96  E-value=9.4e-27  Score=247.39  Aligned_cols=455  Identities=15%  Similarity=0.135  Sum_probs=315.0

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      .+|.++|+.+++.+||.+|+...   +..+....++||++|.+++.+++.+|... -+++||.|+++++++.|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            78999999999999999999987   66666678999999999999999999966 699999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCCh------hHHHHHHhhcCccEEEEcchhHHHhcccccccc---cCccEEEEecCCcHHHHHHHh
Q 007047          121 CNALSLICVPLYDTLGP------GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      |+.+|.+++|+.|....      ..+..+++..++..|+++......+.+.-....   .-...++.+++...       
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-------  919 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-------  919 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence            99999999999876543      367889999999999999876654432211100   11222222222211       


Q ss_pred             hcCCceeeHHHHHhcCcc--CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEE
Q 007047          192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (620)
                             +|..-.+.-..  ...++....++.+|++-+.--++|.-.++.++|.++++.+....+.+     .+.+..-+
T Consensus       920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl  987 (1363)
T KOG3628|consen  920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL  987 (1363)
T ss_pred             -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence                   01111111101  12233345678899999999999999999999999999999999988     77777777


Q ss_pred             EEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007047          270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (620)
Q Consensus       270 ~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (620)
                      +...+.+.+.|+. .++..+++|...++.++     ++..|+..++++++.=++.+-..+....+.+....+......  
T Consensus       988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~g-- 1065 (1363)
T KOG3628|consen  988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRG-- 1065 (1363)
T ss_pred             EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhh--
Confidence            7788888777776 46778999999888764     899999999999987777766666665543333222221100  


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc---C---CeeEeecCC
Q 007047          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---C---AFLVQGYGL  417 (620)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~---~~v~~~YG~  417 (620)
                                                  .+.         +...++..-+.....+...|.+.|   |   ..+.-.|++
T Consensus      1066 ----------------------------nn~---------s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1066 ----------------------------NNT---------SSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred             ----------------------------ccc---------ccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence                                        000         112233333343344444444333   1   112223322


Q ss_pred             CCCCCceeecc---C---------------------C--CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEe
Q 007047          418 TETCGPTTVCF---P---------------------D--EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (620)
Q Consensus       418 TE~~~~~~~~~---~---------------------~--~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~  471 (620)
                      -=--.++....   +                     .  ..-.....|...+++++.|++ ++.. .|+.+|+.||||+.
T Consensus      1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~ 1186 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVN 1186 (1363)
T ss_pred             cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEec
Confidence            11111111100   0                     0  000113457888999999999 6555 67888999999999


Q ss_pred             cCCcccccCCChhh-hhccc----------cCCcccccceEEEcc------C----CcEEEeecccCeEEcCCceeeccH
Q 007047          472 GKTLFSGYYKNPDL-TRESI----------IDGWFHTGDIGQILP------N----GVVKIIDRKKNLIKISQGEYVALE  530 (620)
Q Consensus       472 g~~v~~gy~~~~~~-t~~~~----------~dgw~~TGDl~~~~~------d----G~l~~~GR~~d~i~~~~G~~v~p~  530 (620)
                      |.+.+.+|++..+. ....|          ..+|-||||+|++..      .    .-||++|-.++.+.+ +|.+.+|.
T Consensus      1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~ 1265 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPS 1265 (1363)
T ss_pred             cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcc
Confidence            99998887754222 11112          134999999999842      2    359999999999999 79999999


Q ss_pred             HHHHHH-hcCcCcceEEEEecCCCceEEEEEEc
Q 007047          531 YLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVP  562 (620)
Q Consensus       531 ~iE~~l-~~~p~V~~~~V~~~~~~~~~~a~vv~  562 (620)
                      +||..+ +.||.|.+|+|+.-.  ..++.+|..
T Consensus      1266 DIE~TV~~vH~~I~~cavF~~~--glvVvviE~ 1296 (1363)
T KOG3628|consen 1266 DIETTVERVHPSIGGCAVFQAT--GLVVVVIEC 1296 (1363)
T ss_pred             hHHHHHHHhcccccceeeEeeC--CeEEEEEEe
Confidence            999999 699999999999865  244444444

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.94  E-value=4.6e-26  Score=241.52  Aligned_cols=261  Identities=17%  Similarity=0.124  Sum_probs=186.9

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEE
Q 007047          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVG  295 (620)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v  295 (620)
                      ...++++.+.+||||||.||+|.+||.++..........+..  .++.++|+++...+..+..+... ...++..|++++
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi  160 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII  160 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence            356788999999999999999999999998776554433211  26788899999988877655443 445677888765


Q ss_pred             EecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHH
Q 007047          296 YYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (620)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (620)
                      ... .....++.++++++|.+.++|+.+..+.+.+........                                     
T Consensus       161 ~~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~-------------------------------------  202 (445)
T TIGR03335       161 PEG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA-------------------------------------  202 (445)
T ss_pred             cCC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence            433 445678899999999999999998877654332110000                                     


Q ss_pred             HHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCC
Q 007047          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM  455 (620)
Q Consensus       376 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~  455 (620)
                            ..++|.+++||+++++++.+++++.||+++++.||+||++. +..+...     .....+.+.+.++|+| +++
T Consensus       203 ------~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~~-----~g~h~~~d~~~vEIvD-p~~  269 (445)
T TIGR03335       203 ------ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQAV-----AGLHVPEDLVHLDVYD-PRH  269 (445)
T ss_pred             ------cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecCC-----CCccccCCceEEEEEc-CCC
Confidence                  02899999999999999999999989999999999999863 3333211     1122333467889998 554


Q ss_pred             CCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc-C----C----cEEEeecccCeEEcCCcee
Q 007047          456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIKISQGEY  526 (620)
Q Consensus       456 ~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~-d----G----~l~~~GR~~d~i~~~~G~~  526 (620)
                      + .++++|+.|||++++-.....        .+.++==-|+|||++++.. +    |    .+...||.||++++ +|.+
T Consensus       270 ~-~~vp~Ge~GELvvT~L~~~~~--------r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~  339 (445)
T TIGR03335       270 Q-RFLPDGECGRIVLTTLLKPGE--------RCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVP  339 (445)
T ss_pred             C-CCCcCCCceEEEEEecCCCCc--------cCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEE
Confidence            4 566788999999988432100        0000000289999999732 2    2    14457999999999 6999


Q ss_pred             eccHHHHHHHhcCc
Q 007047          527 VALEYLENVYCVAP  540 (620)
Q Consensus       527 v~p~~iE~~l~~~p  540 (620)
                      |+|.+||++|.+++
T Consensus       340 ~~p~~ie~~l~~~~  353 (445)
T TIGR03335       340 FNRVDVERAVFQRE  353 (445)
T ss_pred             eCHHHHHHHHhccC
Confidence            99999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.94  E-value=3.5e-25  Score=212.02  Aligned_cols=223  Identities=15%  Similarity=0.035  Sum_probs=164.5

Q ss_pred             HHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHhHHHHHHHHHhCCC
Q 007047           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (620)
Q Consensus        48 l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~  126 (620)
                      |...++++|+++|+++.   ++..++.+++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999865   3322123579999999999999999998 7999999999999999999999999999999


Q ss_pred             EEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHhc
Q 007047          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  206 (620)
Q Consensus       127 v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  206 (620)
                      +++|++             ++++++++++.+.......      .  +.++.+......... ......+..+|.+.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAAG------S--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhccc------C--CceEEEeccccccCC-CCCCCCcccchhhhhhc
Confidence            999995             6789999999887665321      1  222332110000000 00001123456655543


Q ss_pred             CccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HH
Q 007047          207 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE  285 (620)
Q Consensus       207 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~  285 (620)
                      ......+.....++|++.++||||+         +|++++...    ..+     +++++|+++ .+|++|.+|+.. ++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            2222221214567999999999986         666666654    223     788999999 999999999864 67


Q ss_pred             HHhhcCcEEEEecC-ChHHHHHHHhhcCCc
Q 007047          286 YFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (620)
Q Consensus       286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (620)
                      .++..|+++++.+. ++..+++.|+++++|
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            78999999999876 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=8.5e-25  Score=240.52  Aligned_cols=469  Identities=19%  Similarity=0.137  Sum_probs=288.1

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      +.++...+.+.+..+|.+.+..+.+. ....+....+||+.....++.+++.|.+.|...|+.|++++..+.++++..++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~  113 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA  113 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence            45667788999999999998887643 23455567899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCC----hhH---HHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhc
Q 007047          121 CNALSLICVPLYDTLG----PGA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~----~~~---l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (620)
                      .+++|..+++++|.++    .+.   +.+.+......++.-......     ....           ...          
T Consensus       114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~-----~~~~-----------~~~----------  167 (1032)
T KOG1178|consen  114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDI-----LLNS-----------LFP----------  167 (1032)
T ss_pred             hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHH-----Hhhc-----------ccc----------
Confidence            9999999999999999    221   111111111111100000000     0000           000          


Q ss_pred             CCceeeHHHHHhcCcc-Cc-ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEE
Q 007047          194 GIKPYSWDEFLHLGKV-NE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (620)
Q Consensus       194 ~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~  271 (620)
                      ...+....+.+..... .. ....-..++..+++.||||+||.||+|.-+|..+.+........+     ..+..+++-.
T Consensus       168 ~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~  242 (1032)
T KOG1178|consen  168 KLSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTF  242 (1032)
T ss_pred             ccchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhh
Confidence            0000000111111101 11 111233567789999999999999999999999999887765554     5666666421


Q ss_pred             ecCh-hHHHHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          272 FLPL-AHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       272 ~~pl-~h~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      .... ++..-.......+..|+.+..+..    ++..+...+++++++.++.+|++.+.++............   .   
T Consensus       243 ~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~---~---  316 (1032)
T KOG1178|consen  243 KTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEH---A---  316 (1032)
T ss_pred             hheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhh---h---
Confidence            2222 121111223344666666655533    4899999999999999999999988887543321100000   0   


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCcee
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTT  425 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~  425 (620)
                             ..+            -+.  ..+     -+.|+...++|+++...+...+.+.+ -.-...-|++++..+..+
T Consensus       317 -------~~~------------~dl--~~~-----~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s  370 (1032)
T KOG1178|consen  317 -------FSL------------SDL--LTK-----RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVS  370 (1032)
T ss_pred             -------hhc------------ccc--ccc-----chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCcccee
Confidence                   000            000  000     03789999999999999888555444 122223388988877665


Q ss_pred             eccCCCcc---ccCccccCc-------cCeeEEEeecCCCCCC--CCCCCCCceEEEecCCcccccCCChhhhhccc--c
Q 007047          426 VCFPDEMC---MVGTAGPVS-------VYSELRLEEVPEMGYS--PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--I  491 (620)
Q Consensus       426 ~~~~~~~~---~~~~~G~~~-------~~~~i~i~~~~~~~~~--~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~--~  491 (620)
                      ...-....   ....+..+.       +...+.+.. ..+.+.  +++.++-|..+..+..+..| +..++.....+  .
T Consensus       371 ~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~  448 (1032)
T KOG1178|consen  371 YDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTV  448 (1032)
T ss_pred             HHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCccccc
Confidence            43221100   000010000       012222222 111111  11111222222233334444 23333332222  2


Q ss_pred             ----CCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          492 ----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       492 ----dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                          +..|+|||+|+..++|.+.+.||.|++||+ +|.++...+|+.++..||.|.++.+....+.   +.++|||++..
T Consensus       449 d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~  527 (1032)
T KOG1178|consen  449 DGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERG  527 (1032)
T ss_pred             ccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccC
Confidence                348999999999999999999999999997 6999999999999999999999998875543   47899999742


Q ss_pred             -------HHHHHHHHHCCC
Q 007047          565 -------EDTKKWAYSNGH  576 (620)
Q Consensus       565 -------~~~~~~~~~~~~  576 (620)
                             ..++.|++.+++
T Consensus       528 ~~~~~~~~~i~~~l~~~La  546 (1032)
T KOG1178|consen  528 GSKSVLIRDIRNYLKKELA  546 (1032)
T ss_pred             CCCchhHHHHHHhhccccc
Confidence                   346666666555

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.91  E-value=1.8e-22  Score=202.97  Aligned_cols=284  Identities=22%  Similarity=0.212  Sum_probs=209.7

Q ss_pred             CCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh-HHHHHHHHHHHhhcCcEE
Q 007047          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASV  294 (620)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~-h~~g~~~~~~~l~~G~~~  294 (620)
                      ...-++...+-.||||||+|+-+.+|+..+...+..+.+.+..  .+...+|++..+.-.. +..|+.....+--.|+++
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~--~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v  163 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYS--AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV  163 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHH--ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence            3455667779999999999999999999999888877776532  3677888877665522 112222333444466665


Q ss_pred             EEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHh
Q 007047          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (620)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (620)
                      +=... +.+..+.+++.+++|++.++|+.+..+++.+.+......                                .  
T Consensus       164 ip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~--------------------------------~--  209 (438)
T COG1541         164 IPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD--------------------------------K--  209 (438)
T ss_pred             EccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh--------------------------------h--
Confidence            55544 889999999999999999999999999887665431000                                0  


Q ss_pred             HHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCce-eeccCCCccccCccccCccCeeEEEeec
Q 007047          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (620)
Q Consensus       374 l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~-~~~~~~~~~~~~~~G~~~~~~~i~i~~~  452 (620)
                               .++|.+++|+|++++++.+.+.+.||+.+++.||+||..+.. ..|...     ......-+..-++|+| 
T Consensus       210 ---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~-----~glhi~eD~~~~Ei~d-  274 (438)
T COG1541         210 ---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER-----NGLHIWEDHFIFEIVD-  274 (438)
T ss_pred             ---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc-----cCCCcchhhceeeeec-
Confidence                     289999999999999999999999999999999999997763 333322     1122334567888999 


Q ss_pred             CCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC----C-----cEEEeecccCeEEcCC
Q 007047          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----G-----VVKIIDRKKNLIKISQ  523 (620)
Q Consensus       453 ~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d----G-----~l~~~GR~~d~i~~~~  523 (620)
                      |+.+ .++++|+.|||+++.-.       +     ++++==-|+|||+..+.++    |     .-.+.||.||++++ .
T Consensus       275 P~t~-e~l~dge~GelV~T~L~-------~-----~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~  340 (438)
T COG1541         275 PETG-EQLPDGERGELVITTLT-------K-----EGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-R  340 (438)
T ss_pred             CCcC-ccCCCCCeeEEEEEecc-------c-----cCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-C
Confidence            5544 56667789999998732       1     1111112899999999764    2     25789999999999 5


Q ss_pred             ceeeccHHHHHHHhcCcCcc---eEEEEecCCCceEEEEEEcCh
Q 007047          524 GEYVALEYLENVYCVAPIIE---DIWVYGDSLKSMLVAVVVPCE  564 (620)
Q Consensus       524 G~~v~p~~iE~~l~~~p~V~---~~~V~~~~~~~~~~a~vv~~~  564 (620)
                      |.+|+|.+||.+|.+.+.+.   ++++...+..+.+.+.|...+
T Consensus       341 G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~  384 (438)
T COG1541         341 GVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN  384 (438)
T ss_pred             CEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence            99999999999999999998   555555333457777777754

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.75  E-value=3.6e-17  Score=175.15  Aligned_cols=444  Identities=13%  Similarity=0.099  Sum_probs=293.8

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHH-HHHHCCCCCCCEEEEEcCCc--HhHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWVEA  117 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~-~L~~~gv~~gd~V~i~~~n~--~e~~~~  117 (620)
                      +..+..+++.+-..++...|.++.   |.++. ...+||..+..++.+.|+ .|-+.|+.++|+|.++...+  .|+++.
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~is  168 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLIS  168 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhh
Confidence            345666677666778888899887   76555 789999999999999999 56677999999999999887  799999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHH-HHHHHhhcCC-
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE-QKEMAVQTGI-  195 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-~~~~~~~~~~-  195 (620)
                      .++|+.+|.+.+|+++.++.+++..+++....+++++.............             +.... .-.+...... 
T Consensus       169 l~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~-------------~~s~~k~v~~w~t~~~k  235 (1363)
T KOG3628|consen  169 LFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNS-------------PVSLAKAVAWWKTNDFK  235 (1363)
T ss_pred             hccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccC-------------cccHHHHHHhhhccccc
Confidence            99999999999999999999999999999999999998766543321110             00000 0000000000 


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccc---------------cc
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---------------FE  260 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~---------------~~  260 (620)
                      +.+..+         ........-. .++|-||++++|.--|++.+|. ++.+.+.+......               ..
T Consensus       236 ~~~~~~---------k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v  304 (1363)
T KOG3628|consen  236 GNYTKD---------KIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV  304 (1363)
T ss_pred             ceeehh---------hccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence            011111         1111122222 8999999999999999999998 55555443322111               11


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHH
Q 007047          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (620)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (620)
                      .+....++++.-+.+....|+++ ++.++++|.+...++.    .+..+...+.+++.+++..--..+............
T Consensus       305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~  384 (1363)
T KOG3628|consen  305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK  384 (1363)
T ss_pred             cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc
Confidence            23456677777777777778775 6778999999888775    678899999999999988876555554332211100


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc----C---
Q 007047          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----C---  408 (620)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~----~---  408 (620)
                      ...                          .-...+..++        +++|.+.+.-..++.+...-..+.+    |   
T Consensus       385 a~~--------------------------s~~k~~t~d~--------sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~  430 (1363)
T KOG3628|consen  385 ATL--------------------------SFKKYKTPDL--------SSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN  430 (1363)
T ss_pred             ccc--------------------------chhhccCCCc--------cceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence            000                          0000111233        4999999999999988765443332    1   


Q ss_pred             ---------------CeeEeecCCCCCCCceeeccCCCc-----------------------------cccCccccCccC
Q 007047          409 ---------------AFLVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSVY  444 (620)
Q Consensus       409 ---------------~~v~~~YG~TE~~~~~~~~~~~~~-----------------------------~~~~~~G~~~~~  444 (620)
                                     .-....=+++|.+......+....                             .....+|...||
T Consensus       431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g  510 (1363)
T KOG3628|consen  431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG  510 (1363)
T ss_pred             cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence                           112222333455443333222000                             012345666666


Q ss_pred             -eeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc------C-------CcccccceEEEccCCcEE
Q 007047          445 -SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------D-------GWFHTGDIGQILPNGVVK  510 (620)
Q Consensus       445 -~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~------d-------gw~~TGDl~~~~~dG~l~  510 (620)
                       +.+.+++  ++....+.++++|||||.++.+..+||.-+..|...|.      .       -+.|||-+|++. +|.++
T Consensus       511 ~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~  587 (1363)
T KOG3628|consen  511 DATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIY  587 (1363)
T ss_pred             ceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEE
Confidence             3344444  55556777889999999999999999999988887772      1       278999999996 55677


Q ss_pred             EeecccCeEEcCCceeeccHH----------HHHHHhcCcCcceEEEEe
Q 007047          511 IIDRKKNLIKISQGEYVALEY----------LENVYCVAPIIEDIWVYG  549 (620)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~p~~----------iE~~l~~~p~V~~~~V~~  549 (620)
                      |+|-++|++.--.|...+..+          |+-+.+..+.|-++.|+.
T Consensus       588 vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~  636 (1363)
T KOG3628|consen  588 VLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE  636 (1363)
T ss_pred             EEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee
Confidence            777666665432355554433          566667788999999987

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.72  E-value=2.7e-15  Score=155.64  Aligned_cols=258  Identities=16%  Similarity=0.154  Sum_probs=164.9

Q ss_pred             eEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhc-CcEEEEec-
Q 007047          222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRR-GASVGYYH-  298 (620)
Q Consensus       222 ~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~l~~-G~~~v~~~-  298 (620)
                      -..+..||||||.|-.+.++..............+.+.  ++..++++..++.- .+.+..      +.. ...+...+ 
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~--g~~~g~r~a~~~~~~~~ly~~------~~~~~~~~~~~~l  172 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPD--GLFAKHRIAFFLRADNNLYQS------VNNRWISLDFFDL  172 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcc--ccccCCcEEEEEccChhHHHH------HHhccceeeecCC
Confidence            35577899999999999999887755544433222121  34444555444211 121211      111 11122222 


Q ss_pred             -CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHH
Q 007047          299 -GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV  377 (620)
Q Consensus       299 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  377 (620)
                       .+.+.+++.|++++|+++.+.|+.+..|++.+.+....                                         
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-----------------------------------------  211 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-----------------------------------------  211 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-----------------------------------------
Confidence             37899999999999999999999999998755432100                                         


Q ss_pred             HHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEE--EeecCCC
Q 007047          378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR--LEEVPEM  455 (620)
Q Consensus       378 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~--i~~~~~~  455 (620)
                           .+++.++++||.++++..+.+++.||++|++.||+|| |.++..|..      +.+..--..+-++  ++| +++
T Consensus       212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~------g~lHl~ed~~~vE~~ivD-~~~  278 (430)
T TIGR02304       212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRC------GTLHLNEDLVHIEKQYLD-EHK  278 (430)
T ss_pred             -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCC------CCEEEccccEEEEeeEEC-CCC
Confidence                 1689999999999999999999999999999999999 555554432      2222222233344  666 332


Q ss_pred             CCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC----Cc----E-EEeecccCeEEc--CCc
Q 007047          456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQG  524 (620)
Q Consensus       456 ~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d----G~----l-~~~GR~~d~i~~--~~G  524 (620)
                               .+..+|++-.      +.      +++==-|+|||++.+.++    |.    + .+.||.+|++++  .+|
T Consensus       279 ---------~~~~ViT~L~------n~------~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G  337 (430)
T TIGR02304       279 ---------RFVPIITDFT------RT------TQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSG  337 (430)
T ss_pred             ---------ceEEEEecCC------Cc------cceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCC
Confidence                     1344555421      10      000002899999988544    32    3 488999999984  356


Q ss_pred             eee--ccHHHHHHH-hcCcCcceEEEEecCCCceEEEEEEcC
Q 007047          525 EYV--ALEYLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPC  563 (620)
Q Consensus       525 ~~v--~p~~iE~~l-~~~p~V~~~~V~~~~~~~~~~a~vv~~  563 (620)
                      ..+  +|..++.++ ...+.|.+..++... .+.+...+++.
T Consensus       338 ~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~  378 (430)
T TIGR02304       338 DEQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCE  378 (430)
T ss_pred             CeEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeC
Confidence            554  888898885 467899999888765 44455555554

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.47  E-value=7.6e-14  Score=141.50  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             ccCCcccccceEEE-ccCCcEEEeecccCeEEcCCc---eeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc
Q 007047          490 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (620)
Q Consensus       490 ~~dgw~~TGDl~~~-~~dG~l~~~GR~~d~i~~~~G---~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~  562 (620)
                      +.||||+|||+|++ |+||+|+|.||.|      +|   +||+|. ||++|.+||+|.+|+|+|.+++   +.++|+|++
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~  278 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA  278 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence            46999999999998 7999999999997      57   899999 9999999999999999997765   589999986


Q ss_pred             C----hHHHHHHHHHC
Q 007047          563 C----EEDTKKWAYSN  574 (620)
Q Consensus       563 ~----~~~~~~~~~~~  574 (620)
                      .    .+++.+|++++
T Consensus       279 ~~~~~~~el~~~l~~~  294 (365)
T PRK09188        279 ELPADEKSLRARLAGA  294 (365)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            4    24455555444

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.98  E-value=6.2e-08  Score=98.65  Aligned_cols=234  Identities=18%  Similarity=0.207  Sum_probs=137.1

