Citrus Sinensis ID: 007048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620
MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
cHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccEEEEEcccHHHHHHHHcccccEEEEEEEccccccccccccccEEEEEccEEEEEcccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEEEccHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHccccEEEccccccccccccEEEcHHHHHHHHHHcccccccEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEccccEEccccccccccccEEEEcEEEEEcHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEccEEcccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEccccccEEEEcccccccccEEEEcHHHHHHHHccccccEcccccccccccccEEcHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHEccc
MKELKDVLtklglpkqgkkqdLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAedslnlggkifcpcgtslpseskiqcvdprclvqqhiscviipekpmeeirllpplffcetcrikradpfWITVAHLVSpmklvasniptdgtnpLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLvrtvnrpgtqllgsngrddGALITLYIGegvnqislsgcdirnfcFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCfggvatgnedgdsdlEIIADSIIVnlrcpmsgsrirvagrfkpcvhtgcfdLETFVELNQRtrkwqcpicmknysledliidpYFHRITTMMRNFADDLTEIEvkhdgswrvkckgennnlaewhspdgstyaarsevvsnsetkqLVNSGQTIIARIKKNLSanvdvskywstspnkhmsyhvENNSEKIITmsssasgcsrdeedptvnqdtnsrkdlndiphridpifgtgnqtdgligdtdiivlsdseedndhlapstsyqsyhpidsapdgisslrgdpkctrtndakifdgpfsfprqprsvrqkvhls
mkelkdvltklglpkqgkkqdlvDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPgtqllgsngrdDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVlslvpketagevfedalTRVRRCFGgvatgnedgdsdlEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVsnsetkqlvnSGQTIIARIKKNLSANVDVSKYwstspnkhmsyHVENNSEKIITMSssasgcsrdeedptvnqdtnsrkdlndipHRIDPIfgtgnqtdgliGDTDIIVLSDSEEDNDHLapstsyqsyhpidsapdgisslrgdPKCTRTNDakifdgpfsfprqprsvrqkvhls
MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
********************DLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEW**************************GQTIIARIKKNLSANVDVSKYWS****************************************************RIDPIFGTGNQTDGLIGDTDIIVL*******************************************************************
MKELKDVLTKLG*****KKQDLVDRIFHQLSDEGVARIIDDTY*******************************************************************************************CRIKRADPFWITVAHLVSPMKL************LQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVR*****************GALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC************SDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWR*************************************************************************************************************************************************************************************************************
MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITM********************NSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQ***********
MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQIS*******************************************SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVK*******************************************************************************************EEDPTVN*D*NSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDS***N*H*****SYQ******************************DGPFSFPRQ***********
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MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGISSLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query620 2.2.26 [Sep-21-2011]
Q680Q4 884 E3 SUMO-protein ligase SI yes no 0.972 0.682 0.504 1e-172
Q6L4L4 875 E3 SUMO-protein ligase SI yes no 0.904 0.641 0.507 1e-166
Q6ASW7 813 E3 SUMO-protein ligase SI no no 0.883 0.674 0.471 1e-147
Q6P1E11072 Zinc finger MIZ domain-co yes no 0.367 0.212 0.280 3e-18
Q9ULJ61067 Zinc finger MIZ domain-co yes no 0.367 0.213 0.280 3e-18
O94451 727 E3 SUMO-protein ligase pl yes no 0.420 0.359 0.27 6e-17
Q8NF64920 Zinc finger MIZ domain-co no no 0.358 0.241 0.273 3e-16
Q8CIE2920 Zinc finger MIZ domain-co no no 0.358 0.241 0.268 7e-16
Q6AZ28572 E3 SUMO-protein ligase PI no no 0.611 0.662 0.259 2e-14
O75928621 E3 SUMO-protein ligase PI no no 0.345 0.344 0.291 4e-14
>sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2 Back     alignment and function desciption
 Score =  606 bits (1562), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 336/666 (50%), Positives = 431/666 (64%), Gaps = 63/666 (9%)

Query: 1   MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE---------------GVARIIDDTYRK 45
           +KELKDVLT+LGL KQGKKQ+LVDRI   LSDE                VA+++DDTYRK
Sbjct: 16  IKELKDVLTQLGLSKQGKKQELVDRILTLLSDEQAARLLSKKNTVAKEAVAKLVDDTYRK 75

Query: 46  MQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCL 105
           MQ+S A+DLA  GQ   D  N+KV+ E ED      K+ C CG SL ++S IQC DPRC 
Sbjct: 76  MQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCH 135

Query: 106 VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDG 165
           V QH+ CVI+P+KPM+    LP  F+CE CR+ RADPFW+TVAH +SP++L A+ IP DG
Sbjct: 136 VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTRADPFWVTVAHPLSPVRLTATTIPNDG 195