Q ss_pred             CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCC-CCcEEEEecChhH---HHHH--HHHHHHhhcC
Q 007047          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFLPLAH---ILDR--VIEEYFFRRG  291 (620)
Q Consensus       218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~~~~~pl~h---~~g~--~~~~~~l~~G  291 (620)
                      .++++..++.||||||.|--+.+.+..+..+...+...+.... +.. ..-.++...|-..   ..+.  ...+..+..+
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~-~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFL-GPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhc-ccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            4566788999999999987677776666665544443332111 122 1223333333321   1111  1122233445


Q ss_pred             cEEEEecC---ChHHHHHHH----hhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCC
Q 007047          292 ASVGYYHG---DLNALRDDL----MELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  364 (620)
Q Consensus       292 ~~~v~~~~---~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (620)
                      .. .+...   +.+.+...+    .+.++..+++.|.++-.+...+.+......                          
T Consensus       166 ~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~--------------------------  218 (365)
T PF04443_consen  166 SR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR--------------------------  218 (365)
T ss_pred             ce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc--------------------------
Confidence            55 34332   566555555    356788899999877766654443321111                          


Q ss_pred             chhHHHHHhHHHHHHHcCCcEEEEEeec------CCCCH-HHHHHHHHhcCC----eeEeecCCCCCCCceeeccCCCcc
Q 007047          365 ASPLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       365 ~~~~~~~~~l~~~~~~~~~~lr~i~~gG------~~l~~-~~~~~~~~~~~~----~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                               +       .+..+.+-.||      +.+++ +..+.+++.||+    .+++.||+||.......+..    
T Consensus       219 ---------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~----  278 (365)
T PF04443_consen  219 ---------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH----  278 (365)
T ss_pred             ---------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC----
Confidence                     0       02445666665      45765 466678888887    69999999998765444422    


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC-------
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-------  506 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d-------  506 (620)
                        +.  .+.|.. +.|.| ++ +..+++.|+.|-|.+-.+... .|            -+..-|.|+|.+..+       
T Consensus       279 --~~--~~~p~w-V~iRD-p~-tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~  338 (365)
T PF04443_consen  279 --GH--FHVPPW-VIIRD-PE-TLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRK  338 (365)
T ss_pred             --Cc--ccCCCe-EEEEC-CC-CCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCcc
Confidence              11  122323 66667 44 356788889999998776542 11            123569999988654       


Q ss_pred             -CcEEEeecccCeE
Q 007047          507 -GVVKIIDRKKNLI  519 (620)
Q Consensus       507 -G~l~~~GR~~d~i  519 (620)
                       .++.++||.+.-=
T Consensus       339 g~~f~vlGR~~~ae  352 (365)
T PF04443_consen  339 GKYFEVLGRADGAE  352 (365)
T ss_pred             CCEEEEEeCCCCCc
Confidence             2799999988544

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.35  E-value=8e-06  Score=88.20  Aligned_cols=158  Identities=19%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             CcEEEEEeecCCCCHHHHHHHHHhcC--CeeEeecCCCCCCCceeeccCCCccccCccccCccC-eeEEEeecCCCC---
Q 007047          383 GRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY-SELRLEEVPEMG---  456 (620)
Q Consensus       383 ~~lr~i~~gG~~l~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~-~~i~i~~~~~~~---  456 (620)
                      ++|+++.+-+..-...-...+++.+|  ..+..+|++||+-+  +......    ...+.+.++ .-++.++.++..   
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i--~i~~~~~----~~~~~l~~~~~ffEFip~~~~~~~~  340 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI--GIPLDPE----DPGYVLAPDSGFFEFIPVDEDEQNP  340 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE--EEES-CC----C--EEE-TTSSEEEEEE-STT----
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE--EEecCCC----CCceEeecCCeEEEEEeccCCcccc
Confidence            58886665544444455566666664  34568999999633  3322111    111222222 234555533322   


Q ss_pred             ---CCC-----CCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc--CC--cEEEeecccCeEEcCCc
Q 007047          457 ---YSP-----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQG  524 (620)
Q Consensus       457 ---~~~-----~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~--dG--~l~~~GR~~d~i~~~~G  524 (620)
                         ...     +..|+.-||+|+..   .|.|+             |+.||++++..  ++  .+.|+||.+.++.+ .|
T Consensus       341 ~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g  403 (528)
T PF03321_consen  341 SEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG  403 (528)
T ss_dssp             ---SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred             cCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence               111     12466778888764   33332             89999999853  34  69999999999998 69


Q ss_pred             eeeccHHHHHHHhcC-----cCcceEEEEecC---CCceEEEEEEcC
Q 007047          525 EYVALEYLENVYCVA-----PIIEDIWVYGDS---LKSMLVAVVVPC  563 (620)
Q Consensus       525 ~~v~p~~iE~~l~~~-----p~V~~~~V~~~~---~~~~~~a~vv~~  563 (620)
                      ++++-.+|++++.+.     -.+.+-++..+.   ....-+.++.++
T Consensus       404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~  450 (528)
T PF03321_consen  404 EKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE  450 (528)
T ss_dssp             --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred             eecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence            999999999999654     344566666552   234555566554

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=98.16  E-value=0.00015  Score=77.84  Aligned_cols=137  Identities=13%  Similarity=0.026  Sum_probs=80.9

Q ss_pred             CcEEEEEeecCCCCHHHHHHHHHhc-CCee-EeecCCCCCCCceeeccCCCccccCccccCccCee-EEEeecCCCCC--
Q 007047          383 GRLRLVISGGAPLSTEVEEFLRVTC-CAFL-VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEMGY--  457 (620)
Q Consensus       383 ~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v-~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~-i~i~~~~~~~~--  457 (620)
                      +++++|.+-...-...-...++..+ |+++ --.|++||+-+.+-..+..++.  ......+|+.. ++.+++++++.  
T Consensus       304 P~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~--~~sy~L~p~~~yFEFip~~~~~~~~  381 (612)
T PLN02620        304 PNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPS--EVSYTLIPTMAYFEFLPVHRNNGVT  381 (612)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCcc--cceeeecCCcEEEEEeeccCccccc
Confidence            6888877654444444445555444 5654 4799999974433333321111  11222334432 34443222110  


Q ss_pred             -----------------C---CCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEc----cCCcEEEee
Q 007047          458 -----------------S---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGVVKIID  513 (620)
Q Consensus       458 -----------------~---~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~----~dG~l~~~G  513 (620)
                                       .   .+..|+.-||+|+.   +.|.|+             ||.||+.++.    ..-.+.|++
T Consensus       382 ~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~~~Fv~  445 (612)
T PLN02620        382 NSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFSFIC  445 (612)
T ss_pred             ccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCceEEEEe
Confidence                             0   02346677888865   223221             8999998884    345799999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhc
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCV  538 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~  538 (620)
                      |.+-+..+ .|+|++-.++-.++.+
T Consensus       446 R~~~~lsi-~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        446 RKNVVLSI-DSDKTDEVELQNAVKN  469 (612)
T ss_pred             ecCceeec-ccccCCHHHHHHHHHH
Confidence            99999998 7999999888777743

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.12  E-value=9.9e-05  Score=79.99  Aligned_cols=131  Identities=15%  Similarity=0.135  Sum_probs=78.8

Q ss_pred             EEEEEeecCCCCHHHHHHHHHhc-C-CeeEeecCCCCCCCceeeccCCCccccCccccC--ccCeeEEEeecCCCCC---
Q 007047          385 LRLVISGGAPLSTEVEEFLRVTC-C-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--SVYSELRLEEVPEMGY---  457 (620)
Q Consensus       385 lr~i~~gG~~l~~~~~~~~~~~~-~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~--~~~~~i~i~~~~~~~~---  457 (620)
                      +..+..||..   .-...++..+ + ..+...|++||+-+.+-..+....   ...+..  +.+.-++.++.++.+.   
T Consensus       307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p---~~~~~~l~~~~~ffEFiP~~~~~~~~~  380 (597)
T PLN02249        307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKP---SEVSYTIMPNMAYFEFLPHNHDGDGAL  380 (597)
T ss_pred             EEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCCC---CCcceEecCCcEEEEeeecccCCcccC
Confidence            6666677644   4444555545 3 346689999996433222111111   112211  2244455554322111   


Q ss_pred             ---CC-----CCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC----CcEEEeecccCeEEcCCce
Q 007047          458 ---SP-----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKISQGE  525 (620)
Q Consensus       458 ---~~-----~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d----G~l~~~GR~~d~i~~~~G~  525 (620)
                         ..     +..|+.-|++|+..   .|.|+             |+.||..++..-    -.+.|+||.+..+.+ .|+
T Consensus       381 ~~~~~v~l~eVe~G~~Y~lVvTT~---~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GE  443 (597)
T PLN02249        381 DETSLVELADVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESD  443 (597)
T ss_pred             CCCcEecHHHcCCCCeEEEEEEcc---cceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcceec-ccc
Confidence               11     12456778888652   23332             899999999532    368999999999997 799


Q ss_pred             eeccHHHHHHHhc
Q 007047          526 YVALEYLENVYCV  538 (620)
Q Consensus       526 ~v~p~~iE~~l~~  538 (620)
                      ++.-.+++.++.+
T Consensus       444 Kl~e~~v~~Av~~  456 (597)
T PLN02249        444 KTDEADLQKAVEN  456 (597)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=98.03  E-value=0.00046  Score=74.30  Aligned_cols=137  Identities=14%  Similarity=0.083  Sum_probs=82.5

Q ss_pred             CcEEEEEeecCCCCHHHHHHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCccccCccCee-EEEeecCCCCCC-
Q 007047          383 GRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEMGYS-  458 (620)
Q Consensus       383 ~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~-i~i~~~~~~~~~-  458 (620)
                      +++++|.+--.--...-...++..+ |++++ -.||+||+-+.+-..+..++.  ......+|+.. ++.+++++++.. 
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~~~~~  370 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKNNGEV  370 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCCcccc
Confidence            6888877754444455555665544 56555 599999974433332221111  12223334433 344442322110 


Q ss_pred             --------------------------CCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEc----cCCc
Q 007047          459 --------------------------PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGV  508 (620)
Q Consensus       459 --------------------------~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~----~dG~  508 (620)
                                                .+..|+.-||+|+.   +.|.|+             ||.||+.++.    ..-.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n~~P~  434 (606)
T PLN02247        371 IHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFYNNAPQ  434 (606)
T ss_pred             cccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCce
Confidence                                      12245677888765   223221             8999998883    3457


Q ss_pred             EEEeecccCeEEcCCceeeccHHHHHHHhc
Q 007047          509 VKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (620)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~  538 (620)
                      +.|++|.+.+..+ .|+|++-.++-.++.+
T Consensus       435 ~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        435 FRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             EEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence            9999999999998 7999999988777754

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=97.69  E-value=2.1e-05  Score=60.50  Aligned_cols=57  Identities=23%  Similarity=0.229  Sum_probs=44.8

Q ss_pred             HHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCc
Q 007047          531 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVI  607 (620)
Q Consensus       531 ~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  607 (620)
                      |||++|.+||+|.+|+|++.+++   +.++|+|++.+                      .++++++..++++++.|+++.
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~~~----------------------~~i~~~~~~~l~~~~~P~~~~   58 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVLDE----------------------EEIRDHLRDKLPPYMVPRRIR   58 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEHH----------------------HHHHHHHHHHS-GGGS-SEEE
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEeee----------------------cccccchhhhCCCcceeeEEE
Confidence            79999999999999999997754   59999999911                      267777888888888886665


Q ss_pred             cC
Q 007047          608 FA  609 (620)
Q Consensus       608 ~~  609 (620)
                      ++
T Consensus        59 ~v   60 (73)
T PF13193_consen   59 FV   60 (73)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

...

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.34  E-value=0.35  Score=50.17  Aligned_cols=107  Identities=8%  Similarity=-0.028  Sum_probs=81.8

Q ss_pred             ceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccE
Q 007047           74 YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF  151 (620)
Q Consensus        74 ~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~  151 (620)
                      ..-+|+.|+...+..+|+.|...|..+||+|.+...-+.  .-+...+|+.++|+.++|+.+. .-+....++++.++.+
T Consensus       107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv  185 (438)
T COG1541         107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV  185 (438)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence            356899999999999999999999999999988877222  2267889999999999999884 3455667899999999


Q ss_pred             EEEcchhHHHhccccccc-----ccCccEEEEecC
Q 007047          152 VFVQDKKVKELLSPDCRS-----AQRLRVMVCFTS  181 (620)
Q Consensus       152 vi~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~  181 (620)
                      +.+.+.+.-.+.+.....     ...++.++....
T Consensus       186 I~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE  220 (438)
T COG1541         186 IAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAE  220 (438)
T ss_pred             EEEChHHHHHHHHHHHHcCCChhhcceeEEEEecc
Confidence            999998876554444333     234555555433

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=89.51  E-value=2  Score=34.72  Aligned_cols=41  Identities=17%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             ceeeccHHHHHHHhcCcCcc-eEEEE--ecCCCceEEEEEEcCh
Q 007047          524 GEYVALEYLENVYCVAPIIE-DIWVY--GDSLKSMLVAVVVPCE  564 (620)
Q Consensus       524 G~~v~p~~iE~~l~~~p~V~-~~~V~--~~~~~~~~~a~vv~~~  564 (620)
                      |.||+|.+||++|.++|++. +..++  ..++.+.+...|..++
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~   44 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRP   44 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEEST
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECC
Confidence            78999999999999999998 43332  2333457777777654

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=84.86  E-value=8.9  Score=40.92  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=67.1

Q ss_pred             CCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHh--HHHHHHHHHhCCCEEEecCCCCChhHHHHHH
Q 007047           69 GKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPLYDTLGPGAVNFIL  144 (620)
Q Consensus        69 ~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l  144 (620)
                      |.+|..  ..+|..++...+...+..+...|+.+||++.+..+.+..  .....+++..+|+.++|...   ......++
T Consensus        96 GTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i  172 (445)
T TIGR03335        96 GTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRII  172 (445)
T ss_pred             CCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHH
Confidence            444443  457889998888888888888899999999998876643  23456788999998877653   23445778


Q ss_pred             hhcCccEEEEcchhHHHh
Q 007047          145 DHAEIDFVFVQDKKVKEL  162 (620)
Q Consensus       145 ~~~~~~~vi~~~~~~~~~  162 (620)
                      +..++..++........+
T Consensus       173 ~~~~~t~l~~~ps~ll~L  190 (445)
T TIGR03335       173 ESYRPTGIVASVFKLLRL  190 (445)
T ss_pred             HHhCCCEEEECHHHHHHH
Confidence            899999998877654433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=84.60  E-value=8.4  Score=40.72  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=69.9

Q ss_pred             CCCCCCce--EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--hHHHHHHHHHhCCCEEEecCCCCChhHHHHH
Q 007047           68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (620)
Q Consensus        68 d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~  143 (620)
                      -|.+|..+  .+|..++......++..+...|+++||++....+.+.  ......+++...|+.+++++... .+.+-..
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            35555533  4577777766666777788889999999887665442  22334677889999999887654 4677788


Q ss_pred             HhhcCccEEEEcchhHHHhcc
Q 007047          144 LDHAEIDFVFVQDKKVKELLS  164 (620)
Q Consensus       144 l~~~~~~~vi~~~~~~~~~~~  164 (620)
                      +++.++.+++..+.....+..
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHH
Confidence            999999999999887665543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	620
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-21
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		6e-20
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-17
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-15
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		3e-15
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-14
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-14
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-14
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-13
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-13
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		3e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		4e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		9e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-11
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-09
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		5e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-04
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		5e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 158/620 (25%), Positives = 240/620 (38%), Gaps = 148/620 (23%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG-KFGPYVWKTYKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V     G     TY EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D  +    E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H     +  +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFH-----VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
            T  AGVP V+  + + ++     L+ LRR                              
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLRR------------------------------ 297
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---- 428
                         LV+ G A   + +  F R+     + QGYGLTET       F    
Sbjct: 298 --------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSH 341
Query: 429 ------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYY 480
                  +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY
Sbjct: 342 LESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 481 KNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
            N + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++   LEN     
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGH 457
Query: 540 PIIEDIWVYG---DSLKSMLVAVVVPCEEDTK--------------KWAYSNGH------ 576
           P +++  V        +   +AVVVP  E                 KW   + +      
Sbjct: 458 PKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEI 517
Query: 577 ----AGSFLELCSLVQLQNY 592
               AG FL+     Q +NY
Sbjct: 518 PRTSAGKFLKRALREQYKNY 537

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 138/333 (41%), Gaps = 60/333 (18%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK  
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            +  S G  +    +EN     P + +  V G+
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 72/334 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR 
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K++I IS GE V    +E+V    P + ++ V G
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 472 AGVAGLPDDDAGELPAAVVV 491

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 271
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 272 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            +                  KY L+                              +R+V 
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 390 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 443
           SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V  
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
            +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG 
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           I  +  + I+DR K LIK  +G  VA   LE +    P I D+ V
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V+G  +F GY++ P+ T+    D G+F TGD+G+I   G V I+ R 
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K+L+ I+ G  V  + +E+     P + +  V G
Sbjct: 399 KDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 141/350 (40%), Gaps = 58/350 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCE 564
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 141/350 (40%), Gaps = 58/350 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCE 564
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 141/350 (40%), Gaps = 58/350 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCE 564
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 436 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D  V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 71/298 (23%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 259 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 286
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 287 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 346
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 347 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 559 VVV 561
           VVV
Sbjct: 484 VVV 486

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 488
Query: 559 VVV 561
           VVV
Sbjct: 489 VVV 491

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 559 VVV 561
           VVV
Sbjct: 484 VVV 486

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 187/513 (36%), Gaps = 93/513 (18%)
Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D++  +   +P          VDG     V  T+++      ++ S L   G   G 
Sbjct: 7   TLADVYRRNAALFPDRTAF----MVDG-----VRLTHRDYLARAERLASGLLRDGVHTGD 57
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV I   NC + +E + A   +  I +P         VN+ L+  EI FV         +
Sbjct: 58  RVAILSQNCSEMIELIGAVALIGAILLP---------VNYRLNADEIAFVLGDGAPSVVV 108
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
              D R      V     SL   +K  A+  G  P++   F  L              + 
Sbjct: 109 AGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGPFA--PFKDLASDTPFSAPEFGAADG 162
Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             I++T+   G P+G +++   +    S +   +D +  ++T  DV L  LPL H+    
Sbjct: 163 FVIIHTAAVGGRPRGALISQGNLLIAQSSL---VDAW--RLTEADVNLGMLPLFHVTGLG 217
Query: 283 IEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
           +     + G ASV     D      D+   K T++A                  E  P+ 
Sbjct: 218 LMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMA------------------EFAPML 259
Query: 342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 401
             I D                 +A+P A L + R V              G      +E 
Sbjct: 260 GNILD-----------------QAAP-AQLASLRAVT-------------GLDTPETIER 288
Query: 402 FLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSVYSEL--RLEEVPEMGYS 458
           F      A     +G +ET G +T   + D         P S    L  R   V +    
Sbjct: 289 FEATCPNATFWATFGQSETSGLSTFAPYRDR--------PKSAGRPLFWRTVAVVDAEDR 340
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--KK 516
           PL     GE+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +K
Sbjct: 341 PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEK 400
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
            LIK + GE V    +E      P I D  V G
Sbjct: 401 ELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V  
Sbjct: 343 LHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVP 402
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
           +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI  
Sbjct: 403 FFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVV 560
              +G   I+DR K+LIK  +G  V    LE++    P I D  V G  D     L A V
Sbjct: 461 YDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAV 519
Query: 561 VPCEE 565
           V  EE
Sbjct: 520 VVLEE 524

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 187/510 (36%), Gaps = 100/510 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 378 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 432
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 492
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 493 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
             F        TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D 
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 546 WVYGD-------SLKSMLVAVVVPCEEDTK 568
            V  D       S+ + LV       ED K
Sbjct: 890 VVVADRHESGDASINAYLVNRTQLSAEDVK 919

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 176/475 (37%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 175/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 176/475 (37%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 175/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 384 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 441
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 169/475 (35%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E    V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEXTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF 
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFX 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L   PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA     V E +        V  YG TE         P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  + I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G+ E     T     E  +V T G P+S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 443 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 357
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 478 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GY+  P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 385 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 439
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 558
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P         + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 559 VV 560
           +V
Sbjct: 472 IV 473

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 7/167 (4%)
Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           +A+L   L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T
Sbjct: 298 RAQLAS-LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHT 356
Query: 438 AG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
            G P+    E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 357 QGYPMCPDDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 413
Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            +GD+  I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 414 CSGDLISIDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 412 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 462
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 516 KNLIKISQGEYVALEYLENV 535
            N +KI +G  V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
           A++L    + AR    +R+  S G  L  E+ E         ++ G G TE      +  
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEML---HIFL 342
Query: 429 PDEMCMV--GTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
            +    V  GT G PV  Y E+ L +  E G++ + D   G++ ++G +    Y+ N + 
Sbjct: 343 SNRAGAVEYGTTGRPVPGY-EIELRD--EAGHA-VPDGEVGDLYIKGPSAAVMYWNNREK 398
Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 469
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 470 VRGKTLFSGYYKNPDLTRE-----SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
             +A   LE +      + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
           E+      P+ +   G +C+ G +L SGY+ +     E    GW  TGD+G +L +G + 
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 511 IIDRKKNLIKI 521
           +  R K+LI I
Sbjct: 455 VTGRIKDLIII 465

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDR 514
           + TGD+ +   +GV++ + R
Sbjct: 448 YRTGDLARRRADGVLEYVGR 467

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	620
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-70
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-66
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-65
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-64
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	5e-62
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-61
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-59
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-58
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-56
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-54
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	5e-54
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-52
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-45
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	9e-33
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	9e-29
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	8e-28
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-27
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	8e-15
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	6e-07
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  235 bits (602), Expect = 2e-70
 Identities = 106/507 (20%), Positives = 169/507 (33%), Gaps = 100/507 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                               N             +    +         R  I+GGAP+ 
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297

Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
             + +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +      
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
                          GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + 
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407

Query: 511 IIDRKKNLIKISQGEYVALEYLENVYC 537
           I DR K++I IS G        ENVY 
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYP 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  227 bits (582), Expect = 1e-67
 Identities = 95/502 (18%), Positives = 147/502 (29%), Gaps = 103/502 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
                                       LA   A      +L   LR V   GA +   V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
            E   +       V  YG TE      +  P      GT      +SE+R+  V   G  
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341

Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
                    GE+ V    + F GY   P  T E + DGW+ T D+    P G V+I+ R 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401

Query: 516 KNLIKISQGEYVALEYLENVYC 537
            ++I IS G        EN++ 
Sbjct: 402 DDMI-ISGG--------ENIHP 414

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  224 bits (573), Expect = 2e-66
 Identities = 91/497 (18%), Positives = 161/497 (32%), Gaps = 96/497 (19%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    +          ++      
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
           ++                                      L+ ++ GGA LS  + E  L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
           +      +   +G+TETC       P+       T G  S   ++++             
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
                GE+ ++G  + +GY    D    +  +G+F+TGDI +I   G V I DR+K+LI 
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401

Query: 521 ISQGEYVALEYLENVYC 537
           IS G        EN+Y 
Sbjct: 402 ISGG--------ENIYP 410

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  222 bits (567), Expect = 2e-65
 Identities = 93/502 (18%), Positives = 164/502 (32%), Gaps = 109/502 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
                                   A L             LR V     P +  +E F  
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291

Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
               A     +G +ET G +T     +     +AG    +  + +       +P  E+G 
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
                    E+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399

Query: 516 KNLIKISQGEYVALEYLENVYC 537
           K LI  + G        ENVY 
Sbjct: 400 KELI-KTGG--------ENVYP 412

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  219 bits (560), Expect = 2e-64
 Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           T+     DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  213 bits (546), Expect = 5e-62
 Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
           VP                  P      + L                         +    
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296

Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
                 L++  +G  P++  + E  L++             Q +G+TE C   T   P  
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           +    T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E 
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407

Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
                    +F TGD+G I   G +   DR K +IK  
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  212 bits (541), Expect = 2e-61
 Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP   
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F  L K +L        +       DL            
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DIG         I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  207 bits (529), Expect = 1e-59
 Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP   
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F    K  L        +       DL            
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            + E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DI     +    I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  205 bits (525), Expect = 2e-59
 Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 537
           +F TGD+    P+G V+I+ RK  +LI  S G          +  
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  203 bits (518), Expect = 3e-58
 Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             GT G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  204 bits (522), Expect = 4e-58
 Identities = 89/517 (17%), Positives = 162/517 (31%), Gaps = 128/517 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
            E     T        ++ T G P+    E+ +       +P  E+G           + 
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386

Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
            RG   F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 564
            E +EN+    P +               A+V +  E
Sbjct: 446 AEEIENLLLRHPAVIY------------AALVSMEDE 470

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  198 bits (505), Expect = 3e-56
 Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP        
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                     P    +  ++ K               SP  D       K  L   LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
            SGGAPL  E+ +        A L QGYG+TE      +C            G  G V  
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
            +E+++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 500 IGQILPNGVVKIIDRKKNLIK 520
           IG I  +  + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  194 bits (495), Expect = 1e-54
 Identities = 80/552 (14%), Positives = 164/552 (29%), Gaps = 137/552 (24%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
                                       + W+      +    +  L             
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
            +L+  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366

Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
           S   E+++      EVP  E+          G +  RG   F GYY++P+   +    D 
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK 553
           ++++GD+ Q  P+G ++++ R K+ I    GE +A E +E +  + P +           
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMH--------- 466

Query: 554 SMLVAVV-VPCE 564
               A+V +  E
Sbjct: 467 ---AALVAIVDE 475

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  191 bits (489), Expect = 5e-54
 Identities = 110/553 (19%), Positives = 185/553 (33%), Gaps = 143/553 (25%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
           +                              + WM+          L+ L          
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL---------- 300

Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
               +++  GGA  S E       V  C  L Q +G+ E          D    +V T G
Sbjct: 301 ----QVLQVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354

Query: 440 -PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D 492
            P+S Y E R+      +V   G +       G +  RG     GYYK  +    S   D
Sbjct: 355 KPMSPYDESRVWDDHDRDVKP-GET-------GHLLTRGPYTIRGYYKAEEHNAASFTED 406

Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL 552
           G++ TGDI ++  +G + +  R K+ I    GE VA E +EN     P + D        
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHD-------- 457

Query: 553 KSMLVAVV-VPCE 564
                A+V +P +
Sbjct: 458 ----AAMVSMPDQ 466

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  192 bits (491), Expect = 2e-52
 Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
                           P    I  A+ K               S   +       K  L 
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344

Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
             +R+V SG APL  E+ +        A L QGYG+TE      +             G 
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403

Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
            G V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           W HTGDIG I  +  + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  169 bits (430), Expect = 1e-45
 Identities = 123/499 (24%), Positives = 181/499 (36%), Gaps = 123/499 (24%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLR--VTCC 408
              W+ +                     RL   LR ++ GG+     +   F R  V   
Sbjct: 278 ---WLAL------------ADYLESTGHRLKT-LRRLVVGGSAAPRSLIARFERMGVE-- 319

Query: 409 AFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             + QGYGLTET       F           +++ +    G       LR+ +  E    
Sbjct: 320 --VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPV 376

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
           P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K+
Sbjct: 377 PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKD 436

Query: 518 LIKISQGEYVA-LEYLENV 535
           LIK S GE+++ ++ LEN 
Sbjct: 437 LIK-SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  120 bits (302), Expect = 9e-29
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
             NPD T  +I   ++  GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  116 bits (292), Expect = 8e-28
 Identities = 84/507 (16%), Positives = 144/507 (28%), Gaps = 129/507 (25%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345
                   V                  P +L G P V       ++      RP   R  
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVLTSPVSFLQ------RPA--RWM 275

Query: 346 DALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGAPLSTE 398
             +       +   N  +         +L A R     + G     +  ++SG   +   
Sbjct: 276 HLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSERVQAA 326

Query: 399 -VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMCMVGTA 438
            ++ F       F         +   Y L E             P TV F  E    G A
Sbjct: 327 TIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382

Query: 439 GPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
            P +      L                +       D   GE+ V G  + +GY++ PD +
Sbjct: 383 KPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQKPDES 441

Query: 487 RESII------------DGWFHTGDIG 501
             +                W  TGD G
Sbjct: 442 ERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  116 bits (292), Expect = 2e-27
 Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
               P D    GE+ V+  ++  GY+  P+ TR +             +  TGD+G  L 
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447

Query: 506 NGVVKIIDRKKNLIKI 521
              + +  R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 75.5 bits (185), Expect = 8e-15
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 486 TRESIIDGWFHTG 498
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 494 WFHTGDIG 501
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 76/510 (14%), Positives = 142/510 (27%), Gaps = 139/510 (27%)

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
                +  + + L+       +P       E     K+L   Y   +  DL RE +    
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKIS---------QGEYVALEYL-ENVYC 537
                I + + +G+           D+   +I+ S         +  +  L     + + 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLE------LCSLVQLQN 591
              ++  IW        M+V       +  K          S +E        S+  +  
Sbjct: 388 PTILLSLIWFDVIKSDVMVVV-----NKLHKY---------SLVEKQPKESTISIPSIYL 433

Query: 592 YILSELKNAAERNKVI---------FANWD 612
            +  +L+N    ++ I         F + D
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 56/444 (12%), Positives = 117/444 (26%), Gaps = 157/444 (35%)

Query: 71  FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 127
           F  + W   K     E VL+++  L             + +N    + +++    L  L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238

Query: 128 CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 183
               Y + L       +L +       VQ+ K     +  C      ++++   F  +T 
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279

Query: 184 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 220
               A    +++       + DE   L  K  +     LP +     P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 221 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 248
            + T       + D                            P    +    ++      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 249 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 290
             S V + +++               +++  +YL            H    +++ Y   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI--HEGIKKA-LEELRPLRRRIF-D 346
                +   DL     D               +  I  H  +K     E   L R +F D
Sbjct: 458 ----TFDSDDLIPPYLD------------QYFYSHIGHH--LKNIEHPERMTLFRMVFLD 499

Query: 347 ALYKYKLAWM-----NMGYKQREASPLADLLA-FRKVKARLGGRLRLVISGGAP----LS 396
                   ++     +       +  + + L   +  K          I    P    L 
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--------ICDNDPKYERLV 545

Query: 397 TEVEEFLR-----VTCCAF--LVQ 413
             + +FL      + C  +  L++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR 569

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 64.5 bits (158), Expect = 5e-11
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
           P            +D+          GE+ V G  +  GY  NP+ T E+          
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382

Query: 496 HTGDIGQILPNGV----------VKI 511
           HTGDIG +  + +          +K 
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
             GE+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861

Query: 517 NLIKI 521
           + +KI
Sbjct: 862 DQVKI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
            P        L             GE+ + G  + +GY   PD      I+G   + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 500 IGQILPNGV----------VKI 511
           I ++  +            VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.4 bits (132), Expect = 6e-08
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
           +   + E   +       GE+   G  L  GY  +   TR S ++  +         TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402

Query: 500 IGQILPNGV----------VKI 511
             +    G           VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 51.3 bits (124), Expect = 6e-07
 Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F   
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

Query: 497 -----TGDIGQILPNGV----------VKI 511
                TGD  + L +G           VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	620
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.87
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.82
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.6
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.54
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.49
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.34
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.92
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	90.54
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	83.86
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	83.76

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=4.7e-73  Score=620.51  Aligned_cols=499  Identities=20%  Similarity=0.242  Sum_probs=393.6

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCC--CCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC
Q 007047           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (620)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~--~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~  109 (620)
                      .++|..+....++.++|.++++++||++|+++.   ++  ..+.++++||+||.++++++|++|++.|+++||+|+|+++
T Consensus         9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            456666677799999999999999999999987   42  1334578999999999999999999999999999999999


Q ss_pred             CcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHH
Q 007047          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (620)
Q Consensus       110 n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~  189 (620)
                      |++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+......  .....++..+..       
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------  156 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE-------  156 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence            99999999999999999999999999999999999999999999998876655443322  234555555432       


Q ss_pred             HhhcCCceeeHHHHHhcCccCcccCCCCC-CCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcE
Q 007047          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (620)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (620)
                             ..+++++........ ...... ++|+++|+|||||||.||||++||+++...+......+     ++..+|+
T Consensus       157 -------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~  223 (549)
T 3g7s_A          157 -------VNSLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDT  223 (549)
T ss_dssp             -------SSCHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCE
T ss_pred             -------CcCHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCE
Confidence                   345666665543322 222333 48999999999999999999999999999998877766     7899999


Q ss_pred             EEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007047          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (620)
Q Consensus       269 ~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (620)
                      +++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.......            
T Consensus       224 ~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------  291 (549)
T 3g7s_A          224 IVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------  291 (549)
T ss_dssp             EECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------
T ss_pred             EEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------
Confidence            9999999999998877778999999999876 999999999999999999999999998764332100            


Q ss_pred             HHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHh----cC---CeeEeecCCCCC
Q 007047          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTET  420 (620)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~YG~TE~  420 (620)
                                             ..++        +++|.+++||+++++++.+++.+.    ++   +++++.||+||+
T Consensus       292 -----------------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  340 (549)
T 3g7s_A          292 -----------------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA  340 (549)
T ss_dssp             -----------------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred             -----------------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence                                   0011        389999999999999999999887    56   899999999999


Q ss_pred             CCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc---cCC--cc
Q 007047          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WF  495 (620)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~---~dg--w~  495 (620)
                      +.+++..........+++|.|+++++++|+|.+++  .+++.|+.|||+|+|++++.|||++|+.|.+.|   .+|  ||
T Consensus       341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~  418 (549)
T 3g7s_A          341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDG--RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF  418 (549)
T ss_dssp             SSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSC--CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred             chhhhcCCccccCcCCCccccCCCCEEEEEeCCCC--cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence            98887766555455689999999999999994443  455677899999999999999999999999998   678  99


Q ss_pred             cccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHH
Q 007047          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (620)
Q Consensus       496 ~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~  572 (620)
                      +|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++++..     
T Consensus       419 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-----  492 (549)
T 3g7s_A          419 RTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR-----  492 (549)
T ss_dssp             EEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-----
T ss_pred             ccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc-----
Confidence            99999999999999999999999997 7999999999999999999999999997764   47889998764310     


Q ss_pred             HCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                       ..        ....++++++.++++.++.|..+.+++-.|++
T Consensus       493 -~~--------~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t  526 (549)
T 3g7s_A          493 -GK--------VDEEDIIEWVRERISGYKRVREVEFVEELPRT  526 (549)
T ss_dssp             -TS--------CCHHHHHHHHHTTCC-----CCCCEEEECC--
T ss_pred             -Cc--------CCHHHHHHHHHHhccCcccceEEEEeccCCCC
Confidence             00        01125666666667777777777666655543

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.4e-72  Score=611.97  Aligned_cols=504  Identities=25%  Similarity=0.324  Sum_probs=405.2

Q ss_pred             CCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCC
Q 007047           21 VGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP  100 (620)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~  100 (620)
                      +..+|++......+|    ...++.++|.++++++||++|+++.   ++.    +++||+||.++++++|++|++.|+++
T Consensus         5 ~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~   73 (536)
T 3ni2_A            5 EEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQ   73 (536)
T ss_dssp             CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             cceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence            345666554333322    3478999999999999999999864   321    57999999999999999999999999


Q ss_pred             CCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEec
Q 007047          101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT  180 (620)
Q Consensus       101 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~  180 (620)
                      ||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+.......  .. .++.++
T Consensus        74 gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~~  150 (536)
T 3ni2_A           74 GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCVD  150 (536)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEESS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEec
Confidence            999999999999999999999999999999999999999999999999999999987766554332211  22 344443


Q ss_pred             CCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccccc
Q 007047          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (620)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~  260 (620)
                      ...           .....++++...... ........++|+++++|||||||.||||++||++++..+....... ...
T Consensus       151 ~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~  217 (536)
T 3ni2_A          151 SAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPN  217 (536)
T ss_dssp             CCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCS
T ss_pred             CCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-ccc
Confidence            321           134566666654322 2233456789999999999999999999999999998876543321 011


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (620)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (620)
                      ..+..+|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...       
T Consensus       218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------  290 (536)
T 3ni2_A          218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD-------  290 (536)
T ss_dssp             SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC-------
T ss_pred             ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc-------
Confidence            25788999999999999999865 5678999999999876 89999999999999999999999998764211       


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCC
Q 007047          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL  417 (620)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  417 (620)
                                                    ....++        +++|.+++||+++++++.+++++.+ ++++++.||+
T Consensus       291 ------------------------------~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~  332 (536)
T 3ni2_A          291 ------------------------------LDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM  332 (536)
T ss_dssp             ------------------------------GGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred             ------------------------------cccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence                                          111122        3899999999999999999999988 8999999999


Q ss_pred             CCCCCceeecc----CCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cC
Q 007047          418 TETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  492 (620)
Q Consensus       418 TE~~~~~~~~~----~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~d  492 (620)
                      ||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.|||++|+.|.+.| .+
T Consensus       333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~  410 (536)
T 3ni2_A          333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE  410 (536)
T ss_dssp             GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred             cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCC
Confidence            99998766542    12233458899999999999999 4433 455677899999999999999999999999999 79


Q ss_pred             CcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHH
Q 007047          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (620)
Q Consensus       493 gw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~  569 (620)
                      |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.   
T Consensus       411 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~---  486 (536)
T 3ni2_A          411 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS---  486 (536)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC---
T ss_pred             CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC---
Confidence            99999999999999999999999999998 7999999999999999999999999986543   5889999875421   


Q ss_pred             HHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                           .        ....++++++.++++.++.|.++.+++-.|++
T Consensus       487 -----~--------~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t  519 (536)
T 3ni2_A          487 -----Q--------ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKA  519 (536)
T ss_dssp             -----C--------CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBC
T ss_pred             -----C--------CCHHHHHHHHHHhccCCccccEEEEEecCCCC
Confidence                 0        01125666666667777777777776666654

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1e-71  Score=608.47  Aligned_cols=460  Identities=25%  Similarity=0.321  Sum_probs=364.9

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++||++|+++.   +.  +..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864   21  2347899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.+++++++++++|++.+....+.... ...+.++.++.++....          .....+
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence            9999999999999999999999999999999999988765543322 22344556666554221          023456


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhh--hhhcccccCCCCCCcEEEEecChhHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      ++++.....    .....++++++++|||||||.||||++||++++......  ...+     +++++|++++.+|++|.
T Consensus       161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (541)
T 1v25_A          161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV  231 (541)
T ss_dssp             HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred             HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence            665543221    134567899999999999999999999999998776542  2223     67889999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +++...+.++..|+++++.+.  ++..+++.++++++|+++++|+++..+.+.......                     
T Consensus       232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------  290 (541)
T 1v25_A          232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH---------------------  290 (541)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC---------------------
T ss_pred             hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC---------------------
Confidence            998667778999999999864  899999999999999999999999998764332110                     


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-----
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----  431 (620)
                                      ++        +++|.+++||+++++++.+++ +.+|+++++.||+||++.+++......     
T Consensus       291 ----------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  345 (541)
T 1v25_A          291 ----------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL  345 (541)
T ss_dssp             ----------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             ----------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence                            01        389999999999999999999 557999999999999998777654331     


Q ss_pred             -----ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEcc
Q 007047          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (620)
Q Consensus       432 -----~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~  505 (620)
                           ....+++|.|+|+++++|+| +++...+.+.++.|||+|+|+.++.|||++|+.|.+.| .||||+|||+|++|+
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~  424 (541)
T 1v25_A          346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE  424 (541)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred             CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence                 12347899999999999999 77766655445789999999999999999999999999 499999999999999


Q ss_pred             CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC-----hHHHHHHHHH
Q 007047          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC-----EEDTKKWAYS  573 (620)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~-----~~~~~~~~~~  573 (620)
                      ||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++     .+++.+++.+
T Consensus       425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~  499 (541)
T 1v25_A          425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLK  499 (541)
T ss_dssp             TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------------------
T ss_pred             CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHh
Confidence            9999999999999996 8999999999999999999999999987654   5888998864     2455566655

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.9e-71  Score=609.95  Aligned_cols=457  Identities=17%  Similarity=0.177  Sum_probs=380.3

Q ss_pred             CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      .+.+++.+.++|+++|+++||++|+++.   ++ .+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++
T Consensus        51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~  126 (580)
T 3etc_A           51 VPENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY  126 (580)
T ss_dssp             CCSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred             CcccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence            3456777789999999999999999986   43 3445899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH--HHhcccccccccCc-cEEEEecCCcHHHHHHHhhc
Q 007047          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQT  193 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~  193 (620)
                      ++|||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+..... ..+.+ ..++.++...          
T Consensus       127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------  195 (580)
T 3etc_A          127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV----------  195 (580)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------
T ss_pred             HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------
Confidence            9999999999999999999999999999999999999987653  33322221 12232 3445544321          


Q ss_pred             CCceeeHHHHHhcCccCcccC---CCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEE
Q 007047          194 GIKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (620)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~  270 (620)
                      ...+.++.+.+.........+   ....++|+++++|||||||.||||+++|.+++..+.....++     ++..+++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  270 (580)
T 3etc_A          196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHY  270 (580)
T ss_dssp             CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEE
T ss_pred             ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEE
Confidence            123566776665443322211   246789999999999999999999999999988776655444     788999999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEec---CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      +..|++|..+... .+.++..|+++++.+   .++..+++.++++++|+++++|++++.+.+..                
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------  334 (580)
T 3etc_A          271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------  334 (580)
T ss_dssp             ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------
T ss_pred             EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------
Confidence            9999999888764 567899999998874   28999999999999999999999999876410                


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceee
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  426 (620)
                                            ....++        ++||.+++||+++++++.++|.+.+|+++++.||+||++..++.
T Consensus       335 ----------------------~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  384 (580)
T 3etc_A          335 ----------------------LSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT  384 (580)
T ss_dssp             ----------------------C---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred             ----------------------cccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence                                  011112        38999999999999999999999889999999999999877666


Q ss_pred             ccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec-----CCcccccCCChhhhhccccCCcccccceE
Q 007047          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (620)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g-----~~v~~gy~~~~~~t~~~~~dgw~~TGDl~  501 (620)
                      .+.. ....+++|+|+|+++++|+| +++.  +++.|+.|||+|+|     +.++.||+++|+.|.+.|.+|||+|||+|
T Consensus       385 ~~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg  460 (580)
T 3etc_A          385 FPWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA  460 (580)
T ss_dssp             CTTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEE
T ss_pred             CCCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEE
Confidence            5433 33458999999999999999 6654  55667899999997     78999999999999999999999999999


Q ss_pred             EEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      ++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+
T Consensus       461 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~  525 (580)
T 3etc_A          461 WMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTK  525 (580)
T ss_dssp             EECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred             EECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECC
Confidence            99999999999999999997 6999999999999999999999999987654   58889998754

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=9.3e-72  Score=609.27  Aligned_cols=449  Identities=15%  Similarity=0.165  Sum_probs=334.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..|+.++|.++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999864   2      6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      |+++|++++|+++.++.+++.+++++++++++|++.....    ...............++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876431    111111222234455555544311            


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      ...+.++...............++|+++++|||||||.||||++||+++...+......+     ++.++|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            223444444332222233456789999999999999999999999999999998877776     889999999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......                   
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  303 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------------------  303 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence            9999874  6678999999999876 89999999999999999999999999876432111                   


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                        .++        +++|.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus       304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                              112        389999999999999999999998999999999999998655444333334


Q ss_pred             ccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEE
Q 007047          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       434 ~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      ...++|.|+ ++++++|+| +++.  +++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  434 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV  434 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence            447899996 899999999 6654  45667899999999999999999999999999 799999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~  489 (544)
T 3o83_A          435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN  489 (544)
T ss_dssp             EEEEC---------------------------------------------------
T ss_pred             EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC
Confidence            9999999996 7999999999999999999999999987654   47888888754

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2.2e-71  Score=607.38  Aligned_cols=479  Identities=25%  Similarity=0.299  Sum_probs=335.7

Q ss_pred             CCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 007047           33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (620)
Q Consensus        33 ~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~  112 (620)
                      +.+..+....|+.++|.++++++||++|++...  ++..+  +++||+||.++++++|++|++.|+++||+|+|+++|++
T Consensus        11 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~   86 (550)
T 3rix_A           11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL   86 (550)
T ss_dssp             CCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Confidence            335566667899999999999999999986320  22111  68999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (620)
Q Consensus       113 e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (620)
                      ++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ...+.+..++.++....        
T Consensus        87 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------  157 (550)
T 3rix_A           87 QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD--------  157 (550)
T ss_dssp             TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC--------
T ss_pred             cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc--------
Confidence            999999999999999999999999999999999999999999998776554432 23345666666654321        


Q ss_pred             cCCceeeHHHHHhcCccCc------ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCC
Q 007047          193 TGIKPYSWDEFLHLGKVNE------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD  266 (620)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~  266 (620)
                       .....++.++........      .+.....++|+++++|||||||.||||++||++++..+......+  ...++.++
T Consensus       158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~  234 (550)
T 3rix_A          158 -YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPD  234 (550)
T ss_dssp             -BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTT
T ss_pred             -ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCC
Confidence             112445666554332211      111223468899999999999999999999999998877654431  11257789


Q ss_pred             cEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007047          267 DVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (620)
Q Consensus       267 d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (620)
                      |++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..               
T Consensus       235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------  299 (550)
T 3rix_A          235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST---------------  299 (550)
T ss_dssp             CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC---------------
T ss_pred             cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---------------
Confidence            999999999999998888888999999999876 8999999999999999999999999886421               


Q ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCe-eEeecCCCCCCCce
Q 007047          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPT  424 (620)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~  424 (620)
                                            ..+..++        +++|.+++||+++++++.+++.+.++.. +++.||+||+++.+
T Consensus       300 ----------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  349 (550)
T 3rix_A          300 ----------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI  349 (550)
T ss_dssp             ----------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEE
T ss_pred             ----------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccce
Confidence                                  1111122        3899999999999999999999988864 99999999999887


Q ss_pred             eeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEE
Q 007047          425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  503 (620)
Q Consensus       425 ~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~  503 (620)
                      +...... ...+++|.|+|+++++|+| ++++ .+++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++
T Consensus       350 ~~~~~~~-~~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~  426 (550)
T 3rix_A          350 LITPEGD-DKPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYW  426 (550)
T ss_dssp             EECCTTC-CCTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEE
T ss_pred             ecCCCCC-CCCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEE
Confidence            7765544 3448999999999999999 4333 556677899999999999999999999999999 8999999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh------HHHHHHHHHC
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE------EDTKKWAYSN  574 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~------~~~~~~~~~~  574 (620)
                      |+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++++      +++.++++++
T Consensus       427 ~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~  505 (550)
T 3rix_A          427 DEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ  505 (550)
T ss_dssp             CTTCCEEEC-----------------------------------------------------------------------
T ss_pred             eCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            999999999999999997 7999999999999999999999999987754   47888888643      4566666655


Q ss_pred             CC
Q 007047          575 GH  576 (620)
Q Consensus       575 ~~  576 (620)
                      ..
T Consensus       506 l~  507 (550)
T 3rix_A          506 VT  507 (550)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=4.6e-71  Score=600.00  Aligned_cols=480  Identities=24%  Similarity=0.317  Sum_probs=388.0

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      +...|+.++|.++++++||++|+++.   +.    .+++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            56789999999999999999999875   32    158999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++....               ..
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence            999999999999999999999999999999999999987765443222111 11111111111               01


Q ss_pred             eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      .+.+.+.... .........++|+++++|||||||.||||++||+++.+.+......+     +++.+|++++.+|++|.
T Consensus       150 ~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  223 (517)
T 3r44_A          150 SLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV  223 (517)
T ss_dssp             HHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred             cHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence            2333333221 12233456789999999999999999999999999999998877766     78999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007047          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (620)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (620)
                      +++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+.....                        
T Consensus       224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  279 (517)
T 3r44_A          224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------  279 (517)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred             HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence            998876666559999999876 9999999999999999999999999886532211                        


Q ss_pred             hccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-ccccC
Q 007047          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (620)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~  436 (620)
                                   ..++        +++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus       280 -------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  337 (517)
T 3r44_A          280 -------------ELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG  337 (517)
T ss_dssp             -------------HCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred             -------------cCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence                         1111        489999999999999999999886 999999999999998776654433 34458


Q ss_pred             ccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeeccc
Q 007047          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (620)
Q Consensus       437 ~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~  516 (620)
                      ++|.|+++++++++| +++..  ++.| .|||+|+|+.++.|||++|+.|.+.|.+|||+|||+|++++||+|+|+||+|
T Consensus       338 ~~G~~~~~~~~~i~d-~~~~~--~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d  413 (517)
T 3r44_A          338 SAGRATMFTDVAVRG-DDGVI--REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK  413 (517)
T ss_dssp             CCBEECTTEEEEEEC-TTSCE--ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred             CCCcCCCCeEEEEEC-CCCCC--CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence            999999999999999 65543  3344 7999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHH
Q 007047          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (620)
Q Consensus       517 d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (620)
                      |+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+....++                 ...++++++
T Consensus       414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~-----------------~~~~l~~~l  475 (517)
T 3r44_A          414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEV-----------------SEQQIVEYC  475 (517)
T ss_dssp             GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTC-----------------CHHHHHHHH
T ss_pred             CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCC-----------------CHHHHHHHH
Confidence            99997 7999999999999999999999999987654   36667764332110                 112566666


Q ss_pred             HHHHHHHHHHCCCccCCccccc
Q 007047          594 LSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       594 ~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .+.++.++.|..+.+++-.|++
T Consensus       476 ~~~L~~~~~P~~i~~v~~lP~t  497 (517)
T 3r44_A          476 GTRLARYKLPKKVIFAEAIPRN  497 (517)
T ss_dssp             HHHSCGGGSCSEEEECSCCCBC
T ss_pred             HHhCCCCCCCCEEEEECCCCCC
Confidence            6777777777777776665544

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.6e-71  Score=606.75  Aligned_cols=455  Identities=19%  Similarity=0.192  Sum_probs=373.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864   2      5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      |+++|++++|+++.++.+++.+++++++++++|+++....    ..........+.++.++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999875321    11111111223444454443211             


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                        .+.++.... ..........++|+++++|||||||.||||++||+++++.+......+     +++.+|++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              011121111 111122345789999999999999999999999999999888776666     788999999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (620)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (620)
                      |.+++..  .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......                   
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  294 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------  294 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence            9999874  6778999999999876 89999999999999999999999999876432110                   


Q ss_pred             HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (620)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (620)
                                        .++        +++|.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus       295 ------------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  348 (539)
T 1mdb_A          295 ------------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI  348 (539)
T ss_dssp             ------------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ------------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence                              011        389999999999999999999988899999999999965433322222223


Q ss_pred             ccCccccCccC-eeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEE
Q 007047          434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       434 ~~~~~G~~~~~-~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~  511 (620)
                      ..+++|+|+++ .+++|+| +++.  +++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  425 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV  425 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence            34789999975 5899998 6554  55667899999999999999999999999999 699999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC-----hHHHHHHHHHC
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC-----EEDTKKWAYSN  574 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~-----~~~~~~~~~~~  574 (620)
                      +||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++     .+++.++++++
T Consensus       426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~  495 (539)
T 1mdb_A          426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER  495 (539)
T ss_dssp             EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHT
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhC
Confidence            9999999996 8999999999999999999999999987654   4789999875     34555555554

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.2e-70  Score=595.34  Aligned_cols=472  Identities=21%  Similarity=0.264  Sum_probs=377.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      |+|+.++|.++++++||++|+++.   +..    +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            578999999999999999999864   211    6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEE--cchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      |+++|++++|+++.++.+++.+++++++++++|+  +......+....    ...+ ++                     
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~---------------------  127 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II---------------------  127 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence            9999999999999999999999999999999999  665544331111    1111 12                     


Q ss_pred             eHHHHHhcCc----cCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCC--CCCcEEEEe
Q 007047          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (620)
Q Consensus       199 ~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~  272 (620)
                      .++++.....    ..........++|+++++|||||||.||||++||+++.+.+......+     ++  +.+|++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence            1222222110    011111345789999999999999999999999999998887766555     56  788999999


Q ss_pred             cChhHHHHHH-HHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007047          273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (620)
Q Consensus       273 ~pl~h~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (620)
                      +|++|.+++. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                 
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------  265 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA-----------------  265 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence            9999999985 46778999999999876 8999999999999999999999999987532100                 


Q ss_pred             HHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC
Q 007047          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (620)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  430 (620)
                                        ....++        +++|.+++||+++++++.+.+++.++..+++.||+||++. +....  
T Consensus       266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--  316 (504)
T 1t5h_X          266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--  316 (504)
T ss_dssp             ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred             ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence                              000011        3899999999999999999999999999999999999933 22222  


Q ss_pred             CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEe-cCCcccccCCChhhhhccccCCcccccceEEEccCCcE
Q 007047          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (620)
Q Consensus       431 ~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~-g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l  509 (620)
                       ....+++|.|.+++++++++..++...+++.|+.|||+|+ |+.++.||+++|+.|.+.|.||||+|||+|++|+||+|
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l  395 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV  395 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred             -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence             1233789999999999999933333356677899999999 99999999999999999999999999999999999999


Q ss_pred             EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhcc
Q 007047          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (620)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  586 (620)
                      +|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.        .        ...
T Consensus       396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~--------~~~  458 (504)
T 1t5h_X          396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------T--------LSA  458 (504)
T ss_dssp             EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------C--------CCH
T ss_pred             EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------C--------cCH
Confidence            999999999997 7999999999999999999999999997764   5899999976431        0        011


Q ss_pred             HHHHHHHHH-HHHHHHHHCCCccCCcccc
Q 007047          587 VQLQNYILS-ELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       587 ~~~~~~~~~-~i~~~~~~~~~~~~~~~~~  614 (620)
                      .++++++.. +++.++.|+++.+++-.|.
T Consensus       459 ~~l~~~~~~~~L~~~~~P~~i~~v~~lP~  487 (504)
T 1t5h_X          459 DALDTFCRSSELADFKRPKRYFILDQLPK  487 (504)
T ss_dssp             HHHHHHHHTSSCCGGGSCSEEEECSCCCB
T ss_pred             HHHHHHHhhccCcccccceEEEEhhhCCC
Confidence            245555555 5666666666666665554

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=5.4e-70  Score=595.56  Aligned_cols=488  Identities=25%  Similarity=0.293  Sum_probs=387.6

Q ss_pred             cccHHH-HHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        41 ~~ti~~-~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..++.+ +|.++++++ |++|+++.   ++.    +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|
T Consensus        24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   95 (548)
T 2d1s_A           24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI   95 (548)
T ss_dssp             CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence            468999 899999999 99999863   211    579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+..... ..+....++.++....         ......
T Consensus        96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~  165 (548)
T 2d1s_A           96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC  165 (548)
T ss_dssp             HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred             HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence            999999999999999999999999999999999999887655433221 1122344555543210         001335


Q ss_pred             HHHHHhcCccCcccCCCC------CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 007047          200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~  273 (620)
                      |+++..............      .++|+++++|||||||.||||++||+++...+......+.  ..+++++|++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~  243 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV  243 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence            666655432110111111      2389999999999999999999999999988876654410  12678899999999


Q ss_pred             ChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       274 pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      |++|.+++.. .+.++ .|+++++.+. ++..+++.++++++|+++++|+++..+.+...                    
T Consensus       244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  302 (548)
T 2d1s_A          244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--------------------  302 (548)
T ss_dssp             CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred             cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence            9999999876 44556 9999999875 89999999999999999999999998864110                    


Q ss_pred             HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCC
Q 007047          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  430 (620)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~  430 (620)
                                       .+..++        +++|.+++||+++++++.+++.+.+ +..+++.||+||++..++.....
T Consensus       303 -----------------~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  357 (548)
T 2d1s_A          303 -----------------LNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG  357 (548)
T ss_dssp             -----------------GGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred             -----------------cccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence                             111112        3899999999999999999999988 68899999999999877664433


Q ss_pred             CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcE
Q 007047          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  509 (620)
Q Consensus       431 ~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l  509 (620)
                       ....+++|.|+|+++++|+|.+++  .+++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|
T Consensus       358 -~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l  434 (548)
T 2d1s_A          358 -DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF  434 (548)
T ss_dssp             -CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred             -cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence             334589999999999999993333  455677899999999999999999999999999 7999999999999999999


Q ss_pred             EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhcc
Q 007047          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (620)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  586 (620)
                      +|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.        .        ...
T Consensus       435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~--------~~~  497 (548)
T 2d1s_A          435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------N--------MTE  497 (548)
T ss_dssp             EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------C--------CCH
T ss_pred             EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------C--------CCH
Confidence            999999999997 8999999999999999999999999987654   4788999875421        0        011


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCccCCcccc
Q 007047          587 VQLQNYILSELKNAAERN-KVIFANWDTG  614 (620)
Q Consensus       587 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~  614 (620)
                      .++++++.++++.++.|. ++.+++-.|.
T Consensus       498 ~~l~~~~~~~l~~~~~p~~~i~~v~~lP~  526 (548)
T 2d1s_A          498 KEVMDYVASQVSNAKRLRGGVRFVDEVPK  526 (548)
T ss_dssp             HHHHHHHHTTSCGGGSCTTCEEECSSCCB
T ss_pred             HHHHHHHHHhccccccccccEEEccCCCC
Confidence            245555555555555555 5555555443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.7e-69  Score=592.13  Aligned_cols=494  Identities=19%  Similarity=0.208  Sum_probs=399.0

Q ss_pred             CCCcccHHHHHHHHHHh-----CCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCc
Q 007047           38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC  111 (620)
Q Consensus        38 ~~~~~ti~~~l~~~a~~-----~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~  111 (620)
                      +..++++.++|.+++++     +||++|+++.   +. .+..+++||+||.++++++|++|.+. |+++||+|+|+++|+
T Consensus        34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~  109 (570)
T 3c5e_A           34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV  109 (570)
T ss_dssp             CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred             CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence            34567788999999999     9999999976   42 23347899999999999999999998 999999999999999


Q ss_pred             HhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHh
Q 007047          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       112 ~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ...+.++.++.++....       
T Consensus       110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  181 (570)
T 3c5e_A          110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC-------  181 (570)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred             HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence            9999999999999999999999999999999999999999999987766543322 22344556666654211       


Q ss_pred             hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHH-HhhhhhhhcccccCCCCCCcEEE
Q 007047          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYL  270 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~~~~~~d~~~  270 (620)
                         .....+++++..... ........++|+++|+|||||||.||||++||+.+.. ..... ..+     +++.+|+++
T Consensus       182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~-----~~~~~d~~~  251 (570)
T 3c5e_A          182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT-----GLQASDIMW  251 (570)
T ss_dssp             ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred             ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc-----CCCCCceEE
Confidence               123456666654322 1222345789999999999999999999999994332 33332 333     788999999


Q ss_pred             EecChhHHHHHH-HHHHHhhcCcEEEEec---CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          271 SFLPLAHILDRV-IEEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       271 ~~~pl~h~~g~~-~~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      +.+|++|.+++. ..+.++..|+++++..   .++..+++.++++++|+++++|+++..+.+..                
T Consensus       252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------  315 (570)
T 3c5e_A          252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------  315 (570)
T ss_dssp             ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred             EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence            999999999987 4677899999999986   28999999999999999999999999886420                


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceee
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  426 (620)
                                            ....++        +++|.+++||+++++++.+.|.+.+|+++++.||+||++..++.
T Consensus       316 ----------------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  365 (570)
T 3c5e_A          316 ----------------------LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV  365 (570)
T ss_dssp             ----------------------TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred             ----------------------cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence                                  000111        38999999999999999999998889999999999999876655


Q ss_pred             ccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEe-----cCCcccccCCChhhhhccccCCcccccceE
Q 007047          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (620)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~-----g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~  501 (620)
                      .... ....+++|.|+++++++|+| +++.  +++.|+.|||+|+     |++++.|||++|+.|.+.|.+|||+|||+|
T Consensus       366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg  441 (570)
T 3c5e_A          366 SKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG  441 (570)
T ss_dssp             CTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred             Cccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence            4332 33458999999999999999 6654  4566789999999     999999999999999999999999999999


Q ss_pred             EEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCC
Q 007047          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (620)
Q Consensus       502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~  578 (620)
                      ++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...         .
T Consensus       442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~---------~  511 (570)
T 3c5e_A          442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS---------H  511 (570)
T ss_dssp             EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT---------S
T ss_pred             EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC---------c
Confidence            99999999999999999997 7999999999999999999999999987653   578999998654210         0


Q ss_pred             CHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .-..  ...++++++.+.++.++.|.++.+++-.|++
T Consensus       512 ~~~~--~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t  546 (570)
T 3c5e_A          512 DPEQ--LTKELQQHVKSVTAPYKYPRKIEFVLNLPKT  546 (570)
T ss_dssp             CHHH--HHHHHHHHHHHHSCGGGSCSEEEEESCCCBC
T ss_pred             chHH--HHHHHHHHHHhhCccccCCcEEEEeccCCCC
Confidence            0000  0126677777777777888887777766654

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.6e-70  Score=607.23  Aligned_cols=504  Identities=16%  Similarity=0.202  Sum_probs=400.0

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..+++.++|+++++++||++|+++.   ++..+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3567899999999999999999986   4334455889999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH---------Hhccccccc-ccCccEEEEecCCcHHHHHH
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM  189 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~  189 (620)
                      ||+++|++++|+++.++.+++.+++++++++++|+++....         .+....... ...+..+++++......   
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  227 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---  227 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence            99999999999999999999999999999999999876421         111111110 01345666665321100   


Q ss_pred             HhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCcE
Q 007047          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (620)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~  268 (620)
                       .........|++++..... ........++|+++|+|||||||.||||++||.+++..+.. ....+     ++.++|+
T Consensus       228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  300 (652)
T 1pg4_A          228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI  300 (652)
T ss_dssp             -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred             -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence             0000123567777764322 12233456899999999999999999999999998876643 33344     7889999


Q ss_pred             EEEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007047          269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (620)
Q Consensus       269 ~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (620)
                      +++..|++|..++. .++.+|+.|+++++.+.     ++..+++.++++++|+++++|++++.+.+....          
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------  370 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK----------  370 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence            99999999999984 57788999999999863     789999999999999999999999988642110          


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCCC
Q 007047          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (620)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE  419 (620)
                                               .....++        ++||.+++||+++++++.+++.+.+|   +++++.||+||
T Consensus       371 -------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  417 (652)
T 1pg4_A          371 -------------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE  417 (652)
T ss_dssp             -------------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred             -------------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence                                     0011112        48999999999999999999998887   89999999999


Q ss_pred             CCCceeeccCC-CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---cCC
Q 007047          420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (620)
Q Consensus       420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~dg  493 (620)
                      +++.++...+. .....+++|+|++|++++|+| +++.  +++.|+.|||+|+|  |+++.|||++++.+.+.|   .+|
T Consensus       418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g  494 (652)
T 1pg4_A          418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN  494 (652)
T ss_dssp             GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred             cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence            99876655432 234558999999999999999 6655  44556899999999  799999999999998876   389


Q ss_pred             cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHH
Q 007047          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (620)
Q Consensus       494 w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~  570 (620)
                      ||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++++..   
T Consensus       495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~---  570 (652)
T 1pg4_A          495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE---  570 (652)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---
T ss_pred             EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC---
Confidence            9999999999999999999999999998 7999999999999999999999999986643   58999999864310   


Q ss_pred             HHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccccc
Q 007047          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCF  616 (620)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  616 (620)
                           . .  .+  ...++++++.++++.++.|+.+.+++-.|++.
T Consensus       571 -----~-~--~~--~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~  606 (652)
T 1pg4_A          571 -----P-S--PE--LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR  606 (652)
T ss_dssp             -----C-C--HH--HHHHHHHHHHHHTCGGGCCSEEEECSCCCBCT
T ss_pred             -----C-C--HH--HHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCC
Confidence                 0 0  00  01256677777777777777777777666553

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=3e-70  Score=600.79  Aligned_cols=465  Identities=20%  Similarity=0.204  Sum_probs=316.3

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      +...++.++|.++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            45679999999999999999999864   3      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (620)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+        .....++..+...               
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~---------------  199 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA---------------  199 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc---------------
Confidence            99999999999999999999999999999999999987654322        1122222111100               


Q ss_pred             eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                            . ............++|+++++|||||||.||||++||+++.+.+... ..+     +++++|++++.+|++|.
T Consensus       200 ------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~  266 (570)
T 4gr5_A          200 ------S-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWD  266 (570)
T ss_dssp             -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSS
T ss_pred             ------c-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHH
Confidence                  0 0011122334678999999999999999999999999998776542 222     67889999999999987


Q ss_pred             HHHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (620)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (620)
                      .+....+.+++.|+++++.+.   ++..+++.++++++|++.++|+++..+.+....                       
T Consensus       267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------  323 (570)
T 4gr5_A          267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----------------------  323 (570)
T ss_dssp             THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence            766667788999999999863   899999999999999999999999988652110                       


Q ss_pred             HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC---
Q 007047          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (620)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---  431 (620)
                                       .+        +++|.+++||+++++++.+.+.+.+ ++++++.||+||++++++......   
T Consensus       324 -----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~  378 (570)
T 4gr5_A          324 -----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL  378 (570)
T ss_dssp             -----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred             -----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence                             01        3899999999999999988888777 799999999999988776654332   


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cC--------CcccccceEE
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ  502 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~d--------gw~~TGDl~~  502 (620)
                      .....++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.|||++|+.|.+.| .+        |||+|||+|+
T Consensus       379 ~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~  455 (570)
T 4gr5_A          379 SGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR  455 (570)
T ss_dssp             TSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred             CCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence            22235799999999999999 6654  55567899999999999999999999999998 33        6999999999


Q ss_pred             EccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCC
Q 007047          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (620)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~  579 (620)
                      +|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+....           
T Consensus       456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~-----------  523 (570)
T 4gr5_A          456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP-----------  523 (570)
T ss_dssp             ECTTSCEEEEEC--------------------------------------------------------------------
T ss_pred             ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-----------
Confidence            9999999999999999997 8999999999999999999999999997654   578888887532100           


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          580 FLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       580 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                          ....++++++.++++.++.|.++.+++-.|++
T Consensus       524 ----~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t  555 (570)
T 4gr5_A          524 ----PDAAELRRHVAEALPAYMVPVECVPVDELPRT  555 (570)
T ss_dssp             ------------------------------------
T ss_pred             ----cCHHHHHHHHHhhCccccCCcEEEEcccCCCC
Confidence                01125556666666666666666666555543

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.6e-69  Score=603.14  Aligned_cols=513  Identities=17%  Similarity=0.194  Sum_probs=404.4

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCcHhHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEA  117 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~  117 (620)
                      ...+++.++|+++++++||++|+++.   ++..+..+++||+||.++++++|+.|+ +.|+++||+|+|+++|+++++++
T Consensus        79 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a  155 (663)
T 1ry2_A           79 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT  155 (663)
T ss_dssp             CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred             CCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Confidence            34578999999999999999999986   433445588999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH---------HhcccccccccCccEEEEecCCcHHHHH
Q 007047          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKE  188 (620)
Q Consensus       118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~vi~~~~~~~~~~~  188 (620)
                      +|||+++|++++|+++.++.+++.+++++++++++|+++....         .+.... ...+.++.+++++......  
T Consensus       156 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~--  232 (663)
T 1ry2_A          156 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPS--  232 (663)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSS--
T ss_pred             HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCc--
Confidence            9999999999999999999999999999999999999876421         111111 1223456677665321000  


Q ss_pred             HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCc
Q 007047          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDD  267 (620)
Q Consensus       189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d  267 (620)
                       .........+|+++...... ........++|+++|+|||||||.||||+++|.+++..+.. ....+     ++.++|
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d  305 (663)
T 1ry2_A          233 -VAFHAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQED  305 (663)
T ss_dssp             -CCCCSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSC
T ss_pred             -cccCCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCc
Confidence             00001123567777654321 12334457899999999999999999999999998876643 33334     788999


Q ss_pred             EEEEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHH
Q 007047          268 VYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (620)
Q Consensus       268 ~~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (620)
                      ++++..|++|..+.. .++.+++.|+++++++.     ++..+++.++++++|+++++|++++.+.+....         
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---------  376 (663)
T 1ry2_A          306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---------  376 (663)
T ss_dssp             EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT---------
T ss_pred             EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc---------
Confidence            999999999999984 56788999999999863     689999999999999999999999887531100         


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCC
Q 007047          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  418 (620)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~T  418 (620)
                                                ..+..++        ++||.+++||+++++++.+++.+.+|   +++++.||+|
T Consensus       377 --------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T  422 (663)
T 1ry2_A          377 --------------------------YIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT  422 (663)
T ss_dssp             --------------------------SSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred             --------------------------ccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence                                      0011112        38999999999999999999999887   8999999999


Q ss_pred             CCCCceeeccC--CCccccCccccCccCeeEEEeecC-CCCCCCCCC-CCCceEEEec--CCcccccCCChhhhhccc--
Q 007047          419 ETCGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI--  490 (620)
Q Consensus       419 E~~~~~~~~~~--~~~~~~~~~G~~~~~~~i~i~~~~-~~~~~~~~~-g~~Gei~v~g--~~v~~gy~~~~~~t~~~~--  490 (620)
                      |+++.++....  .....++++|.|++|++++|+| + ++..  ++. |+.|||+|+|  |+++.|||++++.+.+.|  
T Consensus       423 E~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~--v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~  499 (663)
T 1ry2_A          423 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEE--LNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN  499 (663)
T ss_dssp             TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTC--EECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred             cccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCc--CCCCCcceEEEEecCCCchhcccccChHHHHHhhhc
Confidence            99987666543  2234558999999999999999 5 5443  334 6799999999  589999999999998887  