Query: 166 TNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRT 225
            + +Q  E  F +T+A  DLL   EYDVQAWC+LLNDKV FRMQWP +A+LQVNG+ VR 
Sbjct: 196 ASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQWPQYADLQVNGVPVRA 255

Query: 226 VNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLV 285
           +NRPG QLLG NGRDDG +IT  I +GVN+ISLSG D+R FCFGVRLVKR+T+ QVL+L+
Sbjct: 256 INRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFGVRLVKRRTLQQVLNLI 315

Query: 286 PKETAGEVFEDALTRVRRCF-GGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGR 344
           P+E  GE FEDAL RVRRC  GG    N D DSD+E++AD   VNLRCPMSGSRI+VAGR
Sbjct: 316 PEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVNLRCPMSGSRIKVAGR 375

Query: 345 FKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLT 404
           F PCVH GCFDL+ FVELNQR+RKWQCPIC+KNYS+E +I+DPYF+RIT+ M++  +++T
Sbjct: 376 FLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSKMKHCDEEVT 435

Query: 405 EIEVKHDGSWRVKCKGEN-----NNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQT-- 457
           EIEVK DGSWRVK K E+       L++WH+PDGS   +  ++    E   +   G +  
Sbjct: 436 EIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQEGYSDG 495

Query: 458 ---IIARIKKNLSANVDVSK-----YWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDE 509
              +   I+KN +   +VSK       S++  + + Y  +N    II MSSSA+G  RD 
Sbjct: 496 PAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKN----IIPMSSSATGSGRDG 551

Query: 510 EDPTVNQDTNSRKDLNDIPHRIDPI---------FGTGNQTDGLIGDTDIIVLSDSEEDN 560
           +D +VNQD     D       +D I         F   NQ+ G  G+ ++IVLSDS+++N
Sbjct: 552 DDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQS-GEGGNNEVIVLSDSDDEN 610

Query: 561 DH-LAPSTSYQSYH-------PIDSAPDGISSLRGDPKCTRT--------NDAKIFDGP- 603
           D  + P  +Y           P++  P  I+S   DP             ND   FD P 
Sbjct: 611 DLVITPGPAYSGCQTDGGLTFPLN-PPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPL 669

Query: 604 FSFPRQ 609
           +SFP +
Sbjct: 670 WSFPSE 675
E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing tolerance by mediating sumoylation of ICE1, a transcription activator of the cold signaling regulator CBF3/DREB1A. Acts as positive regulator of drought stress tolerance. Acts as floral repressor that promotes FLC expression by repressing FLD activity through sumoylation. Acts as negative regulator of abscisic acid (ABA) signaling through ABI5 sumoylation. Mediates sumoylation of SCE1, GTE3 and GTE5.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q6L4L4|SIZ1_ORYSJ E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ASW7|SIZ2_ORYSJ E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P1E1|ZMIZ1_MOUSE Zinc finger MIZ domain-containing protein 1 OS=Mus musculus GN=Zmiz1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULJ6|ZMIZ1_HUMAN Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3 Back     alignment and function description
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3 Back     alignment and function description
>sp|Q8NF64|ZMIZ2_HUMAN Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2 Back     alignment and function description
>sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2 OS=Mus musculus GN=Zmiz2 PE=2 SV=2 Back     alignment and function description
>sp|Q6AZ28|PIAS2_RAT E3 SUMO-protein ligase PIAS2 OS=Rattus norvegicus GN=Pias2 PE=1 SV=1 Back     alignment and function description
>sp|O75928|PIAS2_HUMAN E3 SUMO-protein ligase PIAS2 OS=Homo sapiens GN=PIAS2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
255570825 876 sumo ligase, putative [Ricinus communis] 0.940 0.665 0.529 0.0
225435251 876 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.908 0.642 0.554 1e-180
224112985614 predicted protein [Populus trichocarpa] 0.903 0.912 0.544 1e-176
449459066 869 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.929 0.662 0.528 1e-176
356550167 880 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.922 0.65 0.523 1e-175
356550169 885 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.922 0.646 0.523 1e-175
224132486636 predicted protein [Populus trichocarpa] 0.917 0.894 0.524 1e-174
297819032 873 predicted protein [Arabidopsis lyrata su 0.958 0.680 0.503 1e-173
356543434 895 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.922 0.639 0.518 1e-173
356543432 882 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.922 0.648 0.518 1e-173
>gi|255570825|ref|XP_002526365.1| sumo ligase, putative [Ricinus communis] gi|223534324|gb|EEF36036.1| sumo ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/631 (52%), Positives = 433/631 (68%), Gaps = 48/631 (7%)