Q ss_pred             -cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHH
Q 007047          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED  566 (620)
Q Consensus       491 -~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~  566 (620)
                       .+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++++.
T Consensus       500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~  578 (663)
T 1ry2_A          500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS  578 (663)
T ss_dssp             SSTTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred             CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence             3899999999999999999999999999997 7999999999999999999999999997754   5899999987643


Q ss_pred             HHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccccc
Q 007047          567 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFS  617 (620)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  617 (620)
                      .......... ..     ...+++++++++++.++.|+.+.+++-.|++.+
T Consensus       579 ~~~~~~~~~~-~~-----l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~s  623 (663)
T 1ry2_A          579 SWSTATDDEL-QD-----IKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRS  623 (663)
T ss_dssp             ---------C-CS-----HHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTT
T ss_pred             ccccccchhH-HH-----HHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCc
Confidence            1000000000 00     023788888888999999999999888887643

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.9e-70  Score=591.64  Aligned_cols=475  Identities=23%  Similarity=0.292  Sum_probs=379.2

Q ss_pred             HHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCC
Q 007047           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (620)
Q Consensus        46 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G  125 (620)
                      ++|.+.++++|+++|+.+... ++     +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            478899999999999986411 22     579999999999999999999999999999999999999999999999999


Q ss_pred             CEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHh
Q 007047          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (620)
Q Consensus       126 ~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~  205 (620)
                      ++++|+++.++.+++.+++++++++++|++......+.......  . ..++.+.....             ..+.+...
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV--G-ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH--T-CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc--C-ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999987654332221111  1 12333332211             11111111


Q ss_pred             cCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-H
Q 007047          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (620)
Q Consensus       206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~  284 (620)
                      .. ..........++|+++++|||||||.||||++||+++.+.+......+     +++++|++++.+|++|.+++.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 122233456789999999999999999999999999999988877776     8899999999999999988764 5


Q ss_pred             HHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007047          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (620)
Q Consensus       285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (620)
                      +.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            678889999998876 8999999998  89999999999998864211                                


Q ss_pred             CchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCcc
Q 007047          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (620)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~  443 (620)
                           ....++        +++|.+++||+++++++.+.|.+.+|.++++.||+||++..++... ......+++|+|++
T Consensus       262 -----~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~  327 (503)
T 4fuq_A          262 -----LTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP  327 (503)
T ss_dssp             -----CSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred             -----ccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence                 001111        3899999999999999999999989999999999999987654333 33344588999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcC
Q 007047          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (620)
Q Consensus       444 ~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~  522 (620)
                      +++++|+|.+++  .+++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|+||+||+||+ 
T Consensus       328 ~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  404 (503)
T 4fuq_A          328 GVSARVTDPETG--KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-  404 (503)
T ss_dssp             TCEEEEECTTTC--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred             CeEEEEEECCCC--CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence            999999993333  456677899999999999999999999999999 6999999999999999999999999999997 


Q ss_pred             CceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHH
Q 007047          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (620)
Q Consensus       523 ~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  599 (620)
                      +|++|+|.|||++|.+||+|.+|+|++.++.   +.++|+|+++++.-                ....++++++.+.++.
T Consensus       405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----------------~~~~~l~~~l~~~L~~  468 (503)
T 4fuq_A          405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----------------IDEAQVLHGLDGQLAK  468 (503)
T ss_dssp             TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCHHHHHHHHBTTBCG
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC----------------CCHHHHHHHHHhhccc
Confidence            7999999999999999999999999986543   47889998754210                0012455556666666


Q ss_pred             HHHHCCCccCCccccc
Q 007047          600 AAERNKVIFANWDTGC  615 (620)
Q Consensus       600 ~~~~~~~~~~~~~~~~  615 (620)
                      ++.|.++.+++-.|++
T Consensus       469 ~~~P~~i~~v~~lP~t  484 (503)
T 4fuq_A          469 FKMPKKVIFVDDLPRN  484 (503)
T ss_dssp             GGCCSEEEEESCCCBC
T ss_pred             CCCCCEEEEECCCCCC
Confidence            6666666666655543

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=9.4e-70  Score=589.37  Aligned_cols=440  Identities=23%  Similarity=0.297  Sum_probs=325.9

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...|+.++|.++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4579999999999999999999864   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ........++.+++..              ..
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GP  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SS
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cC
Confidence            99999999999999999999999999999999999988766543333 2334556666665421              11


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      +.++...............++|+++++|||||||.||||++||+++++.+......+     +++++|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            222222111222334456789999999999999999999999999999998877766     889999999999999999


Q ss_pred             HHHHHHHH-hhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047          280 DRVIEEYF-FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (620)
Q Consensus       280 g~~~~~~~-l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (620)
                      ++...+.+ +..|+++++...++..+++.++++++|+++++|+++..+++...                           
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------------------------  267 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA---------------------------  267 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence            98876665 45555555554499999999999999999999999999875320                           


Q ss_pred             ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCccccCc
Q 007047          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (620)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~  437 (620)
                                  ..++        +++|.++++|++   ++.+.+.+.+ ++++++.||+||++++++.......  ..+
T Consensus       268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~  322 (509)
T 3ivr_A          268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS  322 (509)
T ss_dssp             ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred             ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence                        0111        389999999987   7788888888 8999999999999987776554332  256


Q ss_pred             cccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecc--
Q 007047          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--  515 (620)
Q Consensus       438 ~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~--  515 (620)
                      +|.|+++++++|+| +++  .+++.|+.|||+|+|++++.|||++|+.|.+.|.+|||+|||+|++++||+++|+||+  
T Consensus       323 ~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~  399 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE  399 (509)
T ss_dssp             CCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred             ccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence            99999999999999 665  4556678999999999999999999999999999999999999999999999999999  


Q ss_pred             cCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       516 ~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      ||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.+
T Consensus       400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~  450 (509)
T 3ivr_A          400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP  450 (509)
T ss_dssp             ----------------------------------------------------
T ss_pred             ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCC
Confidence            999996 7999999999999999999999999987754   47888888754

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.2e-68  Score=583.52  Aligned_cols=491  Identities=21%  Similarity=0.224  Sum_probs=382.8

Q ss_pred             CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      +|..++++.++|.++++ +||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++
T Consensus        19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~   88 (529)
T 2v7b_A           19 PPALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV   88 (529)
T ss_dssp             ---CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred             CccceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence            34566789999999999 9999999864   2      479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCc-cEEEEecCCcHHHHHHHhhcCC
Q 007047          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI  195 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~  195 (620)
                      ++|||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++..+....        ...
T Consensus        89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~  159 (529)
T 2v7b_A           89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPR  159 (529)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred             HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------ccc
Confidence            999999999999999999999999999999999999999876654433211 11122 34444443211        001


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHH-HHHhhhhhhhcccccCCCCCCcEEEEecC
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (620)
                      ....++++...... ........++|+++++|||||||.||||++||+++ ..........+     ++.++|++++.+|
T Consensus       160 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p  233 (529)
T 2v7b_A          160 LAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK  233 (529)
T ss_dssp             CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred             cccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence            12346666553221 12233467899999999999999999999999999 55555444434     6789999999999


Q ss_pred             hhHHHHHHH-HHHHhhcCcEEEEec-C-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047          275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (620)
Q Consensus       275 l~h~~g~~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (620)
                      ++|.+++.. .+.++..|+++++.. . ++..+++.++++++|+++++|+++..+++...     .              
T Consensus       234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~--------------  294 (529)
T 2v7b_A          234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L--------------  294 (529)
T ss_dssp             TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C--------------
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c--------------
Confidence            999999875 567899999999873 3 89999999999999999999999988753110     0              


Q ss_pred             HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC
Q 007047          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (620)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (620)
                                    ....            ..++|.+++||+++++++.+.+.+.+|+++++.||+||++.+++......
T Consensus       295 --------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~  348 (529)
T 2v7b_A          295 --------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA  348 (529)
T ss_dssp             --------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred             --------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence                          0000            02789999999999999999999988999999999999977665554433


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEE
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~  511 (620)
                       ...+++|.|+++++++|+| +++.  +++.|+.|||+|+|++++.|||++++.|.+.|.+|||+|||+|++++||+|+|
T Consensus       349 -~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~  424 (529)
T 2v7b_A          349 -VEYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY  424 (529)
T ss_dssp             -CCTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred             -CccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence             3448999999999999999 6654  45567899999999999999999999999999999999999999999999999


Q ss_pred             eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHH
Q 007047          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (620)
Q Consensus       512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (620)
                      +||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+  .+.++|+|++.++..         . . ...  ..++
T Consensus       425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~---------~-~-~~~--~~~l  490 (529)
T 2v7b_A          425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA---------P-S-EIL--AEEL  490 (529)
T ss_dssp             EEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC---------C-C-HHH--HHHH
T ss_pred             eCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC---------c-c-hhH--HHHH
Confidence            9999999997 799999999999999999999999998722  247889999864310         0 0 000  1256


Q ss_pred             HHHHHHHHHHHHHHCCCccCCccccc
Q 007047          590 QNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       590 ~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ++++.+.++.++.|.++.+++-.|++
T Consensus       491 ~~~l~~~L~~~~~P~~i~~v~~lP~t  516 (529)
T 2v7b_A          491 KAFVKDRLAPHKYPRDIVFVDDLPKT  516 (529)
T ss_dssp             HHHHHTTSCTTTSCSEEEEESCCCBC
T ss_pred             HHHHHhhcchhhCCeEEEEeccCCCC
Confidence            77777777777778888777766654

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.3e-68  Score=585.88  Aligned_cols=460  Identities=20%  Similarity=0.230  Sum_probs=374.3

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999864   2      5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.+++++++++++|++......+....     ....+..+....                 
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------------  166 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT-----------------  166 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence            9999999999999999999999999999999999987655432211     111222222110                 


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                        +. .. .......+..++|+++++|||||||.||||++||+++.+.+......+     +++++|++++.+|++|..+
T Consensus       167 --~~-~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  237 (563)
T 1amu_A          167 --IK-IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS  237 (563)
T ss_dssp             --TT-TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred             --hc-cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence              00 00 111112345689999999999999999999999999998887766655     7889999999999999998


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +...+.+++.|+++++.+.    ++..+++.++++++|++.++|+++..+...                           
T Consensus       238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------  290 (563)
T 1amu_A          238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---------------------------  290 (563)
T ss_dssp             HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred             HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence            8777888999999999763    789999999999999999999998765320                           


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC--ccc
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM  434 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~  434 (620)
                                      .        .+++|.+++||+++++++.+.|.+  .+.+++.||+||++.+++......  ...
T Consensus       291 ----------------~--------~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  344 (563)
T 1amu_A          291 ----------------R--------ILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH  344 (563)
T ss_dssp             ----------------T--------CCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred             ----------------c--------cccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence                            0        138999999999999999999877  478999999999998766554322  223


Q ss_pred             cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-------CCcccccceEEEccCC
Q 007047          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (620)
Q Consensus       435 ~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-------dgw~~TGDl~~~~~dG  507 (620)
                      ..++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.|||++|+.|.+.|.       +|||+|||+|++|+||
T Consensus       345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG  421 (563)
T 1amu_A          345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  421 (563)
T ss_dssp             SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence            46899999999999999 6654  455678999999999999999999999999984       3599999999999999


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  584 (620)
                      +|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++.+.                  
T Consensus       422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------  482 (563)
T 1amu_A          422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------  482 (563)
T ss_dssp             CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------
T ss_pred             eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------
Confidence            99999999999997 8999999999999999999999999987653   4789999875210                  


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          585 SLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ...++++++.+.++.++.|.++.+++-.|++
T Consensus       483 ~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t  513 (563)
T 1amu_A          483 PLEQLRQFSSEELPTYMIPSYFIQLDKMPLT  513 (563)
T ss_dssp             CHHHHHHHHHHHSCGGGSCSEEEECSSCCBC
T ss_pred             CHHHHHHHHHhhCchhhCCcEEEEecccCCC
Confidence            0125566666666667667766666665543

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.7e-68  Score=589.70  Aligned_cols=438  Identities=18%  Similarity=0.146  Sum_probs=361.2

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...|+.++|.++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4579999999999999999999875   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (620)
                      ||+++|++++|++|.++.+++.++++++++++++++.......        .....+ .                     
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~---------------------  145 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P---------------------  145 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E---------------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e---------------------
Confidence            9999999999999999999999999999999999765432211        011110 0                     


Q ss_pred             HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (620)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (620)
                      .....  ............++|+|+++|||||||.||||+++|+++.+.+.. ...+     .+.++|++++.+|++|..
T Consensus       146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~  217 (620)
T 4dg8_A          146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA  217 (620)
T ss_dssp             GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred             eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence            00000  001111223346899999999999999999999999999887765 3333     788999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      ++...+.++..|+++++.+.   ++..+.+.++++++|+++++|+++..+.+...                         
T Consensus       218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------  272 (620)
T 4dg8_A          218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------  272 (620)
T ss_dssp             HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred             HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence            98888889999999999742   89999999999999999999999998864200                         


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC---c
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  432 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~  432 (620)
                                     ..+        +++|.+++||++++++..+.+.+.+ ++++++.||+||++.+++......   .
T Consensus       273 ---------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  329 (620)
T 4dg8_A          273 ---------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE  329 (620)
T ss_dssp             ---------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred             ---------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence                           011        3899999999999988887776655 899999999999998776543322   2


Q ss_pred             cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC--------CcccccceEEEc
Q 007047          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL  504 (620)
Q Consensus       433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d--------gw~~TGDl~~~~  504 (620)
                      ....++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.|||++|+.|.+.|.+        +||+|||+|+++
T Consensus       330 ~~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~  407 (620)
T 4dg8_A          330 EDDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD  407 (620)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence            3346899999999999999 6554 33556789999999999999999999999999943        799999999999


Q ss_pred             cCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC--ceEEEEEEcChHHHHHHHHHCC
Q 007047          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNG  575 (620)
Q Consensus       505 ~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~vv~~~~~~~~~~~~~~  575 (620)
                      +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.  ..++++++...+.+.+++.++.
T Consensus       408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~L  479 (620)
T 4dg8_A          408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQL  479 (620)
T ss_dssp             TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHS
T ss_pred             CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhC
Confidence            99999999999999998 7999999999999999999999999986544  3666666665444444444443

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2e-68  Score=578.97  Aligned_cols=470  Identities=17%  Similarity=0.205  Sum_probs=386.3

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      +++.++|.++|+++||++|+++.   +      +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999864   2      6899999999999999999875 889999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.+++++++++++|++.........                            ......++
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~----------------------------~~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG----------------------------QQIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC----------------------------CSSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc----------------------------cccceecH
Confidence            99999999999999999999999999999999997543211100                            01123445


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +++...............++|+++++|||||||.||||++||+++.+.+......+     ++..+|++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            55554433322333446789999999999999999999999999999988877666     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +...+.++..|+++++.+.    ++..+++.++++++|+++++|+++..+++...                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8878889999999999864    78999999999999999999999988763210                         


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC----
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----  431 (620)
                                  .....+        +++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       254 ------------~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          254 ------------FSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ------------cccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                        000111        3899999999999999999999988 899999999999998776544322    


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc--cCC--cccccceEEEccCC
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG  507 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~--~dg--w~~TGDl~~~~~dG  507 (620)
                      .....++|.|+|+++++|+| +++.  +++.|+.|||+|+|+.++.|||++|+.|.+.|  .+|  ||+|||+|++ +||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG  389 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG  389 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence            12236799999999999999 6654  55667899999999999999999999999999  345  8999999999 699


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  584 (620)
                      +|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.....          .+  
T Consensus       390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~----------~~--  456 (511)
T 3e7w_A          390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE----------FQ--  456 (511)
T ss_dssp             EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSH----------HH--
T ss_pred             eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccch----------hh--
Confidence            99999999999997 8999999999999999999999999986644   48999999864321000          00  


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          585 SLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ...++++++.+.++.++.|.++.+++-.|++
T Consensus       457 ~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t  487 (511)
T 3e7w_A          457 LTSAIKKELAASLPAYMIPRKFIYQDHIQMT  487 (511)
T ss_dssp             HHHHHHHHHHHHSCGGGSCSEEEECSCCCBC
T ss_pred             HHHHHHHHHHhhCchhhCCeeEEEeccCCCC
Confidence            0125666677777777777777777666654

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=7.1e-69  Score=582.89  Aligned_cols=471  Identities=18%  Similarity=0.194  Sum_probs=375.5

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +|+.++|.++++++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47999999999999999999875   3      57999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (620)
                      +++|++++|+++.++.+++.+++++++++++|++.......        ... .++...                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence            99999999999999999999999999999999975432100        000 111110                  111


Q ss_pred             HHHh-cCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       202 ~l~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      ++.. .............++|+++++|||||||.||||++||+++.+.+......+     ++..+|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            1111 111122233456789999999999999999999999999999988877766     7899999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      +...+.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            8878889999999999864    78999999999999999999999988753110                         


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC----
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----  431 (620)
                                  ....++        +++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++......    
T Consensus       255 ------------~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          255 ------------FSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ------------CSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ------------ccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                        011112        4899999999999999999999988 899999999999998776654332    


Q ss_pred             ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc----CCcccccceEEEccCC
Q 007047          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG  507 (620)
Q Consensus       432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~----dgw~~TGDl~~~~~dG  507 (620)
                      .....++|.|.++++++|+| +++.  +++.|+.|||+|+|++++.|||++|+.|.+.|.    +|||+|||+|++ +||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG  390 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG  390 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred             ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence            12346899999999999999 6654  455678999999999999999999999999983    569999999999 799


Q ss_pred             cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (620)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  584 (620)
                      +|+|.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++...+.          .+  
T Consensus       391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~----------~~--  457 (512)
T 3fce_A          391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKE----------FK--  457 (512)
T ss_dssp             EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSH----------HH--
T ss_pred             EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccch----------hh--
Confidence            99999999999997 8999999999999999999999999986543   47899999864210000          00  


Q ss_pred             ccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          585 SLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      ...++++++.+.++.++.|.++.+++-.|++
T Consensus       458 ~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t  488 (512)
T 3fce_A          458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMT  488 (512)
T ss_dssp             HHHHHHHHHHTTSCGGGSCSEEEECSCCCBC
T ss_pred             hHHHHHHHHHhhCchhcCCeEEEEecccCCC
Confidence            0114555555555555566665555555543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=6.6e-68  Score=587.32  Aligned_cols=458  Identities=18%  Similarity=0.201  Sum_probs=378.8

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ...++.++|.++++  ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            34789999999887  999999864   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCC
Q 007047          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (620)
Q Consensus       120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (620)
                      ||+++|++++|+++.++.+++.++++++++++++++.....    ...............+........           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            99999999999999999999999999999999999876531    111111112234444555443221           


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl  275 (620)
                        ..+.+...... ......+..++++|+++|||||||.||||+++|+++.+.+......+     ++.++|++++++|+
T Consensus       163 --~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~  234 (617)
T 3rg2_A          163 --HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA  234 (617)
T ss_dssp             --TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred             --cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence              12333333221 22233455789999999999999999999999999999998877776     78999999999999


Q ss_pred             hHHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047          276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (620)
Q Consensus       276 ~h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (620)
                      +|.+++..  .+.+++.|+++++.+. ++..+...++++++|++.++|+++..+.+........                
T Consensus       235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------  298 (617)
T 3rg2_A          235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR----------------  298 (617)
T ss_dssp             TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred             hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence            99999874  6778999999999876 8999999999999999999999999987643321000                


Q ss_pred             HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCc
Q 007047          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (620)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  432 (620)
                                         .++        +++|.+++||+++++++.+++.+.+++++++.||+||++..++.......
T Consensus       299 -------------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  351 (617)
T 3rg2_A          299 -------------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE  351 (617)
T ss_dssp             -------------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred             -------------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence                               011        38999999999999999999999889999999999999865554433333


Q ss_pred             cccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEE
Q 007047          433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (620)
Q Consensus       433 ~~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~  510 (620)
                      ....++|.|+ ++.+++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.| .+|||+|||+|++++||+|+
T Consensus       352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~  428 (617)
T 3rg2_A          352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT  428 (617)
T ss_dssp             HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred             ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence            3346789887 788999999 6654  55667899999999999999999999999999 79999999999999999999


Q ss_pred             EeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC----hHHHHHHHHHC
Q 007047          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC----EEDTKKWAYSN  574 (620)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~----~~~~~~~~~~~  574 (620)
                      |+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|++++.    .+++.++++++
T Consensus       429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~  498 (617)
T 3rg2_A          429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQ  498 (617)
T ss_dssp             EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTT
T ss_pred             EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhC
Confidence            99999999997 7999999999999999999999999986543   5888888864    46777787763

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=5e-68  Score=618.26  Aligned_cols=480  Identities=25%  Similarity=0.338  Sum_probs=343.9

Q ss_pred             CCCCCCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH
Q 007047           16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA   95 (620)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~   95 (620)
                      ...+....+|++......+    +...|+.++|.++++++||++|+++.   +..    +++||+||.++++++|++|++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~  107 (979)
T 3tsy_A           39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK  107 (979)
T ss_dssp             ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence            3344556677765433222    34589999999999999999999864   322    689999999999999999999


Q ss_pred             CCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccE
Q 007047           96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV  175 (620)
Q Consensus        96 ~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  175 (620)
                      .|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+......  .. ..
T Consensus       108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~  184 (979)
T 3tsy_A          108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV  184 (979)
T ss_dssp             TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred             cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence            9999999999999999999999999999999999999999999999999999999999998765544322211  11 23


Q ss_pred             EEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccC--cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhh
Q 007047          176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD  253 (620)
Q Consensus       176 vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~  253 (620)
                      ++.+++...      .........+.++.......  ........++|+++|+|||||||.||||+++|++++..+....
T Consensus       185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  258 (979)
T 3tsy_A          185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV  258 (979)
T ss_dssp             EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred             EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence            444443211      01112345566555433221  2233456799999999999999999999999999998876643


Q ss_pred             hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHH
Q 007047          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (620)
Q Consensus       254 ~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  331 (620)
                      ... .....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus       259 ~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  337 (979)
T 3tsy_A          259 DGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE  337 (979)
T ss_dssp             CSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred             Hhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence            321 01125788999999999999999865 5667999999999876 89999999999999999999999998865211


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCe
Q 007047          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF  410 (620)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~  410 (620)
                                                           ....++        +++|.+++||+++++++.+++.+.+ +++
T Consensus       338 -------------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  372 (979)
T 3tsy_A          338 -------------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAK  372 (979)
T ss_dssp             -------------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred             -------------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence                                                 111112        3899999999999999999999988 899


Q ss_pred             eEeecCCCCCCCceeecc----CCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhh
Q 007047          411 LVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT  486 (620)
Q Consensus       411 v~~~YG~TE~~~~~~~~~----~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t  486 (620)
                      +++.||+||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.|||++|+.|
T Consensus       373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t  450 (979)
T 3tsy_A          373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAAT  450 (979)
T ss_dssp             EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred             EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhhh
Confidence            999999999998766542    11233458899999999999999 4433 45667789999999999999999999999


Q ss_pred             hccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc
Q 007047          487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (620)
Q Consensus       487 ~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~  562 (620)
                      .+.| .+|||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++
T Consensus       451 ~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~  529 (979)
T 3tsy_A          451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK  529 (979)
T ss_dssp             HHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred             hhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE
Confidence            9999 7999999999999999999999999999997 7999999999999999999999999987654   478899986


Q ss_pred             Ch
Q 007047          563 CE  564 (620)
Q Consensus       563 ~~  564 (620)
                      .+
T Consensus       530 ~~  531 (979)
T 3tsy_A          530 SK  531 (979)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.4e-68  Score=578.58  Aligned_cols=468  Identities=25%  Similarity=0.301  Sum_probs=373.0

Q ss_pred             CCCCCcccHHHHHHHHHHhCCC-CceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH
Q 007047           36 SVDSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (620)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~  114 (620)
                      +...+++++.++|.++++++|+ ++|+++.   +      +++||+||.++++++|..|.     .|++|+++++|++++
T Consensus        16 ~~~~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~   81 (505)
T 3nyq_A           16 PRGSHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMET   81 (505)
T ss_dssp             --------CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHH
T ss_pred             cCCcccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHH
Confidence            3445678999999999999997 9999874   3      68999999999999998774     489999999999999


Q ss_pred             HHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcC
Q 007047          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (620)
Q Consensus       115 ~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (620)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|++.+...      ......+..+ .+...            
T Consensus        82 ~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~------------  142 (505)
T 3nyq_A           82 GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR------------  142 (505)
T ss_dssp             HHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT------------
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc------------
Confidence            9999999999999999999999999999999999999999865210      0011111111 11100            


Q ss_pred             CceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecC
Q 007047          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (620)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (620)
                                   ...........++|+++++|||||||.||||++||+++.+.+......+     ++.++|++++.+|
T Consensus       143 -------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p  204 (505)
T 3nyq_A          143 -------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLP  204 (505)
T ss_dssp             -------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCC
T ss_pred             -------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEecc
Confidence                         0111223345789999999999999999999999999999998877776     7889999999999


Q ss_pred             hhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047          275 LAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (620)
Q Consensus       275 l~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (620)
                      ++|..++.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+.....                 
T Consensus       205 ~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------  266 (505)
T 3nyq_A          205 LFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-----------------  266 (505)
T ss_dssp             TTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-----------------
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-----------------
Confidence            999999874 6778999999999876 889999999 88999999999999998764321100                 


Q ss_pred             HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCc
Q 007047          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (620)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  432 (620)
                                       ....++        ++|.+++||+++++++.+++.+.++.++++.||+||+++.++...... 
T Consensus       267 -----------------~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-  320 (505)
T 3nyq_A          267 -----------------LAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-  320 (505)
T ss_dssp             -----------------HHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-
T ss_pred             -----------------hhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-
Confidence                             011122        789999999999999999999988999999999999987766554433 


Q ss_pred             cccCccccCccCeeEEEeecCCCCCCCC-CCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEE
Q 007047          433 CMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (620)
Q Consensus       433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~-~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~  510 (620)
                      ...+++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.|||++|+.|.+.| .+|||+|||+|++++||+|+
T Consensus       321 ~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~  399 (505)
T 3nyq_A          321 PRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVR  399 (505)
T ss_dssp             CCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEE
T ss_pred             CCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEE
Confidence            3448999999999999999 67665554 447899999999999999999999999999 69999999999999999999


Q ss_pred             Eeecc-cCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhcc
Q 007047          511 IIDRK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (620)
Q Consensus       511 ~~GR~-~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  586 (620)
                      |+||+ ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.+..       .  .      ...
T Consensus       400 ~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~-------~--~------~~~  463 (505)
T 3nyq_A          400 IVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA-------A--P------PAL  463 (505)
T ss_dssp             EEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT-------S--C------CCH
T ss_pred             EeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC-------C--C------CCH
Confidence            99998 599997 7999999999999999999999999987653   5899999986421       0  0      011


Q ss_pred             HHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          587 VQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       587 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      .++++++.+.++.++.|..+.+++-.|++
T Consensus       464 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t  492 (505)
T 3nyq_A          464 GTLADHVAARLAPHKRPRVVRYLDAVPRN  492 (505)
T ss_dssp             HHHHHHHHHHTCGGGSCSEEEECSCCCC-
T ss_pred             HHHHHHHHhhCCCCcCccEEEEECCCCCC
Confidence            26777888888888888888887777654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=7.2e-68  Score=576.47  Aligned_cols=475  Identities=16%  Similarity=0.150  Sum_probs=372.9

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ++++.++|.++++++||++|+.+.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999864   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.+++++++++++|++.+....+        ... .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC-c---------------------ccch
Confidence            999999999999999999999999999999999987643211        011 1                     1122


Q ss_pred             HHHHhcC--ccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (620)
Q Consensus       201 ~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (620)
                      .++....  ...........++|+++++|||||||.||||++||+++.+.+.......   ......++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            2221111  0111223456789999999999999999999999999998776654431   1267889999999999998


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      .++..++.++..|+++++.+.    ++..+++.+.++++|++.++|+++..+.....                       
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------  257 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD-----------------------  257 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence            888777888999999998764    78999999999999999999999987653110                       


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC--
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--  431 (620)
                                    ....++        +++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......  
T Consensus       258 --------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          258 --------------FCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             --------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             --------------cccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                          000111        3899999999999999999998888 899999999999998776554322  


Q ss_pred             --ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc----cCCcccccceEEEcc
Q 007047          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP  505 (620)
Q Consensus       432 --~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~----~dgw~~TGDl~~~~~  505 (620)
                        .....++|+|+|+++++|+| +++.  +++.|+.|||+|+|++++.|||++|+.|.+.|    .+|||+|||+|++|+
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~  392 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE  392 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence              12336899999999999999 6654  45567899999999999999999999999998    357999999999999


Q ss_pred             CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC----ceEEEEEEcChHHHHHHHHHCCCCCCHH
Q 007047          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (620)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~  581 (620)
                      ||++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+.    +.++|+|+++++....+       ..  
T Consensus       393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~-------~~--  462 (521)
T 3l8c_A          393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF-------DR--  462 (521)
T ss_dssp             SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGC-------SS--
T ss_pred             CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccc-------cc--
Confidence            9999999999999997 7999999999999999999999999986532    47889999865321000       00  


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       582 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                      +.....++++++.+.++.++.|.++.+++-.|++
T Consensus       463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t  496 (521)
T 3l8c_A          463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLT  496 (521)
T ss_dssp             HHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBC
T ss_pred             chhhHHHHHHHHHhhCccccCCeEEEEecccCCC
Confidence            0001125566666666667777777666666654

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.3e-68  Score=574.09  Aligned_cols=474  Identities=21%  Similarity=0.210  Sum_probs=366.9

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +||.++|.++++++||++|+++.   +      +++||+||.++++++|++|++.   +||+|+|+++|++++++++|||
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~   68 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC   68 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence            36778999999999999999864   3      5799999999999999999986   8999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCce-eeH
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSW  200 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~  200 (620)
                      +++|++++|+++.++.+++.+++++++++++|++............  ...+..+..........   ........ ...
T Consensus        69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  143 (501)
T 3ipl_A           69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN  143 (501)
T ss_dssp             HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred             HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence            9999999999999999999999999999999998775443321111  01111111100000000   00000000 001


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                      +.+...............++|+++++|||||||.||||++||+++...+......+     +++++|++++.+|++|.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  218 (501)
T 3ipl_A          144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG  218 (501)
T ss_dssp             ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred             hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence            11111111111223346789999999999999999999999999999988877766     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007047          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (620)
                      +...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....                           
T Consensus       219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------  271 (501)
T 3ipl_A          219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------  271 (501)
T ss_dssp             HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred             HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence            9888889999999999876 999999999999999999999999988652110                           


Q ss_pred             cCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-ccccCcc
Q 007047          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTA  438 (620)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~~  438 (620)
                                           ...++|.+++||+++++++.+++.+ +++++++.||+||+++.++...... ....+++
T Consensus       272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  329 (501)
T 3ipl_A          272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV  329 (501)
T ss_dssp             ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred             ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence                                 0027899999999999999999987 5999999999999987655443322 3345789


Q ss_pred             ccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCe
Q 007047          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (620)
Q Consensus       439 G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~  518 (620)
                      |.|+++++++|+| ++       .|+.|||+|+|+.++.||+++++.|.+ |.+|||+|||+|++|+||+++++||+||+
T Consensus       330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~  400 (501)
T 3ipl_A          330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL  400 (501)
T ss_dssp             BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred             CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence            9999999999999 43       345799999999999999999999988 88999999999999999999999999999


Q ss_pred             EEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHH
Q 007047          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (620)
Q Consensus       519 i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (620)
                      ||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|++++..+.                  ...++++++.+
T Consensus       401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~~~l~~~l~~  461 (501)
T 3ipl_A          401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SKAQLIAYLSK  461 (501)
T ss_dssp             EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHHHHHHHHHH
T ss_pred             EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CHHHHHHHHHh
Confidence            996 8999999999999999999999999987654   4778888863210                  01144455555


Q ss_pred             HHHHHHHHCCCccCCcccc
Q 007047          596 ELKNAAERNKVIFANWDTG  614 (620)
Q Consensus       596 ~i~~~~~~~~~~~~~~~~~  614 (620)
                      .++.++.|.++.+++-.|+
T Consensus       462 ~L~~~~~P~~i~~v~~lP~  480 (501)
T 3ipl_A          462 HLAKYKVPKHFEKVDTLPY  480 (501)
T ss_dssp             HSCGGGSCSEEEECSSCC-
T ss_pred             hCccccCCCEEEEecccCC
Confidence            5555555555555554443

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=2.7e-66  Score=569.21  Aligned_cols=494  Identities=16%  Similarity=0.111  Sum_probs=318.8

Q ss_pred             CCCCcccHHHHHHHHHHhCCCCceeEeeeccCC----CCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 007047           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (620)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~  112 (620)
                      ...+..|+.++|.++|+++||++|+++.   ++    ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus        15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~   90 (562)
T 3ite_A           15 QYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL   90 (562)
T ss_dssp             ---CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred             eecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence            3355688999999999999999999976   32    12234789999999999999999999999 7999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (620)
Q Consensus       113 e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (620)
                      ++++++|||+++|++++|+++.++.+++.+++++++++++|+++.......      ......++....           
T Consensus        91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-----------  153 (562)
T 3ite_A           91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN-----------  153 (562)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-----------
T ss_pred             HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-----------
Confidence            999999999999999999999999999999999999999999876543221      011122222111           


Q ss_pred             cCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcc---cccCCCCCCcEE
Q 007047          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVY  269 (620)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~  269 (620)
                           ..+.+...... .........++++++++|||||||.||||++||+++.+.+..+...+.   .....+...+++
T Consensus       154 -----~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (562)
T 3ite_A          154 -----QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF  227 (562)
T ss_dssp             -----HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEE
T ss_pred             -----hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceE
Confidence                 11222222211 111223456788999999999999999999999999988776544321   111257788999


Q ss_pred             EEecChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007047          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (620)
Q Consensus       270 ~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (620)
                      ++..|++|..++...+.++..|+++++.+.  .+..+.+.++++++|+++++|+++..+...                  
T Consensus       228 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------  289 (562)
T 3ite_A          228 LCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------  289 (562)
T ss_dssp             ECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------
T ss_pred             EEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------
Confidence            999999998887777888999999988764  467888999999999999999987764210                  


Q ss_pred             HHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeec
Q 007047          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (620)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  427 (620)
                                             ..++        +++|.+++||+++++++.+.|++.+++.+++.||+||++..++..
T Consensus       290 -----------------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  338 (562)
T 3ite_A          290 -----------------------PEDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG  338 (562)
T ss_dssp             -----------------------GGGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred             -----------------------cccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence                                   0011        389999999999999999999988899999999999999877776


Q ss_pred             cCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCC--cccccceEEEcc
Q 007047          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILP  505 (620)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dg--w~~TGDl~~~~~  505 (620)
                      ........+++|.|+++++++|++ ++++ .+++.|+.|||+|+|+.++.|||++|+.|...+.+|  ||+|||+|++|+
T Consensus       339 ~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~  416 (562)
T 3ite_A          339 RILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA  416 (562)
T ss_dssp             ECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT
T ss_pred             eecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC
Confidence            555444457899999999999998 4433 456677899999999999999999999998887777  999999999999


Q ss_pred             CCcEEEeecccCeEEcCCceeeccHHHHHHHhcC-cCcceEEEEecCCC---c-eEEEEEEcChHHHHHHHHHCCCCCCH
Q 007047          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLK---S-MLVAVVVPCEEDTKKWAYSNGHAGSF  580 (620)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~-p~V~~~~V~~~~~~---~-~~~a~vv~~~~~~~~~~~~~~~~~~~  580 (620)
                      ||+|+|+||+||+||+ +|++|+|.|||++|.+| |.+.+++|++.+++   + .+++++.............  .....
T Consensus       417 dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~  493 (562)
T 3ite_A          417 DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRW--INENY  493 (562)
T ss_dssp             TSCEEEEEEC----------------------------------------------------------------------
T ss_pred             CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccc--cccch
Confidence            9999999999999997 89999999999999998 88888888876654   2 3444444332211110000  00000


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCccCCccc
Q 007047          581 LELCSLVQLQNYILSELKNAAERNKVIFANWDT  613 (620)
Q Consensus       581 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  613 (620)
                      .  ....++++++.++++.++.|+.+.+++-.|
T Consensus       494 ~--~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP  524 (562)
T 3ite_A          494 K--EINNSLRQACEQTLPAYMVPDFIIPISFIP  524 (562)
T ss_dssp             ---------------------------------
T ss_pred             h--hHHHHHHHHHHhhCCcccCCcEEEEeccCC
Confidence            0  012256666666666666666666666555

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=7.6e-66  Score=569.53  Aligned_cols=447  Identities=17%  Similarity=0.222  Sum_probs=362.2

Q ss_pred             CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (620)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~  118 (620)
                      ....|+.++|.++++++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            34689999999999999999999986   42  23378999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEecCCCCC---hhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCC
Q 007047          119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (620)
Q Consensus       119 lA~~~~G~v~vpi~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (620)
                      |||+++|++++|+++.++   .+++.++++.+++++++++.+....+........+....+..+                
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  146 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI----------------  146 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence            999999999999999884   4789999999999999999887766543321111111111111                


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl  275 (620)
                         ..+++.... ..........++|+++++|||||||.||||++||++++..+......+     +++.+|++++++|+
T Consensus       147 ---~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~  217 (590)
T 3kxw_A          147 ---ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP  217 (590)
T ss_dssp             ---EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred             ---echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence               111111100 112233456789999999999999999999999999999998877766     88999999999999


Q ss_pred             hHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007047          276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (620)
Q Consensus       276 ~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (620)
                      +|.+++.. .+.+++.|+++++.+.     ++..+++.++++++|++.++|.++..+.+.+...                
T Consensus       218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------  281 (590)
T 3kxw_A          218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE----------------  281 (590)
T ss_dssp             TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred             CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence            99999986 7778999999999864     7899999999999999999999999886532111                


Q ss_pred             HHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC------CeeEeecCCCCCCCc
Q 007047          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP  423 (620)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~  423 (620)
                                        .....++        +++|.+++||+++++++.++|.+.++      .++++.||+||++++
T Consensus       282 ------------------~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~  335 (590)
T 3kxw_A          282 ------------------KKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL  335 (590)
T ss_dssp             ------------------GGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred             ------------------hccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence                              0111122        38999999999999999999988873      479999999999988


Q ss_pred             eeeccCC--------------------------CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCccc
Q 007047          424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (620)
Q Consensus       424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~  477 (620)
                      ++.....                          ......++|.|+++  ++|+| +++ ..+++.|+.|||+|+|++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK  411 (590)
T ss_dssp             EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred             eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence            7754321                          11233688999988  88888 443 356667889999999999999


Q ss_pred             ccCCChhhhhccccC-------C--cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHH-hcCcCcc--eE
Q 007047          478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DI  545 (620)
Q Consensus       478 gy~~~~~~t~~~~~d-------g--w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l-~~~p~V~--~~  545 (620)
                      |||++|+.|.++|.+       |  ||+|||+|++| ||+|+|+||+||+||+ +|++|+|.|||++| ..||.|.  +|
T Consensus       412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~  489 (590)
T 3kxw_A          412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC  489 (590)
T ss_dssp             CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred             cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence            999999999999943       5  99999999998 9999999999999998 79999999999999 8999998  78


Q ss_pred             EEEecCC--CceEEEEEEcC
Q 007047          546 WVYGDSL--KSMLVAVVVPC  563 (620)
Q Consensus       546 ~V~~~~~--~~~~~a~vv~~  563 (620)
                      +|++.++  .+.+++++++.
T Consensus       490 ~v~~~~~~~~~~~~~~v~~~  509 (590)
T 3kxw_A          490 AAFVIQEEHEYKLTVMCEVK  509 (590)
T ss_dssp             EEEEEEETTEEEEEEEEEES
T ss_pred             EEEEecCCCCceEEEEEEec
Confidence            8887543  35778888764

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.5e-64  Score=600.19  Aligned_cols=464  Identities=20%  Similarity=0.228  Sum_probs=382.4

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ..++.++|.++++++||++|+++.   +      +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|+++||++|.++.+++.++++++++++++++......+..     .+.....+.+++...                
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------  592 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR----------------  592 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence            99999999999999999999999999999999998765433211     111223333332110                


Q ss_pred             HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (620)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (620)
                        . ..  ..........++++||++|||||||.||||+++|+++.+.. .....+     +++.+|+++++.|++|..+
T Consensus       593 --~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~  661 (1304)
T 2vsq_A          593 --F-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF  661 (1304)
T ss_dssp             --G-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred             --c-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence              0 00  11122234578999999999999999999999999998763 333333     7789999999999999888


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (620)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (620)
                      ...++.++..|+++++.+.    ++..+.+.+.++++|+++++|++++.+.+....                        
T Consensus       662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------  717 (1304)
T 2vsq_A          662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------  717 (1304)
T ss_dssp             HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred             HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence            8778889999999999864    789999999999999999999999988642100                        


Q ss_pred             hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC---c
Q 007047          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  432 (620)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~  432 (620)
                                      .+        +++|.+++|||++++++.+.|.+.+ +.+++|.||+||++++++......   .
T Consensus       718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  773 (1304)
T 2vsq_A          718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS  773 (1304)
T ss_dssp             ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred             ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence                            01        2899999999999999999888776 478999999999998877654322   2


Q ss_pred             cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-------CCcccccceEEEcc
Q 007047          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP  505 (620)
Q Consensus       433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-------dgw~~TGDl~~~~~  505 (620)
                      ....++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.       ++||+|||+|++++
T Consensus       774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~  850 (1304)
T 2vsq_A          774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP  850 (1304)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred             CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence            2336899999999999999 6654  555678999999999999999999999999992       34999999999999


Q ss_pred             CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHH
Q 007047          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (620)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  582 (620)
                      ||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   +.++|+|+++..                 
T Consensus       851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~-----------------  912 (1304)
T 2vsq_A          851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ-----------------  912 (1304)
T ss_dssp             TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS-----------------
T ss_pred             CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC-----------------
Confidence            9999999999999998 7999999999999999999999999986543   589999997531                 


Q ss_pred             HhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       583 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                       ....++++++.+.++.++.|+.+.+++-.|.+
T Consensus       913 -~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t  944 (1304)
T 2vsq_A          913 -LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLT  944 (1304)
T ss_dssp             -SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCC
T ss_pred             -CCHHHHHHHHHHhChHhhhccEEEEecccCCC
Confidence             01236777777888888888877776655543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=6.3e-59  Score=501.29  Aligned_cols=401  Identities=16%  Similarity=0.198  Sum_probs=312.1

Q ss_pred             CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (620)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l  119 (620)
                      ..+++.++|.++++++||++|+++....++..+.++++||+||.++++++|++|++.|+ +||+|+|+++|++++++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35899999999999999999999871101233445789999999999999999999996 99999999999999999999


Q ss_pred             HHHhCCCEEEecCC---CCChhHHHHHHhhcCccEEEEcchhHHHhccccccccc-CccEEEEecCCcHHHHHHHhhcCC
Q 007047          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI  195 (620)
Q Consensus       120 A~~~~G~v~vpi~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~  195 (620)
                      ||+++|++++|+++   .++.+++.+++++++++++|++......+......... ....++.++...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   77899999999999999999998877655443321110 111222222110            


Q ss_pred             ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCC------CcEE
Q 007047          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY  269 (620)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~  269 (620)
                               . ............++++++|+|||||||.||||++||+++...+......+     .+..      +|++
T Consensus       169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~  233 (480)
T 3t5a_A          169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL  233 (480)
T ss_dssp             ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred             ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence                     0 00111223445789999999999999999999999999999888776655     4555      8999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007047          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (620)
Q Consensus       270 ~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (620)
                      ++++|++|.+++.. ++.+++.|+++++.+.     ++..+++.++++++| +..+|+++..++.....           
T Consensus       234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-----------  301 (480)
T 3t5a_A          234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-----------  301 (480)
T ss_dssp             EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred             EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence            99999999999764 6778999999999862     889999999999999 88999988877642110           


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC------CeeEeecCC
Q 007047          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL  417 (620)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~  417 (620)
                                            .......++        ++||.+++||+++++++.++|.+.++      ..+++.||+
T Consensus       302 ----------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          302 ----------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             ----------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             ----------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence                                  001111122        48999999999999999999998873      479999999


Q ss_pred             CCCCCceeeccCCC------------------------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC
Q 007047          418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (620)
Q Consensus       418 TE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~  473 (620)
                      ||++..++......                        .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+|+
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~  428 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD  428 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence            99998877655432                        123468999999 9999999 5432 4556778999999999


Q ss_pred             CcccccCCChhhhhccc------------cCCcccccceEEEccCCcEEEeec
Q 007047          474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  514 (620)
Q Consensus       474 ~v~~gy~~~~~~t~~~~------------~dgw~~TGDl~~~~~dG~l~~~GR  514 (620)
                      +++.|||++|+.|.++|            .+|||+|||+|+++ ||+|+|+||
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999999999998            36699999999996 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1.2e-45  Score=380.27  Aligned_cols=296  Identities=18%  Similarity=0.127  Sum_probs=241.3

Q ss_pred             CCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEec
Q 007047          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (620)
Q Consensus       219 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~  298 (620)
                      .+|+|+|+|||||||.||||++||+++.+.+......+     +++++|++++++|++|.+|+...+.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            46889999999999999999999999999998887777     8899999999999999999988888899999999886


Q ss_pred             CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHH
Q 007047          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (620)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  378 (620)
                      . ....++.++++++|++.++|+++..+++...                                      ...++    
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            4 2234677899999999999999998864211                                      01112    


Q ss_pred             HHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCC
Q 007047          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  458 (620)
Q Consensus       379 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~  458 (620)
                          +++|.+++||+++++++.+++++ +++++++.||+||++..++....+.... +++|.+.||+++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                38999999999999999999987 5999999999999998877766555444 7889999999887754       


Q ss_pred             CCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHH--
Q 007047          459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY--  536 (620)
Q Consensus       459 ~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l--  536 (620)
                            .|||+++|+..               .+|||+|||+|++|+|| ++++||+||+||+ +|++|+|.+||++|  
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence                  69999998633               37899999999999888 6677999999997 79999999999877  


Q ss_pred             -hcCcCcceEEEE-ecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCc
Q 007047          537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANW  611 (620)
Q Consensus       537 -~~~p~V~~~~V~-~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  611 (620)
                       .+||.|.+|+|+ +.+|+   +.++|+|+....+..                 ..++++++.++++.++.|+++.+++-
T Consensus       272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~-----------------~~~l~~~l~~~L~~~~~P~~i~~v~~  334 (358)
T 4gs5_A          272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEAL-----------------TERLTAEIRSRVSTYENPKHIYFAKA  334 (358)
T ss_dssp             HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHH-----------------HHHHHHHHHHHSCGGGSCSCEEEESS
T ss_pred             hccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcC-----------------HHHHHHHHHhhCCCCCCceEEEEECC
Confidence             478999999887 44433   478888887643211                 12566777777777777887777776