Query: 1   MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGV---------------ARIIDDTYRK 45
           +KELKDVLT+LGL KQGKKQDLVDRI   L+DE V               A+++DD YRK
Sbjct: 16  IKELKDVLTQLGLSKQGKKQDLVDRILAVLTDEQVPKTSAKKSVVGKEEVAKLVDDIYRK 75

Query: 46  MQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCL 105
           MQ+S A DLA  G+  L+     ++ E +DS +   K+ CPCG+SL +ES I+C DPRC 
Sbjct: 76  MQVSGATDLASKGEGVLESSKPVIKGEIDDSFHFDTKVRCPCGSSLETESMIKCEDPRCR 135

Query: 106 VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDG 165
           V QHI CVIIPEKPME I  +P LF+CE CR+ RADPFW++VAH + P+KL  +NI  DG
Sbjct: 136 VWQHIGCVIIPEKPMEAIPQVPDLFYCEICRLCRADPFWVSVAHPLYPVKLT-TNIQADG 194

Query: 166 TNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRT 225
           + P+Q AE  FHLT+A  DLL   EYDVQAWC+LLNDKV FRMQWP +A+LQVNG+ VR 
Sbjct: 195 STPVQSAEKTFHLTRADKDLLAKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRA 254

Query: 226 VNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLV 285
           +NRPG+QLLG NGRDDG +IT    +G+N+ISL+GCD R FC GVR+VKR+TV Q+L+++
Sbjct: 255 INRPGSQLLGINGRDDGPIITPCTKDGINKISLNGCDARIFCLGVRIVKRRTVQQILNMI 314

Query: 286 PKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRF 345
           PKE+ GE FEDAL RV RC GG A  N D DSDLE++ADS  VNLRCPMSGSR++VAGRF
Sbjct: 315 PKESDGERFEDALARVCRCVGGGAADNADSDSDLEVVADSFAVNLRCPMSGSRMKVAGRF 374

Query: 346 KPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTE 405
           KPC H GCFDLE F+E+NQR+RKWQCP+C+KNYSLE++IIDPYF+R+T+ M++  +D+TE
Sbjct: 375 KPCAHMGCFDLEVFLEMNQRSRKWQCPVCLKNYSLENVIIDPYFNRVTSKMQHCGEDITE 434

Query: 406 IEVKHDGSWRVKCKGEN-----NNLAEWHSPDGS-----TYAARSEVVSNSETKQLVNS- 454
           IEVK DGSWR K K E        LA+WH+PDGS     +   +S+V    + KQ  NS 
Sbjct: 435 IEVKPDGSWRAKTKSEAERRDVGELAQWHNPDGSLCVPISGEHKSKVEMEKQIKQEGNSE 494

Query: 455 ---GQTIIARIKKNLSANVDVSK---YWSTSPNKHMSYHVENNSEKIITMSSSASGCSRD 508
              G  +   I+KN +   +VSK     ++S    +    E   +K+I MSSSA+G  RD
Sbjct: 495 GYNGTGLKLGIRKNRNGFWEVSKPEDVNTSSSGNRLPERFEIIEQKVIPMSSSATGSGRD 554

Query: 509 EEDPTVNQD-------TNSRKDLNDIPHRIDPIFGTGNQT-DGLIGDTDIIVLSDSEEDN 560
            EDP+VNQD       TN+  +L+ +P  +D  +G  ++     + D ++IVLSDS++DN
Sbjct: 555 GEDPSVNQDGGGNFDFTNNGIELDSLPLNVDSTYGFPDRNFSAPVEDPEVIVLSDSDDDN 614

Query: 561 DHLAPS-TSYQSYHPIDSA------PDGISS 584
           D L  + T Y++    D        P+GIS+
Sbjct: 615 DILMTTGTVYKNSQTDDGGAGFSMPPNGISN 645

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435251|ref|XP_002284945.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112985|ref|XP_002316352.1| predicted protein [Populus trichocarpa] gi|222865392|gb|EEF02523.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459066|ref|XP_004147267.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] gi|449511458|ref|XP_004163961.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550167|ref|XP_003543460.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356550169|ref|XP_003543461.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224132486|ref|XP_002328293.1| predicted protein [Populus trichocarpa] gi|222837808|gb|EEE76173.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297819032|ref|XP_002877399.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323237|gb|EFH53658.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356543434|ref|XP_003540165.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356543432|ref|XP_003540164.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
ZFIN|ZDB-GENE-080220-271068 zmiz1a "zinc finger, MIZ-type 0.409 0.237 0.298 4.4e-19
UNIPROTKB|F1NFB5970 F1NFB5 "Uncharacterized protei 0.409 0.261 0.288 9.8e-18
UNIPROTKB|I3L8P9943 I3L8P9 "Uncharacterized protei 0.409 0.269 0.288 2.6e-17
UNIPROTKB|I3LDU8985 I3LDU8 "Uncharacterized protei 0.409 0.257 0.288 2.7e-17
UNIPROTKB|I3LJD11021 ZMIZ1 "Uncharacterized protein 0.409 0.248 0.288 2.9e-17
UNIPROTKB|F1MP121066 ZMIZ1 "Uncharacterized protein 0.409 0.238 0.288 3.1e-17
UNIPROTKB|Q9ULJ61067 ZMIZ1 "Zinc finger MIZ domain- 0.409 0.238 0.288 3.1e-17
UNIPROTKB|E2RGZ01072 ZMIZ1 "Uncharacterized protein 0.409 0.236 0.288 3.1e-17
UNIPROTKB|F1S2E41072 ZMIZ1 "Uncharacterized protein 0.409 0.236 0.288 3.1e-17
MGI|MGI:30406931072 Zmiz1 "zinc finger, MIZ-type c 0.409 0.236 0.288 3.1e-17
ZFIN|ZDB-GENE-080220-27 zmiz1a "zinc finger, MIZ-type containing 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 264 (98.0 bits), Expect = 4.4e-19, P = 4.4e-19
 Identities = 84/281 (29%), Positives = 137/281 (48%)

Query:   176 FHLTKA-HSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLL 234
             FHL  + H  L+  ++ ++Q  C    D+      WP   ++ VN   + T+ R      
Sbjct:   590 FHLRPSVHQTLMWRSDLELQFKCYHHEDR-QMNTNWPASVQVSVNATPL-TIER------ 641

Query:   235 GSNGRDDGALITLYI---GEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAG 291
             G N      L   ++   G    QI+++ C   +  F ++LV R +V  VL  + K+   
Sbjct:   642 GDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHL-FVLQLVHRPSVRSVLQGLLKKRLL 700

Query:   292 EVFEDALTRVRRCFGGVA--TGNE--DGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKP 347
                E  +T+++R F  VA  TGN   +G+  +E  A  I V+L+CP++  RI++  R   
Sbjct:   701 PA-EHCITKIKRNFSSVAASTGNATLNGEDGVEQTA--IKVSLKCPITFRRIQLPARGHD 757

Query:   348 CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIE 407
             C H  CFDLE++++LN     W+CP+C K   LE L +D Y   I   ++N   +  E+ 
Sbjct:   758 CKHVQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQN--SEFEEVN 815

Query:   408 VKHDGSWR-VKCKGENNNLAEWHSPDGSTYAARSEVVSNSE 447
             +    SWR V  K + + + E   PDG   A R + +S S+
Sbjct:   816 IDPTCSWRPVPIKSDIH-IKE--DPDGPL-AKRFKTMSPSQ 852
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|F1NFB5 F1NFB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3L8P9 I3L8P9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDU8 I3LDU8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJD1 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MP12 ZMIZ1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULJ6 ZMIZ1 "Zinc finger MIZ domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ0 ZMIZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2E4 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:3040693 Zmiz1 "zinc finger, MIZ-type containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6L4L4SIZ1_ORYSJ6, ., 3, ., 2, ., -0.50740.90480.6411yesno
Q680Q4SIZ1_ARATH6, ., 3, ., 2, ., -0.50450.97250.6821yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.2569.1
hypothetical protein (614 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
pfam0289150 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger 1e-17
pfam0203735 pfam02037, SAP, SAP domain 3e-06
smart0051335 smart00513, SAP, Putative DNA-binding (bihelical) 6e-05
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger Back     alignment and domain information 
 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKN 377
           V+L+CP+S  RI +  R + C H  CFDL +F+E N+RT  W CP+C K 
Sbjct: 1   VSLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVCDKP 50

This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50
>gnl|CDD|202100 pfam02037, SAP, SAP domain Back     alignment and domain information
>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 620
KOG2169636 consensus Zn-finger transcription factor [Transcri 100.0
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 99.83
PF14324144 PINIT: PINIT domain; PDB: 3I2D_A. 99.65
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.42
KOG1973274 consensus Chromatin remodeling protein, contains P 97.86
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.65
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.63
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 97.45
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 97.28
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.05
KOG2979262 consensus Protein involved in DNA repair [General 96.99
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 96.86
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 95.51
KOG1844508 consensus PHD Zn-finger proteins [General function 95.47
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.3
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 92.72
COG5627275 MMS21 DNA repair protein MMS21 [DNA replication, r 92.57
COG5222427 Uncharacterized conserved protein, contains RING Z 91.31
KOG0957707 consensus PHD finger protein [General function pre 89.97
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 89.81
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 89.75
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 89.18
PF04641260 Rtf2: Rtf2 RING-finger 86.93
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 84.71
>KOG2169 consensus Zn-finger transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.1e-39  Score=363.15  Aligned_cols=366  Identities=22%  Similarity=0.388  Sum_probs=256.9