Q ss_pred             cccc
Q 007047          612 DTGC  615 (620)
Q Consensus       612 ~~~~  615 (620)
                      .|++
T Consensus       335 lP~t  338 (358)
T 4gs5_A          335 FAKT  338 (358)
T ss_dssp             CCBC
T ss_pred             cCCC
Confidence            6654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4.2e-43  Score=372.59  Aligned_cols=318  Identities=16%  Similarity=0.164  Sum_probs=247.2

Q ss_pred             CCCC-CCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHhhcCcE
Q 007047          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (620)
Q Consensus       216 ~~~~-~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~  293 (620)
                      ...+ +++++++|||||||.||+|++||+++...+......+.  ..++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3456 89999999999999999999999999877665533221  12678999999999987655544 56677999999


Q ss_pred             EEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q 007047          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (620)
Q Consensus       294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (620)
                      +++.+. ++..+++.++++++|+++++|+++..+++.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            998865 89999999999999999999999999876543221000                                   


Q ss_pred             hHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCc-eeeccCCCccccCccccCccCeeEEEee
Q 007047          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (620)
Q Consensus       373 ~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~~G~~~~~~~i~i~~  451 (620)
                      .+        +++|.+++||+++++++.+++++.||+++++.||+||+++. +......   . ...|.+.+++.++|+|
T Consensus       204 ~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d  271 (436)
T 3qov_A          204 RE--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID  271 (436)
T ss_dssp             TS--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred             cc--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence            01        38999999999999999999999999999999999999654 3332211   1 3356777899999999


Q ss_pred             cCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCC------c---EEEeecccCeEEcC
Q 007047          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS  522 (620)
Q Consensus       452 ~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG------~---l~~~GR~~d~i~~~  522 (620)
                      ++++  .+++.|+.|||+|+|.            +.+.|.++||+|||+|++++||      +   +++.||+||+||+ 
T Consensus       272 ~~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-  336 (436)
T 3qov_A          272 PETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-  336 (436)
T ss_dssp             TTTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred             CCCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence            3333  4566778999999983            3455678999999999999998      5   6999999999998 


Q ss_pred             CceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHH
Q 007047          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (620)
Q Consensus       523 ~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  599 (620)
                      +|++|+|.+||++|.+||+|.+++|++.++   .+.++|+|+++ +...+         .   .....++++.+.+.++.
T Consensus       337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~---------~---~~~~~~l~~~l~~~l~~  403 (436)
T 3qov_A          337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTD---------N---YIELEKIRRDIIRQLKD  403 (436)
T ss_dssp             TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCC---------C---HHHHHHHHHHHHHHHHH
T ss_pred             CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccccc---------c---hhhHHHHHHHHHHHHHH
Confidence            799999999999999999999999988654   36899999986 31000         0   00112667777777877


Q ss_pred             H-HHHCCCccCC
Q 007047          600 A-AERNKVIFAN  610 (620)
Q Consensus       600 ~-~~~~~~~~~~  610 (620)
                      + ..+..+.+++
T Consensus       404 ~~~~p~~i~~v~  415 (436)
T 3qov_A          404 EILVTPKVKLVK  415 (436)
T ss_dssp             HHSSCCEEEEEC
T ss_pred             hcCCceEEEEeC
Confidence            7 4555555555

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=5.6e-42  Score=364.04  Aligned_cols=334  Identities=17%  Similarity=0.156  Sum_probs=253.4

Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-  275 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-  275 (620)
                      ..+.+++....+   .......++++++++|||||||.||+|++||+++...+......+.  ..++.++|++++.+|+ 
T Consensus        70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~  144 (437)
T 2y27_A           70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYG  144 (437)
T ss_dssp             CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCS
T ss_pred             CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEccccc
Confidence            344555554331   1223456789999999999999999999999999877654433211  1267899999999998 


Q ss_pred             hHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       276 ~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      +|..++...+.++..|+++++.+. +++.+++.++++++|+++++|+++..+.+.........                 
T Consensus       145 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------  207 (437)
T 2y27_A          145 LFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------  207 (437)
T ss_dssp             SSHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred             ccccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence            677777777788999999988766 89999999999999999999999999876443211000                 


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCc-eeeccCCCcc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMC  433 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~  433 (620)
                                        .+        +++|.+++||+++++++.+++++.+|+++++.||+||+++. ++....... 
T Consensus       208 ------------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~-  260 (437)
T 2y27_A          208 ------------------VQ--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK-  260 (437)
T ss_dssp             ------------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC-
T ss_pred             ------------------cc--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC-
Confidence                              01        38999999999999999999998889999999999998543 333222111 


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc-CCcE---
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV---  509 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~-dG~l---  509 (620)
                        ...+.+.+++.++|+| +++ ..+++.|+.|||+|+|.            +.++|.++||+|||+|++++ ||++   
T Consensus       261 --~g~~~~~~~~~~~i~d-~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~  324 (437)
T 2y27_A          261 --DGPTIWEDHFYPEIID-PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRR  324 (437)
T ss_dssp             --SSCEECTTTEEEEEEC-TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCE
T ss_pred             --CceeEccCceEEEEEc-CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccc
Confidence              1255677899999999 443 24566788999999982            34556789999999999998 6986   


Q ss_pred             --EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047          510 --KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (620)
Q Consensus       510 --~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  584 (620)
                        ++.||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++   .+.++|+|+++++...          .   ..
T Consensus       325 i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~----------~---~~  390 (437)
T 2y27_A          325 MEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP----------D---TA  390 (437)
T ss_dssp             ECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT----------C---HH
T ss_pred             cCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc----------h---hh
Confidence              899999999997 799999999999999999999988877432   3689999998754210          0   00


Q ss_pred             ccHHHHHHHHHHHHHHH-HHCCCccC
Q 007047          585 SLVQLQNYILSELKNAA-ERNKVIFA  609 (620)
Q Consensus       585 ~~~~~~~~~~~~i~~~~-~~~~~~~~  609 (620)
                      ...++++++.+.++.+. .+..+.++
T Consensus       391 ~~~~l~~~l~~~l~~~~~~p~~v~~v  416 (437)
T 2y27_A          391 AIQVAKQALAYDIKSLIGVTAVINVL  416 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             hHHHHHHHHHHHHHHhcCCceEEEEe
Confidence            12367788888888875 45555555

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=8.9e-42  Score=363.16  Aligned_cols=334  Identities=16%  Similarity=0.130  Sum_probs=251.9

Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-  275 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-  275 (620)
                      ..+.+++....+   .......++++++++|||||||.||+|++||+++...+......+.  ..++.++|++++.+|+ 
T Consensus        72 ~~~~~~l~~~~p---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~  146 (443)
T 2y4o_A           72 FSTKNDLRDNYP---FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYG  146 (443)
T ss_dssp             CBCHHHHHTTTT---TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCS
T ss_pred             CCcHHHHHhhCC---CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCc
Confidence            345566654331   1223456789999999999999999999999999877655433211  1267899999999998 


Q ss_pred             hHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       276 ~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      +|..++...+.++..|+++++.+. +++.+++.++++++|+++++|+++..|.+.........                 
T Consensus       147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------  209 (443)
T 2y4o_A          147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP-----------------  209 (443)
T ss_dssp             SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred             ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence            577777667778899999988776 89999999999999999999999999876433211000                 


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCc-eeeccCCCcc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMC  433 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~  433 (620)
                                        .+        +++|.+++||+++++++.+++++.+|+++++.||+||+++. ++....... 
T Consensus       210 ------------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~-  262 (443)
T 2y4o_A          210 ------------------AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK-  262 (443)
T ss_dssp             ------------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC-
T ss_pred             ------------------cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC-
Confidence                              01        38999999999999999999998889999999999998543 333222111 


Q ss_pred             ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC-CcE---
Q 007047          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV---  509 (620)
Q Consensus       434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d-G~l---  509 (620)
                        ...+.+.+++.++|+| +++ ..+++.|+.|||+|+|.            +.+.|.++||+|||+|++++| |++   
T Consensus       263 --~g~~~~~~~~~~~i~d-~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~  326 (443)
T 2y4o_A          263 --DGPVIWEDHFYPEIID-PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRR  326 (443)
T ss_dssp             --CSEEECTTTEEEEEEC-TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCE
T ss_pred             --CceEEccCCeEEEEEc-CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccc
Confidence              1245567899999999 442 24566778999999982            344567899999999999999 987   


Q ss_pred             --EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEcCh--HHHHHHHHHCCCCCCHHH
Q 007047          510 --KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLE  582 (620)
Q Consensus       510 --~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~  582 (620)
                        ++.||.||+||+ +|++|+|.+||++|.+||+|.+++|++.++   .+.++|+|++++  +...          .   
T Consensus       327 l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~----------~---  392 (443)
T 2y4o_A          327 LAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV----------T---  392 (443)
T ss_dssp             ECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTC----------C---
T ss_pred             cCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccc----------h---
Confidence              899999999997 799999999999999999999998887432   358899999875  2100          0   


Q ss_pred             HhccHHHHHHHHHHHHHHH-HHCCCccC
Q 007047          583 LCSLVQLQNYILSELKNAA-ERNKVIFA  609 (620)
Q Consensus       583 ~~~~~~~~~~~~~~i~~~~-~~~~~~~~  609 (620)
                      .....++++++.+.++.+. .+..+.++
T Consensus       393 ~~~~~~l~~~l~~~l~~~~~~p~~v~~v  420 (443)
T 2y4o_A          393 DGERAALARELQHRIKTMVGVSSGVTVL  420 (443)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHhCCceEEEEe
Confidence            0011267777888887764 45555555

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=4.5e-29  Score=258.55  Aligned_cols=239  Identities=18%  Similarity=0.157  Sum_probs=171.6

Q ss_pred             CCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEEE
Q 007047          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (620)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~l~~G~~~v  295 (620)
                      ..++++++++|||||||.||+|+++|+++...+......+.  ..++..+|++++.+|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            47889999999999999999999999999998875433221  1267889999999999 99999887777788999443


Q ss_pred             EecCChH-----------------------HHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047          296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (620)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (620)
                      ....++.                       .+++.++++++|++.++|+++..|++....                    
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------  225 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------  225 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence            3333666                       777899999999999999999998754211                    


Q ss_pred             HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHH-Hhc-CCeeEeecCCCCCCCceeeccCC
Q 007047          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD  430 (620)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~  430 (620)
                                       ...+++        ++|.+++||+++++++.++++ +.| ++++++.||+||+++++..+.. 
T Consensus       226 -----------------~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          226 -----------------VLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             -----------------HHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             -----------------hccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                             111122        899999999999999999999 888 8999999999999876644321 


Q ss_pred             CccccCccccC------ccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEc
Q 007047          431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL  504 (620)
Q Consensus       431 ~~~~~~~~G~~------~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~  504 (620)
                           .++|.+      +|+++++|+|.+++  .+++.|+.|||+|++...            +.+ --+|+|||++...
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g--~~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~  339 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVDSITA--QTVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIRL  339 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEECTTTC--SBCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEECCCCC--cCCCCCCceEEEEEEcCc------------ccc-cccccCCceEEEe
Confidence                 247888      99999999992244  466678999999997321            111 1137788887764


Q ss_pred             cC--C-------cEEEeecccCeEEcCCc
Q 007047          505 PN--G-------VVKIIDRKKNLIKISQG  524 (620)
Q Consensus       505 ~d--G-------~l~~~GR~~d~i~~~~G  524 (620)
                      +.  |       .+..++|.++..++ .|
T Consensus       340 ~~~~g~~~d~~~~v~~~~~~~~~~~i-~g  367 (369)
T 3hgu_A          340 PGVSGFAGDRLADIEPLKISEGRKVI-EG  367 (369)
T ss_dssp             CCSTTCSSCEEEEEEECC-----------
T ss_pred             cCCCCCcCcccccceeccccCCCcee-ee
Confidence            33  2       25567777777776 35

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.87  E-value=4.9e-08  Score=103.79  Aligned_cols=132  Identities=18%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             EEEEEeecCCCCHHHHHHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCcccc-CccC-eeEEEeecCCCC-C--
Q 007047          385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEMG-Y--  457 (620)
Q Consensus       385 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~~~~~~~-~--  457 (620)
                      +..++.||-   ..-...++..+ +.+++ ..|++||+-  ......... .+...+. .+|+ +-++.++.++.. +  
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~-~~~~~~~~L~~~~~ffEFip~~~~~~~~~  375 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLC-KPEDVSYTFMPNMSYFEFIPMDGGDKNDV  375 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTS-CGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCC-CcccCceeecCCcEEEEEEeccccCCCcE
Confidence            666677773   22233444433 67777 999999963  222221111 1022222 2233 334566533221 1  


Q ss_pred             ---CCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc----CCcEEEeecccCeEEcCCceeeccH
Q 007047          458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE  530 (620)
Q Consensus       458 ---~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~----dG~l~~~GR~~d~i~~~~G~~v~p~  530 (620)
                         ..+..|+.+||+|++..   |.|+             |++||+.+++.    ..++.|.||.+|+|++ .|+++++.
T Consensus       376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~  438 (581)
T 4eql_A          376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE  438 (581)
T ss_dssp             EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred             eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence               11236788999998753   4332             89999999975    3579999999999997 79999999


Q ss_pred             HHHHHHhcC
Q 007047          531 YLENVYCVA  539 (620)
Q Consensus       531 ~iE~~l~~~  539 (620)
                      +||+++.+.
T Consensus       439 ~v~~al~~a  447 (581)
T 4eql_A          439 DLFKAVSQA  447 (581)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999999743

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.82  E-value=6.9e-08  Score=102.81  Aligned_cols=130  Identities=14%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             EEEEEeecCCCCHHHHHHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCcccc-CccC-eeEEEeecCCC-----
Q 007047          385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEM-----  455 (620)
Q Consensus       385 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~~~~~~-----  455 (620)
                      +..++.||-   ..-...++..+ +.+++ ..|++||+- +.....+..  .++..+. .+|+ .-++.++.++.     
T Consensus       307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~~~~~~  380 (609)
T 4b2g_A          307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHSSIPLS  380 (609)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred             EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCC--CcccCceeecCCcEEEEEEeccccccccc
Confidence            556666663   22224444433 57777 999999963 222221111  1112221 2233 33455653332     


Q ss_pred             -CC-------CCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc----CCcEEEeecccCeEEcCC
Q 007047          456 -GY-------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ  523 (620)
Q Consensus       456 -~~-------~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~----dG~l~~~GR~~d~i~~~~  523 (620)
                       ..       ..+..|+.+||+|+..   .|.|+             |++||+++++.    ...+.|.||.+|+|++ .
T Consensus       381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~  443 (609)
T 4b2g_A          381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D  443 (609)
T ss_dssp             SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence             11       1234678899999764   35553             89999999973    4689999999999997 7


Q ss_pred             ceeeccHHHHHHHh
Q 007047          524 GEYVALEYLENVYC  537 (620)
Q Consensus       524 G~~v~p~~iE~~l~  537 (620)
                      |+++++.+||+++.
T Consensus       444 Geki~~~~v~~av~  457 (609)
T 4b2g_A          444 SDKTDEAELQKAVD  457 (609)
T ss_dssp             SCCBCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHH
Confidence            99999999999996

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.60  E-value=1.4e-07  Score=100.12  Aligned_cols=130  Identities=21%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             HHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCcccc-CccC-eeEEEeecCCCCC--------CCCCCCCCceE
Q 007047          401 EFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEMGY--------SPLDDPPCGEV  468 (620)
Q Consensus       401 ~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~~~~~~~~--------~~~~~g~~Gei  468 (620)
                      ..++..+ +.+++ ..|++||+- +.....+..  .++..+. .+|+ .-++.++.++...        ..+..|+.+||
T Consensus       320 ~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~Yel  396 (581)
T 4epl_A          320 PKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRL--SPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEV  396 (581)
T ss_dssp             HHHHHHHTTSCEEECCEEETTEE-EEECCCTTS--CTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEE
T ss_pred             HHHHHHcCCCccccCceecccee-eeeecCCCC--CccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEE
Confidence            3444444 57777 999999963 222221111  1122222 2333 2344454222111        12345788999


Q ss_pred             EEecCCcccccCCChhhhhccccCCcccccceEEEccC----CcEEEeecccCeEEcCCceeeccHHHHHHHhc------
Q 007047          469 CVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKISQGEYVALEYLENVYCV------  538 (620)
Q Consensus       469 ~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d----G~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~------  538 (620)
                      +|++..   |.|+             |++||+.+++.-    ..+.|.||.++++++ .|+++++.+||+++.+      
T Consensus       397 viTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~al~~a~~~l~  459 (581)
T 4epl_A          397 VITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NIDKNTERDLQLSVESAAKRLS  459 (581)
T ss_dssp             EEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHHHHHHHHHHH
T ss_pred             EEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-eeeECCHHHHHHHHHHHHHhhc
Confidence            998753   4332             899999999642    579999999999998 6999999999999964      


Q ss_pred             Cc--CcceEEEEec
Q 007047          539 AP--IIEDIWVYGD  550 (620)
Q Consensus       539 ~p--~V~~~~V~~~  550 (620)
                      ..  .|.|-.++.+
T Consensus       460 ~~~~~l~eft~~~d  473 (581)
T 4epl_A          460 EEKIEVIDFSSYID  473 (581)
T ss_dssp             TTTCCEEEEEEEEE
T ss_pred             ccCCeEEEEEEecC
Confidence            22  3555555553

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.54  E-value=7.1e-08  Score=79.89  Aligned_cols=51  Identities=8%  Similarity=0.059  Sum_probs=43.3

Q ss_pred             ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      .|.|||||+ +|.||+|.+||++|.+||+|.+++|++.+++   +.+.++|+..+
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~   54 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQ   54 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECT
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEee
Confidence            489999998 7999999999999999999999998875543   47778887653

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.34  E-value=1.5  Score=45.16  Aligned_cols=125  Identities=14%  Similarity=0.066  Sum_probs=89.9

Q ss_pred             CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HhHHHHHHHHHhCCCEEEe
Q 007047           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (620)
Q Consensus        55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp  130 (620)
                      .++.++.+...  -|.+|..  ..+|.+.+...+..++..+...|+.++|++...++.+  ...+...++++..|+.+++
T Consensus        88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34666665541  3445543  4679999988888888888888999999999988853  3445567888999999987


Q ss_pred             cCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-----cccCccEEEEecCC
Q 007047          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (620)
Q Consensus       131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~  182 (620)
                      ++.. +.+.+...+++.++.+++..+.....+......     ....++.+++.+..
T Consensus       166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  221 (437)
T 2y27_A          166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP  221 (437)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence            7654 778888999999999999998877665443221     12466677666543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=90.92  E-value=2.6  Score=43.28  Aligned_cols=125  Identities=14%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HhHHHHHHHHHhCCCEEEe
Q 007047           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (620)
Q Consensus        55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp  130 (620)
                      .++.++.+...  -|.+|..  ..+|.+.+...+..++..+...|+.++|++...++.+  ...+...++++..|+.+++
T Consensus        90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            34566655441  3555543  4679999988888888888888999999999988863  3445567888999999888


Q ss_pred             cCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-----cccCccEEEEecCC
Q 007047          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (620)
Q Consensus       131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~  182 (620)
                      ++.. +.+.+...+++.++.+++..+.....+......     ....++.++..+..
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  223 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP  223 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence            7654 778888999999999999988876655443211     12466777666543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=90.54  E-value=1.5  Score=44.99  Aligned_cols=123  Identities=8%  Similarity=-0.046  Sum_probs=90.0

Q ss_pred             CCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HhHHHHHHHHHhCCCEEEecC
Q 007047           57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY  132 (620)
Q Consensus        57 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpi~  132 (620)
                      +.+|++...  -|.+|..  ..+|.+.+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            556666551  3444443  4689999998888888888888999999999888743  444557788899999988876


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-----cccCccEEEEecCC
Q 007047          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (620)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~  182 (620)
                      .. ..+.+...+++.++.+++..+.....+......     ....++.++..+..
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  217 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP  217 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence            54 678888899999999999998877665443221     13467777766544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=83.86  E-value=13  Score=38.68  Aligned_cols=121  Identities=8%  Similarity=0.029  Sum_probs=85.5

Q ss_pred             CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEec
Q 007047           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL  131 (620)
Q Consensus        55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi  131 (620)
                      .|+.+|++...  -|.+|..  ..+|.+.+...+.....   ..++.++|++...+|-.-.+ +..+++++..|+..+..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46788877662  3444433  56788888776665443   45889999998888875433 34467888899998877


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecC
Q 007047          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS  181 (620)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~  181 (620)
                      + ..+.+.+...+++.++.+++..+.....+..........++.++..+.
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~  284 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA  284 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence            5 467888999999999999999998877665544333335666665544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=83.76  E-value=5.5  Score=39.67  Aligned_cols=123  Identities=15%  Similarity=0.063  Sum_probs=79.9

Q ss_pred             CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--hHHHHHHHHHhCCCEEEe
Q 007047           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP  130 (620)
Q Consensus        55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vp  130 (620)
                      .++.++.+...  -|.+|..  ..+|.+.+...+..++..+...|+.++|++..+++-+.  --+...++++..|+.+++
T Consensus        89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            35666666552  3555544  45688888888777767777789999999999988632  234455566889996655


Q ss_pred             cCCCCChh-----------------------HHHHHHhhcCccEEEEcchhHHHhccccc---ccccCccEEEEecC
Q 007047          131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS  181 (620)
Q Consensus       131 i~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~  181 (620)
                      .+  .++.                       .+...+++.++.+++..+.....+.+...   .....++.++..+.
T Consensus       167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe  241 (369)
T 3hgu_A          167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGT  241 (369)
T ss_dssp             CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESS
T ss_pred             cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCc
Confidence            43  2333                       66668899999999999888776654421   12244566665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	620
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-68
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-62
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-56
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-42
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-40
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	6e-34

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  231 bits (589), Expect = 7e-68
 Identities = 89/554 (16%), Positives = 174/554 (31%), Gaps = 77/554 (13%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
                                       A M  G K  E +  +               L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376

Query: 386 RLVISGGAPLSTEV-EEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
           R++ S G P++ E  E + +        +V  +  TET G      P  + +  G+A   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
               +  L  V   G  P +    G + +           + + +   ++        + 
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLK 553
           +GD  +   +G   I  R  +++ +S G  +    +E+     P I +  V G       
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 552

Query: 554 SMLVAVVVPCEEDT 567
             + A V     + 
Sbjct: 553 QAIYAYVTLNHGEE 566

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  213 bits (542), Expect = 3e-62
 Identities = 126/553 (22%), Positives = 194/553 (35%), Gaps = 90/553 (16%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                     L  + +        LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291

Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
           + GG+     +           + QGYGLTET       F           +++ +    
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
           G       LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKS 554
           GDI      G V+I DR K+LIK   GE+++   LEN     P +++  V        + 
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 468

Query: 555 MLVAVVVPCEEDT 567
             +AVVVP  E  
Sbjct: 469 RPLAVVVPRGEKP 481

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  199 bits (506), Expect = 3e-56
 Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 84/559 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                           R L+R     +  + L                            
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361

Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
              LR + S G P++ EV E+           +V  Y  TE+           +  +  G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII--- 491
           +A       +  + + P  G         G + V+    +     +KN D   ++ +   
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
            G++ TGD      +G + I+ R  +++ +S G  ++   +E      PI+ +  V G  
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFN 537