Q ss_pred             ChhHHHHH-HHcCCCCCC--chHHHHHHHHHhcChhH---HHHHHHHHHHH-hhcccchhhhhcccCCCccccceecccc
Q 007048            1 MKELKDVL-TKLGLPKQG--KKQDLVDRIFHQLSDEG---VARIIDDTYRK-MQISEAADLAIMGQSGLDICNVKVEMEA   73 (620)
Q Consensus         1 i~ELq~~L-~~~g~~K~G--kK~eL~~R~l~ll~~~~---v~~~I~e~y~~-~~~~~~~~~a~~~~~~~~~~~v~~~~~~   73 (620)
                      +.||+.++ ++.++++.|  +|.+|..|+|.++...+   ++.+|.++|++ +.+.......  .+.      ++.+...
T Consensus         5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~q~~i~~~~~~~~~~~~~~~~~--~~~------~~~~~~~   76 (636)
T KOG2169|consen    5 VSSLQVLLSGAIGRSFPGQVNKHKLAPRALTLVGSGCKPYLQMVIKELYQRQYPNGQQQPID--LPA------VKLHPNV   76 (636)
T ss_pred             cccccccchhhhccccccccchhhhhhhhhcccccCCchhhhhhhhhhhhhhcccccccccc--ccc------cccCCcc
Confidence            46888888 899999999  99999999999999988   89999999995 4333321110  010      1111111


Q ss_pred             cc-ccCCCCcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCCChhHhhhhccC
Q 007048           74 ED-SLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVS  152 (620)
Q Consensus        74 ~~-~~~~~~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~DPF~~~i~~lL~  152 (620)
                      .. .+. .          +            |....|..=..+..-.+.+    +..-+-+.-|+. ..|||+.+..+++
T Consensus        77 ~~~~~~-~----------~------------~~~~~~~~~~~~~~~~l~g----~~~~~~~~~~~~-~~~~y~~l~~~~~  128 (636)
T KOG2169|consen   77 VPPFYP-L----------L------------WQLLRHPTQQPVTPSSLLG----PPLPFHPDVKLK-KLPFYDVLSELIK  128 (636)
T ss_pred             cCcccc-c----------h------------hcccccCCCCCCCcccccC----CCCcCCCccccc-CCchheecccccC
Confidence            11 111 0          0            0000010000011000001    001122233554 6899999999999


Q ss_pred             ceeeeeccccCCCCCCcceEEEEEEecccccccccCC-C------ceEEEEEEeecCCccccccCCCceEEEECCeEeee
Q 007048          153 PMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT-E------YDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRT  225 (620)
Q Consensus       153 Pv~l~~s~i~~~g~~~~qs~~~~F~Lt~~~~~~L~~~-~------~~lqv~Ci~l~d~~~~~~~wP~~~~I~VNg~~v~~  225 (620)
                      |+.+.++..     ..++...+.|.|++++...+... +      ..-.+ |+.. ...+++.+||.++.++||+..+.+
T Consensus       129 p~~~~~~~~-----~~~~~~~~~f~lt~~~~~~i~~~~~~~~~~k~~~~~-~~~~-~s~p~e~~~p~~~~~~vn~~~~~l  201 (636)
T KOG2169|consen  129 PHVLHSSNS-----PSLSESPFLFALTPEQVSGISSRPDVLPGSKSEGSV-CLME-TSCPQEDHFPPNVQVKVNNSPCQL  201 (636)
T ss_pred             ceeecCcCC-----CCcccccchhhcchhhhhhcccccccccccccccce-eecc-ccCccccccCceeEEEecCCccee
Confidence            988875432     34567788999999987765321 1      11111 5553 456789999999999999998886


Q ss_pred             cCCCCcc---cCC-CCCCCCCCc-ccc--cccCc-ccEEEEEEe--ccceEEEEEEEEeecCHHHHHHhccccCC-CCcH
Q 007048          226 VNRPGTQ---LLG-SNGRDDGAL-ITL--YIGEG-VNQISLSGC--DIRNFCFGVRLVKRQTVAQVLSLVPKETA-GEVF  294 (620)
Q Consensus       226 ~~rP~~~---~~g-~~~R~~~p~-IT~--~lk~g-~N~I~Is~~--d~~~y~~~V~lVk~~s~eqLl~~I~~~~~-~~~~  294 (620)
                      ..  +..   ..+ ..+|...|. ||.  ++..- .|.+.+.|.  ..+.|.+++|+|+.++.++||++++.... ...+
T Consensus       202 ~~--~~~~~n~~~~~~~~~~~P~n~t~~~~~~~~~~~~~~~~~~~~~~~~ysl~~~~v~~~t~~~llq~~~~~~~~~~~~  279 (636)
T KOG2169|consen  202 PF--GYMPNNKHGLEPKRPSRPGNITSLSRLSVTTPNQITVLWTAQGGKSYSLSVYFVEGLTSKDLLQRLKQNGKINRNL  279 (636)
T ss_pred             ec--cccCCCCcccccCCCCCCCcCcccccccccccccceEEEEeccCcccceEEEEecccCHHHHHHHHhccCCccCch
Confidence            41  221   111 135666666 998  55443 377777664  57899999999999999999999876422 2333


Q ss_pred             HHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCC
Q 007048          295 EDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPIC  374 (620)
Q Consensus       295 edal~rIkr~l~~~~~~~~dsDdD~eIv~~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC  374 (620)
                      +...+.+++.+        ..+.|.||+++++.|||.|||+++||++|+|+..|+|+||||+.+||+||+++++|+||||
T Consensus       280 ~~s~~~~~~~l--------~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC  351 (636)
T KOG2169|consen  280 SQSDALIKKKL--------TAGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVC  351 (636)
T ss_pred             hHhHHHhhccc--------ccCCcccceeccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccC
Confidence            55666666543        2345567999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeecHHHHHHHHHHhcCCCCceEEEEccCCcEEEeccCCC
Q 007048          375 MKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGEN  422 (620)
Q Consensus       375 ~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~  422 (620)
                      ++.+.+++|+||+||+.||   .+|..+++||++..||+|++...+++
T Consensus       352 ~~~~~~e~l~iD~~~~~iL---~~~~~~~~ev~~~~dGsw~pi~~~~~  396 (636)
T KOG2169|consen  352 QKAAPFEGLIIDGYFLNIL---QSCQANVEEVEVSEDGSWKPIPEEAE  396 (636)
T ss_pred             CccccccchhhhHHHHHHH---hhccCCCcceEecCCCceecCccccc
Confidence            9999999999999999995   45667899999999999999877654

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
4fo9_A360 Crystal Structure Of The E3 Sumo Ligase Pias2 Lengt 5e-15
2rno_A110 Solution Structure Of The N-Terminal Sap Domain Of 3e-14
2rsd_A68 Solution Structure Of The Plant Homeodomain (Phd) O 4e-12
1wew_A78 Solution Structure Of Phd Domain In Dna-Binding Fam 5e-12
3i2d_A371 Crystal Structure Of S. Cerevisiae Sumo E3 Ligase S 8e-11
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2 Length = 360 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 107/247 (43%), Gaps = 33/247 (13%)
Query: 172 AEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGT 231
            +    L  A +   Q   Y   + CI +N K+      P +A    NG+      RPG 
Sbjct: 79  VQVQLRLCLAETSCPQEDNYP-NSLCIKVNGKL---FPLPGYAPPPKNGI---EQKRPGR 131
Query: 232 QL-LGSNGRDDGALITLYIGEGVNQISLS-GCDI-RNFCFGVRLVKRQTVAQVLS-LVPK 287
            L + S  R   A+         NQIS+S   +I +N+   V LV++ T A +L  L  K
Sbjct: 132 PLNITSLVRLSSAV--------PNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMK 183
Query: 288 ETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKP 347
                    AL + +             D D EI   S+ V+L CP+   R+ +  R   
Sbjct: 184 GIRNPDHSRALIKEKL----------TADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVT 233
Query: 348 CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIE 407
           C H  CFD   ++++N++   W CP+C K  + E LI+D  F  I     N   D+ EI+
Sbjct: 234 CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL----NDCSDVDEIK 289
Query: 408 VKHDGSW 414
            + DGSW
Sbjct: 290 FQEDGSW 296
>pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3 Ligases From Oryza Sativa Length = 110 Back     alignment and structure
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The E3 Sumo Ligase Siz1 From Rice Length = 68 Back     alignment and structure
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family Protein Aam98074 Length = 78 Back     alignment and structure
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1 Length = 371 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 7e-57
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 2e-51
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 3e-20
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 4e-17
1wew_A78 DNA-binding family protein; structural genomics, P 5e-16
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 8e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-07
1wem_A76 Death associated transcription factor 1; structura 6e-07
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 2e-05
1wee_A72 PHD finger family protein; structural genomics, PH 1e-04
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 Back     alignment and structure
 Score =  195 bits (496), Expect = 7e-57
 Identities = 62/318 (19%), Positives = 133/318 (41%), Gaps = 31/318 (9%)

Query: 139 RADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT--EYDVQAW 196
           +  PF+  +  L+         +  + T       A F L+KA  +LL N   ++ +  +
Sbjct: 69  KESPFY-KIQRLIPE-----LVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLF 122