Query: 550 -DSLKSMLVAVVVPCEEDT 567
            D     + A VV   + +
Sbjct: 538 DDLTGQAVAAFVVLKNKSS 556

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  176 bits (446), Expect = 1e-48
 Identities = 120/535 (22%), Positives = 195/535 (36%), Gaps = 73/535 (13%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F              
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                       K  L                               L  + SGGAPLS 
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318

Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E  E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++    
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
              ++    GE+CVRG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR 
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
           K+LIK   G  VA   LE++    P I D  V G   D    +  AVVV     T
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT 489

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  156 bits (395), Expect = 6e-42
 Identities = 91/530 (17%), Positives = 153/530 (28%), Gaps = 78/530 (14%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  + + ++  +       +A   A   A   +K      LR V   GA +   V 
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
           E +        V  YG TE      +  P     +       V     +     +     
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +      +     + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++I 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
              GE +    +E V   AP + ++ V G         + A VVP   +T
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  152 bits (384), Expect = 2e-40
 Identities = 85/535 (15%), Positives = 166/535 (31%), Gaps = 101/535 (18%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+                                        ++      
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247

Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
           +    + + ++  + +            +L+ +            +I+ G+  S  +   
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296

Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
            +       +  YG TET    T     +  +  +    +     ++  V E        
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353

Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +       +  + TGD  + L +G ++ + R 
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
            N +KI  G  V LE +E++      I +  V        +  L A  V  +   
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  133 bits (336), Expect = 6e-34
 Identities = 90/533 (16%), Positives = 165/533 (30%), Gaps = 81/533 (15%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
               F  + + K+    +             +     +      L+++  GGA  S E  
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
             ++      L Q +G+ E     T     E  +V T G P+S Y E R+    +     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372

Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
           +     G +  RG     GYYK  +    S  + G++ TGDI ++  +G + +  R K+ 
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432

Query: 519 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDTK 568
           I    GE VA E +EN     P + D  +       L       ++P +E  K
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	620
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1e-69  Score=600.44  Aligned_cols=463  Identities=17%  Similarity=0.204  Sum_probs=373.8

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      +--..+|+++++.+||++|+++.   .+..+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus        72 N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~  148 (643)
T d1pg4a_          72 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC  148 (643)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence            34456778889999999999987   444566689999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHH---------hcccc-cccccCccEEEEecCCcHHHHHHHh
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPD-CRSAQRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~-~~~~~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      +++|++++|+++.++.+++.+++++++++++|+++.....         ..... ......+..++++.......    .
T Consensus       149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----~  224 (643)
T d1pg4a_         149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----D  224 (643)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----C
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----c
Confidence            9999999999999999999999999999999997653211         11111 11234566777765442210    0


Q ss_pred             hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCcEEE
Q 007047          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~~  270 (620)
                      ........+.+..... ..........++|+++|+|||||||.||||++||.+++..... ....+     ++.++|+++
T Consensus       225 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~  298 (643)
T d1pg4a_         225 WQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW  298 (643)
T ss_dssp             CCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred             cccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEEE
Confidence            0011223344444333 2233345567899999999999999999999999997765544 33344     788999999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007047          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (620)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (620)
                      +.+|++|.+++.. ++.+|+.|++++++++     ++..+++.++++++|+++++|+++..+++....            
T Consensus       299 ~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~------------  366 (643)
T d1pg4a_         299 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------  366 (643)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred             EeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch------------
Confidence            9999999999875 5567999999999763     688999999999999999999999988642111            


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCCCCC
Q 007047          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC  421 (620)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~  421 (620)
                                             ..+..++        ++||.+++||+++++++.+++.+.++   +++++.||+||++
T Consensus       367 -----------------------~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g  415 (643)
T d1pg4a_         367 -----------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG  415 (643)
T ss_dssp             -----------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred             -----------------------hccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhcc
Confidence                                   1111222        38999999999999999999998884   7799999999999


Q ss_pred             CceeeccCC-CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---cCCcc
Q 007047          422 GPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF  495 (620)
Q Consensus       422 ~~~~~~~~~-~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~dgw~  495 (620)
                      +.++...+. ...+.+++|+|++|++++|+| +++.  +++.|+.|||+|+|  |+++.|||++++.+.+++   .+|||
T Consensus       416 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~--~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~  492 (643)
T d1pg4a_         416 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  492 (643)
T ss_dssp             SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             ceEEecCCCccCCCCCccccccCCCEEEEEC-CCCC--CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence            876655443 244568999999999999999 6665  44566899999999  568899999999888775   58999


Q ss_pred             cccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (620)
Q Consensus       496 ~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~  564 (620)
                      +|||+|++|+||+|+++||+||+||+ +|++|+|.|||++|.+||+|.||+|++.+++   +.++|+|++++
T Consensus       493 ~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~  563 (643)
T d1pg4a_         493 FSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH  563 (643)
T ss_dssp             EEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred             EcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECC
Confidence            99999999999999999999999997 7999999999999999999999999997653   58999999864

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-68  Score=590.83  Aligned_cols=513  Identities=17%  Similarity=0.191  Sum_probs=393.8

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      +...++|+++|+++||++|+++.   +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++||
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA  135 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA  135 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            45688999999999999999987   445566689999999999999999997 67999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH--------HhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (620)
                      |+++|++++|+++.++.+++.++++++++++++++.....        ............+.............   ...
T Consensus       136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  212 (640)
T d1ry2a_         136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAF  212 (640)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCC
T ss_pred             hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc---ccc
Confidence            9999999999999999999999999999999999875321        11111112223333333332221100   000


Q ss_pred             cCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 007047          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (620)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (620)
                      .......+....... .......+..++|+++|+|||||||.||||+++|.+++..........    ..+..+|++++.
T Consensus       213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~----~~~~~~d~~l~~  287 (640)
T d1ry2a_         213 HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTA  287 (640)
T ss_dssp             CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH----SCCCSSCEEEEC
T ss_pred             ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh----cCCCcccceeec
Confidence            001112222222211 223334456789999999999999999999999999888765543322    268899999999


Q ss_pred             cChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (620)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (620)
                      +|++|.++... ++.++..|+++++.+.     ++..+++.++++++|+++++|++++.|.+...               
T Consensus       288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------  352 (640)
T d1ry2a_         288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD---------------  352 (640)
T ss_dssp             SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred             cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc---------------
Confidence            99999999764 5668999999888764     68899999999999999999999988753110               


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCCCCCCc
Q 007047          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGP  423 (620)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~  423 (620)
                                          ...+..++        ++||.+++||+++++++.+++.+.+|   ..+++.||+||++..
T Consensus       353 --------------------~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~  404 (640)
T d1ry2a_         353 --------------------SYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH  404 (640)
T ss_dssp             --------------------TSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred             --------------------cccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence                                01111222        38999999999999999999999885   569999999999987


Q ss_pred             eeeccCCC--ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---cCCccc
Q 007047          424 TTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH  496 (620)
Q Consensus       424 ~~~~~~~~--~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~dgw~~  496 (620)
                      +.......  ...++++|.|+||++++|+| ++++..+.+.+..|||+++|  |+++.|||++++.+.++|   .+|||+
T Consensus       405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~  483 (640)
T d1ry2a_         405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF  483 (640)
T ss_dssp             SEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEE
T ss_pred             cccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEE
Confidence            76654433  34568999999999999999 77766666666789999998  689999999999999887   459999


Q ss_pred             ccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHH
Q 007047          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (620)
Q Consensus       497 TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~  573 (620)
                      |||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++   +.++|+|+++++....-...
T Consensus       484 TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~  562 (640)
T d1ry2a_         484 TGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATD  562 (640)
T ss_dssp             EEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------
T ss_pred             cCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccch
Confidence            9999999999999999999999996 7999999999999999999999999997764   58999999876432221111


Q ss_pred             CCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccccc
Q 007047          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCF  616 (620)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  616 (620)
                      .... .+     ..++.++++++++.++.|+.+.+++-.|++-
T Consensus       563 ~~~~-~l-----~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~  599 (640)
T d1ry2a_         563 DELQ-DI-----KKHLVFTVRKDIGPFAAPKLIILVDDLPKTR  599 (640)
T ss_dssp             --CC-SH-----HHHHHHHHHHHTCTTTSCSEEEECSCCCBCT
T ss_pred             HHHH-HH-----HHHHHHHHHhhCCCCCCceEEEEeCCCCCCC
Confidence            1110 01     1256667777777777788887777666553

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.7e-67  Score=571.97  Aligned_cols=459  Identities=26%  Similarity=0.339  Sum_probs=369.5

Q ss_pred             CCCCC-CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 007047           34 FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (620)
Q Consensus        34 ~~~~~-~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~  112 (620)
                      ||+.- +...||.++|+++|+++||++|+++.     .+++++++||+||.++++++|++|.+.|+++||+|+|+++|++
T Consensus         2 ~p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~-----~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~   76 (534)
T d1v25a_           2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRL-----HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF   76 (534)
T ss_dssp             CBCCBCCCCCCTHHHHHHHHHHSTTCEEEEEC-----TTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred             CCCccCCCCCCHHHHHHHHHHHcCCCeEEEEe-----cCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCH
Confidence            44333 34458999999999999999999876     3456688999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (620)
Q Consensus       113 e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (620)
                      ++++++|||+++|++++|+++.++.+++.++|+.++++.++++........... .....+...+........       
T Consensus        77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------  148 (534)
T d1v25a_          77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE-------  148 (534)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT-------
T ss_pred             HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc-------
Confidence            999999999999999999999999999999999999999999988776654333 333455555555433211       


Q ss_pred             cCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 007047          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (620)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (620)
                         ........ .   ..........++++++++|||||||.||||+++|.+++..........   .......|++++.
T Consensus       149 ---~~~~~~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~  218 (534)
T d1v25a_         149 ---GYLAYEEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPV  218 (534)
T ss_dssp             ---TCEEHHHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEEC
T ss_pred             ---cccccccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccc
Confidence               01111111 0   112233456789999999999999999999999999987654432221   2266789999999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007047          273 LPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (620)
Q Consensus       273 ~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (620)
                      +|++|.+++...+..+..|+++++...  ++..+...+.++++|.+.++|.++..+.........               
T Consensus       219 ~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~---------------  283 (534)
T d1v25a_         219 VPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH---------------  283 (534)
T ss_dssp             SCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC---------------
T ss_pred             cchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc---------------
Confidence            999999998888888778887777654  899999999999999999999999988764332211               


Q ss_pred             HHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC
Q 007047          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (620)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  430 (620)
                                                    ..++||.+++||+++++++.+++++ ++.++++.||+||++..++.....
T Consensus       284 ------------------------------~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~  332 (534)
T d1v25a_         284 ------------------------------RLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVK  332 (534)
T ss_dssp             ------------------------------CCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCC
T ss_pred             ------------------------------cccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccC
Confidence                                          1148999999999999999999987 589999999999999988766433


Q ss_pred             Cc----------cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccc
Q 007047          431 EM----------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  499 (620)
Q Consensus       431 ~~----------~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGD  499 (620)
                      ..          ...+++|.|+||++++|+| +++...+.+.++.|||+|+|++++.||+++++.|...| .||||+|||
T Consensus       333 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGD  411 (534)
T d1v25a_         333 SHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD  411 (534)
T ss_dssp             GGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEE
T ss_pred             ccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCc
Confidence            21          2347899999999999999 88888888888999999999999999999999999998 899999999


Q ss_pred             eEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       500 l~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      +|++++||.|++.||+||+||+ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++
T Consensus       412 lg~~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~  477 (534)
T d1v25a_         412 IAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR  477 (534)
T ss_dssp             EEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred             eeEECCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeC
Confidence            9999999999999999999997 7999999999999999999999999986653   4788998875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.2e-65  Score=559.78  Aligned_cols=474  Identities=26%  Similarity=0.306  Sum_probs=372.5

Q ss_pred             CCCCCCcccHHHHHHHHHHhC---CCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc
Q 007047           35 PSVDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (620)
Q Consensus        35 ~~~~~~~~ti~~~l~~~a~~~---pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~  111 (620)
                      |-.|....|+.++|.+++++|   |+.+|+++.   +.    .+++||+||.+++.++|++|+++|+++||+|+|+++|+
T Consensus        10 p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~----~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns   82 (541)
T d1lcia_          10 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HI----EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS   82 (541)
T ss_dssp             CSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CC----CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCC
Confidence            344455679999999999998   455555432   21    15799999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHh
Q 007047          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (620)
Q Consensus       112 ~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (620)
                      +++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+.+.. ...+..+.+++++....       
T Consensus        83 ~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  154 (541)
T d1lcia_          83 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD-------  154 (541)
T ss_dssp             SSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred             HHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc-------
Confidence            9999999999999999999999999999999999999999999998877665544 34466677777654332       


Q ss_pred             hcCCceeeHHHHHhcCcc------CcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCC
Q 007047          192 QTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV  265 (620)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~  265 (620)
                        ......+.+.......      ...+.....++++++++|||||||.||+|++||++++.........+.  ......
T Consensus       155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~~~  230 (541)
T d1lcia_         155 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIP  230 (541)
T ss_dssp             --BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCT
T ss_pred             --ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--cccccc
Confidence              1122333333222111      122234456789999999999999999999999999887665544331  125678


Q ss_pred             CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007047          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (620)
Q Consensus       266 ~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (620)
                      ++++++++|++|..+....+.++..++..+.... +.......+..+++|.+..+|.++..+.+....            
T Consensus       231 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~------------  298 (541)
T d1lcia_         231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI------------  298 (541)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG------------
T ss_pred             cccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc------------
Confidence            9999999999999998887777777888777665 889999999999999999999999887642111            


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC-CeeEeecCCCCCCCc
Q 007047          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGP  423 (620)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~  423 (620)
                                               ...++        ++++.+++||+++++...+++.+.++ ..++++||+||+++.
T Consensus       299 -------------------------~~~~~--------~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  345 (541)
T d1lcia_         299 -------------------------DKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA  345 (541)
T ss_dssp             -------------------------GGSCC--------TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSC
T ss_pred             -------------------------ccccc--------ccceEEEecccccccccccccccccCCceeeecCCccccCce
Confidence                                     11111        38999999999999999999988886 568999999999998


Q ss_pred             eeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEE
Q 007047          424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  502 (620)
Q Consensus       424 ~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~  502 (620)
                      ++....... ..+++|+|+||++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+...+ .+|||+|||+|+
T Consensus       346 ~~~~~~~~~-~~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~  422 (541)
T d1lcia_         346 ILITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  422 (541)
T ss_dssp             SEECCCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEE
T ss_pred             EEecCcccC-CCCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeE
Confidence            887665543 348999999999999999 4433 456677899999999999999999999998888 689999999999


Q ss_pred             EccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC------hHHHHHHHHH
Q 007047          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC------EEDTKKWAYS  573 (620)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~------~~~~~~~~~~  573 (620)
                      +++||++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++      .+++.+++++
T Consensus       423 ~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~  501 (541)
T d1lcia_         423 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS  501 (541)
T ss_dssp             ECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             EcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999997 7999999999999999999999999986543   4888999874      3566667666


Q ss_pred             CCC
Q 007047          574 NGH  576 (620)
Q Consensus       574 ~~~  576 (620)
                      +..
T Consensus       502 ~l~  504 (541)
T d1lcia_         502 QVT  504 (541)
T ss_dssp             HSC
T ss_pred             hCC
Confidence            543

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=6.7e-63  Score=534.58  Aligned_cols=464  Identities=20%  Similarity=0.226  Sum_probs=379.2

Q ss_pred             CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (620)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~  116 (620)
                      .-++..||.++|+++|+++||++|+++.   +      +++||+||.++++++|.+|++.|+++||+|+++++|++++++
T Consensus        18 ~~~~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~   88 (514)
T d1amua_          18 EYPRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFI   88 (514)
T ss_dssp             CCCTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHH
Confidence            3346789999999999999999999975   3      589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (620)
Q Consensus       117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (620)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++......+.......     ........              
T Consensus        89 ~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~--------------  149 (514)
T d1amua_          89 GILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEED--------------  149 (514)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCS--------------
T ss_pred             HHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccc--------------
Confidence            99999999999999999999999999999999999999988776554332211     11111110              


Q ss_pred             eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                             ............+..++++++++|||||||.||+|++||.++...+......+     .....+++++.+|++
T Consensus       150 -------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  217 (514)
T d1amua_         150 -------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASIS  217 (514)
T ss_dssp             -------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTT
T ss_pred             -------cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccc
Confidence                   01111222333456789999999999999999999999999999998887776     889999999999999


Q ss_pred             HHHHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047          277 HILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (620)
Q Consensus       277 h~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (620)
                      |..++...+.++..|+++++...    +.......+..+.++.+..+|........                        
T Consensus       218 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  273 (514)
T d1amua_         218 FDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------  273 (514)
T ss_dssp             STHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc------------------------
Confidence            99999888888999999888753    66778889999999999999876543210                        


Q ss_pred             HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-
Q 007047          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-  431 (620)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-  431 (620)
                                         .++        .+++.+++||+++++++.+++.+  +..+++.||+||++.+++...... 
T Consensus       274 -------------------~~~--------~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~  324 (514)
T d1amua_         274 -------------------ERI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKE  324 (514)
T ss_dssp             -------------------TTC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSS
T ss_pred             -------------------ccc--------ccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccccc
Confidence                               011        48999999999999999887765  678999999999999877665443 


Q ss_pred             -ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-------CCcccccceEEE
Q 007047          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQI  503 (620)
Q Consensus       432 -~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-------dgw~~TGDl~~~  503 (620)
                       .....+.|.+.++..+.+.| +++..  ++.|+.|||+|+||.++.||+++++.+.+.|.       ||||+|||+|++
T Consensus       325 ~~~~~~~~~~~~~~~~v~~~d-~~~~~--~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~  401 (514)
T d1amua_         325 TIGHSVPIGAPIQNTQIYIVD-ENLQL--KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW  401 (514)
T ss_dssp             CCCSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEE
T ss_pred             ccCcccccccceeeeeEeeec-cccee--cCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEE
Confidence             22336778889999999998 65554  44568999999999999999999999988872       689999999999


Q ss_pred             ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCH
Q 007047          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (620)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~  580 (620)
                      |+||+|+++||++|+|++ +|++|+|.+||++|.+||+|.||+|++.++.   +.++|+|+++++.-             
T Consensus       402 d~~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~-------------  467 (514)
T d1amua_         402 LSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-------------  467 (514)
T ss_dssp             CTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC-------------
T ss_pred             CCCCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCC-------------
Confidence            999999999999999997 7999999999999999999999999997654   48999999865410             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047          581 LELCSLVQLQNYILSELKNAAERNKVIFANWDTGC  615 (620)
Q Consensus       581 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  615 (620)
                           ..++++++.++++.+..|..+.+++-.|++
T Consensus       468 -----~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t  497 (514)
T d1amua_         468 -----LEQLRQFSSEELPTYMIPSYFIQLDKMPLT  497 (514)
T ss_dssp             -----HHHHHHHHHHHSCGGGSCSEEEECSSCCBC
T ss_pred             -----HHHHHHHHHhhCCcccCceEEEEeCCCCCC
Confidence                 125667777778888888888887776654

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.3e-61  Score=525.10  Aligned_cols=455  Identities=18%  Similarity=0.172  Sum_probs=368.1

Q ss_pred             ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (620)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~  121 (620)
                      .||.++|.++|+++||++|+++.   +      +++||+||+++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999875   3      57999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHh----cccccccccCccEEEEecCCcHHHHHHHhhcCCce
Q 007047          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL----LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (620)
Q Consensus       122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~----~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (620)
                      +++|++++|+++.++.+++.++++.++++++++++......    ..........+...+......            ..
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence            99999999999999999999999999999999976432211    000111112222222222111            11


Q ss_pred             eeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 007047          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (620)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (620)
                      .+++++.    ..+....+..++|+++++|||||||.||||++||.++...+......+     .+.++|++++..|++|
T Consensus       164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            2222211    122334456899999999999999999999999999999999887777     8899999999999999


Q ss_pred             HHHHHH-HH-HHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          278 ILDRVI-EE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       278 ~~g~~~-~~-~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      .+++.. .+ ..+..|.+++..+. ++..+...+++++++.+..+|..+..+.........                   
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  295 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD-------------------  295 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC-------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc-------------------
Confidence            999864 33 34555677776654 899999999999999999999998887653222110                   


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (620)
                                                ..++++.+++||+++++...+++.+.++......||.+|.+.............
T Consensus       296 --------------------------~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         296 --------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             --------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             --------------------------ccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                      014889999999999999999999999999999999999887666655555555


Q ss_pred             cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEee
Q 007047          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       435 ~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                      .+++|.|+++....++..+++  .+++.++.|||+++|+.++.||+++++.+...+ .+|||+|||++++++||+|++.|
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G  427 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG  427 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCcccCCCCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence            588999987665555552444  455567899999999999999999999998888 78999999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC-----hHHHHHHHHHC
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC-----EEDTKKWAYSN  574 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~-----~~~~~~~~~~~  574 (620)
                      |+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++     .+++.++++++
T Consensus       428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~  495 (536)
T d1mdba_         428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER  495 (536)
T ss_dssp             EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHT
T ss_pred             CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            99999997 7999999999999999999999999986543   4789999874     35566666655

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=4e-58  Score=494.64  Aligned_cols=441  Identities=21%  Similarity=0.236  Sum_probs=351.0

Q ss_pred             cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (620)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA  120 (620)
                      ++||+++|+++|+++||++|+++.   ++.    +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            589999999999999999999986   432    6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (620)
Q Consensus       121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (620)
                      |+++|++++|+++.++.+++.+++++++++++|++........  .... .....++.                     +
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~---------------------~  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIF---------------------L  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEE---------------------H
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-cccccccc---------------------c
Confidence            9999999999999999999999999999999999876432111  1111 12222332                     2


Q ss_pred             HHHHhcCc----cCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (620)
Q Consensus       201 ~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (620)
                      .++.....    ..........++++++++|||||||.||+|+++|.++...+......+   .......+++++.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222211    112333456789999999999999999999999999999887765543   12446678999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (620)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (620)
                      |..+... .+.+...++.+++... ++..+...+..++++.+..+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8887775 4556666777776665 9999999999999999999999998876533322110                  


Q ss_pred             HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccc
Q 007047          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (620)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (620)
                                       .        ..++||.+++||+++++++..++...++..+.+.||.||++..+..........
T Consensus       269 -----------------~--------~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         269 -----------------L--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             -----------------C--------CCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             -----------------c--------cccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                             0        114899999999999999999999988999999999999988777666544332


Q ss_pred             cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec-CCcccccCCChhhhhccccCCcccccceEEEccCCcEEEee
Q 007047          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (620)
Q Consensus       435 ~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g-~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~G  513 (620)
                       .+.+.+.+.....+.+ ..+  ..++.|+.|++.+.+ +....+|+++++.|.+.|.||||+|||+|++++||+|+++|
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~--~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G  399 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVD--EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG  399 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTT--CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             -ccccccccceeeeeec-ccC--cccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence             3333333333333333 222  344566889887766 55677899999999999999999999999999999999999


Q ss_pred             cccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC
Q 007047          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (620)
Q Consensus       514 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~  563 (620)
                      |+||+||+ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++
T Consensus       400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~  451 (503)
T d3cw9a1         400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR  451 (503)
T ss_dssp             ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred             CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeC
Confidence            99999997 7999999999999999999999999986544   4899999985