Query: 197 CIL---LNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGV 253
             +   L  + +  +Q+P   EL+ N + ++   R      G+    D   +T ++    
Sbjct: 123 SGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPAD---LTPHLKPYT 179

Query: 254 NQISLS---GCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVAT 310
            Q ++        + +     +V+  T  Q+L  V +       +  L  +++       
Sbjct: 180 QQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKII-KQATLLYLKKTL----- 233

Query: 311 GNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQ 370
                D ++ +   S I++L+CP+S +R++   +   C H  CFD   F+    +   WQ
Sbjct: 234 ---REDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQ 290

Query: 371 CPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHS 430
           CP+C  + +LE+L I  +   I   ++N   ++ ++E+  DG W    + ++++  +  S
Sbjct: 291 CPVCQIDIALENLAISEFVDDI---LQNCQKNVEQVELTSDGKWTAILEDDDDS--DSDS 345

Query: 431 PDGSTYAARSEVVSNSET 448
            DGS    +  +   +  
Sbjct: 346 NDGSRSPEKGTLGEGAAA 363
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Length = 110 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 100.0
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 100.0
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 99.83
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 99.35
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.3
1wew_A78 DNA-binding family protein; structural genomics, P 99.18
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.71
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.65
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 98.56
3o70_A68 PHD finger protein 13; PHF13, structural genomics 98.55
1wee_A72 PHD finger family protein; structural genomics, PH 98.42
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 98.37
1wem_A76 Death associated transcription factor 1; structura 98.35
1we9_A64 PHD finger family protein; structural genomics, PH 98.33
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 98.31
1weu_A91 Inhibitor of growth family, member 4; structural g 98.27
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.97
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.97
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.93
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.9
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.82
3kv5_D488 JMJC domain-containing histone demethylation prote 97.81
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 97.66
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.63
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.63
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 97.55
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 97.53
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.13
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 97.02
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 96.9
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 96.82
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 96.77
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 96.76
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 96.61
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 96.58
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 96.57
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 96.43
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.42
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 96.31
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 96.24
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 96.2
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 96.2
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 96.18
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 95.93
2f42_A179 STIP1 homology and U-box containing protein 1; cha 95.7
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 95.44
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 95.35
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 95.33
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 95.05
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 95.05
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 94.99
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 94.87
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 94.87
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 94.85
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 94.84
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 94.73
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 94.59
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 94.37
1z6u_A150 NP95-like ring finger protein isoform B; structura 94.25
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 94.21
2ecw_A85 Tripartite motif-containing protein 30; metal bind 93.98
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 93.68
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 93.41
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 92.6
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 92.46
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 92.27
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 92.16
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 92.15
2ysl_A73 Tripartite motif-containing protein 31; ring-type 92.14
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 92.08
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 92.01
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 91.7
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 91.69
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 91.39
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 91.32
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 91.01
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 90.93
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 90.32
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 90.16
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 90.1
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 89.95
2yt5_A66 Metal-response element-binding transcription facto 88.76
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 88.6
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 88.45
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 86.86
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 86.85
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 86.4
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 86.17
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 85.72
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 85.43
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 84.84
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 84.81
2ect_A78 Ring finger protein 126; metal binding protein, st 84.81
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 84.71
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 84.48
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 82.12
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 81.52
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 81.21
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 80.65
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 80.53
2ecm_A55 Ring finger and CHY zinc finger domain- containing 80.46
2ysj_A63 Tripartite motif-containing protein 31; ring-type 80.3
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
Probab=100.00  E-value=4.1e-55  Score=460.80  Aligned_cols=283  Identities=26%  Similarity=0.423  Sum_probs=210.5

Q ss_pred             ccccCCChhHhhhhccCceeeeeccccCCCCCCcceEEEEEEecccccccccC---------CCceEEE---EEEeecCC
Q 007048          136 RIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN---------TEYDVQA---WCILLNDK  203 (620)
Q Consensus       136 RL~~~DPF~~~i~~lL~Pv~l~~s~i~~~g~~~~qs~~~~F~Lt~~~~~~L~~---------~~~~lqv---~Ci~l~d~  203 (620)
                      +++ .+|||+++++|++|+.|.++     ++.++|+..|.|.||++|...++.         .+|.+||   +|+. ++.
T Consensus        19 ~~k-~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~-~~~   91 (360)
T 4fo9_A           19 QLK-NLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLA-ETS   91 (360)
T ss_dssp             CBC-CCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC--C-
T ss_pred             eec-CCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEc-cCC
Confidence            666 47999999999999999764     356788999999999999877753         2455555   4765 567


Q ss_pred             ccccccCCCceEEEECCeEeeecCCCCcccCCC-CCCCCCCc-ccccccCc---ccEEEEEEe-c-cceEEEEEEEEeec
Q 007048          204 VSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGS-NGRDDGAL-ITLYIGEG---VNQISLSGC-D-IRNFCFGVRLVKRQ  276 (620)
Q Consensus       204 ~~~~~~wP~~~~I~VNg~~v~~~~rP~~~~~g~-~~R~~~p~-IT~~lk~g---~N~I~Is~~-d-~~~y~~~V~lVk~~  276 (620)
                      .++++.||.+++|+|||+.|+....-..++.|. ++|...|+ ||++++.+   .|+|+|+|. + ++.|+++|++|+++
T Consensus        92 ~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV~~~  171 (360)
T 4fo9_A           92 CPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQL  171 (360)
T ss_dssp             CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEEEEC
T ss_pred             CcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEEEeC
Confidence            789999999999999999999742101123332 45556665 99999987   599999996 3 68999999999999


Q ss_pred             CHHHHHHhccccCCCCcHHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEeecCCCCccceeccccCCCcCcccccCH
Q 007048          277 TVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL  356 (620)
Q Consensus       277 s~eqLl~~I~~~~~~~~~edal~rIkr~l~~~~~~~~dsDdD~eIv~~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl  356 (620)
                      |+++|++.|+++ ...+.++++++|++.+..        |+|.||+++++.|||+||||++||++||||..|+|+|||||
T Consensus       172 s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~--------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl  242 (360)
T 4fo9_A          172 TSAMLLQRLKMK-GIRNPDHSRALIKEKLTA--------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDA  242 (360)
T ss_dssp             CHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEH
T ss_pred             CHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc--------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccCCH
Confidence            999999999863 356778899999998741        23446889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHhcCCCCceEEEEccCCcEEEeccCC---CCCCccccCCCC
Q 007048          357 ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGE---NNNLAEWHSPDG  433 (620)
Q Consensus       357 ~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e---~~~~~~w~~p~g  433 (620)
                      ++||+|+++.++|+||||++.+++++|+||+||++||+   .+ .++++|+|++||+|++...+.   +....+|...||
T Consensus       243 ~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e~~~~~~~~~~~~~~  318 (360)
T 4fo9_A          243 ALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIES  318 (360)
T ss_dssp             HHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC--------------------
T ss_pred             HHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcccccccCCCCCCccc
Confidence            99999999999999999999999999999999999964   45 489999999999999853332   245557777676


Q ss_pred             Ccccc
Q 007048          434 STYAA  438 (620)
Q Consensus       434 ~~~~~  438 (620)
                      .-.++
T Consensus       319 ~~~~~  323 (360)
T 4fo9_A          319 SSVLS  323 (360)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            55443
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Back     alignment and structure
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 620
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 5e-12
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 7e-07
d1jeqa151 a.140.2.1 (A:559-609) DNA binding C-terminal domai 2e-05
d1zrja137 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle 2e-04
d1h1js_44 a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak 2e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 8e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 9e-04
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 0.002
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 0.003
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 0.003
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.4 bits (143), Expect = 5e-12
 Identities = 33/68 (48%), Positives = 42/68 (61%)

Query: 72  EAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFF 131
             ED      K+ C CG SL ++S IQC DPRC V QH+ CVI+P+KPM+    LP  F+
Sbjct: 6   SGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFY 65

Query: 132 CETCRIKR 139
           CE CR+  
Sbjct: 66  CEICRLTS 73
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
d1v66a_65 p53 binding domain of protein inhibitor of activat 99.39
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.73
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.2
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.16
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.95
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.85
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.79
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.6
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 97.6
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.33
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.14
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 96.95
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 96.89
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.72
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 96.7
d2c2la280 STIP1 homology and U box-containing protein 1, STU 96.55
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 96.45
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 95.95
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 95.79
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 95.07
d1kcfa136 Mitochondrial resolvase ydc2 N-terminal domain {Fi 93.96
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 93.26
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 92.8
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 92.23
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 88.57
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 82.5
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.6e-14  Score=110.66  Aligned_cols=46  Identities=30%  Similarity=0.490  Sum_probs=43.6

Q ss_pred             ChhHHHHHHHcCCCCCCchHHHHHHHHHhcChhH---HHHHHHHHHHHh
Q 007048            1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKM   46 (620)
Q Consensus         1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~~~---v~~~I~e~y~~~   46 (620)
                      |+|||++|+++|+||||+|+||++|||+||+.++   |..+|+|+|+++
T Consensus        16 VsELQ~LLg~~gr~KsGrK~eL~~RaL~LL~~~~~~~v~~kIrelY~~R   64 (65)
T d1v66a_          16 VSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR   64 (65)
T ss_dssp             HHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence            5899999999999999999999999999999877   889999999984
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure