Citrus Sinensis ID: 007119
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LKS5 | 700 | Long chain acyl-CoA synth | yes | no | 0.978 | 0.862 | 0.738 | 0.0 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.965 | 0.850 | 0.797 | 0.0 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.828 | 0.766 | 0.434 | 1e-126 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | yes | no | 0.862 | 0.762 | 0.423 | 1e-122 | |
| P33124 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.808 | 0.715 | 0.457 | 1e-120 | |
| Q91WC3 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.808 | 0.715 | 0.455 | 1e-120 | |
| Q9UKU0 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.808 | 0.715 | 0.461 | 1e-120 | |
| P41216 | 699 | Long-chain-fatty-acid--Co | no | no | 0.858 | 0.758 | 0.428 | 1e-119 | |
| P33121 | 698 | Long-chain-fatty-acid--Co | no | no | 0.858 | 0.759 | 0.417 | 1e-119 | |
| P18163 | 699 | Long-chain-fatty-acid--Co | no | no | 0.858 | 0.758 | 0.419 | 1e-118 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/608 (73%), Positives = 529/608 (87%), Gaps = 4/608 (0%)
Query: 3 STAAQRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNV 58
++ QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNV
Sbjct: 4 ASPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNV 63
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGE
Sbjct: 64 YRSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGE 123
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
A + R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK
Sbjct: 124 AASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVK 183
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
++VNHA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y
Sbjct: 184 FVVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQK 243
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
LLSQGRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSD
Sbjct: 244 LLSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSD 303
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY
Sbjct: 304 VYISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIY 363
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
GITSAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGS
Sbjct: 364 DGITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGS 423
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVD
Sbjct: 424 GASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVD 483
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRL
Sbjct: 484 VPEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRL 543
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598
KIIDRKKNIFKLAQGEYIA EKIENVY KC+FV QCF++GDSFNS+LVAIVSVD + +K
Sbjct: 544 KIIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKD 603
Query: 599 WAASEGIQ 606
WAASEGI+
Sbjct: 604 WAASEGIK 611
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/597 (79%), Positives = 546/597 (91%), Gaps = 1/597 (0%)
Query: 10 LKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV 69
+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS++SP KLV
Sbjct: 16 INAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAKSPFKLV 74
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
SRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTART +GSG
Sbjct: 75 SRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSG 134
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVNHA+VQA+
Sbjct: 135 LVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAI 194
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+QGRSN Q
Sbjct: 195 FCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQR 254
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYISYLPLAHI
Sbjct: 255 FFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHI 314
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
YERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI +AV+TSG
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
GL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASPLSP+V++
Sbjct: 375 GLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVME 434
Query: 430 FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEMNYTS DQ
Sbjct: 435 FLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQ 494
Query: 490 PCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
P PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIIDRKKNIFK
Sbjct: 495 PHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 554
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ 606
LAQGEYIA EKIENVYAKCKFVGQCF+YGDSFNS+LVA+VSVD D LK+WAASEGI+
Sbjct: 555 LAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIK 611
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/525 (43%), Positives = 327/525 (62%), Gaps = 14/525 (2%)
Query: 86 VRAVDTFRDYKYLGTR-VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V ++ D +LG R + DG G+YKW++Y +A +GS L+ G++KG IG++
Sbjct: 59 VYRINKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIF 118
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS 204
+NRPEW++ D A +S + V LY TLG +A++Y+VNH+ + + C + + +LS
Sbjct: 119 SINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILSMPG 178
Query: 205 EVPTVRLIVVIGGIDDQIPSLPI-----TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
T++ IV D +P + V++ S+ G N P P+D+
Sbjct: 179 T--TIKTIVSY----DPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLC 232
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHIYERANQVMT 318
T+ YTSG+TG PKG +L+H N+++ VAGA P DV++SYLPLAH +ERA +
Sbjct: 233 TLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGVIPEDVHMSYLPLAHSFERAVVSLM 292
Query: 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
Y G +GF+ G +L +D+ LRPT C PR++ R++ + V L++ LFN
Sbjct: 293 CYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNW 352
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
N+K+ A+ G +P+WD+LVF+K KD+LGGRV+F+ SG++PL P + +FL+ CF
Sbjct: 353 GLNSKQSALRLGST-TPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCP 411
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
V GYG++E S DN GHVG P +ACE+KL+DVPEMNY S D+PCPRGE+C+
Sbjct: 412 VVSGYGLSENVGGASVAYPEDNNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCI 471
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
RG +FKGY+KD +TKE + EDGWFHTGDIG W G L IIDRKKNIFKL+QGEY+AA
Sbjct: 472 RGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIFKLSQGEYVAA 531
Query: 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
E +E+V+ + F Q FVYGDS NS LV +V D + ++ AS+
Sbjct: 532 EYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASK 576
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Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/553 (42%), Positives = 339/553 (61%), Gaps = 21/553 (3%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R + D Y+W++Y + +GS L+ G
Sbjct: 86 YDDVRTLYDVFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVEDLSECIGSALLQKG 141
Query: 135 I--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+I++ AC AYS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 142 FQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 201
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IVV+ ++ GV++++ + GR+N +
Sbjct: 202 KPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRK 261
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+PDD+A IC+TSGTTG PKGA+++H N+++ + T+ SD++IS+LP
Sbjct: 262 PKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLP 321
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F VPRL NR++ I +
Sbjct: 322 LAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQA 381
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
T+ ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 382 NTT--VKRWLLDFASKRKEAELRSGIIRNNS-VWDKLIFHKIQSSLGGKVRLMVTGAAPV 438
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G + EGYG TE + S GD +GHVG+P IKLVDV EMN
Sbjct: 439 SATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMN 498
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y + GE+CV+GP +FKGY KD +T E +D+DGW HTGDIG W+P G LKIIDR
Sbjct: 499 YMAA---MGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D ++L +WA
Sbjct: 556 KKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKR 615
Query: 604 GIQSLAPSDCSMK 616
G + C K
Sbjct: 616 GFEGSFEELCRNK 628
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/518 (45%), Positives = 320/518 (61%), Gaps = 19/518 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G +++ P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616
DS + LV IV D + + WA +GI+ C K
Sbjct: 591 DSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKSK 628
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/518 (45%), Positives = 316/518 (61%), Gaps = 19/518 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ +G++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP ++ YI+N A + V P LL + E P ++L++++ +D +
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + GR N PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY + C GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWT----CKGEGEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616
DS + LV IV D + + +WA +GI+ C K
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKKGIEGTYQELCMKK 628
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/518 (46%), Positives = 318/518 (61%), Gaps = 19/518 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H + IG++ NRPEW+IV+ AC YS + VPL
Sbjct: 118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP A++YI+N A + V PQ LL + E P ++LI+++ ++ +
Sbjct: 178 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N Q PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L PT+F VPRL NR+Y I S T L+ L A K+ + SG +N S +WD
Sbjct: 358 LCPTIFPVVPRLLNRMYDKIFSQANTP--LKRWLLEFAAKRKQAEVRSGIIRNDS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVDV E+NY + C GEICVRGP +FKGY KD +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDVEELNYWA----CKGEGEICVRGPNVFKGYLKDPDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616
DS + LV IV D + + +WA GI+ C+ K
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKRGIEGTYADLCTNK 628
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/555 (42%), Positives = 333/555 (60%), Gaps = 25/555 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R Y+W++Y E +GSGLI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNNGPCLGSR----KPNQPYEWISYKEVAELAECIGSGLIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IGL+ NRPEW+IV+ C +YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ + GV+I++ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPS--DVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N+I +G T+ F S DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS L+ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--LKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P +KLVDV E
Sbjct: 440 SATVLTFLRTALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYVKLVDVEE 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYLASKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+A+V D ++L +WA
Sbjct: 555 DRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQ 614
Query: 602 SEGIQSLAPSDCSMK 616
G+Q C K
Sbjct: 615 KRGLQGSFEELCRNK 629
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/551 (41%), Positives = 330/551 (59%), Gaps = 21/551 (3%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
++ T ++ F R + + LG+R + D Y+W++Y + +GS LI G
Sbjct: 88 DVTTLYEGFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVAELSECIGSALIQKGFK 143
Query: 137 KG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VP 193
IG++ NRPEW+I++ C AYS + VPLYDTLG +A+ YIVN A + VF P
Sbjct: 144 TAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKP 203
Query: 194 QTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ LL + +P +++IVV+ ++ GV++ + + GR+N +
Sbjct: 204 EKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPK 263
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY----PSDVYISYLPLA 307
PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+ P D IS+LPLA
Sbjct: 264 PPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLPLA 323
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H++ER + + + G +GF+QGD LMDD+ L+PTVF VPRL NR++ I T
Sbjct: 324 HMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQANT 383
Query: 368 SGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
+ L+ L + A K+ + SG +N S +WDRL+F+K++ LGGRVR M +GA+P+S
Sbjct: 384 T--LKRWLLDFASKRKEAELRSGIIRNNS-LWDRLIFHKVQSSLGGRVRLMVTGAAPVSA 440
Query: 426 DVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYT 485
VL FL+ G + EGYG TE + GD +GHVG+P IKLVDV EMNY
Sbjct: 441 TVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYM 500
Query: 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
+ + GE+CV+GP +F+GY KD +T E +D+DGW HTGDIG W+P G LKIIDRKK
Sbjct: 501 AAEG---EGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKK 557
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGI 605
+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D + L +WA G
Sbjct: 558 HIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF 617
Query: 606 QSLAPSDCSMK 616
+ C K
Sbjct: 618 EGSFEELCRNK 628
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/555 (41%), Positives = 328/555 (59%), Gaps = 25/555 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + D LG+R Y+W++Y + +GS LI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNDGPCLGSR----KPNQPYEWISYKQVAEMAECIGSALIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+ ++ C YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ D+ + GV+I+ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYDNDLVERGQKCGVEIIGLKALEDLGRVNRTK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N++ +G T+ P DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMVTHQNIMNDCSGFIKATESAFIASPEDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--VKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P IKLVDV +
Sbjct: 440 SATVLTFLRAALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYIKLVDVED 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYQAAKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D + L +WA
Sbjct: 555 DRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQ 614
Query: 602 SEGIQSLAPSDCSMK 616
G Q C K
Sbjct: 615 KRGFQGSFEELCRNK 629
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| 255552335 | 694 | Acyl-CoA synthetase [Ricinus communis] g | 0.982 | 0.873 | 0.833 | 0.0 | |
| 225432604 | 697 | PREDICTED: long chain acyl-CoA synthetas | 0.977 | 0.865 | 0.839 | 0.0 | |
| 356534226 | 696 | PREDICTED: long chain acyl-CoA synthetas | 0.980 | 0.869 | 0.826 | 0.0 | |
| 356574400 | 698 | PREDICTED: long chain acyl-CoA synthetas | 0.980 | 0.866 | 0.825 | 0.0 | |
| 224111218 | 705 | predicted protein [Populus trichocarpa] | 0.970 | 0.849 | 0.816 | 0.0 | |
| 449432710 | 695 | PREDICTED: long chain acyl-CoA synthetas | 0.982 | 0.871 | 0.803 | 0.0 | |
| 357444293 | 697 | Annotation was added to scaffolds in Nov | 0.980 | 0.868 | 0.825 | 0.0 | |
| 357444291 | 713 | Annotation was added to scaffolds in Nov | 0.980 | 0.848 | 0.804 | 0.0 | |
| 147863228 | 703 | hypothetical protein VITISV_002313 [Viti | 0.980 | 0.860 | 0.767 | 0.0 | |
| 296088349 | 633 | unnamed protein product [Vitis vinifera] | 0.980 | 0.955 | 0.767 | 0.0 |
| >gi|255552335|ref|XP_002517212.1| Acyl-CoA synthetase [Ricinus communis] gi|83320525|gb|ABC02881.1| ACS2 [Ricinus communis] gi|223543847|gb|EEF45375.1| Acyl-CoA synthetase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/606 (83%), Positives = 566/606 (93%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MD +AQRR++AIHGHLL A D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVYR
Sbjct: 1 MDMDSAQRRIQAIHGHLLAARDCSPSHLRLNPTAGEFFSEQGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPL+LVSRFPDHP+IGT HDNF R+VDTFRDYKYLGTR+RVDGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLRLVSRFPDHPDIGTLHDNFARSVDTFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL++HGI KGS +GLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK+I
Sbjct: 121 TARTAIGSGLMHHGIPKGSSVGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKFI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FCVPQTL LLS LSE+ +VRLIVV+GG+DDQ+PSLP +TGVQ++TYS LL
Sbjct: 181 VNHADVQAIFCVPQTLTPLLSFLSEISSVRLIVVVGGMDDQMPSLPSSTGVQVVTYSKLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG SNLQPF PPKP+DVATICYTSGTTGTPKGA L+HGNLIA+VAGATL TKFYPSD+Y
Sbjct: 241 SQGHSNLQPFCPPKPEDVATICYTSGTTGTPKGAALTHGNLIANVAGATLATKFYPSDIY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+TVY GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVLTVYYGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
IT+AV+TSGGLRERLFNAAYNAKKQA+L+G++PSPMWDRLVF+KIK KLGGRVRF+ SGA
Sbjct: 361 ITNAVKTSGGLRERLFNAAYNAKKQAILNGRSPSPMWDRLVFDKIKAKLGGRVRFIASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV++FLKICFGGRV+EGYGMTETSC+IS ++EGDNL+GHVGSPN ACEIKLVDVP
Sbjct: 421 SPLSPDVMEFLKICFGGRVSEGYGMTETSCVISAMEEGDNLTGHVGSPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EM+YTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG+W+P GRLKI
Sbjct: 481 EMSYTSDDQPYPRGEICVRGPIVFQGYHKDEAQTRDVIDEDGWLHTGDIGLWLPEGRLKI 540
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKC+F+ QCFVYGDS NSALVAIV+VDQD LKAWA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCRFIAQCFVYGDSLNSALVAIVAVDQDTLKAWA 600
Query: 601 ASEGIQ 606
ASEGI+
Sbjct: 601 ASEGIK 606
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432604|ref|XP_002277936.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera] gi|297737021|emb|CBI26222.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/605 (83%), Positives = 561/605 (92%), Gaps = 2/605 (0%)
Query: 4 TAAQRRLKAIHGHLLCA--DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRS 61
+A QRRL AI L+ DD S SQL N TAGE+ EQGYSVVLPEKL+TGKWNVYRS
Sbjct: 3 SAPQRRLTAIQTQLIATAGDDRSHSQLLTNQTAGEFVSEQGYSVVLPEKLETGKWNVYRS 62
Query: 62 SRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGT 121
++SPL+LVSRFPDHPEIGT HDNFV +V+TFRDYKYLGTR+RVDGTVGEYKWMTYGEAGT
Sbjct: 63 AQSPLRLVSRFPDHPEIGTLHDNFVHSVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGT 122
Query: 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181
AR+ +GSGLIY+GI KGSC+GLYF+NRPEWLIVDHACSA+S++SVPLYDTLGPDAVKYIV
Sbjct: 123 ARSAIGSGLIYYGIPKGSCVGLYFINRPEWLIVDHACSAFSYVSVPLYDTLGPDAVKYIV 182
Query: 182 NHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
NHA +QA+FCVPQTLNSLLS LSE+P+VRLIVV+GGIDDQ+PSLP TTGV++++YS LL+
Sbjct: 183 NHAVLQAIFCVPQTLNSLLSFLSEIPSVRLIVVVGGIDDQMPSLPSTTGVEVVSYSKLLN 242
Query: 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYI 301
QGRS QPF PPKPDDVATICYTSGTTGTPKGAVLSHGNLIA+VAGATL KFYPSDVYI
Sbjct: 243 QGRSRPQPFCPPKPDDVATICYTSGTTGTPKGAVLSHGNLIANVAGATLSVKFYPSDVYI 302
Query: 302 SYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGI 361
SYLPLAHIYERANQVMT Y GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAGI
Sbjct: 303 SYLPLAHIYERANQVMTAYFGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAGI 362
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
T+AV+TSG LRERLFNAAYNAKK+A+LSGKNPSPMWDRLVFNKIK+KLGGRVRFM SGAS
Sbjct: 363 TNAVKTSGVLRERLFNAAYNAKKRAILSGKNPSPMWDRLVFNKIKEKLGGRVRFMVSGAS 422
Query: 422 PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
PLSPDV++FL+ICFGGR+TEGYGMTETSC+IS +DE DNL+GHVGSPN ACE+KLVDVPE
Sbjct: 423 PLSPDVMEFLRICFGGRITEGYGMTETSCVISSMDESDNLTGHVGSPNPACEVKLVDVPE 482
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNYTSEDQP PRGEICVRGP++F GY+KDE+QT+EVIDEDGW HTGDIG+W+PGGRLKII
Sbjct: 483 MNYTSEDQPYPRGEICVRGPILFLGYHKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 542
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS NS+LVAIVSVD D LKAWAA
Sbjct: 543 DRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSMNSSLVAIVSVDPDVLKAWAA 602
Query: 602 SEGIQ 606
SEGIQ
Sbjct: 603 SEGIQ 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534226|ref|XP_003535658.1| PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/606 (82%), Positives = 556/606 (91%), Gaps = 1/606 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVY 59
MD T AAQRRLKAIH HL D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVY
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATADESPSHLRSNPTAGEFFSEQGYSVVLPEKLQTGKWNVY 60
Query: 60 RSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKW+TYGEA
Sbjct: 61 RSVRSPLQLVTKFPNHPEIGTLHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWITYGEA 120
Query: 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY 179
GTAR+ +GSGLIYHGI KGS IGLYF+NRPEWLIVDHACS+YSF+SVPLYDTLGPDAVKY
Sbjct: 121 GTARSAIGSGLIYHGIEKGSSIGLYFINRPEWLIVDHACSSYSFVSVPLYDTLGPDAVKY 180
Query: 180 IVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
IV+HA+VQ +FCVPQTLN LLS LS++PTVRLIVV+GG+DDQIP +P +TGVQ++TYS L
Sbjct: 181 IVSHAAVQVIFCVPQTLNLLLSYLSDIPTVRLIVVVGGMDDQIPLVPSSTGVQVITYSKL 240
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L+QGRSNLQ F PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T KF PSDV
Sbjct: 241 LNQGRSNLQLFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTRDQKFGPSDV 300
Query: 300 YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359
YISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRIYA
Sbjct: 301 YISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRIYA 360
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG 419
GI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM SG
Sbjct: 361 GIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMASG 420
Query: 420 ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDV 479
ASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLVDV
Sbjct: 421 ASPLSPDIMEFLKICFGCRVTEGYGMTESTCIISFIDEGDKLGGHVGSPNLACEIKLVDV 480
Query: 480 PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
PEMNYTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG W+PGGRLK
Sbjct: 481 PEMNYTSDDQPNPRGEICVRGPIVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGRLK 540
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599
IIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS NS+LVA+VSVD D LKAW
Sbjct: 541 IIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVSVDHDNLKAW 600
Query: 600 AASEGI 605
AASEGI
Sbjct: 601 AASEGI 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574400|ref|XP_003555336.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/608 (82%), Positives = 557/608 (91%), Gaps = 3/608 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCAD--DSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWN 57
MD T AAQRRLKAIH HL D S S L N TAGE+ EQGYSVVLPEKL TGKWN
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATATADDSPSHLESNTTAGEFFSEQGYSVVLPEKLQTGKWN 60
Query: 58 VYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 117
VYRS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKWMTYG
Sbjct: 61 VYRSVRSPLQLVTKFPNHPEIGTMHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 120
Query: 118 EAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
EAGTAR+ +GSGLIY+GI KGS IGLYF+NRPEWLIVDHACSAYSF+SVPLYDTLGPDAV
Sbjct: 121 EAGTARSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVSVPLYDTLGPDAV 180
Query: 178 KYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237
KYIV+HA VQ +FCVP+TLN LLS LS++PTVRLIVV+GG+DDQIPS+P +TGVQ++TYS
Sbjct: 181 KYIVSHAVVQVIFCVPETLNLLLSYLSDIPTVRLIVVVGGMDDQIPSVPSSTGVQVITYS 240
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
LL+QGRSNLQPF PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T+ KF PS
Sbjct: 241 KLLNQGRSNLQPFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTMDEKFGPS 300
Query: 298 DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRI 357
DVYISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRI
Sbjct: 301 DVYISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRI 360
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
YAGIT+AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM
Sbjct: 361 YAGITNAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMA 420
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLV 477
SGASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLV
Sbjct: 421 SGASPLSPDIMEFLKICFGCRVTEGYGMTESTCVISCIDEGDKLGGHVGSPNLACEIKLV 480
Query: 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537
DVPEMNYTS+DQP PRGEICVRGPL+F+GY+KDE QT++VIDEDGW HTGDIG W+PGGR
Sbjct: 481 DVPEMNYTSDDQPNPRGEICVRGPLVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGR 540
Query: 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK 597
LKIIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS N++LVA+VSVD D LK
Sbjct: 541 LKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNASLVAVVSVDHDNLK 600
Query: 598 AWAASEGI 605
AWAASEGI
Sbjct: 601 AWAASEGI 608
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111218|ref|XP_002315784.1| predicted protein [Populus trichocarpa] gi|222864824|gb|EEF01955.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/601 (81%), Positives = 553/601 (92%), Gaps = 2/601 (0%)
Query: 6 AQRRLKAIHGHLL--CADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSR 63
AQRR+KAIH HL+ A D S QLRHNPTAGE+ EQGYSVVLPEKL TGKWNVYRS+R
Sbjct: 11 AQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSAR 70
Query: 64 SPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTAR 123
+PLKLVSRFPDHPEIGT HDNF R+V+TFRDYKYLGTR+RVDGTVG+YKWMT+GEAGTAR
Sbjct: 71 TPLKLVSRFPDHPEIGTLHDNFARSVETFRDYKYLGTRIRVDGTVGDYKWMTFGEAGTAR 130
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
TE+GSGLIYHGI KGS IG+YF+NRPEW+IVDHACSAYS+ISVPLYDTLGPDAVKYIVNH
Sbjct: 131 TEIGSGLIYHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLGPDAVKYIVNH 190
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
A V A+FCVPQTLN LLS LSE+P+ RLIVV+GGIDDQ+PSLP +TGVQ++TYS LLSQG
Sbjct: 191 AVVHAIFCVPQTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQVVTYSKLLSQG 250
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
RS+LQPF PPKP+D+ATICYTSGTTGTPKG VL+HGN IASVAG +L T + SD++ISY
Sbjct: 251 RSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTSYSTSDIFISY 310
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITS 363
LPLAHIYER NQVMTVY GVAVGFYQGDNMKLMDDMAALRPT+FCSVPRLYNRIYAGI +
Sbjct: 311 LPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRLYNRIYAGIMN 370
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
AV+ SGGLRERLFNAAYNAKKQA+L+GKNPSPMWDRLVFNKIKD+LGGRVR + SGASPL
Sbjct: 371 AVKASGGLRERLFNAAYNAKKQALLNGKNPSPMWDRLVFNKIKDRLGGRVRLIVSGASPL 430
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
SPDVL+FL+ICFGGR+ EGYGMTET+ IS +DEGD+L+GHVGSP+ +CE+KLVDVPEMN
Sbjct: 431 SPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDSLNGHVGSPSPSCEVKLVDVPEMN 490
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
YTS+D+P PRGEIC+RGP++F+GYYKDE QT+EVI+EDGWFH+GDIG+W+PGGRLKIIDR
Sbjct: 491 YTSDDKPYPRGEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDIGLWLPGGRLKIIDR 550
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KKNIFKLAQGEYIA EKIENVYAKCKF+ QCFVYGDS NS+LVA+VSVD D LKAWAASE
Sbjct: 551 KKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSLNSSLVAVVSVDHDVLKAWAASE 610
Query: 604 G 604
G
Sbjct: 611 G 611
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432710|ref|XP_004134142.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/606 (80%), Positives = 550/606 (90%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MDS+AA+RR++AI HL+ A + SSSQL+ N TAGE+ GYSVVLPEKL TGKWNVYR
Sbjct: 1 MDSSAARRRIQAIQDHLVPASEFSSSQLQLNATAGEFFSGDGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPLKLV RFPDHPEIGT HDNF R+ D +RDYKYLGTR+R DGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLKLVDRFPDHPEIGTLHDNFTRSTDVYRDYKYLGTRIRCDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL+ HGI KGSCIGLYF+NRPEWL+VDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 121 TARTALGSGLVNHGIPKGSCIGLYFINRPEWLVVDHACSAYSYISVPLYDTLGPDAVKYI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQ +FCVPQTLNSLLS LSE+PTVRLIVV+GG+DDQIPSLP +TGVQ+LTY++LL
Sbjct: 181 VNHALVQVIFCVPQTLNSLLSFLSEIPTVRLIVVVGGVDDQIPSLPSSTGVQVLTYASLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG +N+QPF PPK DD+ATICYTSGTTGTPKGAVL+HGNLIASVAG +L KF+PSDVY
Sbjct: 241 SQGSTNIQPFCPPKSDDIATICYTSGTTGTPKGAVLTHGNLIASVAGCSLALKFFPSDVY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV TVY GVAVGFYQGDNMKLMDDM ALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVSTVYFGVAVGFYQGDNMKLMDDMIALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG L+ERLFNAAYN+K+QA+++GK+PSP+WD+LVFNKIK KLGGRVR + SGA
Sbjct: 361 IINAVKTSGVLKERLFNAAYNSKRQAIMNGKSPSPLWDKLVFNKIKAKLGGRVRVLASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPD+L+FLKICFGG V EGYGMTETSC+IS +D D L GHVG+PN ACEIKLVDVP
Sbjct: 421 SPLSPDILEFLKICFGGVVFEGYGMTETSCVISAMDPDDTLCGHVGAPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTS+DQP RGEICVRGPL+FKGY+KDE+QT+E +DEDGW HTGDIG+W+ GGRLKI
Sbjct: 481 EMNYTSDDQPYSRGEICVRGPLVFKGYFKDEVQTREAVDEDGWLHTGDIGLWMQGGRLKI 540
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDSFN++LVA+VSVD + LKAWA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSFNASLVAVVSVDVETLKAWA 600
Query: 601 ASEGIQ 606
+SEGI+
Sbjct: 601 SSEGIK 606
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444293|ref|XP_003592424.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481472|gb|AES62675.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/607 (82%), Positives = 554/607 (91%), Gaps = 2/607 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598
KIIDRKKNIFKLAQGEYIA EKIENVY KC FV QCF+YGDSFNS+LV++VSVD D +KA
Sbjct: 541 KIIDRKKNIFKLAQGEYIAPEKIENVYVKCNFVAQCFIYGDSFNSSLVSVVSVDPDVMKA 600
Query: 599 WAASEGI 605
WAAS+ I
Sbjct: 601 WAASQNI 607
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444291|ref|XP_003592423.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481471|gb|AES62674.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/623 (80%), Positives = 554/623 (88%), Gaps = 18/623 (2%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG----------------DSFN 582
KIIDRKKNIFKLAQGEYIA EKIENVY KC FV QCF+YG DSFN
Sbjct: 541 KIIDRKKNIFKLAQGEYIAPEKIENVYVKCNFVAQCFIYGKERNSAYIFSVCVFRRDSFN 600
Query: 583 SALVAIVSVDQDALKAWAASEGI 605
S+LV++VSVD D +KAWAAS+ I
Sbjct: 601 SSLVSVVSVDPDVMKAWAASQNI 623
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147863228|emb|CAN82622.1| hypothetical protein VITISV_002313 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/606 (76%), Positives = 537/606 (88%), Gaps = 1/606 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
M+STA QRRLKAI GHL+ S ++ + TA E+ QGYSVVLPEKL+TGKWNVYR
Sbjct: 1 MESTA-QRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHTQGYSVVLPEKLNTGKWNVYR 59
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S RSPLKL+SR P+HPEIGT HDNF+ A++ F+DY YLGTRVR DGTVGEYKWMTYGEAG
Sbjct: 60 SVRSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAG 119
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
T R +GSGL +HG+ +G+CIGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 120 TVRLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYI 179
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FC+P TLN+LLS LSE+P+VRL+VV+GGID+ +PSLP + V++++++ LL
Sbjct: 180 VNHADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLL 239
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG S+LQPF PPKP+D+ATICYTSGTTGTPKG +L+HGNLIA++AGA+L KF PSD+Y
Sbjct: 240 SQGHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIY 299
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+ Y G AVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY+G
Sbjct: 300 ISYLPLAHIYERANQVLLPYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSG 359
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG LR+ LFNAAYN+KKQ ++SG+NPSPMWDRLVF+KIK LGGRV FMGSGA
Sbjct: 360 IMNAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGA 419
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV+DFL++CFG +V EGYGMTETSCLIS +D+GDNLSGHVGSPN ACEIKLVDVP
Sbjct: 420 SPLSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVP 479
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTSEDQP PRGEICVRGP++F+GYYKDE+QTKEVID DGW HTGDIG+W+PGGRLKI
Sbjct: 480 EMNYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKI 539
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF+YGDS NS LVAIVSVD D LK WA
Sbjct: 540 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWA 599
Query: 601 ASEGIQ 606
SE I+
Sbjct: 600 TSEAIK 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088349|emb|CBI36794.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/606 (76%), Positives = 537/606 (88%), Gaps = 1/606 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
M+STA QRRLKAI GHL+ S ++ + TA E+ QGYSVVLPEKL+TGKWNVYR
Sbjct: 1 MESTA-QRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHSQGYSVVLPEKLNTGKWNVYR 59
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S RSPLKL+SR P+HPEIGT HDNF+ A++ F+DY YLGTRVR DGTVGEYKWMTYGEAG
Sbjct: 60 SVRSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAG 119
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
T R +GSGL +HG+ +G+CIGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 120 TVRLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYI 179
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FC+P TLN+LLS LSE+P+VRL+VV+GGID+ +PSLP + V++++++ LL
Sbjct: 180 VNHADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLL 239
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG S+LQPF PPKP+D+ATICYTSGTTGTPKG +L+HGNLIA++AGA+L KF PSD+Y
Sbjct: 240 SQGHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIY 299
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+ Y G AVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY+G
Sbjct: 300 ISYLPLAHIYERANQVLLAYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSG 359
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG LR+ LFNAAYN+KKQ ++SG+NPSPMWDRLVF+KIK LGGRV FMGSGA
Sbjct: 360 IMNAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGA 419
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV+DFL++CFG +V EGYGMTETSCLIS +D+GDNLSGHVGSPN ACEIKLVDVP
Sbjct: 420 SPLSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVP 479
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTSEDQP PRGEICVRGP++F+GYYKDE+QTKEVID DGW HTGDIG+W+PGGRLKI
Sbjct: 480 EMNYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKI 539
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF+YGDS NS LVAIVSVD D LK WA
Sbjct: 540 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWA 599
Query: 601 ASEGIQ 606
SE I+
Sbjct: 600 TSEAIK 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.977 | 0.860 | 0.796 | 8e-275 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.972 | 0.857 | 0.743 | 3.4e-258 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.878 | 0.812 | 0.424 | 2.6e-118 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.800 | 0.723 | 0.466 | 1.3e-115 | |
| ZFIN|ZDB-GENE-040801-88 | 729 | zgc:101071 "zgc:101071" [Danio | 0.811 | 0.687 | 0.444 | 1.3e-114 | |
| UNIPROTKB|Q1LZF6 | 683 | ACSL5 "Acyl-CoA synthetase lon | 0.813 | 0.734 | 0.439 | 6.1e-114 | |
| ZFIN|ZDB-GENE-040912-169 | 681 | acsl5 "acyl-CoA synthetase lon | 0.805 | 0.729 | 0.457 | 3.2e-113 | |
| RGD|69403 | 697 | Acsl6 "acyl-CoA synthetase lon | 0.808 | 0.715 | 0.459 | 5.2e-113 | |
| UNIPROTKB|E2QUL3 | 698 | ACSL1 "Uncharacterized protein | 0.880 | 0.777 | 0.426 | 1.4e-112 | |
| UNIPROTKB|G3V1S9 | 606 | ACSL6 "Acyl-CoA synthetase lon | 0.808 | 0.823 | 0.461 | 1.4e-112 |
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2642 (935.1 bits), Expect = 8.0e-275, P = 8.0e-275
Identities = 481/604 (79%), Positives = 552/604 (91%)
Query: 3 STAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSS 62
S AA+RR+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS+
Sbjct: 9 SAAARRRINAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSA 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
+SP KLVSRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTA
Sbjct: 68 KSPFKLVSRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTA 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
RT +GSGL++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVN
Sbjct: 128 RTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA+VQA+FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+Q
Sbjct: 188 HATVQAIFCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRSN Q F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYIS
Sbjct: 248 GRSNPQRFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI
Sbjct: 308 YLPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGII 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+AV+TSGGL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASP
Sbjct: 368 NAVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSP+V++FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS DQP PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
RKKNIFKLAQGEYIA EKIENVYAKCKFVGQCF+YGDSFNS+LVA+VSVD D LK+WAAS
Sbjct: 548 RKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAAS 607
Query: 603 EGIQ 606
EGI+
Sbjct: 608 EGIK 611
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2485 (879.8 bits), Expect = 3.4e-258, P = 3.4e-258
Identities = 449/604 (74%), Positives = 527/604 (87%)
Query: 7 QRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNVYRSS 62
QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNVYRS
Sbjct: 8 QRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVYRSK 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGEA +
Sbjct: 68 RSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASE 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK++VN
Sbjct: 128 RQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y LLSQ
Sbjct: 188 HANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSDVYIS
Sbjct: 248 GRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY GIT
Sbjct: 308 YLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGIT 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
SAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGSGASP
Sbjct: 368 SAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
RKKNIFKLAQGEYIA EKIENVY KC+FV QCF++GDSFNS+LVAIVSVD + +K WAAS
Sbjct: 548 RKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAAS 607
Query: 603 EGIQ 606
EGI+
Sbjct: 608 EGIK 611
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 235/553 (42%), Positives = 340/553 (61%)
Query: 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR-VRVDGTVGEYK 112
G+ R+++ P KL + PD T +D V ++ D +LG R + DG G+YK
Sbjct: 32 GETRPRRNTKFP-KLTNS-PDGKTF-TLYD--VYRINKDSDSNFLGIRELLADGKRGDYK 86
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
W++Y +A +GS L+ G++KG IG++ +NRPEW++ D A +S + V LY TL
Sbjct: 87 WISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATL 146
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ-IPSLPITTGV 231
G +A++Y+VNH+ + + C + + +LS T++ IV + + V
Sbjct: 147 GANAIEYVVNHSEISVLLCEGKNVEKILSMPGT--TIKTIVSYDPLPQATLDKFKDNENV 204
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
++ S+ G N P P+D+ T+ YTSG+TG PKG +L+H N+++ VAGA
Sbjct: 205 KLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS 264
Query: 292 TK-FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
P DV++SYLPLAH +ERA + Y G +GF+ G +L +D+ LRPT C
Sbjct: 265 PAGVIPEDVHMSYLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGA 324
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR++ R++ + V L++ LFN N+K+ A+ G +P+WD+LVF+K KD+LG
Sbjct: 325 PRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSKQSALRLGST-TPIWDKLVFSKTKDRLG 383
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
GRV+F+ SG++PL P + +FL+ CF V GYG++E S DN GHVG P +
Sbjct: 384 GRVKFILSGSAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDNNVGHVGPPLS 443
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
ACE+KL+DVPEMNY S D+PCPRGE+C+RG +FKGY+KD +TKE + EDGWFHTGDIG
Sbjct: 444 ACEMKLIDVPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIG 503
Query: 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVS 590
W G L IIDRKKNIFKL+QGEY+AAE +E+V+ + F Q FVYGDS NS LV +V
Sbjct: 504 RWNENGTLSIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVV 563
Query: 591 VDQDALKAWAASE 603
D + ++ AS+
Sbjct: 564 PDFEVVQKLFASK 576
|
|
| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 1.3e-115, Sum P(2) = 1.3e-115
Identities = 241/517 (46%), Positives = 318/517 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+TY + +GSGL+ G S IG++ NRPEW+I ++AC YS ++VPL
Sbjct: 103 YQWLTYKQVLDRAQHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLL-SC-LSEVPTVRLIVVIGGIDDQIPSL 225
YDTLGPDA+ YIVN A + V C P+ LL +C + P ++ I+++ D ++
Sbjct: 163 YDTLGPDAILYIVNKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL GR+N++ PP P+D+ +C+TSGTTG PKGA+L+H N++A+
Sbjct: 223 GAKVGVEILALQEAEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENVVANA 282
Query: 286 AGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
A A L T + SDV ISYLPLAH++ER Q + G VGF+QGD L DDM
Sbjct: 283 A-AFLRTIEDTVECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMK 341
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWD 398
L+PT+F VPRL NRIY I S T +++ L N A K + G +N S + D
Sbjct: 342 TLKPTIFPVVPRLLNRIYDKIQSGANTP--MKKFLLNFAATMKMIEVKQGIIRNDS-LLD 398
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLD 456
+LVF K+++ +GGRVR M +GA+P+SP VL FL+ G +V E YG TE S C S
Sbjct: 399 KLVFKKVQETMGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSM-- 456
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD +GHVG P IKL DV EMNY S + GE+C++GP +FKGY KD +T E
Sbjct: 457 PGDWTTGHVGPPLVCNIIKLDDVEEMNYFSSNN---EGEVCIKGPNVFKGYLKDPEKTAE 513
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
ID+DGW HTGD+G W+P G LKIIDRKKNIFKLAQGEYIA EKIENVY + V Q FV
Sbjct: 514 AIDKDGWLHTGDVGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSVAVAQVFV 573
Query: 577 YGDSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDC 613
+G+S S L+ IV D + L +AA GI+ C
Sbjct: 574 HGESLRSCLIGIVVPDAETLPEFAAKLGIKGSYEDIC 610
|
|
| ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 229/515 (44%), Positives = 323/515 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GS ++ G SK IG++ NRPEW I + AC YS ISVPL
Sbjct: 118 YEWLSYSEVIERAEHLGSAFLHKGHSKSGDPYIGIFSQNRPEWTIAELACYTYSLISVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLP 226
YDTLG +A+ YI++ + V C VP+ LL C+S +V+ ++++ +D + S
Sbjct: 178 YDTLGTEAISYILDKTCISTVVCDVPEKAGLLLECVSGRQHSVKTLILMADVDADLQSRA 237
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
G+QI++ ++ + G+++ + PP+PDD+A IC+TSGTTG PKGA+L+H N++++++
Sbjct: 238 QQCGIQIMSLTDAENMGKTHRRQPEPPQPDDLAVICFTSGTTGNPKGAMLTHRNIVSNIS 297
Query: 287 G---ATLGTKFYPS-DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL 342
T T S D +ISYLPLAH++ER Q + + G +G++QGD LMDD+ AL
Sbjct: 298 AFIHVTNSTCPLSSRDSHISYLPLAHMFERVVQGVVLLHGARIGYFQGDIRVLMDDLIAL 357
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-KNPSPMWDRLV 401
+PT+F VPRL NR++ I T L+ RL A+ K+ M SG +WD+++
Sbjct: 358 KPTIFPVVPRLLNRMFDKIYGQANTP--LKRRLLEFAFRRKEAEMKSGIMRRDSIWDKII 415
Query: 402 FNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNL 461
F K++ +GG VR M +GA+P+S VL FL+ G + EGYG TE + + GD
Sbjct: 416 FKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLPGDWT 475
Query: 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521
+GHVG+P +IKLVDV EMNY + + GE+CVRGP FKGY KD +TKE +DE+
Sbjct: 476 AGHVGAPLPCNDIKLVDVAEMNYYAANG---EGEVCVRGPNAFKGYLKDPEKTKEALDEE 532
Query: 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF 581
GW HTGDIG W+P G LKI+DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+GDS
Sbjct: 533 GWVHTGDIGRWLPNGSLKIVDRKKHIFKLAQGEYIAPEKIENIYIRSEAVVQAFVHGDSL 592
Query: 582 NSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616
+ LVAI+ D D L WA GI+ C K
Sbjct: 593 QACLVAIIVPDPDFLPGWAKKRGIEGTYEDLCKNK 627
|
|
| UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 227/517 (43%), Positives = 326/517 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y + +GS L++ G S+ S +G++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YRWLSYKQVSDRAEYLGSCLLHKGYKPSQESFVGIFAQNRPEWVISEFACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSL 225
YDTLG +AV YI+N A + V C PQ L+S + + P ++L++++ +D +
Sbjct: 163 YDTLGAEAVIYIINKADIAMVICDTPQKALVLISNVEKGLTPGLKLVILMDPFEDDLKKR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL+ + + G+ N + PP P+D++ IC+TSGTTG PKGA+L+H N++++
Sbjct: 223 GEKCGVEILSLFDAENLGKENFRKPVPPAPEDLSIICFTSGTTGDPKGAMLTHANIVSNA 282
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G + F P+ DV ISYLPLAH++ER QV+ G VGF+QGD L DDM
Sbjct: 283 SGFLKCMEGVFEPNPEDVCISYLPLAHMFERIVQVIVFSYGAKVGFFQGDIRLLPDDMRT 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK-NPSPMWDRL 400
L+PT+F +VPRL N++Y + + +T L++ L N A +K + + G +WD+L
Sbjct: 343 LKPTLFPTVPRLLNKVYDKVQNEAKTP--LKKFLLNLAVASKFREVKRGIIRRDSLWDKL 400
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460
+F KI++ LGG+VR + +GA+P+SP VL FL+ G V E YG TE + + GD
Sbjct: 401 IFGKIQESLGGKVRLLITGAAPISPPVLTFLRAALGCLVFEAYGQTECTAGCTVTLPGDW 460
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
SGHVG P A +KL DVP+MNY + + GEIC+RG +FKGY K+ +T+E +D+
Sbjct: 461 KSGHVGVPMACNHVKLEDVPDMNYFAVNN---EGEICIRGHNVFKGYLKEPEKTQETLDK 517
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
DGW HTGDIG W+P G LK+IDRKKNIFKLAQGEYIA EKIE VY + V Q FV+G+S
Sbjct: 518 DGWLHTGDIGRWLPNGTLKVIDRKKNIFKLAQGEYIAPEKIETVYIRSSLVSQIFVHGES 577
Query: 581 FNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMKT 617
S LV +V D DAL +AA G++ C +T
Sbjct: 578 LQSFLVGVVVPDPDALPPFAAKIGVKGSIEELCQNQT 614
|
|
| ZFIN|ZDB-GENE-040912-169 acsl5 "acyl-CoA synthetase long-chain family member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 235/514 (45%), Positives = 323/514 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+ Y + +GSGLI+ G S+ + IG++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YQWLKYKQVSDRAEFLGSGLIHRGQKPSQDTFIGIFAQNRPEWIIAELACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE---VPTVRLIVVIGGIDDQIPSL 225
YDTLGP+A+ +I+N A++ V C + L SE P ++ I+++ D +
Sbjct: 163 YDTLGPEALVFIINRANISTVICDKKDKAETLLDNSEKKLTPLLKTIILMDSYDSALTER 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV +L+ ++ + G++N PPKP+D++ IC+TSGTTG PKGA+L+H N++A
Sbjct: 223 GSKIGVDVLSLKDVEALGKNNHHRPVPPKPEDLSIICFTSGTTGDPKGAMLTHENVVADA 282
Query: 286 AGA--TLGTKFYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
AG T + F P SDV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 283 AGVVRTFESVFVPVPSDVSISFLPLAHMFERVVQTVLYGVGGRVGFFQGDIRLLPDDMKA 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L+PTVF VPRL NR+Y + S +T ++ L N A K + G +N S MWD+
Sbjct: 343 LQPTVFPVVPRLLNRVYDKVQSGAKTP--FKKWLLNFAIEKKCAEVKQGIIRNDS-MWDK 399
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L+F+K+++ LGGRVR M +GA+P+SP VL FL+ C G ++ E YG TE + S GD
Sbjct: 400 LIFHKVQESLGGRVRVMVTGAAPISPSVLTFLRACLGCQIFEAYGQTECTAACSFTIPGD 459
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519
+GHVG+P IKLVDV EM+Y + + GEICV+G +F+GY D +T E +D
Sbjct: 460 WKTGHVGAPIPCNTIKLVDVEEMDYFASNG---EGEICVKGTNVFRGYLGDPEKTAEALD 516
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579
+DGW HTGDIG W+P G LKIIDRKKNIFKLAQGEYIA EKIENVY + V Q FV+G+
Sbjct: 517 KDGWLHTGDIGKWLPSGVLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSAPVAQVFVHGE 576
Query: 580 SFNSALVAIVSVDQDALKAWAASEGIQSLAPSDC 613
S S+LVAIV D + L +A G++ C
Sbjct: 577 SLQSSLVAIVVPDPEVLPGFAEKLGLKGSLEELC 610
|
|
| RGD|69403 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 238/518 (45%), Positives = 320/518 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ + P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616
DS + LV IV D + + WA +GI+ C K
Sbjct: 591 DSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKSK 628
|
|
| UNIPROTKB|E2QUL3 ACSL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 242/568 (42%), Positives = 341/568 (60%)
Query: 63 RSPLKLVSRFP---DHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RSPL L S P + ++ T ++ F R + D LG+R + D Y+W++Y +
Sbjct: 72 RSPL-LDSDEPLVYFYDDVRTIYEGFQRGIQVSNDGPCLGSR-KPDQP---YEWLSYKQV 126
Query: 120 GTARTEVGSGLIYHGISKG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
VGS LI G IG++ NRPEW+I++ C AYS + VPLYDTLG +A+
Sbjct: 127 AEIAECVGSALIQKGFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVVVPLYDTLGTEAI 186
Query: 178 KYIVNHASVQAVFC-VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
YI+N A + +F P N LL + +P +++IV++ + GV+I+
Sbjct: 187 TYIINKAELSLIFVDKPDKANLLLDGVENKLIPGLKIIVLMDSYGIDLLERGKRCGVEII 246
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK- 293
+ + GR+N Q PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+
Sbjct: 247 SMKAMEDLGRANRQRPKPPAPEDLAVICFTSGTTGNPKGAMITHRNIVSDCSAFVKVTEK 306
Query: 294 ---FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
SD +IS+LPLAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F V
Sbjct: 307 VLALNASDTHISFLPLAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVV 366
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDK 408
PRL NR++ I T+ L+ L + A K+ + SG +N S +WD+L+F+KI+
Sbjct: 367 PRLLNRMFDRIFGQANTT--LKRWLLDFASKRKEAELRSGIIRNNS-LWDKLIFHKIQSS 423
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSP 468
LGG+VR M +GA+P+S VL FL+ G + EGYG TE + GD +GHVGSP
Sbjct: 424 LGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTVPGDWTAGHVGSP 483
Query: 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
IKLVDV EMNY + GE+CV+GP +FKGY KD +T EV+D+DGW HTGD
Sbjct: 484 MPCNLIKLVDVEEMNYLAAKG---EGEVCVKGPNVFKGYLKDPAKTAEVLDKDGWLHTGD 540
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAI 588
IG W+P G LKIIDRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AI
Sbjct: 541 IGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAI 600
Query: 589 VSVDQDALKAWAASEGIQSLAPSDCSMK 616
V D + L WA +G++ C K
Sbjct: 601 VVPDVETLGPWARKKGLEGSFEELCRNK 628
|
|
| UNIPROTKB|G3V1S9 ACSL6 "Acyl-CoA synthetase long-chain family member 6, isoform CRA_c" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 239/518 (46%), Positives = 317/518 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISK--GSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H IG++ NRPEW+IV+ AC YS + VPL
Sbjct: 27 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 86
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP A++YI+N A + V PQ LL + E P ++LI+++ ++ +
Sbjct: 87 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 146
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N Q PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 147 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 206
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 207 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 266
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L PT+F VPRL NR+Y I S T L+ L A K+ + SG +N S +WD
Sbjct: 267 LCPTIFPVVPRLLNRMYDKIFSQANTP--LKRWLLEFAAKRKQAEVRSGIIRNDS-IWDE 323
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 324 LFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 383
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVDV E+NY + C GEICVRGP +FKGY KD +TKE +
Sbjct: 384 WTSGHVGAPLPCNHIKLVDVEELNYWA----CKGEGEICVRGPNVFKGYLKDPDRTKEAL 439
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 440 DSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHG 499
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616
DS + LV IV D + + +WA GI+ C+ K
Sbjct: 500 DSLKAFLVGIVVPDPEVMPSWAQKRGIEGTYADLCTNK 537
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8LKS5 | LACS7_ARATH | 6, ., 2, ., 1, ., 3 | 0.7384 | 0.9789 | 0.8628 | yes | no |
| Q8LPS1 | LACS6_ARATH | 6, ., 2, ., 1, ., 3 | 0.7973 | 0.9659 | 0.8502 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00019949001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (700 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | • | 0.908 | |||||||
| GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | • | 0.907 | |||||||
| GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | ||||||||
| GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | ||||||||
| GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | ||||||||
| GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | ||||||||
| GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | ||||||||
| GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-160 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-158 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-157 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-143 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-133 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-115 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-113 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-100 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-99 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-83 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-68 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-67 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 6e-60 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 8e-60 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-54 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 2e-51 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-50 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-50 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 9e-50 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 6e-43 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-43 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-42 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 4e-41 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-40 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-39 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 5e-38 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 6e-38 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-37 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-36 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-35 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-33 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-33 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-32 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 5e-32 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 6e-32 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-31 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 8e-31 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 1e-30 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-30 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-29 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-28 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-28 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-27 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-27 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-27 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 7e-27 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-26 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-26 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-26 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-26 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 6e-26 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-25 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 2e-25 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-25 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-25 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-24 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 6e-24 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-23 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-23 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 8e-23 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-22 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 1e-22 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-22 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-21 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-20 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-20 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-20 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-20 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-19 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-19 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 2e-19 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-19 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-18 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-18 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 5e-18 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 5e-18 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-17 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-17 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 6e-17 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 7e-17 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-16 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 3e-16 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-16 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 4e-16 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-16 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-15 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 2e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-15 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 3e-15 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-15 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-15 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-14 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-14 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-14 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-14 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 3e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-14 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 8e-14 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-13 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-13 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 7e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 7e-13 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-13 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-12 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-12 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-12 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-11 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-11 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-11 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-11 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 4e-11 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 6e-11 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 6e-11 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 7e-11 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 9e-11 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-10 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 1e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-10 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-10 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-09 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 1e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 6e-09 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 7e-09 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-08 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-08 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-08 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 2e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-08 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-08 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 7e-08 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 9e-08 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-07 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-07 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 4e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 5e-07 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 2e-06 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-06 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-06 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 4e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 4e-06 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 5e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 6e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-06 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 7e-06 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-05 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 5e-05 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 6e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-05 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-04 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-04 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 5e-04 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-04 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.001 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 0.001 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.003 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 1210 bits (3132), Expect = 0.0
Identities = 477/572 (83%), Positives = 533/572 (93%)
Query: 36 EYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDY 95
E+ EQGYSVVLPEKL TGKWNVYRS+RSPLKLVSRFPDHPEIGT HDNFV AV+TFRDY
Sbjct: 1 EFVHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDY 60
Query: 96 KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155
KYLGTR+RVDGTVGEYKWMTYGEAGTART +GSGL+ HGI KG+C+GLYF+NRPEWLIVD
Sbjct: 61 KYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120
Query: 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVI 215
HACSAYS++SVPLYDTLGPDAVK+IVNHA V A+FCVPQTLN+LLSCLSE+P+VRLIVV+
Sbjct: 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVV 180
Query: 216 GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAV 275
GG D+ +PSLP TGV+I+TYS LL+QGRS+ QPF PPKP+DVATICYTSGTTGTPKG V
Sbjct: 181 GGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVV 240
Query: 276 LSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL 335
L+HGNLIA+VAG++L TKFYPSDV+ISYLPLAHIYER NQ++ ++ GVAVGFYQGDN+KL
Sbjct: 241 LTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKL 300
Query: 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395
MDD+AALRPT+FCSVPRLYNRIY GIT+AV+ SGGL+ERLFNAAYNAKKQA+ +GKNPSP
Sbjct: 301 MDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP 360
Query: 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455
MWDRLVFNKIK KLGGRVRFM SGASPLSPDV++FL+ICFGGRV EGYGMTETSC+IS +
Sbjct: 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM 420
Query: 456 DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK 515
DEGDNLSGHVGSPN ACE+KLVDVPEMNYTSEDQP PRGEICVRGP+IFKGYYKDE+QT+
Sbjct: 421 DEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR 480
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCF 575
EVIDEDGW HTGDIG+W+PGGRLKIIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF
Sbjct: 481 EVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCF 540
Query: 576 VYGDSFNSALVAIVSVDQDALKAWAASEGIQS 607
VYGDS NS+LVA+V VD + LKAWAASEGI+
Sbjct: 541 VYGDSLNSSLVAVVVVDPEVLKAWAASEGIKY 572
|
Length = 651 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 704 bits (1819), Expect = 0.0
Identities = 247/500 (49%), Positives = 314/500 (62%), Gaps = 41/500 (8%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G Y+W++Y E +GSGL G+ G IG++ NRPEW+I + AC + S + VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
YDTLG +A++YI+N + VFC
Sbjct: 61 YDTLGEEAIEYILNETEISIVFC------------------------------------- 83
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
V++ ++ L G+ N P +PPKP+D+ATI YTSGTTG PKG +L+HGN++A VAG
Sbjct: 84 DAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143
Query: 289 --TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
+ P+DVYISYLPLAHI+ER + + +Y G +G+Y GD L D+ L+PTV
Sbjct: 144 NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTV 203
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP-SPMWDRLVFNKI 405
F VPR+ +RIY GI + V GGL+ LFN AYN K A+ G SP+WD+LVF KI
Sbjct: 204 FVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKI 263
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465
K LGGRVR M SG +PLSPD +FL++ G V +GYG+TET + D GD +GHV
Sbjct: 264 KAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHV 323
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G P CEIKLVDVPEM Y ++D P PRGEIC+RGP +FKGYYK+ +T E DEDGWFH
Sbjct: 324 GPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFH 382
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSAL 585
TGDIG W+P G LKIIDRKKN+FKL+QGEY+A EK+EN+Y V Q VYGDS S L
Sbjct: 383 TGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442
Query: 586 VAIVSVDQDALKAWAASEGI 605
VAIV D+D L+ WAA G
Sbjct: 443 VAIVVPDEDVLEKWAAENGG 462
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 473 bits (1219), Expect = e-160
Identities = 243/571 (42%), Positives = 327/571 (57%), Gaps = 21/571 (3%)
Query: 58 VYRSSRSPLKLVSRFPD-HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYR+ S FP +I T D F ++V+ + D K LG R VDG VG Y W TY
Sbjct: 24 VYRNLLSK----KGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++GS L G GS +G+Y N P+W++ AC+A+S I VPLYDTLGP A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLS--CLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
V YIV+HA + VF + + LL C S ++ IV + ++ GV+
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKS-AKRLKAIVSFTSVTEEESDKASQIGVKTY 198
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---- 290
++ + L G+ N +PPKP D+ TI YTSGT+G PKG VL+H + V G L
Sbjct: 199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258
Query: 291 -GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
K DVY+S+LPLAHI +R + G +VG+Y GD L DD+ L+PT+
Sbjct: 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAG 318
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG---KNPSPMWDRLVFNKIK 406
VPR++ RI+ GI A++ R +FNA Y K M G K SPM D L F K+K
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVK 378
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
KLGGR+R + SG +PLS ++ +FL++ V +GYG+TET + L D + G
Sbjct: 379 AKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET-LGPTTLGFPDEMCMLGT 437
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG+P E++L +VPEM Y +P PRGEICVRG +F GYYK+ T+EV+ +DGWF
Sbjct: 438 VGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVM-KDGWF 495
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA 584
HTGDIG +P G LKIIDRKKN+ KL+QGEY+A E +ENVY + V +VYGDSF S
Sbjct: 496 HTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSM 555
Query: 585 LVAIVSVDQDALKAWAASEGIQSLAPSDCSM 615
LVA+V +++ WA G CS+
Sbjct: 556 LVAVVVPNEENTNKWAKDNGFTGSFEELCSL 586
|
Length = 660 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 467 bits (1205), Expect = e-158
Identities = 195/539 (36%), Positives = 272/539 (50%), Gaps = 37/539 (6%)
Query: 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V D L + G ++ +TY E + SGL+ GI G + ++
Sbjct: 22 LAERVKDRPDGVALMYKEL-----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCL 203
NRPEW I D A A +SVP+Y T P+ + YI+N + + +F + L+ +L L
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136
Query: 204 SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL---LSQGRSNLQPFSPPKPDDVAT 260
+ P V ++VI + + +++ + L +PPKPDD+AT
Sbjct: 137 EDCPKVVDLIVIIDLVREAVE-AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLAT 195
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
I YTSGTTGTPKG +L+H NL+A VAG + P D +S+LPLAHI+ERA +
Sbjct: 196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA 255
Query: 320 -YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
Y GV V F + + +D+ +RPTV VPR++ ++Y GI V + +R +LF
Sbjct: 256 LYGGVTVLFKEDPRTLL--EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR 313
Query: 378 AAYNAK--KQAMLSGKNPSPMW----DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
A K + W DRLVF KI+D LGGR+R+ SG +PLSP++L F
Sbjct: 314 WALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFF 373
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ G + EGYG+TETS ++S + G VG P E+K+ D
Sbjct: 374 RSL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD------------- 419
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI VRGP + KGYYK+ T E EDGWF TGD+G G L I RKK + KL+
Sbjct: 420 -DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLS 478
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQSLAP 610
G+ IA E IE+ AK + Q V GD LVA++ D DAL+ WA S A
Sbjct: 479 NGKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISAS 536
|
Length = 613 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 467 bits (1202), Expect = e-157
Identities = 229/538 (42%), Positives = 322/538 (59%), Gaps = 17/538 (3%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
+I + F AV + + + LG R D VG Y W+TY E A +GS + G++
Sbjct: 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVN 100
Query: 137 KGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL 196
G G+Y N PEW+I AC++ VPLYDTLG +AV++I+NHA V F +
Sbjct: 101 PGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160
Query: 197 NSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK- 254
+S+LSCL + + ++ IV G + + GV ++ G + + PPK
Sbjct: 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCE--LPPKQ 218
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHI 309
D+ TI YTSGTTG PKG +L++ +IA V K D Y SYLPLAH+
Sbjct: 219 KTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
Y++ + + G ++GF+QGD LM+D+ AL+PT+FC VPR+Y+RIY GI + + G
Sbjct: 279 YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGG 338
Query: 370 GLRERLFNAAYNAKKQAM---LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
LR++LF+ AYN K + L + SP DRLVF+KIK+ LGGRVR + SGA+PL
Sbjct: 339 MLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRH 398
Query: 427 VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
V +FL++ +++GYG+TE+ C S + ++ G VG P E +L VPEM Y
Sbjct: 399 VEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVF-SMVGTVGVPMTTIEARLESVPEMGY 457
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+ PRGEIC+RG +F GY+K + T+EV+ DGWFHTGDIG W P G +KIIDRK
Sbjct: 458 DALSD-VPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRK 515
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
KNIFKL+QGEY+A E +EN Y++C + +VYG+SF S LVA+V D+ AL+ WAA+
Sbjct: 516 KNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAAN 573
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-143
Identities = 230/569 (40%), Positives = 334/569 (58%), Gaps = 21/569 (3%)
Query: 58 VYRSSRSPLKLVSRFPDHPE-IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYRS + FP+ E + + D F +V+ + + LG R VDG G+Y W TY
Sbjct: 27 VYRSIFAK----DGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTY 82
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++G+ L G+ + G+Y N PEW+I AC+A+ VPLYDTLG A
Sbjct: 83 QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGA 142
Query: 177 VKYIVNHASVQAVFCVPQTLNSLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235
V++I++H+ V VF + ++ L +C + ++ +V GG+ + T G+ I
Sbjct: 143 VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYA 202
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TL 290
+ L G K D+ TI YTSGTTG PKG ++S+ +++ +AG +
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+SYLPLAHI++R + + G A+GF++GD L++D+ L+PT+FC+V
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAV 322
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKD 407
PR+ +R+Y+G+ + G L++ +F++A++ K M G++ SP+ D+LVFNK+K
Sbjct: 323 PRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQ 382
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC---LISQLDEGDNLSGH 464
LGG VR + SGA+PL+ V FL++ V +GYG+TE SC +S DE D L G
Sbjct: 383 GLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE-SCAGTFVSLPDELDML-GT 440
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG P +I+L VPEM Y + PRGEIC+RG +F GYYK E TKEV+ DGW
Sbjct: 441 VGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWL 498
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA 584
HTGD+G W P G +KIIDRKKNIFKL+QGEY+A E IEN+Y + + V +VYG+SF S
Sbjct: 499 HTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESF 558
Query: 585 LVAIVSVDQDALKAWAASEGIQSLAPSDC 613
LVAI + +Q L+ WAA G+ + C
Sbjct: 559 LVAIANPNQQILERWAAENGVSGDYNALC 587
|
Length = 666 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 405 bits (1042), Expect = e-133
Identities = 207/560 (36%), Positives = 307/560 (54%), Gaps = 42/560 (7%)
Query: 85 FVRAVDTFRDYKYLGTRVRV--------DG------TVGEYKWMTYGEAGTARTEVGSGL 130
F ++ + D + LGTR + DG +GEY+W+TYG+ SGL
Sbjct: 64 FEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGL 123
Query: 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 190
+ G +K + ++ R EWLI C + V +Y +LG +A+ + +N V V
Sbjct: 124 VALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVI 183
Query: 191 CVPQTLNSLLSCLSEVPTVRLIVVI-GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + L L+ S++ TV+ ++ + D SL ++ + ++S + G+ N
Sbjct: 184 CDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVD 243
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAH 308
P P+D+A I YTSG+TG PKG +++HGN++A+VAG T+ K +DVY++YLPLAH
Sbjct: 244 PDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAH 303
Query: 309 IYERANQVMTVYSGVAVGFYQGDNMKLMD-----------DMAALRPTVFCSVPRLYNRI 357
I E A + + G A+G+ G + L D D +AL+PT+ +VP + +R+
Sbjct: 304 ILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV 361
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK------NPSPMWDRLVFNKIKDKLGG 411
G+ V GGL ++LF+ AY ++ A + G +WD LVF KI+ LGG
Sbjct: 362 RDGVRKKVDAKGGLAKKLFDIAY-KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-GHVGSPNA 470
R+RFM SG +PLS D F+ IC G + +GYG+TET C + E D+ S G VG P
Sbjct: 421 RIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET-CAGATFSEWDDTSVGRVGPPLP 479
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEV--IDEDG--WFHT 526
C +KLV E Y D+P PRGEI + GP + GY+K++ +T EV +DE G WF+T
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALV 586
GDIG + P G L+IIDRKK+I KL GEY++ K+E + +V V+ D F+S V
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCV 599
Query: 587 AIVSVDQDALKAWAASEGIQ 606
A+V Q AL+ WA GI
Sbjct: 600 ALVVPSQQALEKWAKKAGID 619
|
Length = 696 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = e-115
Identities = 182/524 (34%), Positives = 272/524 (51%), Gaps = 36/524 (6%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E +++TY E G GL G++KGS + +Y R EWL + + S ++ +Y
Sbjct: 118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVY 177
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPI 227
LG DA+ Y + +A+ C + + +LL + +P +I + D +P+
Sbjct: 178 ANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYL-----DSLPASVD 232
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKP---DDVATICYTSGTTGTPKGAVLSHGNLIAS 284
T G +++ +++++++G S P DD+A I YTSGTTG PKG + +HG+L A
Sbjct: 233 TEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292
Query: 285 VAGATLGTKFY-------PSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD 337
+ L + + Y SYLPLAHI E + + G +GF G L D
Sbjct: 293 IL--ALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTD 348
Query: 338 -------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
D+ RP VPR+++ I + + + G L+ R+F+ AY ++ +A+ G
Sbjct: 349 TFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEG 408
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC 450
K+ +P W+ VF+ + LGGRVR M SG PLS +F+ + FG V +G+G+TET C
Sbjct: 409 KD-TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466
Query: 451 LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
GD VG E+KL+D E +T D P PRGEI +RGP +FKGYYK
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT--DTPEPRGEILLRGPFLFKGYYKQ 524
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKF 570
E T+EV+DEDGWFHTGD+G G L+II R K + K GEYIA E +E +Y + +
Sbjct: 525 EELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNEL 584
Query: 571 V---GQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQSLAPS 611
V G C V S + A+V D+ A+A GI+ P+
Sbjct: 585 VVPNGVC-VLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPA 627
|
Length = 700 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 345 bits (887), Expect = e-113
Identities = 137/355 (38%), Positives = 191/355 (53%), Gaps = 50/355 (14%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE-R 312
KPDD+AT+ YTSGTTG PKG +L+H NL+A A P D +S+LPLAH++E R
Sbjct: 86 KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + + SG V F + L++D+ +RPTVF +VPR++ +IYAGI + V +G L+
Sbjct: 146 LGEYLPLSSGARVNFAESPE-TLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLK 204
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
+LF A GGR+RF SG +PL P+VL+F +
Sbjct: 205 RKLFRWA----------------------------LGGGRLRFAVSGGAPLPPEVLEFFR 236
Query: 433 ICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + + GD G VG P E+++ +
Sbjct: 237 A-LGIPILEGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAED------------- 282
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552
GEI VRGP + KGYYK+ T E +DEDGW HTGDIG G L I DRKK++ A
Sbjct: 283 -GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAG 341
Query: 553 GEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGI 605
G+ IA + IEN ++ Q V GD + +AL+ + D +AL+ WA G+
Sbjct: 342 GKNIAPQPIENALKASPYISQAVVVGDDRPYLTALIVL---DPEALEKWAEQHGL 393
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-100
Identities = 163/502 (32%), Positives = 226/502 (45%), Gaps = 64/502 (12%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
G EY T+ + + + L G+ G I + N EW+I D A +
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS 224
SVPLY TL + ++Y++ H+ +A+F V + + + I+
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALF-VGKLDDWDAMKAGVPEGLPTII----------L 106
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS 284
P +T + +LL+ LQ P+P+D+ATI YTSGTTG PKG +LS G +
Sbjct: 107 FPYSTLKDHYKWDDLLAATEP-LQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFA 165
Query: 285 VAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQG-DNMKLMDDMAAL 342
G P+D +SYLPLAHI ER + ++YSG V F + D D+
Sbjct: 166 AQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--TFAADLQRA 223
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
RPTVF SVPRL+ + GI + + L P+ LV
Sbjct: 224 RPTVFFSVPRLWTKFQQGILAKL--PPEKLNLLLKI----------------PILSSLVK 265
Query: 403 NKIKDKLG-GRVRFMGSGASPLSPDVLDF-----LKICFGGRVTEGYGMTETSCLISQLD 456
KI LG + R GSGA+P+ P ++ + L IC EGYGMTE +
Sbjct: 266 KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPIC------EGYGMTENFAYSTLNY 319
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD G VG P E+K+ SED GEI +R P + GYYKD +T E
Sbjct: 320 PGDRRIGTVGKPIPGVELKI---------SED-----GEILIRSPGLMSGYYKDPEKTAE 365
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
EDGW HTGD G G LKI R K +FK ++G+Y+A IEN+ + V Q V
Sbjct: 366 AFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCV 425
Query: 577 YGDSFNSALVAIVSVDQDALKA 598
G VA+V + + A
Sbjct: 426 VGSGLPQP-VALVVLSEAADPL 446
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 1e-99
Identities = 125/473 (26%), Positives = 191/473 (40%), Gaps = 72/473 (15%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + + L G+ G + + N PEW++ A VPL +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
+ + YI+ + + + + L LL L ++ + ++++ G +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV-----------GDDGEGLD 109
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF 294
+ L G S P P PDD+A I YTSGTTG PKG +L+H NL+A AG
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169
Query: 295 YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK---LMDDMAALRPTVFCSVP 351
P D + LPL + +G + + L+D + + TV VP
Sbjct: 170 TPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVP 229
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L + +K+ LS
Sbjct: 230 TLLRLLLKAP--------------------EEKKYDLS---------------------- 247
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS--CLISQLDEGDNLSGHVGSP 468
+R + SG PL P++L L+ FGG + GYG TET+ + + + G +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307
Query: 469 NAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF- 524
E+K++D E +P P GE+C+RGP + +GY D T E EDGW
Sbjct: 308 LPGVEVKVLD-------EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGM 360
Query: 525 -HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
TGD+G W G L+I+ RK + K+ GE I +IE V + V + V
Sbjct: 361 YRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 3e-83
Identities = 145/512 (28%), Positives = 221/512 (43%), Gaps = 80/512 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + + L G+ G + + N PE+LI A ++VPL L
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + YI+N A + + + L + +P V +++++G DD++P
Sbjct: 99 PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP---------- 148
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+T L ++G P PDD+A + YTSGTTG PKG VL+H NL+A+ AG A LG
Sbjct: 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208
Query: 292 TKFYPSDVYISYLPLAHIYERANQVM---TVYSGVAVGFYQG---DNMKLMDDMAALRPT 345
P DV +S+LPL HI+ V + G + D +++ + + T
Sbjct: 209 GGLTPDDVVLSWLPLFHIF--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVT 266
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
V VP + L +
Sbjct: 267 VLSGVPTFLREL-------------LDNPEKD---------------------------- 285
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLS 462
D L +R + SG +PL P++L+ + FG + EGYG+TETS +++ D+
Sbjct: 286 DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKP 345
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG 522
G VG P E+++VD E P GEI VRGP + KGY+ T E DEDG
Sbjct: 346 GSVGRPLPGVEVRIVDPD----GGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDG 401
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---D 579
W TGD+G G L I+ R K++ GE I E+IE V A+ V + V G +
Sbjct: 402 WLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDE 460
Query: 580 SFNSALVAIV--------SVDQDALKAWAASE 603
+ +VA+V + + L+A+
Sbjct: 461 RWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 1e-68
Identities = 149/520 (28%), Positives = 238/520 (45%), Gaps = 66/520 (12%)
Query: 112 KW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
W +TY + A + + G+ + +G+ N PEW I I+V +Y
Sbjct: 5 GWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIY 64
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGG-IDDQIPSLPI 227
T P+A +Y+ + + L +L+ ++P ++ I+ + ++ P+L
Sbjct: 65 TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL-- 122
Query: 228 TTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL- 281
++ + GRS KP+ T+ YTSGTTG PKG +LSH N+
Sbjct: 123 ------YSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNIT 176
Query: 282 -IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG----FYQGDNMK-- 334
A A + + + +SYLPL+HI A Q++ ++ ++VG F Q D +K
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLPISVGGCVYFAQPDALKGT 233
Query: 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA------YNAKKQAML 388
L+ + +RPT F VPR++ +I + + S GL+ ++ + A N K
Sbjct: 234 LVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMG-- 291
Query: 389 SGKNPSPMW----DRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDF---LKICFGGRVT 440
G++P PM +LVF K++ LG R + +GA+P+S + L+F L I +
Sbjct: 292 -GESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNI----PIM 346
Query: 441 EGYGMTETSCL--ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
E YGM+ETS +S LS G CE K+ + P+ + GEIC+
Sbjct: 347 ELYGMSETSGPHTVSNPQNYRLLS--CGKALPGCETKIHN-PDAD--------GIGEICI 395
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
G +F GY E +T+E IDEDGW H+GD+G G L I R K + A GE +
Sbjct: 396 WGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPP 455
Query: 559 EKIEN-VYAKCKFVGQCFVYGDS--FNSALVAI-VSVDQD 594
IE V + + + GD F S L+ + VD +
Sbjct: 456 VPIEEAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE 495
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 2e-67
Identities = 133/512 (25%), Positives = 208/512 (40%), Gaps = 85/512 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY E + + L G+ KG + ++ N E+L A + P+ L
Sbjct: 32 TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLK 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P+ + YI+N A + V + + L + L ++PTVR ++V G ++
Sbjct: 92 PEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPA------APLAPEV 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
Y LL+ S+ F +D A + YTSGTTG PKG VLSH NL K
Sbjct: 146 GEYEELLA-AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLK 204
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSG---VAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+ +P+ H++ + + +G V + +N L+D + R T F +V
Sbjct: 205 LSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPEN--LLDLIETERVTFFFAV 262
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P ++ Q +L + F+
Sbjct: 263 PTIW------------------------------QMLLKAPRAYFVD----FS------- 281
Query: 411 GRVRFMGSGASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLIS------QLDEGDNLSG 463
+R + G + L P +L +F + FG + +GYGMTETS ++S QL
Sbjct: 282 -SLRLVIYGGAALPPALLREFKEK-FGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVI 518
G P E ++VD + + P GEI VRGP + +GY+ T E I
Sbjct: 340 SAGRPLPGVEARIVD-DDGD------ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D GW HTGD+G G L I DR K++ GE I ++E+ V + V G
Sbjct: 393 D-GGWLHTGDVGYIDEDGYLYITDRIKDVIISG-GENIYPRELEDALYGHPAVAEVAVIG 450
Query: 579 ---DSFNSALVAIV------SVDQDALKAWAA 601
+ + VA+V ++D L+A+
Sbjct: 451 VPDEKWGERPVAVVVLKPGATLDAKELRAFLR 482
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 206 bits (528), Expect = 6e-60
Identities = 113/450 (25%), Positives = 177/450 (39%), Gaps = 116/450 (25%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L G+ KG + L N P++ I + VP+
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P +++ +N + + +
Sbjct: 85 PRELEHQLNDSGAKVLIVA----------------------------------------- 103
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+++ + L+ G + L PDD+A + YT GTTG PKGA+L+H NL+A+V A +
Sbjct: 104 ISFEDALASG-APLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVK 162
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG---------DNMKLMDDMAAL 342
D +++ LPL HI+ +TV + +G G + ++ ++
Sbjct: 163 DLREGEDRFLTALPLFHIFG-----LTV--NMLLGLRLGATNVLVPNFRPINVLKEIKRY 215
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R T+F VP LYN L N K+ S
Sbjct: 216 RFTIFPGVPTLYNA------------------LLNHP--EFKKYDFS------------- 242
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLIS-QLDEGDN 460
+R SG +PL +V + F + G + EGYG+TETS + + +G+
Sbjct: 243 ---------SLRLCISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGER 292
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEV 517
G +G P E+K+VD E P GE+ VRGP + KGY+ +T EV
Sbjct: 293 KPGSIGLPLPGTEVKIVD-------DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+ DGW TGDIG G I+DRKK++
Sbjct: 346 LT-DGWLRTGDIGYMDEDGYFYIVDRKKDM 374
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 8e-60
Identities = 108/364 (29%), Positives = 156/364 (42%), Gaps = 66/364 (18%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VLSH NL+A+ DV +S LPL H+ + +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 317 MT-VYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ + +G V Y+G ++ + R TV VP LY+ +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL---------------- 104
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
K A G + S + R + SG PLSP++L+ +
Sbjct: 105 ---------AKAAEDRGYDLSSL-----------------RLLISGGEPLSPELLERFEE 138
Query: 434 CFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + S D G VG P E+++VD E +P P
Sbjct: 139 RPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDE-------EGKPLP 191
Query: 493 ---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
GE+ VRGP + KGY+ + +T EDGW+ TGD+G G L I R K++ K
Sbjct: 192 PGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIK 251
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWA 600
+ GE + ++E+V + V + V G + +VA V + LKA
Sbjct: 252 VG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310
Query: 601 ASEG 604
Sbjct: 311 RERL 314
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-54
Identities = 109/357 (30%), Positives = 159/357 (44%), Gaps = 55/357 (15%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VL+HGNL A+ ++ SDV + LPL H++ N +
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148
Query: 317 M-TVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+++G +V F + + D + L R TVF VP +Y R+ E
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEH-----------YEF 197
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
AA A+ +R SG++ L VL+ +
Sbjct: 198 DDAAAAAARN----------------------------LRLFVSGSAALPVPVLERWEER 229
Query: 435 FGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494
G + E YGMTET +S +G+ G VG P E+++VD + + G
Sbjct: 230 TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV---G 286
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK-NIFKLAQG 553
EI VRGP +F Y+ T E EDGWF TGD+G+ G +I+ RK +I K G
Sbjct: 287 EIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSG-G 345
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWAA 601
++A +IE + V + V G + A+VA+V ++ L+AWA
Sbjct: 346 YKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAR 402
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-51
Identities = 115/376 (30%), Positives = 189/376 (50%), Gaps = 15/376 (3%)
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
G+ I+ + ++ +N + PD + +I YTSGT+G PKG +LS+ NL +V
Sbjct: 277 KLGISIILFDDMTKNKTTNYK-IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP 335
Query: 288 ATLGTKF--YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
+ F Y ++SYLP++HIYER ++ G + + D D+ +
Sbjct: 336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGN 395
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFN 403
+ VP+++NRIY I + + L+ L + +K G S + + + +
Sbjct: 396 ILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGF--SKFLEGITHISS 453
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
KIKDK+ + + +G LSP + + L + +GYG+TET+ I DN +
Sbjct: 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTE 513
Query: 464 HVG---SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
+G SPN +++ + Y + D P+GE+ ++ IF GY+ ++ QTK E
Sbjct: 514 SIGGPISPNTKYKVRTWET----YKATDTL-PKGELLIKSDSIFSGYFLEKEQTKNAFTE 568
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
DG+F TGDI G L +DR K + KL+QGEYI + + N+Y++ F+ C VYGD
Sbjct: 569 DGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD 628
Query: 581 FNSALVAIVSVDQDAL 596
+AI+SVD+ L
Sbjct: 629 SMDGPLAIISVDKYLL 644
|
Length = 746 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-50
Identities = 113/450 (25%), Positives = 177/450 (39%), Gaps = 77/450 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L GI KG + ++ N P W+I + VPL
Sbjct: 31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D YI+ +A+F + L S + +P + +V+ + ++
Sbjct: 91 ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEE------DDPHTEKM 144
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
T+++ L+ G + PDDVA I +TSGTTG PKGA+L+H L+ A+ LG
Sbjct: 145 KTFTDFLAAG-DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNM---------KLMDDMAAL 342
D Y++ P H++ GV +G + ++ +
Sbjct: 204 LT--EGDRYLAANPFFHVF-----GYKA--GVNAPLMRGATILPLPVFDPDEVFRLIETE 254
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R TV P +YN + + + LS
Sbjct: 255 RITVLPGPPTMYNSLL--------------------QHPDRSAEDLSS------------ 282
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETS---CLISQLDEG 458
+R +GA+ + +L+ + G V GYG++E S D+
Sbjct: 283 ----------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDR 332
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
++G +G+ A E K+V+ E GE+ VRGP + KGYY D T I
Sbjct: 333 KTVAGTIGTAIAGVENKIVN----ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAI 388
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548
D DGW HTGD+G G L I+DRKK++F
Sbjct: 389 DADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-50
Identities = 106/372 (28%), Positives = 151/372 (40%), Gaps = 82/372 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD A I YTSGTTG PKGA+L+H N++ + D + +PL H++
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF---- 56
Query: 315 QVMTVYSGVAVGFYQGDNMKLM---DDMAAL------RPTVFCSVPRLYNRIYAGITSAV 365
+ GV G + LM D AAL R T VP ++
Sbjct: 57 ---GLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMF----------- 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
A+L P +D+ +R SG +P+ P
Sbjct: 103 -------------------IALLE----HPDFDKFDL--------SSLRTGISGGAPVPP 131
Query: 426 DVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPE 481
+++ ++ F +T GYGMTETS + +Q D VG P E+K+VD
Sbjct: 132 ELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD--- 188
Query: 482 MNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P GEICVRG + KGYY D T E ID DGW HTGD+G G L
Sbjct: 189 ----PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYL 244
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------ 589
+I+ R K++ GE I +IE V + V G + + A V
Sbjct: 245 RIVGRIKDMIIRG-GENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGA 303
Query: 590 SVDQDALKAWAA 601
++ ++ L A+
Sbjct: 304 TLTEEELIAFCR 315
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 9e-50
Identities = 112/371 (30%), Positives = 156/371 (42%), Gaps = 88/371 (23%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DD A I YTSGTTG PKG +L+H NL+A+ A G P DVY+ PL H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFL 60
Query: 316 VMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ + +G V F D ++D + R T VP ++ R+ L
Sbjct: 61 LPALAAGGTVVLMPKF---DPEAVLDLIERHRVTHTFLVPTMFQRL-------------L 104
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
R F A Y+ LS +R + GA+P+ ++ +
Sbjct: 105 RLPDF-ARYD------LS----------------------SLRLIIYGAAPMPAELKRAM 135
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FG +GYGMTET + L D L G VG P E+++VD + +
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVD-------EDGR 188
Query: 490 PCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK- 545
P GEI VRGP + GY+ T E + DGW HTGD+G G L I+DRKK
Sbjct: 189 ELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKD 247
Query: 546 -------NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------ 589
NI+ AE +ENV V V G + + A+VA+V
Sbjct: 248 MIISGGENIY--------PAE-VENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGA 298
Query: 590 SVDQDALKAWA 600
++D + L A+
Sbjct: 299 TLDAEELIAFC 309
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 6e-43
Identities = 131/520 (25%), Positives = 196/520 (37%), Gaps = 103/520 (19%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA + D T V V G Y + + R + S L GI KG + +
Sbjct: 12 RAAKVYPDR----TAV-VYGDR-RYTYRETYD----RCRRLASALSKLGIGKGDVVAVLA 61
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N P L + VPL L D + +I+NH+ + +F + L+ L+
Sbjct: 62 PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ T +I + P + Y +LL+ G + P P D ++ YTS
Sbjct: 122 LSTKEIIDTEIIVIS-----PAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTS 176
Query: 266 GTTGTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-----VMTV 319
GTTG PKG V +H G + ++ G + VY+ LP+ H N +T
Sbjct: 177 GTTGNPKGVVYTHRGAYLNAL-GNVIEWGMPDRPVYLWTLPMFH----CNGWCFPWAITA 231
Query: 320 YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379
G V + D + D + + T C P + N + A
Sbjct: 232 VGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNML--------------------AN 271
Query: 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439
+ L VR M +GA P P + G V
Sbjct: 272 APEADKL---------------------PLPRPVRVMTAGAPP--PPAVIKKMEELGFEV 308
Query: 440 TEGYGMTETSCLIS---QLDEGDNLS-------------GHVGSPNAACEIKLVDVPEMN 483
T YG+TET I+ E D L +VG E+ +VD PE
Sbjct: 309 THVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVG----LEEVDVVD-PETM 363
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ PR GEI +RG + KGYYK+ T+E GWFH+GD+ + P G +
Sbjct: 364 -----KDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYI 417
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+I DR K+I ++ GE I++ ++E V K V + V
Sbjct: 418 EIKDRSKDII-ISGGENISSIEVEGVLYKHPAVLEAAVVA 456
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 8e-43
Identities = 103/380 (27%), Positives = 150/380 (39%), Gaps = 102/380 (26%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
D ATI +TSG+TG PK V + GN +AS G+ P D ++ LPL H+
Sbjct: 77 DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV------ 130
Query: 316 VMTVYSGVAV---GFYQGDNMKLMD---------DMAALRPTVFCSVPRLYNRIYAGITS 363
SG+A+ G + L D + T VP R+
Sbjct: 131 -----SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL------ 179
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
L + + A+L LGG +P+
Sbjct: 180 -------LESLGARWLSSLR--AVL--------------------LGG---------API 201
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVD 478
P +L+ + G + YGMTET+ SQ+ D+ G VG P E+++V+
Sbjct: 202 PPSLLEQAR-QRGIPLYPTYGMTETA---SQVATLKPDDFLAKLGSVGKPLPGRELRIVN 257
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ GEI VRGP +F GY T + DEDGWFHTGD+G G L
Sbjct: 258 PQD------------GEILVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYL 304
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV-----S 590
++ R+ ++ ++ GE I E+IE V + V + V G D + VA V
Sbjct: 305 YVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDP 363
Query: 591 VDQDALKAWAASEGIQSLAP 610
V + L+A+ A LA
Sbjct: 364 VSVEELQAFLA----DKLAK 379
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 110/368 (29%), Positives = 160/368 (43%), Gaps = 73/368 (19%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY-ERA 313
PDD A I +TSGTTG PKG L+H NL+AS K PSD ++ +PL HI+
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 314 NQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
+ + T+ +G +V F K DD+A R T + +VP ++
Sbjct: 61 SLLATLLAGGSVVCPPKF---SASKFWDDIAKYRVTWYSAVPTIH--------------- 102
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
Q +L P+P K R+RF+ S ++PL P VLD
Sbjct: 103 ---------------QILLKTAKPNPG-----------KPPPRLRFIRSASAPLPPAVLD 136
Query: 430 FLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
L+ FG V E YGMTE + I+ L G VG P A E+ ++D +
Sbjct: 137 RLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAILD-------DD 188
Query: 488 DQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+P P GEI +RGP + GY + +E DGWF TGD+G G L + R
Sbjct: 189 GRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE-AFRDGWFRTGDLGYLDEDGYLFLTGRI 247
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDA 595
K + GE I+ ++E V + V + V+G + + + A V V +
Sbjct: 248 KELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEE 306
Query: 596 LKAWAASE 603
L+ +A
Sbjct: 307 LRDFARKR 314
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 4e-41
Identities = 103/381 (27%), Positives = 153/381 (40%), Gaps = 81/381 (21%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ KPDD A I +TSG+ G PKG VLSH NL+A++ DV + LPL H +
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAF 199
Query: 311 E-RANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
++ + +G+ V +Y D K+ + + + T+ C P R YA
Sbjct: 200 GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFL-RGYAR------- 251
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
NA + S RLV +GA L
Sbjct: 252 -------------NAHPE-DFSSL-------RLVV---------------AGAEKLPEAT 275
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + FG R+ EGYG TE S +IS N G VG P E+++V
Sbjct: 276 RELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETH----- 330
Query: 488 DQPCPRGE---ICVRGPLIFKGYYKDEIQTKEV-IDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ P GE + VRGP + GY +E +T EV + DGW+ TGDIG G L I+ R
Sbjct: 331 -EELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIV-------------- 589
K K+ GE ++ +E + ++ + + A V +
Sbjct: 390 LKRFAKIG-GEMVSLTAVEELLSE--------ILPEDSLHAAVEVPDEKKGEKIVLLTTT 440
Query: 590 -SVDQDALKAWAASEGIQSLA 609
+D + L A G+ +LA
Sbjct: 441 EDLDPEELNAILREAGLPNLA 461
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-40
Identities = 105/475 (22%), Positives = 162/475 (34%), Gaps = 98/475 (20%)
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI GS + L N E +++ HAC L L + + VQ +
Sbjct: 19 QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD 78
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S L E Q + + + GR +
Sbjct: 79 --------SLLEE-----------------------KDFQADSLDRIEAAGRYETSLSAS 107
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
D +AT+ +TSGTTG PK + N AS G+ F D ++ LPL HI
Sbjct: 108 FNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL 167
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + G + N +L++ +A R T VP NR+
Sbjct: 168 SILFRWLIEGATLRIVDKFN-QLLEMIANERVTHISLVPTQLNRL------LDEGGHNEN 220
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
R LGG S + +++
Sbjct: 221 LRKI-------------------------------LLGG---------SAIPAPLIE-EA 239
Query: 433 ICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+G + YGMTET ++ E + VG P A EIK+ D
Sbjct: 240 QQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI---------KVDNKE 290
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI V+G + KGY + ++ GWF+TGDIG G L ++ R+ ++ ++
Sbjct: 291 GHGEIMVKGANLMKGYLYQG-ELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-IS 348
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVS----VDQDALKAW 599
GE I E+IE V + + + V + VA + + Q L A+
Sbjct: 349 GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAY 403
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-39
Identities = 108/473 (22%), Positives = 160/473 (33%), Gaps = 131/473 (27%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE A + + L G+ G + N E+++V AC+ + P+
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I+ A + +F VP G D ++P
Sbjct: 62 ERELGFILRQARARVLF-VPDEF-------------------RGFD--YAAMP------- 92
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
DDVA + YTSGTTG PKG + +H L+A V
Sbjct: 93 ----------------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ----GDNMKLMDD---------MA 340
P DV + PLAHI +G G G + L D +
Sbjct: 131 LTPDDVVLMPSPLAHI-----------TGFLYGLELPLLLGATVVLQDRWDPARALELIR 179
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
T A + +A +G L
Sbjct: 180 EHGVTFTMGATPF----LADLLAAADAAGPDLPSL------------------------- 210
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL--DEG 458
R G +P+ ++ G +V YGMTE + D
Sbjct: 211 -------------RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPD 257
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTK 515
D + G P E+++VD + P GE+ VRGP +F GY D
Sbjct: 258 DKRAATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNT 309
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKC 568
E +DGWF TGD+G G L+I RKK+I + GE I+A +IE++ +
Sbjct: 310 EAFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRH 361
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 5e-38
Identities = 109/432 (25%), Positives = 166/432 (38%), Gaps = 88/432 (20%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + YI+NHA + +F L L + V + D P T+
Sbjct: 84 LSPEQIAYIINHAEDKVIFVDD----DFLPLLEAIAPRLPTVKAVVVYDDADM-PETSLP 138
Query: 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGA 288
+ Y LL + P + A +CYTSGTTG PKG V SH +L+ +
Sbjct: 139 NVYAYEELLEEESPEY--EWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL 196
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG---FYQGDNMK---LMDDMAAL 342
SD + +P+ H N Y+ VG G + L+D +
Sbjct: 197 PDSLGLSESDTVLPVVPMFH----VNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEE 252
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
+ TV VP ++ GL L A + + S +
Sbjct: 253 KVTVSAGVPTIWL--------------GLLNYL-----EANGKDLSSLRR---------- 283
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--------- 453
+ G S L +++ L+ G V +GMTETS L +
Sbjct: 284 -------------VVVGGSALPRSLIEKLEE-RGVEVIHAWGMTETSPLGTVSRLKPHLV 329
Query: 454 --QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKG 506
+E L G P E+++VD E P GE+ VRGP +
Sbjct: 330 DLPEEEKLELRAKQGRPVPGVELRIVD-------DEGNELPWDGKTVGELVVRGPWVTGS 382
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566
YYKD +T+E+ DGWF TGD+ + G ++I DR K++ K + GE+I++ ++EN
Sbjct: 383 YYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQITDRAKDVIK-SGGEWISSVELENALM 440
Query: 567 KCKFVGQCFVYG 578
V + V G
Sbjct: 441 AHPAVAEAAVVG 452
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 6e-38
Identities = 65/167 (38%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
+R + SGA+PLS ++ + L+ F + +GYGMTET + GD G VG
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E K+VD ++ RGE+CV+GP I KGY + TKE IDEDGW HTGDIG
Sbjct: 325 VEAKIVDEDGGKSLGPNE---RGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381
Query: 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ G I+DRKK + K + AE +E V + V V G
Sbjct: 382 FDEDGNFYIVDRKKELIKYKGYQVPPAE-LEAVLLEHPKVADAAVIG 427
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-37
Identities = 100/331 (30%), Positives = 139/331 (41%), Gaps = 64/331 (19%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG +L+H L+ + A P DV ++ LPL HI Q
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI---NAQA 138
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
+VY+ + VG L P F S R +++ VR G +F
Sbjct: 139 YSVYAALLVG-----------ATLVLLPR-F-SASRFWDQ--------VRKHGA---TVF 174
Query: 377 NAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
N AM + K P DR +RF+ PL + +
Sbjct: 175 NLL-----GAMAAILMKQPPSPDDR----------DHPLRFVFGA--PLPAAIWPAFEER 217
Query: 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP- 492
FG ++ EGYGMTET I + GD G G P E+++VD + + P
Sbjct: 218 FGVKLVEGYGMTETGVPI--IAPGDPAPPGSCGRPRPGVEVRIVD-------EDGREVPP 268
Query: 493 --RGEICVR---GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
GE+ VR +FKGYY T + +GWFHTGD G G L +DRKK+
Sbjct: 269 GEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDEDGFLYFVDRKKDA 327
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ +GE I++ ++E V + V
Sbjct: 328 IR-RRGENISSYEVEAAILAHPAVAEAAVVA 357
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-36
Identities = 99/316 (31%), Positives = 139/316 (43%), Gaps = 82/316 (25%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TLGTKFYPSDVYISYLPLA 307
P PDDVA I YTSGTTG PKGA L+H NL A+ A LG + ++ LP+
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG---PERVLAALPMF 272
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIY 358
H Y +T+ + + G + L +D M PT VP LY +I
Sbjct: 273 HAYG-----LTL--CLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA 325
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAM-LSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
A+++ + LSG VR
Sbjct: 326 EA---------------------AEERGVDLSG----------------------VRNAF 342
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-----GHVGSPNAAC 472
SGA L ++ + GG + EGYG+TETS +I G+ +S G+VG P
Sbjct: 343 SGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV----GNPMSDDRRPGYVGVPFPDT 398
Query: 473 EIKLVDVPEMNYTSEDQP-CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E+++VD PE E P GE+ VRGP +FKGY+ +T + DGWF TGD+ +
Sbjct: 399 EVRIVD-PED--PDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV 454
Query: 532 WIPGGRLKIIDRKKNI 547
G ++I+DR K +
Sbjct: 455 MEEDGFIRIVDRIKEL 470
|
Length = 573 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-35
Identities = 111/391 (28%), Positives = 174/391 (44%), Gaps = 80/391 (20%)
Query: 207 PTVRLIV--VIGGIDDQIP--SLPITTGVQILTYSNLLSQGRSNLQPFSP--PKPDDVAT 260
P RL++ V+ + +P LP Q + +++ L++G QP + P+ DDVA
Sbjct: 159 PLKRLLINAVVKHVKKMVPAYHLP-----QAVKFNDALAKGAG--QPVTEANPQADDVAV 211
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ YT GTTG KGA+L+H NL+A++ G+ L ++ I+ LPL HIY
Sbjct: 212 LQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEG---CEILIAPLPLYHIY---- 264
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR-- 372
T + M L+ + + S PR + + V+ G +
Sbjct: 265 -AFTFHCMA---------MMLIGNH-----NILISNPR-------DLPAMVKELGKWKFS 302
Query: 373 -----ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
LF A N + + +L F+ +K L SG L
Sbjct: 303 GFVGLNTLFVALCNNEA------------FRKLDFSALKLTL--------SGGMALQLAT 342
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYGMTETS ++S G +G P + K++D + N
Sbjct: 343 AERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNELPL 401
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+ GE+CV+GP + KGY++ T E++D DGW TGDI + G ++I+DRKK++
Sbjct: 402 GEV---GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDM 458
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
L G + ++E+V A V QC G
Sbjct: 459 I-LVSGFNVYPNELEDVLAALPGVLQCAAIG 488
|
Length = 562 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-33
Identities = 130/475 (27%), Positives = 188/475 (39%), Gaps = 107/475 (22%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+DG G TY + V +GL GI +G + L N PE+++ S
Sbjct: 43 IDGATGRV--YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA 100
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
++ T P F P + +LI+ D++
Sbjct: 101 VTT----TANP---------------FYTPAEIAKQAKASG----AKLIITQSCYVDKLK 137
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFS---------PPK----PDDVATICYTSGTTGT 270
L GV ++T + FS P+ PDDV + Y+SGTTG
Sbjct: 138 GLAEDDGVTVVT----IDDPPEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGL 193
Query: 271 PKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVM--TVYSGVA 324
PKG +L+H L+ SVA G F+ DV + LP+ HIY N V+ + G A
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS-LNSVLLCGLRVGAA 252
Query: 325 VGFYQG-DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
+ + L++ + + T+ VP + I AK
Sbjct: 253 ILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAI------------------------AK 288
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEG 442
SP+ ++ + I R + SGA+PL ++ D + + +G
Sbjct: 289 ----------SPVVEKYDLSSI--------RMVLSGAAPLGKELEDAFRAKLPNAVLGQG 330
Query: 443 YGMTETS-----CLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYT-SEDQPCPRG 494
YGMTE CL + SG G+ NA E+K+VD PE + +QP G
Sbjct: 331 YGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNA--ELKIVD-PETGASLPRNQP---G 384
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
EIC+RGP I KGY D T ID+DGW HTGDIG L I+DR K + K
Sbjct: 385 EICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIK 439
|
Length = 537 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 123/493 (24%), Positives = 191/493 (38%), Gaps = 72/493 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
T+ E + L G+ G + + +NR E++ A + I+VP+ L
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + ++V+ V + VP + +VV GG D +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDD----------SV 152
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
L Y +LL++ P P D A I YTSGTTG PKGAVL+H NL
Sbjct: 153 LGYEDLLAEAGPAHAPVDIPN-DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNG 211
Query: 294 -FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY---QGDNMKLMDDMAALRPT-VFC 348
SDV +PL HI + + + G Y D +L+D + A + T +F
Sbjct: 212 ADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFL 271
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
VP A+ QA+ + + P L
Sbjct: 272 -VP------------------------------AQWQAVCAEQQARPRDLAL-------- 292
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLS--GHV 465
R + GA+P S +L + F ++ +G TE S + L D + G V
Sbjct: 293 -----RVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G ++VD MN + GEI R P + GY+ + T E GWFH
Sbjct: 348 GKVIPTVAARVVD-ENMNDVPVGEV---GEIVYRAPTLMSGYWNNPEATAEAFA-GGWFH 402
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFN 582
+GD+ G + ++DRKK++ ++ GE I ++ENV A + + V G + +
Sbjct: 403 SGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWG 461
Query: 583 SALVAIVSVDQDA 595
VA+ +V D
Sbjct: 462 EVPVAVAAVRNDD 474
|
Length = 542 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 94/366 (25%), Positives = 147/366 (40%), Gaps = 72/366 (19%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DDVA I YTSGTTG PKG + +H ++A+ A + + P V +++LPL H+ A
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV---AGM 140
Query: 316 VMTVYSGVAVGFYQGDNMKLM---DDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
++ + + Y G + L+ D AA R A+
Sbjct: 141 QGSMNAPI----YTGATLVLLTRWDREAAAR--------------------AIERYRV-- 174
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN-KIKDKLGGRVRFMGSGASPLSPDVLDFL 431
N M L+ + + D ++ +G G + L P V + L
Sbjct: 175 ----THWTN-----------IVTMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERL 219
Query: 432 KICFGGRVTEGYGMTET-SCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
K G EGYG+TET +C + + D +G P + +++D PE T E+
Sbjct: 220 KALTGLLYEEGYGLTETHTC--THFNPPDRPKPQCLGIPVFGTDARVID-PE---TGEEL 273
Query: 490 PCPR-GEICVRGPLIFKGYYKDEIQTKEV---IDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
P GEI VRGP +FKGY+ T E +D +F TGD+G G +DR K
Sbjct: 274 PPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVK 333
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV--------SVDQD 594
+ G + ++E + + V + V G + A V V ++
Sbjct: 334 RMIN-VSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEE 392
Query: 595 ALKAWA 600
+ W
Sbjct: 393 DIIEWC 398
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 5e-32
Identities = 126/501 (25%), Positives = 193/501 (38%), Gaps = 94/501 (18%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E K +T+ E A V L G+ KG + L N E ++V HA ++V L
Sbjct: 24 EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
L + + + ++ A V+ + L
Sbjct: 84 TRLSREELLWQLDDAEVKCLITDDDFEAKL-----------------------------I 114
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+ ++ L++ + + D+VATI YTSGTTG PKG + ++GN S G+
Sbjct: 115 PGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA 174
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFC 348
L D +++ +P+ HI + + +V G+ V + D K+ + T+
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIIS 234
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
V + R L ERL Y + + ML G P+P
Sbjct: 235 VVSTMLQR--------------LLERLGEGTYPSSFRCMLLGGGPAP------------- 267
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKIC--FGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
L+ C G V + YGMTET+ I L D L+ G
Sbjct: 268 -------------------KPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGS 308
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
G P CE+K+ P GEI V+GP + KGY E T+E +DGWF
Sbjct: 309 AGKPLFPCELKIEK-----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWF 362
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSF 581
TGDIG G L ++DR+ ++ ++ GE I +IE V V + V G D +
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKW 421
Query: 582 NSALVAIV----SVDQDALKA 598
VA V V ++ L+
Sbjct: 422 GQVPVAFVVKSGEVTEEELRH 442
|
Length = 483 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-32
Identities = 104/328 (31%), Positives = 141/328 (42%), Gaps = 78/328 (23%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFYPSDVYISYLPLAHI 309
P DD+A I YTSGTTG KGA+LSHGNL S A TL +F P DV I LP+ H
Sbjct: 152 PRGADDLAAILYTSGTTGRSKGAMLSHGNL-LSNA-LTLVDYWRFTPDDVLIHALPIFHT 209
Query: 310 YERANQVMTVYSGVAVGFYQGDNM----KL-MDDMAALRP--TVFCSVPRLYNRIYAGIT 362
+ + V + VA+ G +M K D + AL P TV VP Y R
Sbjct: 210 HG-----LFVATNVAL--LAGASMIFLPKFDPDAVLALMPRATVMMGVPTFYTR------ 256
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L P R + +R SG++P
Sbjct: 257 ------------------------LLQ----EPRLTR--------EAAAHMRLFISGSAP 280
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
L + + G + E YGMTET+ S +G+ +G VG P +++ D PE
Sbjct: 281 LLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PE- 338
Query: 483 NYTSEDQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
P GEI V+GP +FKGY++ +T E DG+F TGD+G G +
Sbjct: 339 ----TGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVH 394
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAK 567
I+ R K++ + G Y NVY K
Sbjct: 395 IVGRGKDL--IISGGY-------NVYPK 413
|
Length = 504 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-31
Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 72/323 (22%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
DVA + GTTG PK +H + + S + P VY++ LP AH N
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH-----N-- 192
Query: 317 MTVYSGVAVG-FYQGDNMKLMDD---MAAL------RPTVFCSVPRLYNRIYAGITSAVR 366
T+ S +G G + L A + T VP L N
Sbjct: 193 FTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLE------- 245
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
+ WD+ +R + G +PLSP+
Sbjct: 246 ---------------------------AAEWDQADL--------SSLRVIQVGGAPLSPE 270
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH-VGSP-NAACEIKLVDVPEMNY 484
+ ++ G + + +GM E ++LD+ ++ G P + A EI++VD
Sbjct: 271 LARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVDD----- 325
Query: 485 TSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
+ +P P GE+ RGP +GYY+ +DG++ TGD+ G +++
Sbjct: 326 --QGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVV 383
Query: 542 DRKKNIFKLAQGEYIAAEKIENV 564
R K+ GE I+ E+IEN+
Sbjct: 384 GRIKDQINRG-GEKISPEEIENL 405
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 8e-31
Identities = 131/505 (25%), Positives = 218/505 (43%), Gaps = 99/505 (19%)
Query: 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV---PL 168
K +TYGE + + L G++KG+ + + N ++ + A ++ V PL
Sbjct: 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIV--------------- 213
Y P +++ + + +A+ + ++ L++ ++V
Sbjct: 107 YT---PRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVN 163
Query: 214 -VIGGIDDQIP--SLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTT 268
V+ + +P SLP + +++ L++G Q F P K PDDVA + YT GTT
Sbjct: 164 FVVRRVKKMVPAWSLP-----GHVRFNDALAEGAR--QTFKPVKLGPDDVAFLQYTGGTT 216
Query: 269 GTPKGAVLSHGNLIASVA--GATLGTKF--YPSD---VYISYLPLAHIYE-RANQVMTVY 320
G KGA L H N++A+V A L F P ++ LPL HI+ ++ +
Sbjct: 217 GVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMR 276
Query: 321 SGVAVGFYQGDNMKLMD--DMAA----LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+G G N+ + + D+ L+ P AV T
Sbjct: 277 TG-------GRNILIPNPRDIPGFIKELKKYQVHIFP------------AVNT------- 310
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
L+NA N +P +D+L F+K+ GG G + P +L++
Sbjct: 311 LYNALLN------------NPDFDKLDFSKLIVANGG-------GMAVQRPVAERWLEMT 351
Query: 435 FGGRVTEGYGMTETS-CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G +TEGYG++ETS + SG +G P + E+ + D + N +P
Sbjct: 352 -GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP--- 406
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
GEIC+RGP + GY+ +T +V+ DG+F TGD+G+ G KI+DRKK++ L G
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMI-LVSG 465
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG 578
+ +IE V A V + G
Sbjct: 466 FNVYPNEIEEVVASHPGVLEVAAVG 490
|
Length = 557 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 79/295 (26%), Positives = 115/295 (38%), Gaps = 38/295 (12%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A +T GTTG PK A SH N +A+ A L + P DV ++ LPL H
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFH------ 54
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V +G + L P V + ++ R + SAV T
Sbjct: 55 -VGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPT------- 106
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
A Q L + S + R+ +GA+PL +V +
Sbjct: 107 ----VLAALLQVPLGDADISSL-----------------RYALTGAAPLPVEVARRFEAV 145
Query: 435 FGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDV-PEMNYTSEDQPCP 492
G V EGYGMTE + + + G G VG +++ + + P
Sbjct: 146 TGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGE 205
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
G + +RGP +F GY D EDGW +TGD+G G L + R K++
Sbjct: 206 VGVLAIRGPNVFPGYLNDA-HNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDL 259
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 97/474 (20%), Positives = 157/474 (33%), Gaps = 107/474 (22%)
Query: 105 DGTVGEYKWMTYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162
DG G ++ +TYG+ AR + + L G KG + +Y N PE +I A +
Sbjct: 32 DGEDGLFRELTYGDLRREVAR--LANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIG 89
Query: 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI 222
I + L +AV + + + T + L+ D +
Sbjct: 90 AIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF-------RNGKEIALLEDA----DAV 138
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
S + L Y + + + P DD + YTSGTTG PKG V SHG +
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFE-PLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197
Query: 283 ASVAGATL--------GTKFYPSDV-------YISYLPLAH-----IYERANQVMTVYSG 322
+ SD Y + PLA +Y+
Sbjct: 198 VEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR--------- 248
Query: 323 VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382
FY + + + + + T+F + P R+
Sbjct: 249 ---PFYSPERL--WEALEKYKVTIFGTSPTFLRRL------------------------- 278
Query: 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442
K + + S +R +GS PL+P+ ++ G + +
Sbjct: 279 MKLGLGEPYDLSS-----------------LRVLGSAGEPLNPEAFEWFYSALGVWILDI 321
Query: 443 YGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR 499
YG TET I+ +G G P ++ VD E P P GE+ VR
Sbjct: 322 YGQTETGMGFIAGRPPV--KNGSSGLPLPGYAVRRVD-------DEGNPVPPGVGELVVR 372
Query: 500 G--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
P + Y+ D + KE W+ TGD G + R ++ K++
Sbjct: 373 LPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVS 425
|
Length = 528 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-29
Identities = 146/557 (26%), Positives = 227/557 (40%), Gaps = 102/557 (18%)
Query: 74 DHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGL 130
D + T + F +V F D Y G K +TY EA + + L
Sbjct: 20 DLEQFRTVAEVFATSVAKFADRPAYHSFG------------KTITYREADQLVEQFAAYL 67
Query: 131 IYH-GISKGSCIGLYFVNRPEWLIVDHA--CSAYSFISV-PLYDT---------LGPDAV 177
+ + KG + L N ++ I + + ++V PLY G +
Sbjct: 68 LGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL 127
Query: 178 KYIVNHA-SVQAVFC---VPQTLNSLLSCLSEVPTVRLI-VVIGGIDDQIPSLPITTGVQ 232
I N +VQ V V Q + + L + P L+ V+ + +P I ++
Sbjct: 128 VVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIR 187
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+ L+ GR + P +PDD+A + YT GTTG KGA+L+H NL+A++ A L
Sbjct: 188 ---FREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWL 244
Query: 291 GT--KFYP-SDVYISYLPLAHIYE-RANQ-VMTVYSGVAVGFYQGDNMK-LMDDMAALRP 344
K +V I+ LPL HI+ AN V G +M + ++ R
Sbjct: 245 AGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRF 304
Query: 345 TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
T F V L+N L N +P +D++ F+
Sbjct: 305 TAFTGVNTLFNG------------------LLN----------------TPGFDQIDFSS 330
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLS 462
+K LGG + S V + K G + E YG+TETS I+ L + +
Sbjct: 331 LKMTLGGGMAVQRS--------VAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEY-N 381
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVID 519
G +G P + + + D GEI C++GP + KGY+K +T +V+D
Sbjct: 382 GSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD 434
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG- 578
DGW HTGDI G + I+DRKK++ L G + +IE+V A V + G
Sbjct: 435 ADGWLHTGDIARMDEQGFVYIVDRKKDMI-LVSGFNVYPNEIEDVIAMMPGVLEVAAVGV 493
Query: 579 -DSFNSALVAIVSVDQD 594
D + +V +V V +D
Sbjct: 494 PDEKSGEIVKVVIVKKD 510
|
Length = 560 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 87/363 (23%), Positives = 140/363 (38%), Gaps = 97/363 (26%)
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+++L L S P P +PDD A + TSG+TG PK VL+H N++A AG
Sbjct: 143 ALRVLAIEELRSAPP--DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV 200
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM----TVYSG-----VAVGFYQGDNMKLMDDMA 340
F P DV ++++PL H+ VM VY G V + D ++ +D +
Sbjct: 201 QVNGFTPDDVSLNWMPLDHV---GGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLID 257
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
R T+ + P N +A + A+ + WD
Sbjct: 258 RYRVTITWA-P---NFAFALLNDALE------------------------RIEDRSWDL- 288
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVL-DFLKIC--FGGRVT---EGYGMTETSCLIS- 453
+R++ + + + FL++ +G +GM+ET ++
Sbjct: 289 ----------SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTY 338
Query: 454 --QLDEGDNLSGH------------------------VGSPNAACEIKLVDVPEMNYTSE 487
G + G +G P I++VD +
Sbjct: 339 SRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------ED 391
Query: 488 DQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
P GE+ VRGP + GYY++ E EDGWF TGD+G ++ GRL I R+
Sbjct: 392 GALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLG-FLHDGRLTITGRE 450
Query: 545 KNI 547
K++
Sbjct: 451 KDM 453
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 105/448 (23%), Positives = 167/448 (37%), Gaps = 82/448 (18%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV- 192
G+ G + N PE A I+ P+ L P+ + ++ A + + +
Sbjct: 79 GVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLG 137
Query: 193 --PQT--LNSLLSCLSEVPTVRLIVVIGGIDD-------QIPSLPITTGVQILTYSNLLS 241
P T + L+ +P +R +V + +P + +IL + L+
Sbjct: 138 PFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELA 197
Query: 242 QGRSN-LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+ + L P PDDVA +T GTTG PK A +HGN +A+ L P D
Sbjct: 198 RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTV 257
Query: 301 ISYLPLAHIYERANQVM-TVYSGVAVGF-----YQGDNMKLMDD----MAALRPTVFCSV 350
LPL H+ + + G V Y+G ++ + + R V
Sbjct: 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGV 315
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P Y A Q + G + S
Sbjct: 316 P--------------------------TVYAALLQVPVDGHDIS---------------- 333
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPN 469
+R+ GA+PL +V + G R+ EGYG+TE +C+ S +G+ G VG
Sbjct: 334 -SLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRL 392
Query: 470 AACEIKLVDV-PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+++V + Y + G +C+ GP +F GY + K + EDGW +TGD
Sbjct: 393 PYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGD 451
Query: 529 IG-------MWIPGGRLK--IIDRKKNI 547
+G W+ GR K II NI
Sbjct: 452 LGRIDADGYFWLT-GRAKDLIIRGGHNI 478
|
Length = 632 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 61/343 (17%)
Query: 234 LTYSNLLSQGRSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+++ + L +GR +Q P P+D+A + YT GTTG KGA+L+H N++A++ A A
Sbjct: 184 ISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAY 242
Query: 291 GTKFYP-SDVYISYLPLAHIYE-RANQVMTVYSGVAVGFYQGDNMKLMD--DMAALRPTV 346
G +P ++ ++ LPL HI+ N ++ + G G N+ + + D+
Sbjct: 243 GPLLHPGKELVVTALPLYHIFALTVNCLLFIELG-------GQNLLITNPRDIPGF---- 291
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
V L + IT V T LFNA N + + L F+ +K
Sbjct: 292 ---VKELKKYPFTAIT-GVNT-------LFNALLN------------NEEFQELDFSSLK 328
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
+GG + V + G + EGYG+TE S L+S +L + G
Sbjct: 329 LSVGG--------GMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSG 378
Query: 467 S---PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
S P + EIKLVD + N +P GE+ V+GP + GY++ T EVI +DGW
Sbjct: 379 SIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDEVI-KDGW 433
Query: 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566
TGDI + G L+I+DRKK++ L G + +IE+V
Sbjct: 434 LATGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDVVM 475
|
Length = 560 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 14/145 (9%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLSGHVG-- 466
++ +GSGA+PL ++ + + F G + +GYGMTE+S + + + E D G VG
Sbjct: 276 SLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRL 335
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
PN E K+VD PE T E P P GE+ VRGP + KGY + T E ID+DGW
Sbjct: 336 VPNV--EAKIVD-PE---TGESLP-PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWL 388
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFK 549
HTGD+G + G L I+DR K + K
Sbjct: 389 HTGDLGYFDEDGYLFIVDRLKELIK 413
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 109/464 (23%), Positives = 170/464 (36%), Gaps = 127/464 (27%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI-----VDHACSAYSF 163
GE++ +TY EA + L+ G+S RP +I ++HA A +
Sbjct: 21 GEWRRVTYAEALRQVRAIAQALLDLGLSAE---------RP-LMILSGNSIEHALLALAA 70
Query: 164 ISV--------PLYDTLGPD--AVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRL 211
+ P Y L D +++I + + AVF +L + + V +
Sbjct: 71 MYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAAL--GLAGVPV 128
Query: 212 IVVIGGIDDQIPSL------PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ V G + P T V F+ PD VA +TS
Sbjct: 129 VAVRGAPGGPAIAFAALLATPPTAAVD---------------AAFAAVGPDTVAKYLFTS 173
Query: 266 GTTGTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSG 322
G+TG PK + +H L A+ A V + +LP H + N M +Y+G
Sbjct: 174 GSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNG 233
Query: 323 VAVGFYQGDNMK----LMDDMAA-LR---PTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G D+ K L ++ LR PTV+ +VP+ + + A+ LR R
Sbjct: 234 ---GTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEM----LVDALERDAALRRR 286
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL--- 431
F R+R + + L DV D L
Sbjct: 287 FF----------------------------------KRLRLLFYAGAALPQDVWDRLQAL 312
Query: 432 --KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ G R+ T G G TET+ + + + SG +G P E+KLV
Sbjct: 313 AVRTT-GERIPMTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV---------- 361
Query: 488 DQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
P G E+ V+GP + GY++D T E DE+G++ GD
Sbjct: 362 ----PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 7e-27
Identities = 118/480 (24%), Positives = 190/480 (39%), Gaps = 84/480 (17%)
Query: 122 ARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
R +G+++ GI +G + L N +L + A S + +P+ L D V YI
Sbjct: 35 QRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYI 94
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+ A + + V + +++ V +VI S L
Sbjct: 95 LGDAGAKLLL-VDEEFDAI------VALETPKIVIDAAAQA--------------DSRRL 133
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+QG + P + P D+ + YTSGTT PKG + S+GNL + S+
Sbjct: 134 AQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERL 193
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
+ PL H+ G+AV + G +++ + V ++ R
Sbjct: 194 LVVGPLYHVGAFD------LPGIAV-LWVGGTLRIHREFDP--EAVLAAIER-------- 236
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
RL A+ A MLS P DR + + +GG G
Sbjct: 237 ------------HRL-TCAWMAP--VMLSRVLTVPDRDRFDLDSLAWCIGG-------GE 274
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVD 478
+ DF ++ R + YG+TET + ++ G + G G A EI++ D
Sbjct: 275 KTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD 334
Query: 479 ------VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
P M GEIC+RGP + KGY+KD +T E WF +GD+G
Sbjct: 335 GAGRWLPPNMK----------GEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYL 383
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV 589
G L + DRKK++ ++ GE IA+ ++E V + V + V G D + + A+V
Sbjct: 384 DEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
|
Length = 497 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-26
Identities = 103/462 (22%), Positives = 164/462 (35%), Gaps = 80/462 (17%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TYGE G+ L GI + + + L ++ PE+ + VP+ L P
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
D +Y +N + + + + L L + P +R ++V+G + P L
Sbjct: 92 DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVG------GAGPGA-----L 140
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATLG 291
+Y+ L++ L+ + DD+A Y+SG+TG PKG V H +++ + A LG
Sbjct: 141 SYAQLIATAAEELEA-AATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 292 TKFYPSDVYISYLPLAHIYERANQV-MTVYSGVAVGFYQG----DNMKLMDDMAALRPTV 346
DV S L Y N + + G D + + +PTV
Sbjct: 200 IT--EDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAV--FATIERYKPTV 255
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
F VP LY AML+
Sbjct: 256 FFGVPTLYA------------------------------AMLAAPEKPERDLS------- 278
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465
+R S L ++ K FG + +G G TE + +S G G
Sbjct: 279 -----SLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNR-PGAVKYGTS 332
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDG 522
G P E+KLVD + + GEI VRG GY+ +T+E
Sbjct: 333 GKPVPGYEVKLVD-------EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGE 384
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
W TGD G R ++ K G +++ ++E+
Sbjct: 385 WTRTGDKYYRDEDGYYWYCGRSDDMLK-VSGIWVSPFEVEDA 425
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 110/471 (23%), Positives = 170/471 (36%), Gaps = 99/471 (21%)
Query: 139 SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS 198
I L N +W+I D AC + +P+ ++++N A +
Sbjct: 25 KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLIS------- 77
Query: 199 LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDV 258
DD + + T L ++ S P
Sbjct: 78 --------------------DDPDAASALHTPFATLGEDLYIALRPS---ANPVELPAGT 114
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
A I YTSG+TG PKG LS L S+A A + + ++ LPLA + E
Sbjct: 115 AKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILE---PERHLCLLPLATLLENIAG 171
Query: 316 V-MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V + G V + L + L P F A ++ S L +
Sbjct: 172 VYAPLLMGATVILVPLAELGLSGS-SGLDPAQFV----------AALSRWQPHSLILVPQ 220
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL---DFL 431
L A A +Q L +RF+ G + +SP +L L
Sbjct: 221 LLMALVAAVEQGPL--------------------PPESLRFVAVGGARVSPSLLQRARAL 260
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ V EGYG++E + ++S G + G VG P ++ + + D
Sbjct: 261 GL----PVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI---------AND--- 304
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI VRG L GY + T D W+ TGD+G G L I RKKN+ +
Sbjct: 305 --GEILVRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITS 355
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVS-VDQDALKAW 599
G ++ E +E+ + + Q V+GD+ F AL+ + D L+A
Sbjct: 356 FGRNVSPEWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-26
Identities = 103/384 (26%), Positives = 154/384 (40%), Gaps = 100/384 (26%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A I ++SG+TG PKG +L+H NL+ ++ + DV++S++PL H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH------ 158
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY----NRIYAGITSAVRTSGG 370
M + G N LM +F P L+ ++ A I S+
Sbjct: 159 -DMGLIGFHLTPTALGINQYLMP------TRLFIRRPLLWLDKASQHRATILSSP----- 206
Query: 371 LRERLFNAAYNAKKQAMLS--GKNPSPMWD----RLVFNKIKDKLGGRVRFMGSGASPLS 424
N Y + +L WD RL+FN GA P+S
Sbjct: 207 ------NFGY----KYLLKHFKTEKIIDWDLSSVRLIFN---------------GAEPIS 241
Query: 425 PDV-LDFLKIC--FGGR---VTEGYGMTETSCLIS------------------------- 453
D+ +FL+ FG R + YG+ E + +S
Sbjct: 242 ADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKII 301
Query: 454 QLDEGDNLSG---HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
++D ++ + VGSP CEI++VD + D+ G I ++G + GYY +
Sbjct: 302 EIDPKNSDAISFVEVGSPIDGCEIRIVD--DAGEVLPDRTI--GHIQIKGDNVTSGYYNN 357
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN-IFKLAQGEYIAAEKIENVYAK-- 567
TK+ I DGW TGD+G ++ GRL I R K+ I Q Y IE V +
Sbjct: 358 PEATKKSITPDGWLKTGDLG-FLRNGRLVITGRAKDIIIVNGQNYY--PHDIERVAEQVE 414
Query: 568 -CKF--VGQCFVYGDSFNSALVAI 588
K V C VY + S V I
Sbjct: 415 GIKLGRVAACGVYDEKEQSEEVVI 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 85/370 (22%), Positives = 124/370 (33%), Gaps = 87/370 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP----LAHIY 310
PDD+A I +TSG+TG PKG +SH NL + + DV+ + P L+
Sbjct: 96 PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLS--- 152
Query: 311 ERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
V ++ +A G D + L + + TV+ SVP
Sbjct: 153 -----VFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVP--------SFA 199
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
S + S L PS R F G
Sbjct: 200 SLLLLSRELNPESL----------------PSL---RTFL------------FCGE---V 225
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTET--SCLISQLDE---GDNLSGHVGSPNAACEIKL 476
L + L+ F R+ YG TE + ++ N +G P +
Sbjct: 226 LPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALI 285
Query: 477 VDVPEMNYTSEDQ----PCPRGEICVRGPLIFKGYYKDEIQTKEVIDED---GWFHTGDI 529
+D ED P GE+ + GP + GY + +T + +D W+ TGD+
Sbjct: 286 LD--------EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV---YGDSFNSALV 586
G L + RK KL G I E+IE V + V LV
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLV 396
Query: 587 AIVSVDQDAL 596
A V + AL
Sbjct: 397 AFVVGKEGAL 406
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 6e-26
Identities = 136/511 (26%), Positives = 210/511 (41%), Gaps = 89/511 (17%)
Query: 75 HPEIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133
HP + D + AV F + + G +D + G ++Y E + +GL YH
Sbjct: 29 HPPVPLPSDPNLDAVSFIFSHHNHNGDTALIDSSTGFS--ISYSELQPLVKSMAAGL-YH 85
Query: 134 --GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
G+ +G + L N + ++ A + I + + +K V SV F
Sbjct: 86 VMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFT 145
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
P+ + L VP + + D + P + L+ + P
Sbjct: 146 SPENVEKLSPL--GVPVI-GVPENYDFDSKRIEFP--------KFYELIK-EDFDFVPKP 193
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF------YPS--DVYISY 303
K DDVA I Y+SGTTG KG VL+H NLIA V L +F YP +VY++
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVE---LFVRFEASQYEYPGSDNVYLAA 250
Query: 304 LPLAHIYERANQVMTVYS-GVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
LP+ HIY + V+ + S G + F D +K++D + T F VP I
Sbjct: 251 LPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVID---RFKVTHFPVVPP----IL 303
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
+T + G V +K +
Sbjct: 304 MALTKKAKGVCGE-----------------------------VLKSLKQ--------VSC 326
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VG--SPNAACE 473
GA+PLS + DF++ +GYGMTE++ + ++ + LS + VG +PN +
Sbjct: 327 GAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNM--Q 384
Query: 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
K+VD + P GE+ ++GP + KGY + T+ ID+DGW TGDI +
Sbjct: 385 AKVVD---WSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFD 441
Query: 534 PGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G L I+DR K I K +G IA +E V
Sbjct: 442 EDGYLYIVDRLKEIIKY-KGFQIAPADLEAV 471
|
Length = 560 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 76/299 (25%), Positives = 121/299 (40%), Gaps = 75/299 (25%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSD--VYISYLPLAHIY 310
PD +A +TSG+TG PK + +H L A+ T F + V + +LP H +
Sbjct: 208 PDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP--FLAEEPPVLVDWLPWNHTF 265
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMK----LMDDM-AALR---PTVFCSVPRLYNRIYAGI 361
N + +Y+G G D+ K D+ LR PTV+ +VP+ + +
Sbjct: 266 GGNHNLGIVLYNG---GTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKG----WEML 318
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
A+ LR R F R++ + +
Sbjct: 319 VPALERDAALRRRFF----------------------------------SRLKLLFYAGA 344
Query: 422 PLSPDVLDFL-----KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474
LS DV D L C G R+ G GMTET+ + + +G++G P CE+
Sbjct: 345 ALSQDVWDRLDRVAEATC-GERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEV 403
Query: 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
KLV V + E+ V+GP + GY++ T E DE+G++ +GD ++
Sbjct: 404 KLVPV-------GG----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451
|
Length = 614 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 122/487 (25%), Positives = 195/487 (40%), Gaps = 87/487 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y + ++ L G+ G + L + E+++ A S + VPL D
Sbjct: 44 ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPAL 102
Query: 174 PDAVKYI-VNHASVQAVFCVPQTLNSLLSCLSEVPTVR---LIVVIGGIDDQIPSLPITT 229
P A + + A + V +++ PT R L V +GG
Sbjct: 103 PIAEQRVRSQAAGARVVL-----IDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVH 157
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
L + + S + +PDD A I +T GTTG PK +H N+ +SV
Sbjct: 158 ----LDAATEPTPATSTPEGL---RPDD-AMIMFTGGTTGLPKMVPWTHANIASSVRAII 209
Query: 290 LGTKFYPSDVYISYLPLAHIYER-ANQVMTVYSGVAV-----GFYQGDNMKLMDDMAALR 343
G + P D ++ +PL H + A + T+ SG AV G + DD+ A+
Sbjct: 210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHT--FWDDIKAVG 267
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + +VP ++ +I L ER A + SG+ P+ +
Sbjct: 268 ATWYTAVPTIH-QI-------------LLER-------AATEP--SGRKPAAL------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCLISQLDEG 458
RF+ S ++PL+ + L+ F V +GMTE T+ I + +
Sbjct: 298 ----------RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT 347
Query: 459 DN---LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEI 512
+N +G VG A +I++V S+ P P GE+ +RG + +GY D
Sbjct: 348 ENPVVSTGLVGRSTGA-QIRIVG-------SDGLPLPAGAVGEVWLRGTTVVRGYLGDPT 399
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG 572
T DGW TGD+G G L I R K + GE I+ E++E V A V
Sbjct: 400 ITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVM 457
Query: 573 QCFVYGD 579
+ V+G
Sbjct: 458 EAAVFGV 464
|
Length = 534 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-25
Identities = 95/334 (28%), Positives = 131/334 (39%), Gaps = 69/334 (20%)
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
RS + P PD A I YTSGTTG PKG VLS + A + ++ DV +
Sbjct: 116 ARSWHRYPEPD-PDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVH 174
Query: 303 YLPLAHIY----------ERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPR 352
LPL H++ N+ + + Q + T++ VP
Sbjct: 175 GLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPT 225
Query: 353 LYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR 412
+++RI A +A G RL LV
Sbjct: 226 VWSRIAADPEAARALRGA---RL------------------------LV----------- 247
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
SG++ L V D L G R E YGMTET +S +G+ G VG P A
Sbjct: 248 -----SGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGV 302
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +LVD + + GE+ VRGP +F GY T DGWF TGD+ +
Sbjct: 303 ETRLVDEDGGPVPHDGETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360
Query: 533 IPGGRLKIIDRKK-NIFKLAQGEY-IAAEKIENV 564
P G +I+ R+ ++ K G Y I A +IE
Sbjct: 361 DPDGMHRIVGRESTDLIK--SGGYRIGAGEIETA 392
|
Length = 471 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 82/380 (21%), Positives = 132/380 (34%), Gaps = 91/380 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFY----PSDVYISYLPLA 307
DD+A I YTSG+TG PKG +LSH NL A S+A Y D ++ LP +
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQ-------YLELTEDDRILAVLPFS 53
Query: 308 HIYERANQVMTVYSG--VAVGF---YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
Y + + G + + + D ++ +A R T F VP +
Sbjct: 54 FDYGLSQLLTAFRVGGTLVLESRFAFPRD---VLKHLAKERITGFAGVPTTW-------- 102
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L + +R++ +
Sbjct: 103 ----------------------AQLLRLDPLARE------------DFPSLRYLTNAGGA 128
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTE-TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
L + L+ F ++ YG+TE +E D +G E+ +VD
Sbjct: 129 LPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVD-- 186
Query: 481 EMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDE-----DGWFHTGDIGMW 532
+ C GE+ RG + KGY+ D T E + + +TGD+
Sbjct: 187 -----EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRM 241
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV 589
G L + RK ++ K G ++ +IE V V + V G A+VA+V
Sbjct: 242 DEEGYLYFVGRKDDMIKTR-GYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVV 300
Query: 590 ------SVDQDALKAWAASE 603
S+D+ L
Sbjct: 301 VSADGESLDEKELLKHCRKH 320
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 104/486 (21%), Positives = 158/486 (32%), Gaps = 134/486 (27%)
Query: 115 TYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
TY E R + L G+S G + L + PE + AC ++V L L
Sbjct: 12 TYRELHDLANRF--ANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P +++I +DD +L +T
Sbjct: 70 TPQDLEHI-------------------------------------LDDSGAALLVT---- 88
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGAT 289
+ DD+A YTSGTTG PKG + H + + A
Sbjct: 89 ---------------------EADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFAREL 127
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTV 346
LG + P D S L Y N ++ ++SG + G ++D +A RPTV
Sbjct: 128 LGLQ--PGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTV 185
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP LY A+ SG LF
Sbjct: 186 LFGVPALYR--------ALLESGAGSAPLF------------------------------ 207
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
VR S L + + G + +G G TE + G G G
Sbjct: 208 ----RSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTG 263
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
P E +LVD G++ VRGP + GY+ +T+ + DGW T
Sbjct: 264 RPVPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRT 318
Query: 527 GDI------GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
GD G + GR ++ K++ G++++ ++E + V + V
Sbjct: 319 GDRFSRDADGWYRYQGRA------DDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVP 371
Query: 581 FNSALV 586
LV
Sbjct: 372 DEDGLV 377
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-24
Identities = 99/416 (23%), Positives = 160/416 (38%), Gaps = 83/416 (19%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L ++ +++ H + + + L+ +P + +V ID P P +
Sbjct: 102 LDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV----IDVDDPEYPGGRFI 157
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATL 290
L Y L+ G + P D + YTSGTTG PKG V H G + +++ L
Sbjct: 158 GALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-IL 216
Query: 291 GTKFYPSDVYISYLPLAHIYERANQ-----VMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
VY+ LP+ H N + +G V + D + D + T
Sbjct: 217 AWGMPKHPVYLWTLPMFH----CNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVT 272
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
+C P + + A NA +
Sbjct: 273 HYCGAPIVLS----------------------ALINAPAEW------------------- 291
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET---SCLISQLDEGDNLS 462
+ + V M +GA+P V+ ++ G +T YG+TET + + + E D L
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349
Query: 463 --------GHVGSPNAACE-IKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYY 508
G E + ++D M QP P GEI RG ++ KGY
Sbjct: 350 LDERAQLKARQGVRYPLQEGVTVLDPDTM------QPVPADGETIGEIMFRGNIVMKGYL 403
Query: 509 KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
K+ T+E GWFHTGD+ + P G +KI DR K+I ++ GE I++ ++E+V
Sbjct: 404 KNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENISSIEVEDV 457
|
Length = 545 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 93/351 (26%), Positives = 127/351 (36%), Gaps = 88/351 (25%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A YTSGTTG PK A++SH + + A P DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHS------- 134
Query: 317 MTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ G + G ++ L D+ T F V L
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL-------------- 180
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM-GSGASPLSPD 426
R L N P DR +R + G+G L PD
Sbjct: 181 ---CR-YLLNQ--------------PEKPDDR----------DHPLRKIIGNG---LRPD 209
Query: 427 VLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SPNAACEIKLVDV----P 480
+ D K FG R+ E YG TE + L N G VG P AA + DV P
Sbjct: 210 IWDEFKERFGVPRIVEFYGSTEGNVGFINLF---NKPGAVGRLPPAAIAVVKYDVETEEP 266
Query: 481 EMNYTSEDQPCPRGEICVRGPLI--------FKGYYKDEIQTKEVI-----DEDGWFHTG 527
+ P GE+ G L+ F GY DE K+++ D +F+TG
Sbjct: 267 IRDANGFCIKVPPGEV---GLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTG 323
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D+ G +DR + F+ +GE ++ ++E V AK V + VYG
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEEANVYG 373
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-23
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 63/335 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
P+ V+ I +TSGT+G PKG +LS NL + + + ++ P+ HI
Sbjct: 134 PERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLIT 193
Query: 315 QVMTVYSG-----VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
V V + V+ GF + + D A L T + VP++ A R
Sbjct: 194 SVRPVLAVGGSILVSNGFEPKRTLGRLGDPA-LGITHYFCVPQM--------AQAFRAQP 244
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
G F+AA A+ +G P + D+L
Sbjct: 245 G-----FDAAALRHLTALFTGGAPHA----------------------------AEDILG 271
Query: 430 FLKICFGGRVTEGYGMTETSCLISQ-LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS 486
+L G + +G+GM+E + +D +G G P + ++VD
Sbjct: 272 WLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-------D 322
Query: 487 EDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ CP G E+ +RGP + GY++ T DGWF TGDI G ++DR
Sbjct: 323 QGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDR 382
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
KK++F ++ GE + +IE V A + +C V G
Sbjct: 383 KKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416
|
Length = 488 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-23
Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 54/318 (16%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERAN 314
D+ + ++SGTTG KG +L+H NL+A++ + ++G + V + +P HI
Sbjct: 185 DLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHI----- 239
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
Y + N + M+ F + A IT V + +
Sbjct: 240 -----YGITGICCATLRNKGKVVVMSRFELRTF---------LNALITQEVSFAPIVPPI 285
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
+ N N P+ + +K+K ++ + + A+PL+P++L +
Sbjct: 286 ILNLVKN-------------PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAK 326
Query: 435 FGG-RVTEGYGMTETSCLISQLDEGDNLSGH-------VGSPNAACEIKLVDVPEMNYTS 486
F G +V E YG+TE SC+ L GD GH VG E+K +D
Sbjct: 327 FPGVQVQEAYGLTEHSCI--TLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP 384
Query: 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
++ P GE+CVR + +GYY ++ +T IDEDGW HTGDIG G + I+DR K
Sbjct: 385 KNTP---GELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKE 441
Query: 547 IFKLAQGEYIAAEKIENV 564
+ K +G +A ++E +
Sbjct: 442 LIKY-KGFQVAPAELEAI 458
|
Length = 546 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA----YSFISVPLY 169
+T+ + + GL G+ +G + L N E+ V C A S + P Y
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN-PSY 69
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
PD + + + + + +FC P L+ + E+ V I+V+ D +
Sbjct: 70 T---PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLR----- 121
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVA 286
++ L L ++ DD A + Y+SGTTG PKG +LSH N+IA V
Sbjct: 122 -IEDLLEPRLGAED-EFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179
Query: 287 GATLGTKFYPSDVYISYLPLAHIY 310
G +DV +++LP H Y
Sbjct: 180 DTLKGNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 84/393 (21%), Positives = 144/393 (36%), Gaps = 81/393 (20%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
RL++ + ++ L + + L + P +P PDD+A + YTSG+T
Sbjct: 73 ARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGST 132
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH---IYERANQVMTVYSG--- 322
G PKG V++H +L+ +A P D + + L+ + E + +G
Sbjct: 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE---IFGALLAGATL 189
Query: 323 -VAVGFYQGDNMKLMDDMAALRP-TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
V + D+ L+ + A P TV P L + A
Sbjct: 190 VVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAA--------------------- 228
Query: 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRV 439
A A+ S +R + G L+P ++D + G R+
Sbjct: 229 -ALPPALAS-----------------------LRLVILGGEALTPALVDRWRARGPGARL 264
Query: 440 TEGYGMTETSC-----LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
YG TET+ L+ D +G P A + ++D + +P P
Sbjct: 265 INLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLD-------DDLRPVPVG 317
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ + GP + +GY T E D + TGD+ ++P G L+ + R
Sbjct: 318 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGR 377
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
+ K+ +G I +IE + V + V
Sbjct: 378 IDDQVKI-RGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 92/361 (25%), Positives = 133/361 (36%), Gaps = 81/361 (22%)
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAG-AT 289
LT L + + PDD IC+TSGTTG PKG +SH LI S+A A
Sbjct: 148 SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAI 207
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL-MDDMAALRPTVFC 348
+G + DVY+ PL HI ++ + + G + K + + T
Sbjct: 208 VG--YGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMI 265
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
+VP + A + S R S K
Sbjct: 266 TVP----AMMADLISLTRKSMT------------------------------------WK 285
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTET-----------------SC 450
+ VR + +G LS +L K F ++ YGMTE
Sbjct: 286 VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQ 345
Query: 451 LISQLDEGDNLSGH------VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIF 504
+ +++ + S H VG P E+K+ D+ G I RGP +
Sbjct: 346 TLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI---------GLDESSRVGRILTRGPHVM 396
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
GY+ +T V+ DGW TGDIG WI G L +I R + K GE + E++E
Sbjct: 397 LGYWGQNSETASVLSNDGWLDTGDIG-WIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEA 454
Query: 564 V 564
V
Sbjct: 455 V 455
|
Length = 563 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 3e-21
Identities = 94/335 (28%), Positives = 145/335 (43%), Gaps = 58/335 (17%)
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
P PI +I+TY++ + +G + + PDDVA + YT GTTG PKGA+L+HGNL
Sbjct: 160 PQAPIPADPRIVTYADFV-KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 283 ASVA-----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYS---GVAVGFYQG-DNM 333
++V+ G + I LPL HIY A V+ + S G + +Q D
Sbjct: 219 SAVSIYDVWGKPSRATRGDVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVA 276
Query: 334 KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393
+ D+ R TVF VP ++ A+ L +R ++
Sbjct: 277 AVFRDIEEKRATVFPGVPTMW--------IALANDPSLEKRDLSSLATI----------- 317
Query: 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLI 452
GSG +PL +V +F + G ++ G+GMTET S
Sbjct: 318 -----------------------GSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT 354
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512
EG + G +G E+ +V + + T P GE+ +RGP + +GY+
Sbjct: 355 GHPPEGPDKPGSIGLMLPGIELDVVSLDDP--TKVLPPGEVGELRIRGPNVTRGYWNRPE 412
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
++ E F TGDIG G ++DRKK++
Sbjct: 413 ESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDM 446
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-20
Identities = 120/513 (23%), Positives = 202/513 (39%), Gaps = 86/513 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY + SGL G+++G + +Y R E + + + VP+ L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ V +I+ +V+ + + L+ L L +R ++++G P G +
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATL 290
++ LL+ G + P P D+A I YTSG+TG PKG VLSH NL+A SVA
Sbjct: 143 ASWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATY-- 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ P D ++ LPL+ Y NQ+ T FY G + L D + +
Sbjct: 199 -LENRPDDRLLAVLPLSFDYGF-NQLTT-------AFYVGATVVLHDYL----------L 239
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR + A+ + + A A+ P+W +L +
Sbjct: 240 PR-------DVLKALE-----KHGITGLA------AV------PPLWAQLAQLDWPESAA 275
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLD--EGDNLSGHVGS 467
+R++ + + L L+ R+ YG+TE + + L E D +G
Sbjct: 276 PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE-AFRSTYLPPEEVDRRPDSIGK 334
Query: 468 --PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
PNA E+ ++ SE P GE+ RG L+ GY+ D +T E F
Sbjct: 335 AIPNA--EVLVLR----EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFP 388
Query: 526 -----------TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQC 574
+GD G L + R+ + K + G ++ ++E V V +
Sbjct: 389 GELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEVEEVAYATGLVAEA 447
Query: 575 FVYG---DSFNSALVAIV------SVDQDALKA 598
+G + A+V +V +D+ AL A
Sbjct: 448 VAFGVPDPTLGQAIVLVVTPPGGEELDRAALLA 480
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 2e-20
Identities = 89/332 (26%), Positives = 150/332 (45%), Gaps = 60/332 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHIY 310
+D+A + YT GTTG PKG +L+H NL V+ +G ++ +V + LP H+Y
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
A +++ G + +MK++ + + + T+F P +Y
Sbjct: 263 GMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIY-------------- 308
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
A+L+ SP+ +K+ +R SG++PL +V
Sbjct: 309 ----------------IALLN----SPL--------LKEYDISSIRACISGSAPLPVEVQ 340
Query: 429 DFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + GG++ EGYG+TE+S + S + G +G P E ++ + T E
Sbjct: 341 EKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLE----TGE 396
Query: 488 D-QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
P GEI V+GP I KGY+ +T V+ +DGW HTGD+G G + DRKK+
Sbjct: 397 ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKD 455
Query: 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ +A G + ++E V + + V + G
Sbjct: 456 MI-VASGFNVYPREVEEVLYEHEKVQEVVTIG 486
|
Length = 563 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-20
Identities = 117/480 (24%), Positives = 170/480 (35%), Gaps = 86/480 (17%)
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL-YDT 171
TY EA A L G+ +G + L NR E+L V C+ I+VP+
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105
Query: 172 LGPDAVKYIVNHAS----VQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
GP + N + V+A L + +P V L+ D S+ +
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALL--AALEAADPGDLPLPAVWLL-------DAPASVSV 156
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL----IA 283
G L P + +P D A I YTSGTTG KG H
Sbjct: 157 PAGWSTAPLPPL-----DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN 211
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALR 343
S +G DV + LPL H N + F+Q A L
Sbjct: 212 SAEDLEIG----ADDVLYTTLPLFHT----NALNA--------FFQ----------ALLA 245
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
+ PR +G AVR G L A + +L +
Sbjct: 246 GATYVLEPRFSA---SGFWPAVRRHGATVTYLLGAMVS-----ILLSQPARE-------- 289
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
RVR P + + FG + +GYG TET+ +I+ + G G
Sbjct: 290 ---SDRAHRVRVALGPGVP--AALHAAFRERFGVDLLDGYGSTETNFVIA-VTHGSQRPG 343
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG--PLIF-KGYYKDEIQTKEV 517
+G E ++VD DQ P GE+ +R P F GY+ +T E
Sbjct: 344 SMGRLAPGFEARVVD-------EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY 577
+ WFHTGD + G + +DR K+ + +GE I++ ++E V V V+
Sbjct: 397 W-RNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLSHPAVAAAAVF 454
|
Length = 542 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 3e-20
Identities = 51/124 (41%), Positives = 64/124 (51%), Gaps = 20/124 (16%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLS---GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-- 493
VT YGMTETS + +Q D L VG E+K+VD PE + PR
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-----ETVPRGE 397
Query: 494 -GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG-MWIPG-----GRLK--IIDRK 544
GE+C RG + KGY+ D +T E ID DGW HTGD+ M G GR+K II
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGG 457
Query: 545 KNIF 548
+NI+
Sbjct: 458 ENIY 461
|
Length = 559 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-19
Identities = 102/394 (25%), Positives = 156/394 (39%), Gaps = 96/394 (24%)
Query: 213 VVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGT 270
VV+G + G+++LT ++LL+ P P + DD+A + TSG+TG+
Sbjct: 112 VVVGEPFLAAAPVLEEKGIRVLTVADLLAAD-----PIDPVETGEDDLALMQLTSGSTGS 166
Query: 271 PKGAVLSHGNLIASVAGATLGTKFYP-SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ 329
PK ++HGNL A+ + +F +DV +S+LPL H M + + V Y
Sbjct: 167 PKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD-------MGMVGFLTVPMYF 219
Query: 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389
G + + M LR + L ++ +T+A N AY A+L+
Sbjct: 220 GAELVKVTPMDFLRDPL--LWAELISKYRGTMTAAP-----------NFAY-----ALLA 261
Query: 390 GKNPSPMWDRLVFNKIKDKLGGR-----VRFMGSGASPLSPDVL-DFLKIC--FGGR--- 438
R + + K G +RF +GA P+ P + D L FG R
Sbjct: 262 ---------RRLRRQAKP---GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEA 309
Query: 439 VTEGYGMTETSCLIS--QLDEG--------DNLS----------GHV------GSPNAAC 472
+ YGM E + +S G D L+ G+ G P
Sbjct: 310 ILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL 369
Query: 473 EIKLVDVPEMNYTSED-QPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ED Q P G I +RG + G Y D DGW TGD
Sbjct: 370 EVRVVD--------EDGQVLPPRGVGVIELRGESVTPG-YLTMDGFIPAQDADGWLDTGD 420
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
+G G + + R K++ +A G I IE
Sbjct: 421 LGYLTEEGEVVVCGRVKDVIIMA-GRNIYPTDIE 453
|
Length = 545 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-19
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 436 GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G + EGYG+TETS + S G L+ G VG P +K++D + +E R
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID----DDGNELPLGER 412
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
GE+C++GP + KGY++ T E +D +GWF TGDI + P G ++I+DRKK++ + G
Sbjct: 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLI-IVSG 471
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG 578
+ +IE+V V C G
Sbjct: 472 FNVYPNEIEDVVMAHPKVANCAAIG 496
|
Length = 562 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-19
Identities = 103/420 (24%), Positives = 165/420 (39%), Gaps = 94/420 (22%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLPITTG 230
L P+ + YIVNHA + T L+ L+ + P V+ V + LP +
Sbjct: 98 LFPEQIAYIVNHAEDR-YVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA----HLPAGS- 151
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDD--VATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+L Y L+ + + P+ D+ +++CYTSGTTG PKGA+ SH + + GA
Sbjct: 152 TPLLCYETLVGAQDGD---YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGA 208
Query: 289 TLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVG---FYQG---DNMKLMDDMA 340
L S D + +P+ H+ N YS G G D L + +
Sbjct: 209 ALPDAMGLSARDAVLPVVPMFHV----NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIE 264
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
A R T VP ++ G+ + +R GLR R
Sbjct: 265 AERVTFSAGVPT----VWLGLLNHMR-EAGLRFSTLR---------------------RT 298
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-------IS 453
V +G A P P ++ + +G V +GMTE S L
Sbjct: 299 V--------------IGGSACP--PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWK 342
Query: 454 QLDEGDNLSGHV----GSPNAACEIKLVDVPEMNYTSEDQPCP-----RGEICVRGPLIF 504
+ + G ++K+V + + P G++ VRGP +
Sbjct: 343 HSQLPLDEQRKLLEKQGRVIYGVDMKIVG-------DDGRELPWDGKAFGDLQVRGPWVI 395
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
Y++ + ++D GWF TGD+ G ++I DR K++ K + GE+I++ IENV
Sbjct: 396 DRYFRGD--ASPLVD--GWFPTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIENV 450
|
Length = 539 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 5e-19
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 39/192 (20%)
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV------GSPNAA 471
GASP+SP L + ++ FG + YG TE +I+ L + D+ G P
Sbjct: 289 GASPMSPVRLAEAIER-FGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+ L+D + + + GEICVRGPL+ GY+ +T E DGW HTGD
Sbjct: 348 LRVALLD-------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD 399
Query: 529 IGMWIPGGRLKIIDRKK--------NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG-- 578
+ G I+DRKK N+F ++E+V A+ V Q V G
Sbjct: 400 VAREDEDGFYYIVDRKKDMIVTGGFNVF---------PREVEDVLAEHPAVAQVAVIGVP 450
Query: 579 -DSFNSALVAIV 589
+ + A+ A+V
Sbjct: 451 DEKWGEAVTAVV 462
|
Length = 524 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-18
Identities = 89/465 (19%), Positives = 145/465 (31%), Gaps = 82/465 (17%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
V + +TY E + LI G+ G + + E ++ A VP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
L + + YI+ + + L L + +DD + +P
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLT-QAHLRVDDVGLPGLA----------LDDALSEIPD 355
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SV 285
T + D +A I YTSG+TG PKG + H L +
Sbjct: 356 TDPIPQAL------------------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 286 AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
AGA G D ++ L+ V ++ + G + L + + P
Sbjct: 398 AGARFGLD--ADDRVLALASLSFDAS----VFEIFGALLEGAR----LVLAPALLQVDPA 447
Query: 346 VFCSVPRLYNRI-YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
L + GIT + LR L A R +
Sbjct: 448 ------ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI--------SPCERLRQLL-- 491
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLS 462
GG A PL+ R+ YG TE + +
Sbjct: 492 ----SGGE-------ALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESR 540
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVID 519
+G P A ++ ++D +P P GE+ + G + GY T E
Sbjct: 541 VPIGRPVANTQLYILD-------QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI 593
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+ TGD+ + G L+ + RK + K+ +G I +IE
Sbjct: 594 ALRLYRTGDLARPLADGALEYLGRKDSQVKI-RGFRIELGEIEAA 637
|
Length = 642 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 2e-18
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI+ +G N E L V A + + PL L D + +I+NHA + + P
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP 253
+ L L E P VR +V IG D + + G+++ +Y LL GRS + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDWPEL 178
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL 281
A ICY++GTTG PKG V SH +L
Sbjct: 179 DETTAAAICYSTGTTGAPKGVVYSHRSL 206
|
Length = 576 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 5e-18
Identities = 106/368 (28%), Positives = 161/368 (43%), Gaps = 60/368 (16%)
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC--YTSGTT 268
L++VIG SL G + Y L G + PP D+ +I YTSGTT
Sbjct: 150 LLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF-AWKPPA-DEWQSIALGYTSGTT 207
Query: 269 GTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGF 327
+PKG VL H G + +++ A L VY+ LP+ H N ++
Sbjct: 208 ASPKGVVLHHRGAYLMALSNA-LIWGMNEGAVYLWTLPMFH----CNGWCFTWT------ 256
Query: 328 YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387
+AAL T C IY+ I + T + N NA K
Sbjct: 257 -----------LAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET 305
Query: 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE 447
+ P P R+V M +GA+P P VL + G RVT YG++E
Sbjct: 306 IL---PLP---RVV------------HVMTAGAAP-PPSVLFAMSE-KGFRVTHTYGLSE 345
Query: 448 T---SCLISQLDEGDNLSGHVGSP-NAACEIKLVDVPEMNY--TSEDQPCPR-----GEI 496
T S + + E D+L + NA ++ + + ++ T +P P GEI
Sbjct: 346 TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEI 405
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556
+RG ++ KGY K+ +E +GWFH+GD+G+ P G ++I DR K+I ++ GE I
Sbjct: 406 VMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDII-ISGGENI 463
Query: 557 AAEKIENV 564
++ ++ENV
Sbjct: 464 SSLEVENV 471
|
Length = 567 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 5e-18
Identities = 112/497 (22%), Positives = 174/497 (35%), Gaps = 117/497 (23%)
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+G+ N PE+ ++ A + + V L T A+ + HA Q V L
Sbjct: 57 VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD 116
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVAT 260
V + V +++ L+ R PF PDD+
Sbjct: 117 GLDPGVRVIN--------------------VDSPAWADELAAHRDAEPPFRVADPDDLFM 156
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVM 317
+ +TSGT+G PK +H + + AG L +F P DV Y+S +PL H +N VM
Sbjct: 157 LIFTSGTSGDPKAVRCTHRKV--ASAGVMLAQRFGLGPDDVCYVS-MPLFH----SNAVM 209
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
+G AV G ++ L +A + F R Y YA
Sbjct: 210 ---AGWAVALAAGASIALRRKFSA---SGFLPDVRRYGATYAN----------------- 246
Query: 378 AAYNAKKQAMLSGKNPSPMWD------RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
Y K + + P D R+V+ G+ +P D+ F
Sbjct: 247 --YVGKPLSYVLATPERP--DDADNPLRIVY--------------GNEGAP--GDIARFA 286
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ FG V +G+G TE I++ D G +G + +VD P+ C
Sbjct: 287 RR-FGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVD-PDTG-----TEC 335
Query: 492 PRGEIC----------------VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
P E GP F+GYY D E + G + +GD+
Sbjct: 336 PPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDAD 394
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY-------GDSFNSALVA- 587
G R + ++ GE + IE + + + VY GD +ALV
Sbjct: 395 GYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLA 453
Query: 588 -IVSVDQDALKAWAASE 603
D DA + A++
Sbjct: 454 PGAKFDPDAFAEFLAAQ 470
|
Length = 529 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-17
Identities = 117/505 (23%), Positives = 185/505 (36%), Gaps = 111/505 (21%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA----------- 157
G +W +Y E + +GL GI +G + N E+ IV A
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 158 --------CSAY-SFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT 208
+AY S I LY + A ++F L S L PT
Sbjct: 104 LFSHRKSELTAYASQIEPALY--IIDRA----------HSLFDYDDFARQLQSKL---PT 148
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
+R I+V G + L + + + F P K D+VA + G+T
Sbjct: 149 LRNIIVAGQTGEAELFLWLES-----PAEPV---------KFPPTKSDEVAFFQLSGGST 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY 328
GTPK +H + SV + Y+ LP AH N ++ + V FY
Sbjct: 195 GTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAH-----NYPLSSPGALGV-FY 248
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388
G + L D + F L R +T+ V + L AA +K +A L
Sbjct: 249 AGGCVVLAPDPSPT--DCF----PLIERHKVTVTALVPPAVAL---WMQAA--SKSRADL 297
Query: 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET 448
S ++ + G + S + FG ++ + +GM E
Sbjct: 298 SS----------------------LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG 335
Query: 449 SCLISQLDEGDNLSGHV-GSPNAAC-EIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLI 503
++LD+ + G P + E+++VD P GE + RGP
Sbjct: 336 LVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-------DHGNPVAPGETGMLLTRGPYT 388
Query: 504 FKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
F+GYYK D +G+++TGD+ P G + ++ R K+ GE IAAE+IEN
Sbjct: 389 FRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRG-GEKIAAEEIEN 447
Query: 564 VYAKCKFVGQCFVYGDSFNSALVAI 588
+ ++ALV++
Sbjct: 448 ---------LLLAHPAVHDAALVSM 463
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
V YGMTETS + Q D+L VG E+K+VD + PRGE
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-------PDGATVPRGE 398
Query: 496 I---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552
I C RG + KGY+ + T E IDEDGW HTGD+ G ++I+ R K++ +
Sbjct: 399 IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI-IRG 457
Query: 553 GEYIAAEKIE 562
GE I +IE
Sbjct: 458 GENIYPREIE 467
|
Length = 558 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 6e-17
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G+ W TY E A V + L+ G+ KG + N + ++ AC+ + VP+
Sbjct: 33 GDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPV 91
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
L + + YI++H+ +A P + + L+ +P LI+ L
Sbjct: 92 NFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL--------SLVLGGR 143
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
++ S +P DD+A I YTSGT PKGA+L+H LIA
Sbjct: 144 EAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203
Query: 289 TLGTKFYPSDVYISYLPLAH 308
+ D+ + LPL H
Sbjct: 204 IVAGDMSADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-17
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 40/254 (15%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
D + + D + VD Y TY A + + + L+ GI G +
Sbjct: 27 DYWQQTARAMPDKIAV-----VDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVA 78
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS---- 198
E+ I+ AC +SVPL + + +++N + F P
Sbjct: 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPV 137
Query: 199 --LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD 256
+L +++P ++ IV G+D P+ L+ S +++ L D
Sbjct: 138 DLILPLQNQLPQLQQIV---GVDKLAPATSS------LSLSQIIADYEP-LTTAITTHGD 187
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
++A + +TSGT G PKG +L+H N++AS DV++ PL H
Sbjct: 188 ELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH-------- 239
Query: 317 MTVYSGVAVGFYQG 330
A GF G
Sbjct: 240 -------ATGFLHG 246
|
Length = 547 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-16
Identities = 88/389 (22%), Positives = 135/389 (34%), Gaps = 113/389 (29%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG---NLIASVAGATLGTKFYPSDVY---------IS 302
PDD+A + YTSG+TG PKG +SH N + S+A G SD IS
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMA-RRPGLG--ASDRLLAVTTISFDIS 148
Query: 303 ----YLPL---AHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYN 355
LPL A + +A D +L +A R T+ + P +
Sbjct: 149 VLELLLPLLSGATVV------------IASAETVRDPERLARLIADERITIMQATPATWR 196
Query: 356 RIYAGITSAVRTSGGLRERLFNAAYNAKKQ-AMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
L A + ++ L
Sbjct: 197 ------------------MLLAAGWRGRESLTALC------------------------- 213
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAAC 472
G L D+ + L G + YG TET+ +++ D +G P A
Sbjct: 214 ----GGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANT 267
Query: 473 EIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVI-----DEDG-- 522
++ ++D + QP P GE+ + G + +GY T E D+ G
Sbjct: 268 QVYVLD-------EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGR 320
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF- 581
+ TGD+ W P GRL+ + R + K+ +G I +IE V V
Sbjct: 321 LYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAVVVVREEG 379
Query: 582 --NSALVAIV------SVDQDALKAWAAS 602
+ LVA V + D +AL+A +
Sbjct: 380 PGDQRLVAYVVPKAGAAPDAEALRAALRA 408
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 79/324 (24%), Positives = 120/324 (37%), Gaps = 74/324 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD---VYISYLPLAHIYE 311
PD VA +TSG+TG PK + + + A++A P V + ++P H
Sbjct: 219 PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMG 278
Query: 312 -RANQVMTVYSGVAVGFYQGDNMKLMDDM-----AALR---PTVFCSVPRLYNRIYAGIT 362
AN ++ G G D+ K + M LR PTV+ +VP YA +
Sbjct: 279 GNANFNGLLWGG---GTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPA----GYAMLA 331
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
A+ LR F +R M G +
Sbjct: 332 EAMEKDDALRRSFFK----------------------------------NLRLMAYGGAT 357
Query: 423 LSPDV---LDFLKICFGGR---VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476
LS D+ + L + G GYG TET+ + G +G P E+KL
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKL 417
Query: 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI--- 533
V + + E+ V+GP + GY+KD T DE+G++ GD ++
Sbjct: 418 APVGD-----------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466
Query: 534 -PGGRLKIIDRKKNIFKLAQGEYI 556
P L R FKL+ G ++
Sbjct: 467 DPEKGLIFDGRVAEDFKLSTGTWV 490
|
Length = 624 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-16
Identities = 68/303 (22%), Positives = 115/303 (37%), Gaps = 56/303 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD A + +TSGTTG PK + +H + + P D++ + +
Sbjct: 80 ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139
Query: 315 QVMTVY-SGVAVGFYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
+ + G AV Y G D + ++ + T FC+ P Y
Sbjct: 140 SLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY---------------- 183
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
R+ +Q + S +R + S PL+P+V+D+
Sbjct: 184 ---RML------LQQDLSSYDFS------------------HLRHVVSAGEPLNPEVIDW 216
Query: 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G + +GYG TET L++ + G +G P + ++D E N +
Sbjct: 217 WRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEE 275
Query: 491 CPRGEICV----RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
G+I V R P +F+GY KD +T+ I W+ TGD + G + R +
Sbjct: 276 ---GDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADD 331
Query: 547 IFK 549
+ K
Sbjct: 332 VIK 334
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+D G +TY E + +GL G KG + L N E+ +V A +
Sbjct: 25 IDAATGRA--LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGA 82
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
+ P + V + + + L S L+ P V L D
Sbjct: 83 VVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLAS-LALEPVVLL--------DSAD 133
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
+LL P K DDVA + Y+SGTTG KG +L+H NLIA
Sbjct: 134 DGS-------AAIDDLLFADEPEP-PVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA 185
Query: 284 SVAG--ATLGTKFYPSDVYISYLPLAHIY 310
+VA A G F DV + LP+ HIY
Sbjct: 186 NVAQLVAGEGPNFDREDVTLCVLPMFHIY 214
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 35/171 (20%)
Query: 442 GYGMTE---TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
GYG+TE T C D L+G VGSP E+KLVD GEI +
Sbjct: 270 GYGLTEMASTVCA----KRADGLAG-VGSPLPGREVKLVD---------------GEIWL 309
Query: 499 RGPLIFKGYYKD-EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
RG + GY++ ++ +++++GWF T D G W G L I+ R N+F + GE I
Sbjct: 310 RGASLALGYWRQGQLVP--LVNDEGWFATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQ 365
Query: 558 AEKIENVYAKCKFVGQCFVY--GDS-FNSALVAIV----SVDQDALKAWAA 601
E+IE V + V Q FV D+ F VA+V L W
Sbjct: 366 PEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQ 416
|
Length = 458 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-16
Identities = 58/166 (34%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-----QLDEGD-----NLS 462
+R + +GA L P+V D + FG R+ EGYG TETS + S L +
Sbjct: 900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVI- 518
G VG P +++VD PE + + P GE I + GP + KGY D +T EVI
Sbjct: 960 GSVGMPLPGVAVRIVD-PE-TF----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
Query: 519 --DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
D GW+ TGD G G L I DR K+ GE + +E
Sbjct: 1014 DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058
|
Length = 1146 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 87/333 (26%), Positives = 130/333 (39%), Gaps = 57/333 (17%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS--DVYISYLPLAHIYER 312
DD A + YTSGTTG PKGA+ H L+ + G L + P DV+ + A I
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGL 146
Query: 313 ANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ ++ +Y GV V Y+ M+ D A + R Y G+T+A L
Sbjct: 147 LDVLLPALYFGVPVVAYR---MQRFDPERAFA------LMRRY-----GVTNAFLPPTAL 192
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
+ G +D R+R + SG L ++L++
Sbjct: 193 K------------MMRRVGS-ERARYDL------------RLRAVASGGESLGEELLEWA 227
Query: 432 KICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G V E YG TE + ++ G G +G P E+ +VD +P
Sbjct: 228 RDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHEVAVVD-------DAGRP 280
Query: 491 CP---RGEICVR--GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
P GEI V+ P++F GY+ + T W TGD+G G L R
Sbjct: 281 VPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGRAD 339
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
++ K + G I +IE K V + V G
Sbjct: 340 DVIKSS-GYRIGPAEIEECLLKHPAVLEAAVVG 371
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 102/535 (19%), Positives = 203/535 (37%), Gaps = 68/535 (12%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146
R+V ++ LG GE +W+TYG E+GSGL+ G+ G IG+
Sbjct: 435 RSVTRHSTFRCLGQT----SESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490
Query: 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-E 205
+I++ AC+ Y F ++PL ++ +++ ++ VF ++ ++L+C S +
Sbjct: 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRK 548
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ TV + D+ ++ + ++ Y + +GR P Y
Sbjct: 549 LETV--VYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPL-KEHVTTDTVFTYVV 605
Query: 266 GTTGTPKGAVLS-----HGNLIASVAGATLGTKFYPS----DVYISYLPLAHIYERANQV 316
T + G L+ H +++ ++ + T PS + + + P A ++ R +
Sbjct: 606 DNTTSASGDGLAVVRVTHADVLRDIS-TLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVL 664
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
G AV D L +PT+ + P L++ ++ A + LF
Sbjct: 665 GLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLF 722
Query: 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR--FMGSGASPLSPDVLDFLKIC 434
A+ + + + + S + + F ++ LGG V + S +L+ + +C
Sbjct: 723 ERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVC 782
Query: 435 FGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSE--DQPC 491
+ + L EG + P + E D+P
Sbjct: 783 Y----------VPCLREVFFLPSEG------------VFCVDGTPAPSLQVDLEPFDEPS 820
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI-GMWIPGGRLKIIDRKKNIFKL 550
I G L+ K+ T I W L+++ I
Sbjct: 821 DGAGI---GQLVL---------AKKGEPR----RTLPIAAQWKRDRTLRLLGPPLGILLP 864
Query: 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK-AWAASEG 604
EY+ A ++E ++++ ++V F+Y D + ++AIVS ++D ++ W S
Sbjct: 865 VAYEYVIAAELERIFSQSRYVNDIFLYADP-SRPIIAIVSPNRDTVEFEWRQSHC 918
|
Length = 1452 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNA 470
VR+ +G +P P+ L I G +G+GMTETS + L E D G +G P
Sbjct: 266 VRWFYNGGAP-CPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVL 324
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
C+ +L+D ++ + GE+ +RGP + K Y+ T+E I +DGW TGD+
Sbjct: 325 FCDYELID----ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLA 379
Query: 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
G + I+ RKK + ++ GE I ++E V K V + V G
Sbjct: 380 RVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVG 426
|
Length = 496 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166
+ E + MTY + ++V + LIY + KG I + N E++++ A + I+V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226
PL L + + + + + +F N LS + +V V+ ++ I +
Sbjct: 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALS-MQKVSYVQRVISITSL-------- 132
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
+ + N F ICYTSGTTG PKGAVL+ N+ +
Sbjct: 133 ----------KEIEDRKIDN---FVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 287 GATLGTKFYPSDVYISYLPLAHI 309
T D I LPL HI
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHI 202
|
Length = 496 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-15
Identities = 109/508 (21%), Positives = 188/508 (37%), Gaps = 121/508 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
GE K T+G+ + + GI KG + L R E+ A I++P
Sbjct: 43 GEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPA 102
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIG---------- 216
L + Y + A ++ + C+ + + E + L+V++G
Sbjct: 103 THMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDF 162
Query: 217 --GIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274
I++ P TG DD+ + +TSGTTG PK
Sbjct: 163 DKEIENASPDFERPTGN-------------------DATCNDDILLVYFTSGTTGMPK-- 201
Query: 275 VLSHGNLIASVAGATLGTKFY----PSDVYISYLPL-------AHIYERANQVMTVYSGV 323
++ H + G + K++ ++++ +Y Q + +G
Sbjct: 202 MVEHDHTYP--LGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLY---GQWI---AGA 253
Query: 324 AVGFYQGDNM---KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
AV Y D L++ + T FC+ P +Y R ++E L
Sbjct: 254 AVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL------------IKEDLSKYDL 300
Query: 381 NAKKQAMLSGK--NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
++ + +G+ NP VFN K+K G ++
Sbjct: 301 SSLRYCTTAGEPLNPE------VFNTFKEKTGIKLM------------------------ 330
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
EG+G TET+ I+ + G +G P+ +I ++D + + C GE
Sbjct: 331 --EGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID-------PDGKSCEVGEEGE 381
Query: 496 ICVR----GPL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550
I +R PL +F GYY+D +T EV DG++HTGD G L + R ++ K
Sbjct: 382 IVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGRADDLIKS 440
Query: 551 AQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ G I ++E+ + V +C V G
Sbjct: 441 S-GYRIGPFEVESALIQHPAVLECAVTG 467
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 5e-15
Identities = 109/470 (23%), Positives = 176/470 (37%), Gaps = 91/470 (19%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
+ + LI I+K + + N P + A + P+ L ++ I+ HA
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 186 VQAVFC------VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ +F + + + LLS + ++ I ID P + L Y L
Sbjct: 112 PKILFVDRSFEPLAREVLHLLSSEDSNLNLP-VIFIHEID-----FPKRPSSEELDYECL 165
Query: 240 LSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295
+ +G + F D ++ YTSGTT PKG V+SH S A +G +
Sbjct: 166 IQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMG 225
Query: 296 PSDVYISYLPLAH---------IYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
VY+ LP+ H R + + A Y+ M + M
Sbjct: 226 TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHM------- 278
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
C VP ++N + G + + SP
Sbjct: 279 -CCVPTVFNILLKG----------------------------NSLDLSPR---------- 299
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI---SQLDEGDNLSG 463
G V + G+ P P L G +V YG+TE + + DE + L
Sbjct: 300 ---SGPVHVLTGGSPP--PAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354
Query: 464 H----VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQT 514
+ + + + L DV N + PR GEI ++G I KGY K+ T
Sbjct: 355 NQQMELKARQGVSILGLADVDVKN-KETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
E + GW +TGD+G+ P G ++I DR K+I ++ GE I++ ++ENV
Sbjct: 414 SEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV 461
|
Length = 579 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 25/144 (17%)
Query: 435 FGGRVTEGYGMTETSC-LISQLDEGDNLSGH-----VGSPNAACEIKLVDVPEMNYTSED 488
FG R+ YGMTET +I GD +G P E ++ D +
Sbjct: 311 FGVRLLTSYGMTETIVGII-----GDRPGDKRRWPSIGRPGFCYEAEIRDD-------HN 358
Query: 489 QPCPR---GEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
+P P GEIC++G IFK YY D T +V++ DGW HTGD G G +D
Sbjct: 359 RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVD 418
Query: 543 RKKNIFKLAQGEYIAAEKIENVYA 566
R+ N+ K GE ++ ++EN+ A
Sbjct: 419 RRCNMIKRG-GENVSCVELENIIA 441
|
Length = 517 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 66/283 (23%), Positives = 99/283 (34%), Gaps = 67/283 (23%)
Query: 69 VSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
V+RFPD + H R T+ + A +
Sbjct: 28 VARFPDREALVVRH---------------QALR------------YTWRQLADAVDRLAR 60
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
GL+ G+ G +G++ N EWL+ A + I V + ++Y + + V+
Sbjct: 61 GLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRW 120
Query: 189 VFCVP--------QTLNSLLSCLSE----------VPTVRLIVVIGGIDDQIPSLPITTG 230
V C L LL L+E +P +R +V + G
Sbjct: 121 VICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--------PPG 172
Query: 231 VQILTYSNLLSQG----RSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI--A 283
L + L ++G R L DD I YTSGTTG PKGA LSH N++
Sbjct: 173 --FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNG 230
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
+LG D +PL H + V+ + VG
Sbjct: 231 YFVAESLG--LTEHDRLCVPVPLYHCF---GMVLANLGCMTVG 268
|
Length = 558 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-14
Identities = 113/539 (20%), Positives = 173/539 (32%), Gaps = 159/539 (29%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
+TY E + L G+ G + L PE ++ + A +AY VPL
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPLD 68
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
+ + +++ A LL+ S P R + I ++
Sbjct: 69 PAYPAERLAFML--EDSGARV--------LLTDESLAPLARADQLPLVILEEEL------ 112
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DD+A + YTSG+TG PKG + H V
Sbjct: 113 ------------DAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPH----RGVVRLV 156
Query: 290 LGTKFY---PSDVYISYLPLA------------------HIYERANQVMTVYSGVAVGFY 328
T + P D ++ PL+ + ++
Sbjct: 157 RNTNYIALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKE--------------- 201
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN--AAYNAKKQA 386
+ D L RL G+T T+ LFN +
Sbjct: 202 ------TLLDPDRLA--------RLIAE--QGVTVLWLTAA-----LFNQLVDEDP---E 237
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD-VLDFLKICFGGRVTEGYGM 445
L+G +R + G LSP V L C G R+ GYG
Sbjct: 238 ALAG----------------------LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGP 275
Query: 446 TE----TSC-LISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
TE ++C +I++LDE + G P + ++D E QP P GE
Sbjct: 276 TENTTFSTCHVITRLDEAA---DSIPIGRPIPNTTVYILD-------EEGQPVPIGVPGE 325
Query: 496 ICVRGPLIFKGYYKDEIQTKEVIDED----G--WFHTGDIGMWIPGGRLKIIDRKKNIFK 549
+ V G + GY T E D G + TGD+ W P G ++ + R K
Sbjct: 326 LYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVK 385
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNS---ALVAIVS----VDQDALKAWAA 601
+ +G I +IE + V + V + LVA V +D L+A A
Sbjct: 386 I-RGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAAELRAHLA 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 95/513 (18%), Positives = 166/513 (32%), Gaps = 95/513 (18%)
Query: 128 SGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQ 187
+ L G+ +G + ++ N EW+++ AC+ + + V +I+ +
Sbjct: 50 AWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRAR 109
Query: 188 AVFCVPQ----TLNSLLSCL--SEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLL 240
+ P ++L+ + +P +R I V+ D P+ P
Sbjct: 110 WLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAP 169
Query: 241 SQGRSNLQPFSPPKPDDVATICYT-SGTTGTPK------GAVLSHGNLIASVAGATLGTK 293
D + +T SGTT PK +L H IA G
Sbjct: 170 PAAAG-----ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYG------ 218
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRL 353
+ P V ++ LP ++ +S + G + VF +
Sbjct: 219 YDPGAVLLAALPFCGVFG--------FSTLLGALAGGAPLVCEP--------VFDAARTA 262
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+T LR R+ + A P
Sbjct: 263 RALRRHRVTHTFGNDEMLR-RILDTAGERA---------DFP----------------SA 296
Query: 414 RFMGSGA-SPLSPDVLDFLKICFGGRVTEG-YGMTETSCLISQLDEGDNLS------GHV 465
R G + +P ++ G G YG +E L++ D +S G
Sbjct: 297 RLFGFASFAPALGELAALA--RARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRP 354
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
SP A ++ D + + + GEI +R P + +GY + T + +DG+F
Sbjct: 355 ASPEA--RVRARDPQDGALLPDGES---GEIEIRAPSLMRGYLDNPDATARALTDDGYFR 409
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NS 583
TGD+G G+ R + +L G + +IE+ V V G + +
Sbjct: 410 TGDLGYTRGDGQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468
Query: 584 ALVAIV------SVDQDALKAWAASEGIQSLAP 610
VA V S D+ L A ++LA
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACR----EALAG 497
|
Length = 540 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 104/498 (20%), Positives = 182/498 (36%), Gaps = 88/498 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++YGE +G+ L G+ + + L ++ ++ I + V L L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D Y++ + + VF + L + + L + P + VV+G + L
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQL-------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATL 290
+ LL+ +P + + DD A Y+SG+TG PKG V +H N + A TL
Sbjct: 143 ---AELLATESEQFKP-AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQV---MTVYSGVAVGFYQGDNMKLMDDMAALRPTVF 347
G + DV S L Y N + M+V + + + + D + +PT+F
Sbjct: 199 GIR--EDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIF 256
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
VP LY AML+ N +
Sbjct: 257 YGVPTLY------------------------------AAMLADPN------------LPA 274
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+ R+R S L +V + FG + +G G TE + GD G G
Sbjct: 275 EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK 334
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P ++LV + +P GE+ + GP Y+ + +T++ + W +G
Sbjct: 335 PVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTF-QGEWTRSG 389
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVA 587
D + G R ++ K++ G Y++ +IE SAL+
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIE--------------------SALIQ 428
Query: 588 IVSVDQDALKAWAASEGI 605
+V + A+ +G+
Sbjct: 429 HPAVLEAAVVGVEDEDGL 446
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 3e-14
Identities = 72/344 (20%), Positives = 115/344 (33%), Gaps = 61/344 (17%)
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH--GNLIASVAGATLGTK 293
+ + YT+GTTG PKG V SH L + A GT
Sbjct: 133 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 192
Query: 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVP 351
DV + +P+ H+ T+ V + + + T VP
Sbjct: 193 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 252
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
++ + + +L
Sbjct: 253 TVWLALA----------------------DYL-------------------ESTGHRLKT 271
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCL------ISQLDEGDN 460
R + G++ P L G V +GYG+TE +E
Sbjct: 272 LRRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 329
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
L G P +++ D E +D E+ ++GP I GYY +E T+ +
Sbjct: 330 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALG-EVQLKGPWITGGYYGNEEATRSALTP 387
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
DG+F TGDI +W G ++I DR K++ K GE+I++ +EN
Sbjct: 388 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENA 430
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+F AV D L T R G + +Y E + GL G+ +G
Sbjct: 23 TINDHFDAAVANCPDKPAL-TAYRDGH--GAVRRFSYRELDCRVDRIAVGLARLGVGRGD 79
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS- 198
+ NR E+ + AC+ + PL + +++NHA + VF VP
Sbjct: 80 VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSK-VFVVPSVFRGF 138
Query: 199 -----LLSCLSEVPTVRLIVVIGGI-DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S++P +R +VVI G DD + +T + + G
Sbjct: 139 DHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAG-------PR 191
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
P PDDV + YTSGTTG PKG + + L +++ + DV + P+AH
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGHV---GSPNAACEIKLVDVPEMNYTSEDQPCPRGEIC 497
YG TE S + ++ D LS + G A EIK+VD P GE
Sbjct: 331 SVYGSTE-SSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD----EARKTLPPGCEGEEA 385
Query: 498 VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
RGP +F GY + T +DE+GW+++GD+ G +KI RKK+I + GE I+
Sbjct: 386 SRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII-VRGGENIS 444
Query: 558 AEKIENVYAKCKFVGQCFVYG 578
+ ++E++ + + V
Sbjct: 445 SREVEDILLQHPKIHDACVVA 465
|
Length = 547 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 8e-14
Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
R + D + L V D +W TY E + GL+ GI KG +G
Sbjct: 20 QLLDRTAARYPDREAL---VYRDQ---GLRW-TYREFNEEVDALAKGLLALGIEKGDRVG 72
Query: 143 LYFVNRPEWLIVDHACSAYSFISV---PLYDTLGPDAVKYIVNHASVQAVFCVP------ 193
++ N PEW++ A + I V P Y ++Y +N + +A+
Sbjct: 73 IWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKALIAADGFKDSD 129
Query: 194 --QTLNSLLSCL----------SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
L L L + +P +R ++ +G D++ P + L + LL+
Sbjct: 130 YVAMLYELAPELATCEPGQLQSARLPELRRVIFLG--DEKHPGM--------LNFDELLA 179
Query: 242 QGRSN----LQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI 282
GR+ L PDD I YTSGTTG PKGA L+H N++
Sbjct: 180 LGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 88/332 (26%), Positives = 124/332 (37%), Gaps = 63/332 (18%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV-AGATLGTKFYPSDVYISYLPLAHIYER 312
DDVA I +TSGTTG PKG + H +++A A + P DV+I PLA +
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204
Query: 313 ANQVM-TVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
V+ + G AV Q L+ + R T+ + P Y
Sbjct: 205 GGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYR--------------- 249
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
AML K+K +R S L V
Sbjct: 250 ---------------AML--------------IKVKAFDISSLRKCVSAGETLPAKVWQD 280
Query: 431 LKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
G ++ +G G TE IS +E + G G P E ++VD +
Sbjct: 281 WYERTGLKIIDGIGATEMLHIFISANEE-NAKPGATGKPVPGYEARIVD-------DQGN 332
Query: 490 PCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
PRGE + VRGP + Y DE Q + V DGW TGDI G + R +
Sbjct: 333 EVPRGEAGRLAVRGPTGCR-YLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDD 389
Query: 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ ++ G IAA ++E+ V +C V G
Sbjct: 390 MI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 65/303 (21%)
Query: 43 YSVVLPEKLDTGKW-NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR 101
S+ LPE T + N+ S+R R+PD I + G
Sbjct: 3 KSLTLPE---TSLFHNLEVSAR-------RYPDKTAI-----------------VFYGRA 35
Query: 102 VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH--GISKGSCIGLYFVNRPEWLIVDHACS 159
+ +Y E E +G + G+ KG + LY N P+++I +A
Sbjct: 36 I------------SYREL-LEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82
Query: 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVV-IGGI 218
+ + VP+ + + + V + + + + + + +IV
Sbjct: 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDY 142
Query: 219 DDQIPSLPITTGVQ------------ILTYSNLLSQGRSNLQPFSPP---KPDDVATICY 263
P + + ++ ++ + L+ G L P PP PDD+A + Y
Sbjct: 143 LPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAG---LAP--PPHTAGPDDLAVLPY 197
Query: 264 TSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT-VYSG 322
TSGTTG PKG + +H ++A+ G+ L + P V ++ LPL H+ + + +Y+G
Sbjct: 198 TSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAG 257
Query: 323 VAV 325
V
Sbjct: 258 ATV 260
|
Length = 546 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 114 MTYGE-AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E AR + + L G + G + L +++ C I+VP
Sbjct: 24 LTYAELDRRAR-AIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPR 81
Query: 173 GP----DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ I+ A +AV L +L + L+ + L+++ D + +L
Sbjct: 82 RLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIA---ADDLAALAAA 138
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
PP PDD+A + YTSG+TG PKG +++HGNL+A++
Sbjct: 139 DW------------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180
Query: 289 TLGTKFYPSDVYISYLPLAH 308
P DV +S+LPL H
Sbjct: 181 ARAFGLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-13
Identities = 46/123 (37%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 436 GGRVTEG-YGMTETSCLIS-----QLDEGDNLSG--HVGSPNAACEIKLVDVPEMNYTSE 487
G + E +GMTET + Q D+ D LS VG P E K+ D T E
Sbjct: 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE----TGE 407
Query: 488 DQPC-PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
P GEI VR P + KGY+ T E + DGW HTGDIG G L + R+K
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKE 466
Query: 547 IFK 549
+ K
Sbjct: 467 MLK 469
|
Length = 567 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 7e-13
Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+ V + D K T VR+ G + TY E V GL G+ +G
Sbjct: 25 TINDDLDACVASCPD-KTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARLGVGRGD 81
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-- 197
+ N E+ ++ ACS + PL + +++ HA V VP+T
Sbjct: 82 VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAE-SKVLVVPKTFRGF 140
Query: 198 ---SLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP- 252
++ L E+P +R +VV+GG ++ LL +P +P
Sbjct: 141 DHAAMARRLRPELPALRHVVVVGGDGAD-------------SFEALLITPAWEQEPDAPA 187
Query: 253 ------PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306
P PDDV + YTSGTTG PKG + + L+A++ DV + P+
Sbjct: 188 ILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247
Query: 307 AH 308
AH
Sbjct: 248 AH 249
|
Length = 547 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-13
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L GR L F PDD A I +TSG+ GTPKG VLSH NL+A+ A F P D
Sbjct: 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDK 836
Query: 300 YISYLPLAHIYE-RANQVMTVYSGVAVGFY 328
+ LP+ H + V+ + SGV V Y
Sbjct: 837 VFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866
|
Length = 1140 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI KG + L+ N PE++ + I VP+ L + +I+ ++ +
Sbjct: 58 GIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSA 117
Query: 194 QTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
Q E T +R I + +LP GV +++ L +Q + L P
Sbjct: 118 QFYPMYRQIQQEDATPLRHICLTR------VALPADDGV--SSFTQLKAQQPATLCYAPP 169
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
DD A I +TSGTT PKG V++H NL + + DVY++ +P HI +
Sbjct: 170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQ 229
Query: 313 ANQVMTVYS 321
M +S
Sbjct: 230 CTAAMAAFS 238
|
Length = 517 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 435 FGGRVTEGYGMTETSCL--ISQL-DEGDNLSGHV--------GSPNAACEIKLVDVPEMN 483
G V +GMTE S L ++ L L G G P E+K+ D
Sbjct: 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD----- 371
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P G + VRGP + YY+ + E++D+DG+F TGD+ G +
Sbjct: 372 --DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYM 426
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENV 564
+I DR K++ K + GE+I++ +EN+
Sbjct: 427 RITDRSKDVIK-SGGEWISSIDLENL 451
|
Length = 542 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 68/317 (21%), Positives = 115/317 (36%), Gaps = 52/317 (16%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD+ YTSGTTG PKG + L A A DV+ +
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWN------------ 134
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G A G Y + +A TVF + G T+ R
Sbjct: 135 ---IADPGWAYGLY----YAITGPLAMGITTVF---------LEGGFTAENTYDVLERLG 178
Query: 375 LFNAAYNAKK-QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
+ N A + + +++ + + ++R S PL+P+V+ + +
Sbjct: 179 VTNFAGSPTAYRMLMAAGADAAARIK-----------LKLRVASSAGEPLNPEVVRWFQA 227
Query: 434 CFGGRVTEGYGMTETSCLISQL--DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
G + + YG TET + + +G +G P I ++D + ++ +P
Sbjct: 228 NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEP- 285
Query: 492 PRGEICVR----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
G++ + L F GY+ D +T E+I W+ TGD+ G I R ++
Sbjct: 286 --GQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGRADDV 342
Query: 548 FKLAQGEYIAAEKIENV 564
A G I +E+
Sbjct: 343 IISA-GYRIGPFDVESA 358
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 419 GASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIK 475
GAS + +VL L+ G R YG TE + L + L ++L G G P E +
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETR 353
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
+VD + N + + GEI R P + GY+ D +T E GWFH+GD+G+
Sbjct: 354 VVD-DDGNDVAPGEV---GEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE 408
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G + ++DRKK++ K GE +A+ ++E
Sbjct: 409 GYITVVDRKKDMIKTG-GENVASREVEEA 436
|
Length = 523 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNLSGHVGSPNAA 471
F+ +GA P+ +++ + G ++ +GMTE L D + S G P
Sbjct: 316 TFLCAGA-PIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPG 374
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P P G+I VRG F GY K D DGWF TGD
Sbjct: 375 VEVRVVD-------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGD 425
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+ G ++I R K++ + GE I +IE +
Sbjct: 426 LARIDADGYIRISGRSKDVI-IRGGENIPVVEIEAL 460
|
Length = 547 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 86/378 (22%), Positives = 127/378 (33%), Gaps = 70/378 (18%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHIY 310
PK DD A I +TSG+TG PKG V +H A + L + + D ++ P ++
Sbjct: 82 PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQID--ALRSLYGIREGDRDLAAFPPFALF 139
Query: 311 ERANQVMTVYSGVAVGF-YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
A V TV + D KL + + + P L +
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEENGIQLP 199
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
LR +LS P P D L V + A +P
Sbjct: 200 SLRR-------------VLSAGAPVP----------PDLLRRFVANLMPEAEIHTP---- 232
Query: 430 FLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH-----------VGSPNAACE---I 474
YG TE L ++ ++ + L+ VG P + I
Sbjct: 233 -------------YGATE--ALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRII 277
Query: 475 KLVDVP--EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK-EVIDED--GWFHTGDI 529
+ D P + E P GEI V GP + + YY TK I + W GD+
Sbjct: 278 PIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDL 337
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSFNSALVA 587
G + GRL RK + + A G + +E V+ + V + + G A V
Sbjct: 338 GYFDDQGRLWFCGRKAHRVETAGG-TLFTVPVEQVFNRHPGVRRSALVGVGKPGTQAPVL 396
Query: 588 IVSVDQDALKAWAASEGI 605
+V L EG
Sbjct: 397 VVEPMPPVLDRRKRLEGR 414
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 113/461 (24%), Positives = 174/461 (37%), Gaps = 122/461 (26%)
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC 202
L F + P+++ C I+VP Y P++ + LLS
Sbjct: 69 LLFPSGPDYVAAFFGCLYAGVIAVPAYP---PESAR--------------RHHQERLLSI 111
Query: 203 LSEVPTVRLIVVIGGIDD---QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP-KPDDV 258
+++ RL++ + + D Q+ L ++L L Q P +PDD+
Sbjct: 112 IADAEP-RLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAEAWQ--EPALQPDDI 168
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIAS--VAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
A + YTSG+T PKG +SHGNL+A+ + G P DV +S+LPL H
Sbjct: 169 AFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHD------- 221
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP-RLYNRI--YAGITSAVRTSGG--- 370
M + G+ + G LM P F P R I Y G SGG
Sbjct: 222 MGLIGGLLQPIFSGVPCVLMS------PAYFLERPLRWLEAISEYGGT-----ISGGPDF 270
Query: 371 ----LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
ER+ +A L + S RV + SG+ P+ D
Sbjct: 271 AYRLCSERVSESA--------LERLDLS---------------RWRVAY--SGSEPIRQD 305
Query: 427 VLDFLKICFGG------RVTEGYGMTETSCLIS-----------QLDEGDNLSGHV---- 465
L+ F YG+ E + +S +LD + L+ +
Sbjct: 306 SLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELD-AEALARNRAEPG 364
Query: 466 -GSPNAAC-------EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD-EIQTKE 516
GS +C + +VD + +++ GEI GP I GY+++ E K
Sbjct: 365 TGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRV---GEIWASGPSIAHGYWRNPEASAKT 421
Query: 517 VIDEDG--WFHTGDIGMWIPG-----GRLK--IIDRKKNIF 548
++ DG W TGD+G G GRLK +I R N++
Sbjct: 422 FVEHDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLY 462
|
Length = 4334 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 94/377 (24%), Positives = 143/377 (37%), Gaps = 87/377 (23%)
Query: 229 TGVQIL-----TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
GV++L Y+ L+ L P D + +TSGTTG PK SHG L
Sbjct: 119 PGVRVLDVDTPAYAELV-AAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLA- 176
Query: 284 SVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
AG L +F DV Y+S +PL H +N VM +G A G + L +
Sbjct: 177 -FAGRALTERFGLTRDDVCYVS-MPLFH----SNAVM---AGWAPAVASGAAVALPAKFS 227
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA--MLSGKNPSPMWD 398
A F R Y Y FN Y K A + + + P +
Sbjct: 228 ASG---FLDDVRRYGATY-----------------FN--YVGKPLAYILATPERPDDADN 265
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458
L RV F G+ ASP D+ +F + FG +V +GYG +E + ++ + E
Sbjct: 266 PL-----------RVAF-GNEASP--RDIAEFSRR-FGCQVEDGYGSSEGAVIVVR--EP 308
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR----------------GEICVR-GP 501
G +G A + + + PE C GE+ G
Sbjct: 309 GTPPGSIGRG--APGVAIYN-PETL-----TECAVARFDAHGALLNADEAIGELVNTAGA 360
Query: 502 LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561
F+GYY + T E + G + +GD+ G + R + ++ GE ++A I
Sbjct: 361 GFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPI 418
Query: 562 ENVYAKCKFVGQCFVYG 578
E + + + + VY
Sbjct: 419 ERILLRHPAINRVAVYA 435
|
Length = 540 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 87/324 (26%), Positives = 125/324 (38%), Gaps = 68/324 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY---PSDVYISYLPLAHIYE 311
P+DVA I +TSGT PKG L+H NL+A+ A L KF+ DV +S+LP H Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLAN-QRACL--KFFSPKEDDVMMSFLPPFHAY- 237
Query: 312 RANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
GF N + + + P VF P +I I A T G
Sbjct: 238 --------------GF----NSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGS 279
Query: 372 RERLFNAAYN-AKKQAMLSGKNPSPMWDRLVF---NKIKDKLGGRVRFMGSGASPLSPDV 427
F+ AKKQ R V + KD L A P +
Sbjct: 280 TPVFFDYILKTAKKQ------ESCLPSLRFVVIGGDAFKDSL-------YQEALKTFPHI 326
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTS 486
++ +GYG TE S +I+ VG P ++ +V S
Sbjct: 327 ----------QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIV--------S 368
Query: 487 EDQ--PCPRGE---ICVRGPLIFKGYY-KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
E+ P GE + RG +F GY +D Q + + W+ TGD+G G L +
Sbjct: 369 EETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428
Query: 541 IDRKKNIFKLAQGEYIAAEKIENV 564
R K+ E ++ E +E++
Sbjct: 429 KGRLSRFVKIG-AEMVSLEALESI 451
|
Length = 539 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 114 MTYGEAGTARTE-VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E R + LI G+ G +G+Y NR E++ + V +
Sbjct: 29 LTYAEL-EERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRY 87
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D ++Y+++ + A+ + + L +P +R +VV+ LP V
Sbjct: 88 VEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVED-GSGNDLLP--GAV- 143
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLG 291
Y + L+ G S + F PDD+ + YT GTTG PKG + ++ + G
Sbjct: 144 --DYEDALAAG-SPERDFGERSPDDLYLL-YTGGTTGMPKGVMWRQEDIFRVLLGGRDFA 199
Query: 292 TKFYPSDVY 300
T D
Sbjct: 200 TGEPIEDEE 208
|
Length = 533 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-11
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452
P +W + + + R+R S PL+P+V++ +K +G + +GYG TET+ +I
Sbjct: 182 PPTVWRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMI 240
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR---GPL-IFKG 506
G +G P + L+D E + P GEI + P+ + G
Sbjct: 241 GNSPGQKVKPGSMGRPLPGYRVVLLD-------DEGKEIPVTEGEIALDLGDRPIGLMLG 293
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
Y D +T G++ TGD G L + R ++FK
Sbjct: 294 YMGDPEKTAAAFR-GGYYRTGDKAYRDEDGYLWFVGRADDVFK 335
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 30/186 (16%)
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV--------GSPN 469
G S + P ++ + +G V +GMTETS + + +SG G
Sbjct: 305 VGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFP 364
Query: 470 AACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------KEVI 518
A+ E ++V+ + M T ++ GEI VRG + YY + ++V
Sbjct: 365 ASLEYRIVNDGQVMESTDRNE----GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVE 420
Query: 519 D------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG 572
D DGW TGD+G G L I DR +++ + + GE+I + ++EN V
Sbjct: 421 DANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVV 479
Query: 573 QCFVYG 578
+C V G
Sbjct: 480 ECAVIG 485
|
Length = 576 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 443 YGMTETSCLISQLDEGD----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI-- 496
+GM E ++LD+ D G SP+ E+ + D ++ P P+GE+
Sbjct: 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDD--EVWVAD-------ADGNPLPQGEVGR 382
Query: 497 -CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ--- 552
RGP F+GYYK D +G++ +GD+ P G + ++ R+K+ Q
Sbjct: 383 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKD-----QINR 437
Query: 553 -GEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAI 588
GE IAAE+IEN+ + + ++ALV++
Sbjct: 438 GGEKIAAEEIENLLLR---------HPAVIHAALVSM 465
|
Length = 536 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
+R++ +GA + + FG R+ EGYG+TET+ +I+ N +G VG
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +L VP ++ G + VRGP + GY + E DGW+ TGDI
Sbjct: 969 EYRLEPVPGID--------EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTI 1020
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
G + I R K K+A GE I+ +E
Sbjct: 1021 DEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050
|
Length = 1140 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + +I+NHA + V + L ++P+V VV+ +P TT
Sbjct: 98 LFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAA----HMPQTTLK 153
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-----LIASVA 286
+ Y +++ + + + + A +CYTSGTTG PKG + SH + L+A+
Sbjct: 154 NAVAYEEWIAEADGDFAWKTFDE-NTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212
Query: 287 GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
A LGT +D + +PL H AN +S ++G
Sbjct: 213 DA-LGTS--AADTMLPVVPLFH----ANSWGIAFSAPSMG 245
|
Length = 542 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 76/349 (21%), Positives = 121/349 (34%), Gaps = 81/349 (23%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATLGTKFYPSDVYISYLPL 306
P +P+ A + YTSGTTG PKGAV+ + V G + +V + +PL
Sbjct: 145 EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPL 204
Query: 307 AHIYERANQVMTVYSGVAVG-------------FYQGDNMKLMDDMAALRPTVFCSVPRL 353
H+ + V V F D +KL++ R T + P
Sbjct: 205 YHVIG--------FFAVLVAALALDGTYVVVEEFDPADALKLIE---QERVTSLFATPTH 253
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+ + A A L F A M P + +R
Sbjct: 254 LDALAAAAEGAPLKLDSLEHVTFAGA------TM-----PDAVLER-------------- 288
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473
+ G YG TE ++ L D +G P E
Sbjct: 289 -----------------VNQHLPGEKVNIYGTTEA---MNSLYMRDPRTGTEMRPGFFSE 328
Query: 474 IKLVDVPEMNYTSEDQPCPRGE----ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
+++V + S D+ P GE + F GY T E + +DGW+ T D+
Sbjct: 329 VRIVRIGG----SPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDV 383
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ P G ++I+ R ++ ++ GE I ++E V + V + V G
Sbjct: 384 AVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIG 431
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 51/188 (27%), Positives = 69/188 (36%), Gaps = 57/188 (30%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFG------GRVTEGYGMTETSCLIS---------- 453
R +GA P+ D L+ F + F YG+ E + +S
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE-RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVV 328
Query: 454 -QLDEGDNLSGHV----------------GSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
++D G G P E+++VD PE +P P
Sbjct: 329 LRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPLPDGEV 382
Query: 494 GEICVRGPLIFKGYYKDEIQTKEV------IDEDGWFHTGDIGMWIPG-----GRLK--I 540
GEI VRGP + GY+ T E DE GW TGD+G G GRLK I
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELYVTGRLKDLI 442
Query: 541 IDRKKNIF 548
I R +N +
Sbjct: 443 IIRGRNHY 450
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV-GSP-NAA 471
R + G + LS + + G ++ + +GM E ++LD+ + H G P +
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD 367
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P GE+ RGP +GYY+ D DG++ +GD
Sbjct: 368 DEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD 420
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
+ P G L + R K+ GE IAAE++EN
Sbjct: 421 LVRRDPDGYLVVEGRVKDQINRG-GEKIAAEEVEN 454
|
Length = 542 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 86/380 (22%), Positives = 135/380 (35%), Gaps = 82/380 (21%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSD 298
L + +P P I TSGTTGTPKGA S G A L T + +
Sbjct: 182 LIAAHAGQRP--EPTGRKGRVILLTSGTTGTPKGARRS-GPGGIGTLKAILDRTPWRAEE 238
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLY 354
+ P+ H + + V+ + F + L+D R T VP ++
Sbjct: 239 PTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLID---RHRATGLAVVPVMF 295
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR-V 413
+RI + +++++ GR +
Sbjct: 296 DRIMD-----------------------------------------LPAEVRNRYSGRSL 314
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNA 470
RF + S + PDV+ FG + Y TE +I+ D L G P
Sbjct: 315 RFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG-MIATATPAD-LRAAPDTAGRPAE 372
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
EI+++D + + P GE I VR F GY TK+ DG+ +G
Sbjct: 373 GTEIRILD-------QDFREVPTGEVGTIFVRNDTQFDGYTSG--STKDFH--DGFMASG 421
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSA 584
D+G GRL ++ R + ++ GE + ++E A V + V G + +
Sbjct: 422 DVGYLDENGRLFVVGRDDEMI-VSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQR 480
Query: 585 LVAIV------SVDQDALKA 598
L A V S + LK
Sbjct: 481 LAAFVVLKPGASATPETLKQ 500
|
Length = 537 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 232 QILTYSNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--- 287
Q + + L QGR +L+P P DD+A + YT GTTG KGA+L+HGNL+A++
Sbjct: 183 QAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRA 241
Query: 288 --ATLGTKFYP-----SDVYISYLPLAHIY 310
+ LG P +V I+ LPL HIY
Sbjct: 242 CLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271
|
Length = 562 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 67/280 (23%), Positives = 109/280 (38%), Gaps = 54/280 (19%)
Query: 347 FCSVPRLYNRIYAGITSAVR--TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
FC +P LY+ +G+ +R +GG +L Y K NPS + LV +
Sbjct: 164 FCVLP-LYH--VSGLMQFMRSFLTGG---KLVILPYKRLKSGQELPPNPSDFFLSLVPTQ 217
Query: 405 IKDKLGGRVRFMGS------GASPLSPDVLD---FLKICFGGRVTEGYGMTETSCLISQL 455
++ L R +++ G +P P +L+ L++ R+ YGMTET+ I+ L
Sbjct: 218 LQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQL----RLAPTYGMTETASQIATL 273
Query: 456 DEGDNLSGHVGS----PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE 511
D L+G+ S P+A I G I ++ + GYY
Sbjct: 274 KPDDFLAGNNSSGQVLPHAQITIP--------------ANQTGNITIQAQSLALGYY--- 316
Query: 512 IQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFV 571
+++D G F T D+G G L I+ R + GE + ++E V
Sbjct: 317 ---PQILDSQGIFETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLV 372
Query: 572 GQCFVYG--DS-FNSALVAIV-----SVDQDALKAWAASE 603
V G D + + AI S+ + LK +
Sbjct: 373 QDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQ 412
|
Length = 452 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYG+ + G+ G + L +NRPE L+ A L+
Sbjct: 38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97
Query: 174 PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D Y++ A + + P + L+ L+ VP+++ ++ +G P+ GV
Sbjct: 98 LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLG---------PVPDGVD 148
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292
+L + G + L + P D+A + YT GTTG PKG + +H + IA++A L
Sbjct: 149 LLAAAA--KFGPAPLVAAA--LPPDIAGLAYTGGTTGKPKGVMGTHRS-IATMAQIQLAE 203
Query: 293 KFYPSDVYISYL---PLAH 308
+P+D +L PL+H
Sbjct: 204 WEWPAD--PRFLMCTPLSH 220
|
Length = 524 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAA 471
R + A+P DV + +G + E YG TE+ ++ D LS G VG
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESG-AVTFATSEDALSHPGTVGKAAPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLI--FKGYYKDEIQTKEVIDEDGWFHT 526
E++ VD + +P P+ GEI R F + K E + + ID G+ +
Sbjct: 333 AELRFVD-------EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE--IDRGGFITS 383
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DS-FNS 583
GD+G G L + DRK+++ ++ G I +IE V V C V+G D+ F
Sbjct: 384 GDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGE 442
Query: 584 ALVAIV------SVDQDALKA 598
AL+A+V ++D+ ++A
Sbjct: 443 ALMAVVEPQPGATLDEADIRA 463
|
Length = 509 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-09
Identities = 50/147 (34%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA- 471
+R++G G + + V + LK G EGYG+TET ++Q H P+
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTET---MAQT--------HSNPPDRPK 355
Query: 472 --C-EIKLVDV------PEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEV-IDE 520
C I V PE T E+ P GEI V GP +FKGY+ T E I+
Sbjct: 356 LQCLGIPTFGVDARVIDPE---TLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI 412
Query: 521 DG--WFHTGDIGMWIPGGRLKIIDRKK 545
DG +F TGD+G G I DR K
Sbjct: 413 DGKRFFRTGDLGRMDEEGYFFITDRLK 439
|
Length = 546 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 16/224 (7%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + L G+ G + ++ N P++ IV + VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPSLPITTGVQ 232
+ Y +N A + + + Q + +E +R ++V D P+LP+ ++
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETS-LRHVIVTSLADVLPAEPTLPLPDSLR 178
Query: 233 ILTYS-----NLLS--QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--- 282
+ +LL + + P PP D +A + YT GTTG PKG + +++
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238
Query: 283 ASVAGATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSGVAV 325
A+ + V++S+LP I E + ++SG +
Sbjct: 239 AAAYAVAVVGG--EDSVFLSFLPEFWIAGENFGLLFPLFSGATL 280
|
Length = 567 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
KPDD ATI ++SG+ G PKG +LSH N+++++ + DV +S LP H
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834
|
Length = 1146 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV-GSPNAAC 472
F+ +GA P+ +++ G + +GMTE + +++ D+ + G P
Sbjct: 315 FLCAGA-PIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGV 373
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
E+K++D + +GE VRG F GY K D +GWF TGD+
Sbjct: 374 EVKVID-------ANGAKLSQGETGRLLVRGCSNFGGYLKRP--HLNSTDAEGWFDTGDL 424
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
G ++I R K++ + GE I +IEN+ + V Q +
Sbjct: 425 AFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 109/516 (21%), Positives = 178/516 (34%), Gaps = 99/516 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
++Y E + LI G+ +G+ E ++ V A AY VPL
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY----VPLD 593
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
D + Y+++ + V+ + L L VP + SL +
Sbjct: 594 PEYPQDRLAYMLDDSGVRLLLTQSHLLAQL-----PVP------------AGLRSLCLDE 636
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+L G S P PD++A + YTSG+TG PKG +SHG L V
Sbjct: 637 PADLL-------CGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA 689
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
L LA A+ M + S A
Sbjct: 690 ------------ERLQLA-----ADDSMLMVSTFAFDL---------------------G 711
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
V L+ + +G T + R+ AA A + + PS L+
Sbjct: 712 VTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPS-HLQALLQASRVALP 770
Query: 410 GGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLD----EGDNLSGH 464
+ + G + L D+L + G R+ YG TET+ +S + E D +
Sbjct: 771 RPQRALVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVP 829
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKE--VID 519
+G P A + ++D P P GE+ + G + +GY++ T E V D
Sbjct: 830 IGQPLANLGLYILD-------HYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPD 882
Query: 520 EDG-----WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQC 574
G + TGD+ + G ++ + R + K+ +G I +IE V +
Sbjct: 883 PFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREA 941
Query: 575 FV--YGDSFNSALVAIVSVDQ--DALKAWAASEGIQ 606
V LVA + D + A + ++
Sbjct: 942 VVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELK 977
|
Length = 3956 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-08
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 34/233 (14%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-- 449
PS + L+ L +R + G L +++ + ++ G R+ YG TET+
Sbjct: 192 PS-LLRALLDALEPAALPS-LRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVD 249
Query: 450 CLISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIF 504
++D D G V G P A + ++D + +P P GE+ + G +
Sbjct: 250 VTYHEVDPDDLDGGSVPIGRPIANTRVYVLD-------EDLRPVPVGVPGELYIGGAGVA 302
Query: 505 KGYYKDEIQTKE--VID---EDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
+GY T E V D G + TGD+ W+P G L+ + R + K+ G I
Sbjct: 303 RGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIR-GYRIE 361
Query: 558 AEKIENVYAKCKFVGQCFV---YGDSFNSALVA-IVS-----VDQDALKAWAA 601
+IE V + V + LVA +V +D L+A+ A
Sbjct: 362 LGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLA 414
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
+P+D A I +TSG+ G PKG V SH +L+A+V F P+D ++S LPL H
Sbjct: 361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFH 417
|
Length = 718 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R+R++ +GA L + FG R+ EGYG+TE + ++S G VG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE---------IQTKEVIDEDG 522
+ +L+ VP + E G + ++GP I GY + E + E G
Sbjct: 540 MDARLLSVPGI----EQG----GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERG 591
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN 582
W+ TGDI + G ++I R K K+A GE ++ E +E + Q S
Sbjct: 592 WYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDKQHATAIKSDA 650
Query: 583 S---ALVAIVS---VDQDALKAWAASEGIQSLA-PSD 612
S ALV + + ++ L+ +A G+ LA P D
Sbjct: 651 SKGEALVLFTTDSELTREKLQQYAREHGVPELAVPRD 687
|
Length = 718 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 52/178 (29%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGR------VTEGYGMTETSCLISQLDEG--------- 458
R G GA + PDVL F YG+ E + +S G
Sbjct: 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVD 361
Query: 459 -DNLSGH---VGSPNAA--------C-------EIKLVDVPEMNYTSEDQPCPR---GEI 496
D L V C EI++ + P P G I
Sbjct: 362 RDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-------EAGMPLPERVVGHI 414
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-----GRLK--IIDRKKNI 547
CVRGP + GY++DE V+ DGW TGD+G + G GR K II +NI
Sbjct: 415 CVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNI 471
|
Length = 579 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV--PLYDTL 172
TY E + + L G+ KG + ++ PE A ++ PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFA--LLGALKNGAIVGPLFEAF 132
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIGGIDDQIPSLPITTG 230
+AV+ + + + + T +LL ++P+++ ++++G ++ P
Sbjct: 133 MEEAVRDRLEDSEAKVLI----TTPALLERKPADDLPSLKHVLLVGEDVEEGP------- 181
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
L ++ L+ Q +D A + YTSG+TG PKG + H ++
Sbjct: 182 -GTLDFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY 239
Query: 291 GTKFYPSDVY 300
+ DVY
Sbjct: 240 VLDLHEDDVY 249
|
Length = 570 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 223 PSLPITTGVQILTYSNLLSQ------GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVL 276
LP+ G++ L +L Q G S+ P P ++A + YTSG+TG PKGA
Sbjct: 1683 ARLPLPDGLRSL----VLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGN 1738
Query: 277 SHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
HG L+ + + +DV + + A
Sbjct: 1739 RHGALVNRLCATQEAYQLSAADVVLQFTSFA 1769
|
Length = 3956 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 487 EDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG------------- 530
E + P GEICV GP +F GYY + + DGWF TGD+G
Sbjct: 357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415
Query: 531 ---MWIPGG 536
M+I GG
Sbjct: 416 ASDMYISGG 424
|
Length = 528 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKE--VIDEDG--WFHTGDIGMWIPGGRLKII 541
+ CP GE+ + G + GY+ D T E + G + TGD+G + P G ++ +
Sbjct: 319 RDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFL 378
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ--CFVYGDSFNSALVAIV------SVDQ 593
R + K+ +G + +IE A+ V + V GD AL A V +VD
Sbjct: 379 GRADHQVKI-RGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDA 437
Query: 594 DALKAWAA 601
L+A A
Sbjct: 438 AVLRAALA 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 207 PTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266
P+VR +V +GG + G T + LL G + P + PDD+A I +TSG
Sbjct: 135 PSVRRLVTVGG--------RLLWGGT--TLATLLRDGAAAPFPMADLAPDDMAAILFTSG 184
Query: 267 TTGTPKGAVLSHGNLIASV 285
+TGTPKG V +HG A +
Sbjct: 185 STGTPKGVVYTHGMFEAQI 203
|
Length = 552 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE + GL G+ +G + + N PE+ V A P+ L
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQ 232
+ YIV+ + + + ++ +E+P V L++V+ G +P G +
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG---PVP------GFR 122
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVA--TICYTSGTTGTPKGAV--LSHG----NLIAS 284
+Y L+ QP +P D+ A + Y+SGTTG PKG L
Sbjct: 123 --SYEEALAA-----QPDTPI-ADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMM 174
Query: 285 VAGATLGTKFYPSDVYISYLPLAH 308
+A G P VY+S PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307
P PDD+A + Y+SG+T P+G +++H L+A++ + G K P D +S+LP
Sbjct: 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228
Query: 308 H 308
H
Sbjct: 229 H 229
|
Length = 579 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL--ISQLDEGDNLSGHVGSPN 469
+R + G ++D R+ YG TE + S+L G ++ +G P
Sbjct: 209 SLRTLILGGEACPQALVDRWSKP--RRLLNTYGPTEATVTATASRLTPGKPVN--IGRPL 264
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW--- 523
++D P GE+C+ GP + +GY T E D +
Sbjct: 265 PNYTCWVLDPDLEP------LVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLN 318
Query: 524 ------FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ---C 574
+ TGD+ ++ G L+ + RK + K+ +G+ I +IE V V
Sbjct: 319 NPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEIEAVLRALPGVVVAAVV 377
Query: 575 FVYGDSFNSALVAIVSVDQDALK 597
+ D LVA ++VD A
Sbjct: 378 LLLDDPGGKQLVAFLAVDGAAGG 400
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 38/191 (19%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
G+ KG + L NRPE+L + LG AV ++N
Sbjct: 83 GVGKGDVVALLMENRPEYLAAWLGLA-----------KLG--AVVALLNTQ--------- 120
Query: 194 QTLNSLLSCLSEVPTVRLIV----------VIGGIDDQIPSLPIT--TGVQILTYSNL-- 239
Q L L+ V LIV + T Y +L
Sbjct: 121 QRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAA 180
Query: 240 LSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
+ G P S D A YTSGTTG PK AV+SH + ++ G + P
Sbjct: 181 AAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPD 240
Query: 298 DVYISYLPLAH 308
DV LPL H
Sbjct: 241 DVLYCCLPLYH 251
|
Length = 600 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
PDD+A + YTSG+TG PKG ++ H L+ +A
Sbjct: 92 PDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 418 SGASPLSPDVLDFLKICF--GGRVTEGYGMTET--SCLIS---QLDEG----DNLSGH-V 465
S +P+ V++ + + YG TE I L DN +G V
Sbjct: 295 SAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICV 354
Query: 466 GSPNAACEIKLVDVPE--MNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKE--VI 518
G P E++++ + + + + GEI V GP++ + YY T+ +
Sbjct: 355 GRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIP 414
Query: 519 DEDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY--IAAEKIENVY---AKCKFV 571
D G W GD+G GRL RK + + A G I E+I N + + V
Sbjct: 415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALV 474
Query: 572 G 572
G
Sbjct: 475 G 475
|
Length = 552 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
PDD A + YTSG+TG PKG V++H N+ +
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL 128
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 443 YGMTETSCLISQ-------LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
YG TE + ++ LD+ L +G + ++D E + + GE
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLP--IGYAKPDSPLLIID-EEGTKLPDGEQ---GE 346
Query: 496 ICVRGPLIFKGYYKDEIQTKEV-IDEDGW--FHTGDIG-----MWIPGGRLKIIDRKKNI 547
I + GP + KGY + +T E DG +HTGD G + GR ID
Sbjct: 347 IVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGR---ID----- 398
Query: 548 F--KLAQGEYIAAEKIENVYAKCKFVGQCFV 576
F KL G I E+IE + +V V
Sbjct: 399 FQIKLN-GYRIELEEIEQNLRQSSYVESAVV 428
|
Length = 503 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
DQ+P + L Y+ L+ P +P A I +TSG+TG PKG ++
Sbjct: 563 ADQLPRFADVPDLTSLCYNAPLA--PQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620
|
Length = 1296 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 223 PSLPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LPI G+ L +G P PD++A + YTSG+TG PKG +SHG+L
Sbjct: 4660 QRLPIPDGLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSL 4719
Query: 282 IASVAGATLGTKFYPSDVYISYLPLA 307
+ + + P D + ++ +
Sbjct: 4720 VNHLHATGERYELTPDDRVLQFMSFS 4745
|
Length = 5163 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LP+ G+ ++T L + K DD I +TSGTTG PKG +SH NL
Sbjct: 109 LPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNL 168
Query: 282 I 282
+
Sbjct: 169 V 169
|
Length = 503 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
VR ++ G +++ ++ + V + + RS +PP A + T+G+T
Sbjct: 109 VRTVLSHGSHLERLRAVD--SSVTVHDLATAAHTNRS--ASLTPPDSGGPAVLQGTAGST 164
Query: 269 GTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAH 308
GTP+ A+LS G +++++ G A +G +DV S+LPL H
Sbjct: 165 GTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYH 205
|
Length = 525 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 251 SPPKPDDV---ATIC--YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
PP DDV + YTSGTTG PK AV+ H AGA P DV LP
Sbjct: 94 EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLP 153
Query: 306 LAHIYERANQVMTVYSGVAVG 326
L Y A +M V + G
Sbjct: 154 L---YHSAGGIMGVGQALLHG 171
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPN 469
+R + S PL+P+V+ + + G + + + TET + +I+ G +G P
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTG 527
E +++ T P GE+ ++ P +F+GY +E + DGW+ TG
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG 325
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D+ G + R ++ K A G + ++E+ + V + V G
Sbjct: 326 DLAYRDEDGYFWFVGRADDVIKTA-GHLVGPFEVESALMEHPAVAEAGVIG 375
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 74/321 (23%), Positives = 121/321 (37%), Gaps = 61/321 (19%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K + I +TSGTTG PK A SH +L + PSD+ + I
Sbjct: 172 KSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAA 231
Query: 313 ANQVMTVYSGVAVGFY----QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
+ + + A F + D ++ ++ T FCS P +Y
Sbjct: 232 IWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVY-------------- 277
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
R+ +Q + S K S +R +G PL+P+VL
Sbjct: 278 -----RML------VQQDLTSYKFKS------------------LRHCVTGGEPLNPEVL 308
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYG TET LI +G + G +G + +++++D N
Sbjct: 309 EQWKAQTGLDLYEGYGQTETG-LICANFKGMKIKPGSMGKASPPYDVQIIDD-NGNVLP- 365
Query: 488 DQPCPRGEICVR-GPL----IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
P G+I +R P +F Y + +T I D + TGD G+ G +
Sbjct: 366 --PGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVG 422
Query: 543 RKKNIFKLAQGEYIAAEKIEN 563
R ++ + G I ++E+
Sbjct: 423 RADDVI-NSSGYRIGPFEVES 442
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 39/193 (20%)
Query: 412 RVRFM-GSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SP 468
R+R M G+G L PD+ D + FG R+ E Y +E + + N G VG P
Sbjct: 315 RLRLMIGNG---LRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVF---NFDGTVGRVP 368
Query: 469 -NAACEIKLVDVPEMNYTSED---------QPCPRGEICVRGPLI--------FKGYYKD 510
A +V + + + + GE+ G LI F GY
Sbjct: 369 LWLAHPYAIV---KYDVDTGEPVRDADGRCIKVKPGEV---GLLIGRITDRGPFDGYTDP 422
Query: 511 EIQTKEVI-----DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY 565
E K+++ D WF+TGD+ G + +DR + F+ +GE +A ++EN
Sbjct: 423 EASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENAL 481
Query: 566 AKCKFVGQCFVYG 578
+ V + VYG
Sbjct: 482 SGFPGVEEAVVYG 494
|
Length = 600 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 63/235 (26%), Positives = 95/235 (40%), Gaps = 50/235 (21%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKIC--FG---GRVTEGYGMTETSCLIS----------- 453
G +R +G P+ D + F FG G YG+ E++C ++
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331
Query: 454 --QLDEGDNLSGH--VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIF 504
D+G H +G+P E+++ + D GEI +RG +
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRI--------SPGDGAAGVAGREIGEIEIRGASMM 383
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
GY ID D WF TGD+G + GG L + R K + +A G I +IE V
Sbjct: 384 SGYLGQA-----PIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVA-GRNIFPTEIERV 436
Query: 565 YAKCKFV--GQCFVYGDSFNSA----LVAIVSVDQDALKAWAASEGIQSLAPSDC 613
A+ + V G G SA ++A D +A A SE +Q +A S+C
Sbjct: 437 AAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPD--EAGARSEVVQRVA-SEC 488
|
Length = 525 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DDVA + TSGTTGTPKGA+L+ L AS A AT
Sbjct: 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTAS-ADAT 67
|
Length = 358 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 203 LSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262
+++ PT+R ++V G + L P P +VA
Sbjct: 148 VAKHPTLRHVIVAGEAEHPSVLE------------AALCHPAGLFTPAPPADAGEVAFFQ 195
Query: 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ GTTGTPK +H + SV + F VY+ LP AH +
Sbjct: 196 LSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243
|
Length = 542 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DG+V + TY E + SGL G+ KG +G+Y PE ++ A + I
Sbjct: 2 DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCV 192
+VP++ GPDAV + A + +
Sbjct: 59 AVPIFSGFGPDAVATRLQDAEAKVLITA 86
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHG---NLIASV 285
P PDD+A + +TSG+TG PKG +++H N I V
Sbjct: 119 PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 225 LPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
LP+ GV L + P +++A + YTSG+TG PKG +SHG L+A
Sbjct: 2114 LPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVA 2173
Query: 284 SVAGATLGTKFYPSDVYISYLPLA 307
A + P+D + ++ +
Sbjct: 2174 HCQAAGERYELSPADCELQFMSFS 2197
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 223 PSLPITTGVQILTYSN--LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
LP+ GVQ+L +G S P + P+++A + YTSG+TG PKGA H
Sbjct: 620 RKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 281 LIASV 285
L +
Sbjct: 680 LSNRL 684
|
Length = 5163 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGH-VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR 499
E YG +E S + + +DE + VG P ++++ + E Q G + V+
Sbjct: 284 EFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAG----EEVQKGEIGTVYVK 339
Query: 500 GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAE 559
P F GY + +E ++ DGW D+G G + I+ R+KN+ L G I E
Sbjct: 340 SPQFFMGYIIGGVLARE-LNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGINIFPE 397
Query: 560 KIENVYAKCKFVGQCFVYG--DSF-NSALVAIV--SVDQDALKAW 599
+IE+V + V + V G DS+ VAI+ S + LK++
Sbjct: 398 EIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSF 442
|
Length = 487 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 22/157 (14%)
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L G+ KG I ++ N + A + VP PD V Y+ + +A+
Sbjct: 49 LAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + + P + +V IGG + L +L G
Sbjct: 109 ICHADFPEHAAAVRAASPDLTHVVAIGGA-------RAGLDYEALVARHL---GA----- 153
Query: 250 FSPPKP-----DDVATICYTSGTTGTPKGAVLSHGNL 281
DD +TSGTTG PK AVL+HG +
Sbjct: 154 --RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQM 188
|
Length = 528 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC--SAYSFISVPLYDTL 172
TY E + G+ +G + ++ N +L V A S + V + L
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH--L 83
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P YIV+ + +A+ L+ + L + P VR +V+ G +
Sbjct: 84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEG--------- 134
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDV--ATICYTSGTTGTPKG--AVLSHGNLIASVAGA 288
+ Y+ ++ P + P D+ + Y+SGTTG PKG L +
Sbjct: 135 FVGYAEAVAG-----LP-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLT 188
Query: 289 TLGTKFYPSD---VYISYLPLAH 308
+ + VY+S PL H
Sbjct: 189 AFLQRLWGFRSDMVYLSPAPLYH 211
|
Length = 511 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD-----HACSAYSFISVPL 168
++Y E + LI G+ +G+ V R +IV A AY VPL
Sbjct: 3121 LSYAELNRRANRLAHRLIAIGVGPDVLVGVA-VERSVEMIVALLAVLKAGGAY----VPL 3175
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + Y++ + V+ + T LL LP
Sbjct: 3176 DPEYPRERLAYMIEDSGVKLLL----TQAHLLE----------------------QLPAP 3209
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
G LT L G S P + +++A + YTSG+TG PKG + HG L
Sbjct: 3210 AGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL 3262
|
Length = 3956 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
P+D A + +TSGTTG PKG + H ++A A A P DVY
Sbjct: 88 PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
DD A I YTSGTTG PKG V +H A
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAA 130
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 12/175 (6%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT-L 172
+TY E + GL+ G+ G + + N ++ + + L +T
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNH-RGFVLALYAAGKVGARIILLNTGF 133
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
+ + V+A+ LLS L RL G DD PS
Sbjct: 134 SGPQLAEVAAREGVKALV-YDDEFTDLLSALPP-DLGRLRAWGGNPDDDEPSGS-----T 186
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
T +L++ + P PPKP + + TSGTTGTPKGA + +A +AG
Sbjct: 187 DETLDDLIAGSSTAPLP-KPPKPGGI--VILTSGTTGTPKGAPRPEPSPLAPLAG 238
|
Length = 549 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 196 LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKP 255
+ + +P++ +VV+ + + L +S + F
Sbjct: 178 REKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLE--FERLPF 235
Query: 256 DDVATICYTSGTTGTPKGAVLSHG 279
D I Y+SGTTG PK V G
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAG 259
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA 283
PDD+A + YTSG+TG PKG + H N A
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS-CLISQLDEGDNLSGHVGSPNAA 471
++ + S LSP++ FG + YG TE + I+ ++ G VG P
Sbjct: 325 LKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKG 384
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+K++D PRG I V F+GY + K++I DG +GD
Sbjct: 385 VTVKILD-------ENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQII--DGLLSSGD 433
Query: 529 IGMWIPGGRLKIIDR 543
+G + G L + R
Sbjct: 434 VGYFDEDGLLFVDGR 448
|
Length = 549 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 80/428 (18%), Positives = 141/428 (32%), Gaps = 84/428 (19%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
P+ L+ + E +L+ + LP+ GVQ+L L +G N +P
Sbjct: 3139 PEYPEERLAYMLEDSGAQLL-----LSQSHLRLPLAQGVQVL----DLDRGDENYAEANP 3189
Query: 253 PK---PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
P+++A + YTSG+TG PKG + H L +
Sbjct: 3190 AIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM--------------------- 3228
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVF---CSVPRLYNRIYAGITSAVR 366
L L+ T F V L+ + +G +
Sbjct: 3229 --------------------QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLA 3268
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
R+ + + PS + L + G A P D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALP--AD 3326
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VGSPNAACEIKLVDVPEMNY 484
+ ++ G + YG TE + ++ + +G P A ++D
Sbjct: 3327 LQQ--QVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD------ 3378
Query: 485 TSEDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGW------FHTGDIGMWIPG 535
+P P G E+ + G + +GY+ T E D + + TGD+ +
Sbjct: 3379 -GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVD--- 592
G ++ I R + K+ +G I +IE + +V + V + +V D
Sbjct: 3438 GVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDEAG 3496
Query: 593 --QDALKA 598
++ALKA
Sbjct: 3497 DLREALKA 3504
|
Length = 5163 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
PQ LL L T+ +V+ G ++ +L L
Sbjct: 85 PQLPQPLLEELLPSLTLDFALVLEG-ENTFSALT------------SLHLQLVEGAHAVA 131
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
+P +AT+ TSG+TG PK AV + +AS G F D ++ LPL H+
Sbjct: 132 WQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DGT EY T+G+ A + + L G+ +G +G+Y PE I A +
Sbjct: 1 DGTREEY---TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFC 191
SVPL GPDAV++ + + + +
Sbjct: 58 SVPLSVLFGPDAVEHRLRDSGARVLVT 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG------NLIASVAGATLGTKFYPSDVYISYLPLAH 308
PDD A + YTSGTTG PKG +S N ++ + Y + +PL H
Sbjct: 86 PDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTY------TCMPLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-- 295
+L S S+ +P P A + YTSG+T TP G ++SH N+IA+ L + ++
Sbjct: 145 DLDSPRGSDARPRDLPST---AYLQYTSGSTRTPAGVMVSHRNVIANF--EQLMSDYFGD 199
Query: 296 -----PSDVYI-SYLPLAH 308
P D + S+LP H
Sbjct: 200 TGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 14/154 (9%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
GL G+ G C+ L N + +A +VP+ P+ + YI+ +
Sbjct: 24 AAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSG 83
Query: 186 VQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ + L+ L S L VPT I I + + P + +
Sbjct: 84 ARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA----IDWEGW 139
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
L+Q +P+ P ++ YTSGTTG PKG
Sbjct: 140 LAQQ----EPYDGPPVPQPQSMIYTSGTTGHPKG 169
|
Length = 509 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 443 YGMTE-----TSCLISQ--LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--- 492
YG TE TS I+Q LD+ L +G + ++D E +P P
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLP--IGFAKPDMNLFIMD-------EEGEPLPEGE 341
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVI--DEDGW-FHTGDIG-----MWIPGGRLKIIDRK 544
+GEI + GP + KGY + +T E E + TGD G GR +D +
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGR---LDFQ 398
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
KL G I E IE + ++ V
Sbjct: 399 ---IKL-HGYRIELEDIEFNLRQSSYIESAVV 426
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 28/144 (19%)
Query: 413 VRFMGSGASPLSPDV----LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVG 466
+R A+P +V +D+ +G + E Y +E ++ + D L+ G VG
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDW----WGPIIHEYYASSE-GGGVTVITSEDWLAHPGSVG 318
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG------YYKDEIQTKEVIDE 520
E++++D + P GEI G + F+ Y+ D +T +
Sbjct: 319 KA-VLGEVRILD-------EDGNELPPGEI---GTVYFEMDGYPFEYHNDPEKTAAARNP 367
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRK 544
GW GD+G G L + DRK
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRK 391
|
Length = 502 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNL--LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
L I G QI+T S L + K DD I YTSG+TG PKG +SH NL
Sbjct: 107 LSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNL 166
Query: 282 I 282
+
Sbjct: 167 V 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 82/357 (22%), Positives = 127/357 (35%), Gaps = 100/357 (28%)
Query: 250 FSPPKP--DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
+ PP+ D +A + YTSG+T P G ++H NL +V + D +S+LP
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H + + + G + M P F P + R A
Sbjct: 232 H---DMGLITVLLPALL-----GHYITFMS------PAAFVRRPGRWIRELA-------R 270
Query: 368 SGGLRERLFNAAYN-AKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLS 424
G F+AA N A + A G K+ P D + +K L +G+ P+S
Sbjct: 271 KPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD---LSNVKGLL--------NGSEPVS 319
Query: 425 PDVLDFLKICFG------GRVTEGYGMTETSCLIS----------------QLDEGDNLS 462
P + F + YGM E + +S +L+ G +
Sbjct: 320 PASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVE 379
Query: 463 GHVGSPNAACEIK-----------LVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKD 510
+PNA ++ +VD PE T+ + P + GEI + G I GY+
Sbjct: 380 VPADAPNAVAQVSAGKVGVSEWAVIVD-PE---TASELPDGQIGEIWLHGNNIGTGYWGK 435
Query: 511 EIQTKEVI-----------------DEDGWFHTGDIGMWIPG-----GRLK---IID 542
+T D+ W TGD G++ G GR+K IID
Sbjct: 436 PEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLVIID 492
|
Length = 631 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNL---SGHVGS 467
+R +G G S + F++ G R + YG++ET C L D+G + +G VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346
Query: 468 PNAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
P ++ L + T+ G + ++ P GY+ + +T EV+ DGW +
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVN 405
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ--CFVYGDSFNS 583
TGD+ G I R + + G IA ++++ + V + C+ D
Sbjct: 406 TGDLLERREDGFFYIKGRSSEMI-ICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFG 464
Query: 584 ALVAIVSVDQDALKAWAASEGIQSLA 609
ALV + V L AA ++A
Sbjct: 465 ALVGLAVVASAELDESAARALKHTIA 490
|
Length = 540 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 31/97 (31%)
Query: 249 PFSPPKP---DDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATLGTKFY----PSDV- 299
P+ P+P +D I YTSG+TG PKG V + G L+ A K+ P DV
Sbjct: 215 PYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV----YAATTFKYVFDIHPDDVY 270
Query: 300 -------------YISYLPLAHIYERANQVMTVYSGV 323
YI Y PLA+ A VM Y G
Sbjct: 271 WCTADIGWITGHSYIVYGPLAN---GATTVM--YEGA 302
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSH-----GNLIASVAGATLGTKFYPSDVYISYLP 305
S A YTSGTTG PK A +SH + + S+ G T DV + LP
Sbjct: 137 SGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLCGVT------ADDVVYTTLP 190
Query: 306 LAH 308
L H
Sbjct: 191 LYH 193
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 56/202 (27%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG---HVGSPN 469
+R + S L P + +G + GYG TE I L +L VG P
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IGALATPADLRDAPETVGKPV 351
Query: 470 AACEIKLVDVPEMNYTSEDQPC-PR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
A C ++++D ++P PR G I V G L Y K V+D G T
Sbjct: 352 AGCPVRILD-------RNNRPVGPRVTGRIFVGGELAGTRYTDG--GGKAVVD--GMTST 400
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNS 583
GD+G GRL I+ R+ ++ ++ GE + +EN A V V G + F
Sbjct: 401 GDMGYLDNAGRLFIVGREDDMI-ISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459
Query: 584 ALVAIV------SVDQDALKAW 599
L A V VD L+ +
Sbjct: 460 RLAAFVVLHPGSGVDAAQLRDY 481
|
Length = 516 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNL 281
P A + YTSG+TG PKG V+SHG +
Sbjct: 2332 PQHQAYLIYTSGSTGKPKGVVVSHGEI 2358
|
Length = 4334 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.94 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.89 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.79 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.63 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.52 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.86 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.19 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 97.94 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.93 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.56 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.24 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.31 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.01 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 86.58 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-110 Score=873.55 Aligned_cols=556 Identities=48% Similarity=0.808 Sum_probs=513.7
Q ss_pred CccccCCCCC-ccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcC
Q 007119 56 WNVYRSSRSP-LKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134 (617)
Q Consensus 56 ~~i~r~~~~~-~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~G 134 (617)
+.+||+...+ +++... ...+..|+++.|.+.+..+|+.++|+++...+ ..++|+|+||+|+.+++.++|++|+.+|
T Consensus 53 ~~~~~s~~~~~~~~~~~--~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG 129 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSC--PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLG 129 (691)
T ss_pred CCceeeeeccCCCCCCC--CCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence 4677777654 222221 24688999999999999999999999995444 4578999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEec-ccchHHHHhhccC--CCCceE
Q 007119 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV-PQTLNSLLSCLSE--VPTVRL 211 (617)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~-~~~~~~l~~~~~~--~~~~~~ 211 (617)
+++++.|||++.||+||+++.+||..+|.++||||++++++++.||+++++++++||+ ++.++.+++.... ++.+|.
T Consensus 130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~ 209 (691)
T KOG1256|consen 130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKA 209 (691)
T ss_pred CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999 6777888887774 788999
Q ss_pred EEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCC-CCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh-
Q 007119 212 IVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPF-SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT- 289 (617)
Q Consensus 212 iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~- 289 (617)
+|.+++..+..+..+...++.+++|+++++.|......+ .+++|+|.|.|+|||||||+|||||+||+|+++.+....
T Consensus 210 iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~ 289 (691)
T KOG1256|consen 210 IIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF 289 (691)
T ss_pred EEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence 999999888888888888999999999999997766655 488999999999999999999999999999999665321
Q ss_pred --cC---cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHH
Q 007119 290 --LG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (617)
Q Consensus 290 --~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~ 364 (617)
.. ......|+++|||||+|++++++....++.|+.++|+++|+..+.++|++++||++.+||++|+++++.++++
T Consensus 290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~ 369 (691)
T KOG1256|consen 290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQ 369 (691)
T ss_pred hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHH
Confidence 11 1223479999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHH-HHHhcCCCC--CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceec
Q 007119 365 VRTSGGLRERLFNAAYNAKK-QAMLSGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTE 441 (617)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~--~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~ 441 (617)
+++.+.+++++|++|++.|. +.+.+|... ..+||+++|+|+++.+|+++|.+++|+||+++++..+++..+||+|++
T Consensus 370 ~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~e 449 (691)
T KOG1256|consen 370 VQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLE 449 (691)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeee
Confidence 99999999999999999999 778888776 599999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC
Q 007119 442 GYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (617)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~ 521 (617)
+||+|||++.++...+++...+++|.|+|++++|++|+++++|.+.+. .|||||||++||+|||+||++|+++||+|
T Consensus 450 GYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~---~GEIcirG~~Vf~GYyK~p~~T~e~ideD 526 (691)
T KOG1256|consen 450 GYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS---KGEICVRGPNVFMGYYKDPEKTAEAIDED 526 (691)
T ss_pred cccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC---cceEEEecchhceeccCChHHHhhhhccc
Confidence 999999997777777777899999999999999999999999999997 89999999999999999999999999999
Q ss_pred CeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHH
Q 007119 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601 (617)
Q Consensus 522 gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~ 601 (617)
||+||||+|+||++|.|+|+||+||+||+++||||.|+.||+++.+.+.|.+++|+|++.+.+++|+|+|+++.+.+|+.
T Consensus 527 GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~ 606 (691)
T KOG1256|consen 527 GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAA 606 (691)
T ss_pred cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhhhcCCC
Q 007119 602 SEGIQSLAPSDCSMKT 617 (617)
Q Consensus 602 ~~~~~~~~~~~~~~~~ 617 (617)
++++...+.++|+|++
T Consensus 607 ~~~~~~~~eelc~n~~ 622 (691)
T KOG1256|consen 607 KDGVKGTFEELCRNLD 622 (691)
T ss_pred HccCchhHHHHhcChh
Confidence 8899999999999863
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-106 Score=802.33 Aligned_cols=570 Identities=38% Similarity=0.641 Sum_probs=528.7
Q ss_pred CceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEe--------ecCc------
Q 007119 42 GYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR--------VDGT------ 107 (617)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~--------~d~~------ 107 (617)
+++|++.....+.++.+|||..+.+++.+. +.+...|++++|++.++++.++.++++|.+ +||+
T Consensus 6 ~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~--~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~ 83 (678)
T KOG1180|consen 6 KYRVKAKPAANEHETAPYRNVRSFDGLVSP--PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYE 83 (678)
T ss_pred hcccccCCCCCCCCCccccccccCCCccCC--CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEe
Confidence 478888888777889999999886667754 567999999999999999999999999864 3443
Q ss_pred cCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccc
Q 007119 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC-IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (617)
Q Consensus 108 ~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~-V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (617)
.++|.|+||.|+.+++.++|++|.+.|++++++ |+|+++.+.+|+++++||++.+.++|.+|.+++.+.+.|.|+++++
T Consensus 84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~ 163 (678)
T KOG1180|consen 84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES 163 (678)
T ss_pred ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence 678999999999999999999999999998775 9999999999999999999999999999999999999999999999
Q ss_pred cEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCC----CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEE
Q 007119 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS----LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262 (617)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~ 262 (617)
+.+|++.+.++++......++.+++||++++.+..... .....++.+++|+++++.|+....++.++.|+|+|+||
T Consensus 164 ~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IM 243 (678)
T KOG1180|consen 164 TAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIM 243 (678)
T ss_pred eEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEE
Confidence 99999999999999888899999999999975432222 11346789999999999999876777777999999999
Q ss_pred eccCCCCCccEEEecHHHHHHHHHhhhcCc-ccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHH----
Q 007119 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGT-KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD---- 337 (617)
Q Consensus 263 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~---- 337 (617)
|||||||.|||||++|+|+++.+.+..... .+.+.|+++.||||+|++++.+.+.+++.|+.+++-+ +..|.+
T Consensus 244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S--~~TLtdts~k 321 (678)
T KOG1180|consen 244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSS--PLTLTDTSSK 321 (678)
T ss_pred EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCC--cceecccchh
Confidence 999999999999999999999998887664 7899999999999999999999999999999999954 333333
Q ss_pred -------HHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhC
Q 007119 338 -------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410 (617)
Q Consensus 338 -------~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g 410 (617)
++..+|||+|.+||.+|+++.+.+.+++...+.+.+.+|+.++.+|+..++.....++++|.++|+|+|..+|
T Consensus 322 i~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lG 401 (678)
T KOG1180|consen 322 IKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLG 401 (678)
T ss_pred hccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhC
Confidence 6778999999999999999999999999999999999999999999999987777789999999999999999
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCC
Q 007119 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (617)
Q Consensus 411 ~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~ 490 (617)
++||++++||+||+++..+|+..+++|++.+|||+||+++..+...+.+...|.+|.|+++++++++|.++++|...+.|
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P 481 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP 481 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeCccccccccCChhhhhcccCC-CC--eeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc
Q 007119 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDE-DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (617)
Q Consensus 491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-~g--w~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~ 567 (617)
|+|||||+|++|..|||+|||+|++.|.. || ||+|||+|++.+||.|.|+||+||++|+.+||||+++.||+.|+.
T Consensus 482 -PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s 560 (678)
T KOG1180|consen 482 -PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRS 560 (678)
T ss_pred -CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhc
Confidence 89999999999999999999999999977 89 999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCC-ChhhhhcCC
Q 007119 568 CKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQS-LAPSDCSMK 616 (617)
Q Consensus 568 ~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~ 616 (617)
+|.|..+||++++....+||+|||++..+..|+++.|+.. .|.++|+|+
T Consensus 561 ~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~ 610 (678)
T KOG1180|consen 561 SPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDK 610 (678)
T ss_pred CcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccH
Confidence 9999999999999999999999999999999999999985 999999985
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-92 Score=750.55 Aligned_cols=516 Identities=39% Similarity=0.595 Sum_probs=438.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++..++.+.++.+|+.+++... ..+.++.+||+|+.+++.++|++|++.|+.+||+|+|++.|++||+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~ 88 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL 88 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 5578999999999999998888765 35678999999999999999999999999779999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-HHHHhhccCCCCceEEEEECC----CCC-CCCCCCccCC
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-NSLLSCLSEVPTVRLIVVIGG----IDD-QIPSLPITTG 230 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-~~l~~~~~~~~~~~~iv~~~~----~~~-~~~~~~~~~~ 230 (617)
||+.+|++.||+|++.+++++.|+|++++++++|++.... ..+......++.+..++.... ... ..........
T Consensus 89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (613)
T COG1022 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168 (613)
T ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence 9999999999999999999999999999999999998544 444444443332221111111 000 0000000011
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc-cCCCcEEEEeCChHHH
Q 007119 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHI 309 (617)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~lPl~h~ 309 (617)
.....+ .+..... .....++.+||+|+|+|||||||.|||||+||+|+++.+........ +.++|+++|+||++|+
T Consensus 169 ~~~~~~-~~~~~~~--~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi 245 (613)
T COG1022 169 EGISLF-LIDSAGL--EGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHI 245 (613)
T ss_pred ccchhh-hhccccc--ccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHH
Confidence 111112 1111111 11225678999999999999999999999999999999999998886 9999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH--
Q 007119 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM-- 387 (617)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-- 387 (617)
+++++.......|+...++..++..+++++++++||++++||++|+.+.+.+.+++.+.+..++.+|++|+..+....
T Consensus 246 ~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 246 FERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 999986544444555555568999999999999999999999999999999999999999999999999998775433
Q ss_pred --hcCCCCC--chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCC
Q 007119 388 --LSGKNPS--PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463 (617)
Q Consensus 388 --~~~~~~~--~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (617)
..+.... ...|+|+|+|+++.+|+++|++++||++|++++..+++.. |+++.++||||||+++++++++.+...+
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~g 404 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVLG 404 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCcccC
Confidence 2222222 3478999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|.|+|++|+||+| .|||+||||+||+|||++|++|+++|++||||+|||+|.+|++|+|+|+||
T Consensus 405 tvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gR 470 (613)
T COG1022 405 TVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGR 470 (613)
T ss_pred CcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeec
Confidence 999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC--CChhhhhcCC
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ--SLAPSDCSMK 616 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~--~~~~~~~~~~ 616 (617)
+||+||+++|+||+|+.||+.+.++|.|.+++|+| +++.+++|+|+|+.+.+..|+..++.. ...+++++++
T Consensus 471 kK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~ 544 (613)
T COG1022 471 KKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELARDP 544 (613)
T ss_pred ccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCH
Confidence 99999999999999999999999999999999999 668999999999999999999988743 4677777664
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-91 Score=778.50 Aligned_cols=560 Identities=25% Similarity=0.406 Sum_probs=477.0
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHH
Q 007119 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120 (617)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~ 120 (617)
..|+..++.+..+++|.+||.....++ .+.....|+.++|.+.++++||++|+... + ...+++++||+|+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~ 98 (746)
T PTZ00342 28 KGYSEICEKATNENESSVYCMKDHKKK-----SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFF 98 (746)
T ss_pred ceeeeEecCCCCCCCCCceecCchhhc-----ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHH
Confidence 448999999999999999998776555 23457889999999999999999999753 1 11236789999999
Q ss_pred HHHHHHHHHHHHc---CCCCC-----------CEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccc
Q 007119 121 TARTEVGSGLIYH---GISKG-----------SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (617)
Q Consensus 121 ~~~~~lA~~L~~~---Gv~~g-----------d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (617)
+++.++|++|.+. |+++| |+|+|+++|++||+++++||+++|+++||+|++++++++.++|+++++
T Consensus 99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~ 178 (746)
T PTZ00342 99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL 178 (746)
T ss_pred HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence 9999999999974 99998 999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccchHHHHhhccCCCCceEEEEECCCCCCC-----------------CC-------------------------
Q 007119 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI-----------------PS------------------------- 224 (617)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~-----------------~~------------------------- 224 (617)
+++|++.+..+.+.+....++.++.+++++...... ..
T Consensus 179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (746)
T PTZ00342 179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL 258 (746)
T ss_pred CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999998888888887777788899999987532110 00
Q ss_pred ---------------CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh
Q 007119 225 ---------------LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289 (617)
Q Consensus 225 ---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~ 289 (617)
.....+..+..|+++.+.... ..+..+..++|+++|+|||||||.||||++||+|+++.+....
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~ 337 (746)
T PTZ00342 259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC 337 (746)
T ss_pred ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence 000112344556665543221 1223345789999999999999999999999999998886654
Q ss_pred cC--cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhc
Q 007119 290 LG--TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (617)
Q Consensus 290 ~~--~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~ 367 (617)
.. ......|++++++|++|++++...+.+++.|++++++++++..++++|++++||++++||++|++|++.+...+..
T Consensus 338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~ 417 (746)
T PTZ00342 338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINN 417 (746)
T ss_pred hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhh
Confidence 32 1233568999999999999998888889999999999889999999999999999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH--hHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccc
Q 007119 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGM 445 (617)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l--~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~ 445 (617)
.+.+++.+|++|+..+..... + ..+.+++.+ +|+++++.+|++||.+++||+|+++++.++|+..+|++++++||+
T Consensus 418 ~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGl 495 (746)
T PTZ00342 418 LPPLKRFLVKKILSLRKSNNN-G-GFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGL 495 (746)
T ss_pred cCHHHHHHHHHHHHHHHHhhc-C-CcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeecc
Confidence 899999999999998877543 2 244666665 799999999999999999999999999999999899999999999
Q ss_pred cccccccccCCCCCCCCCCcCCCC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCee
Q 007119 446 TETSCLISQLDEGDNLSGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524 (617)
Q Consensus 446 TE~~~~~~~~~~~~~~~~~vG~p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~ 524 (617)
||+++.++...+.+...+++|+|+ |+++++|+|+++...... .+.|||++|||++|.|||++|+.|+++|+.||||
T Consensus 496 TEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~---~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~ 572 (746)
T PTZ00342 496 TETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDT---LPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYF 572 (746)
T ss_pred CcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCC---CCceEEEEecCcccccccCChhhhhhhcCcCCcc
Confidence 999877776666667889999998 999999998665332222 2489999999999999999999999999889999
Q ss_pred eecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcC
Q 007119 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEG 604 (617)
Q Consensus 525 ~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~ 604 (617)
+|||+|++|+||+|+|+||+||+||+++|+||+|++||++|.+||.|.+|+|+|++...+++|+|+||++.+.+|+++++
T Consensus 573 ~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~ 652 (746)
T PTZ00342 573 KTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDN 652 (746)
T ss_pred cCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcC
Confidence 99999999999999999999999998899999999999999999999999999987677999999999999999998864
Q ss_pred ------CC-CChhhhhcC
Q 007119 605 ------IQ-SLAPSDCSM 615 (617)
Q Consensus 605 ------~~-~~~~~~~~~ 615 (617)
+. ..+++++.+
T Consensus 653 ~~~~~~i~~~~~~~~~~~ 670 (746)
T PTZ00342 653 MLESTGINEKNYLEKLTD 670 (746)
T ss_pred CccccccCcccHHHHhhh
Confidence 33 346665543
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-90 Score=776.78 Aligned_cols=576 Identities=83% Similarity=1.391 Sum_probs=510.5
Q ss_pred cCCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHH
Q 007119 40 EQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119 (617)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el 119 (617)
+..||++++++..++++.+||+...+.++.+.+++.+...|++++|+++++++||++|++++...++..+.++++||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el 84 (651)
T PLN02736 5 EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEA 84 (651)
T ss_pred ccCcceeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHH
Confidence 56699999999999999999999888888877777788899999999999999999999765212343456788999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHH
Q 007119 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199 (617)
Q Consensus 120 ~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l 199 (617)
.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..+.+
T Consensus 85 ~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~ 164 (651)
T PLN02736 85 GTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTL 164 (651)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred HhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHH
Q 007119 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHG 279 (617)
Q Consensus 200 ~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~ 279 (617)
..+...++.++.++.++.............+....+|+++.+.+.....+.....++|+++|+|||||||.||||++||+
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~ 244 (651)
T PLN02736 165 LSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHG 244 (651)
T ss_pred HHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecH
Confidence 77666777888888775432111111112345677899887655433223344578999999999999999999999999
Q ss_pred HHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHH
Q 007119 280 NLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (617)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~ 359 (617)
++++.+.+....+.+.++|++++++|++|++++...+.+++.|++++++++++..+++.|++++||+++++|++|+++.+
T Consensus 245 ~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~ 324 (651)
T PLN02736 245 NLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYD 324 (651)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHH
Confidence 99999888877788899999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCce
Q 007119 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v 439 (617)
.+...+...+.+++.+|+.++..+...+..+..+...++++++++++..+|+++|.+++||+++++++.++++..+|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~ 404 (651)
T PLN02736 325 GITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV 404 (651)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence 99989999999999999999999888888887777888999999999999999999999999999999999999899999
Q ss_pred eccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC
Q 007119 440 TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (617)
Q Consensus 440 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~ 519 (617)
+++||+||+++.++...+.+...+++|+|+|+++++|+|.+++.+...+.+++.|||+|+||++|.|||++|+.|++.|+
T Consensus 405 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~ 484 (651)
T PLN02736 405 LEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID 484 (651)
T ss_pred EEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence 99999999987776666666678899999999999999977766666666667899999999999999999999999998
Q ss_pred CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHH
Q 007119 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599 (617)
Q Consensus 520 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~ 599 (617)
.||||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|+..++.++|+||++++.+.+|
T Consensus 485 ~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~ 564 (651)
T PLN02736 485 EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAW 564 (651)
T ss_pred cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHH
Confidence 89999999999999999999999999999987899999999999999999999999999876789999999999999999
Q ss_pred HHHcCCC-CChhhhhcC
Q 007119 600 AASEGIQ-SLAPSDCSM 615 (617)
Q Consensus 600 ~~~~~~~-~~~~~~~~~ 615 (617)
++.+++. ..+.++|++
T Consensus 565 ~~~~~~~~~~~~~~~~~ 581 (651)
T PLN02736 565 AASEGIKYEDLKQLCND 581 (651)
T ss_pred HHHcCCCccCHHHHhcC
Confidence 9988776 466777765
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-90 Score=775.47 Aligned_cols=571 Identities=37% Similarity=0.632 Sum_probs=489.9
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEee--------cC------
Q 007119 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRV--------DG------ 106 (617)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~--------d~------ 106 (617)
.+++++++.+..++. +|||.... ++... +.++..|+.++|+++++++||++|++++... ++
T Consensus 25 ~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~--~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~ 99 (696)
T PLN02387 25 KKRGVPVDVGGEPGY--AIRNARFP-ELVET--PWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKL 99 (696)
T ss_pred ccceecCCCCCCCCC--ceecCccc-ccccc--CCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccc
Confidence 347888886655553 59999855 44433 3467899999999999999999999876321 22
Q ss_pred ccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccc
Q 007119 107 TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (617)
Q Consensus 107 ~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (617)
..++|+|+||+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||||++++++++.++|+++++
T Consensus 100 ~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~ 179 (696)
T PLN02387 100 HLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV 179 (696)
T ss_pred cCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCC-CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEecc
Q 007119 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265 (617)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TS 265 (617)
+++|++.+..+.+.+....++.++.++.+++....... .....++.+.+|+++...+...+.+...+.++|+++|+|||
T Consensus 180 ~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTS 259 (696)
T PLN02387 180 TTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTS 259 (696)
T ss_pred CEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecC
Confidence 99999988888888777777888999998764321110 01123456788999887665433334456789999999999
Q ss_pred CCCCCccEEEecHHHHHHHHHhhhcC-cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC----C-----hhhH
Q 007119 266 GTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----D-----NMKL 335 (617)
Q Consensus 266 GTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~----~-----~~~l 335 (617)
||||.||||++||+|+++.+...... ..+.++|++++++|++|++++...+.+++.|+++.+... + +..+
T Consensus 260 GTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~ 339 (696)
T PLN02387 260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGT 339 (696)
T ss_pred CCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCc
Confidence 99999999999999999888776544 357889999999999999999887778888988876331 1 2345
Q ss_pred HHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcC-----CCCCchhhHHhHHHHHHhhC
Q 007119 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-----KNPSPMWDRLVFNKIKDKLG 410 (617)
Q Consensus 336 ~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~l~~~~~~~~~g 410 (617)
++++++++||+++++|++|+++.+.+...+...+.+++.+|+.++..+...+... ...+.+||.++|+++++.+|
T Consensus 340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 419 (696)
T PLN02387 340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419 (696)
T ss_pred hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence 6789999999999999999999999888888889999999999999887766432 12347899999999999999
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCC
Q 007119 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (617)
Q Consensus 411 ~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~ 490 (617)
+++|.+++||+|+++++.++++..+|++++++||+||+++.++...+.+...+++|+|+|+++++|+|++++++...+.+
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~ 499 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP 499 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence 99999999999999999999998889999999999999877766666666789999999999999999888888777676
Q ss_pred CCcceEEEeCccccccccCChhhhhccc--CCCC--eeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHh
Q 007119 491 CPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566 (617)
Q Consensus 491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~--~~~g--w~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~ 566 (617)
.|.|||+||||++|+|||++|+.|+++| +++| ||+|||+|++|+||+|+|+||+||+||+++|+||+|++||++|.
T Consensus 500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~ 579 (696)
T PLN02387 500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS 579 (696)
T ss_pred CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence 6789999999999999999999999998 4456 99999999999999999999999999987899999999999999
Q ss_pred cCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC-CChhhhhcCC
Q 007119 567 KCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ-SLAPSDCSMK 616 (617)
Q Consensus 567 ~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~ 616 (617)
+||.|.+|+|+|++.+.+++|+|+|+++.+..|++++++. ..+.++|+++
T Consensus 580 ~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (696)
T PLN02387 580 VSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKE 630 (696)
T ss_pred cCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCH
Confidence 9999999999999988999999999999999999999886 5688888875
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-88 Score=759.03 Aligned_cols=558 Identities=39% Similarity=0.698 Sum_probs=464.1
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHH
Q 007119 52 DTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131 (617)
Q Consensus 52 ~~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~ 131 (617)
.+.++++||+......+.. +.+...|+.++|++.++++||++|+.++...++..++++++||+||.++++++|++|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~ 97 (666)
T PLN02614 21 RPSVGPVYRSIFAKDGFPN---PIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLR 97 (666)
T ss_pred CCCCCCcccCcccccccCC---CCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHH
Confidence 4667889999875555432 3456789999999999999999999865211222345778999999999999999999
Q ss_pred HcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccC-CCCce
Q 007119 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVR 210 (617)
Q Consensus 132 ~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~ 210 (617)
++|+++||+|+|+++|++||+++++||+++|+++||||+.++++++.+++++++++++|++.+....+...... .+.++
T Consensus 98 ~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~ 177 (666)
T PLN02614 98 SVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMK 177 (666)
T ss_pred HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999987765555433322 23467
Q ss_pred EEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc
Q 007119 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (617)
Q Consensus 211 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 290 (617)
.++.++.............++.+.+|++++..+.....+.....++|+++|+|||||||.||||++||+|+++.+.+...
T Consensus 178 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~ 257 (666)
T PLN02614 178 TVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR 257 (666)
T ss_pred EEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 77777542211000011123456788888765432222223456899999999999999999999999999987765443
Q ss_pred C-----cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHh
Q 007119 291 G-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (617)
Q Consensus 291 ~-----~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~ 365 (617)
. ..+.++|++++++|++|++++...+.+++.|++++++++++..+++++++++||+++++|++|+++++.+...+
T Consensus 258 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 337 (666)
T PLN02614 258 LLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKL 337 (666)
T ss_pred hccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHH
Confidence 3 25778999999999999999977667788999999988899999999999999999999999999999888888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHhcCCCC---CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceecc
Q 007119 366 RTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442 (617)
Q Consensus 366 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~ 442 (617)
...+.+++.+|+.++..+...++.+... .++++.++++++++.+|++||.+++||+++++++.++++...+++++++
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~ 417 (666)
T PLN02614 338 SDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQG 417 (666)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEee
Confidence 8888889999999998887766654322 3677889999999999999999999999999987655544335899999
Q ss_pred ccccccccccccCCCCC-CCCCCcCCCCcCeEEEEeecCCC--CCCCCCCCCCcceEEEeCccccccccCChhhhhcccC
Q 007119 443 YGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (617)
Q Consensus 443 YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~--~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~ 519 (617)
||+||+++.++...+.+ ...+++|+|+|+++++|+|++++ ..++.+ +.|||+||||++|.|||++|+.|+++|
T Consensus 418 YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g---~~GEl~vrGp~v~~GY~~~pe~T~~~f- 493 (666)
T PLN02614 418 YGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAST---PRGEICIRGKTLFSGYYKREDLTKEVL- 493 (666)
T ss_pred CchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCC---CCceEEEcCCcccccccCCHHHhhhhh-
Confidence 99999986555444433 35689999999999999996554 334444 489999999999999999999999999
Q ss_pred CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHH
Q 007119 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599 (617)
Q Consensus 520 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~ 599 (617)
.||||||||+|++|+||+|+|+||+||+||+++|+||+|++||++|.+||+|.+|+|+|++.+.+++|+|+|+++.+.+|
T Consensus 494 ~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~ 573 (666)
T PLN02614 494 IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERW 573 (666)
T ss_pred ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHH
Confidence 69999999999999999999999999999987899999999999999999999999999988889999999999999999
Q ss_pred HHHcCCCCChhhhhcCC
Q 007119 600 AASEGIQSLAPSDCSMK 616 (617)
Q Consensus 600 ~~~~~~~~~~~~~~~~~ 616 (617)
++++++.....++|+++
T Consensus 574 ~~~~~~~~~~~~~~~~~ 590 (666)
T PLN02614 574 AAENGVSGDYNALCQNE 590 (666)
T ss_pred HHhcCCCcCHHHHhcCH
Confidence 99999877777777764
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-88 Score=752.70 Aligned_cols=569 Identities=42% Similarity=0.700 Sum_probs=480.9
Q ss_pred ceEEcCCcCC-----CCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHH
Q 007119 43 YSVVLPEKLD-----TGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 117 (617)
Q Consensus 43 ~~~~~~~~~~-----~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~ 117 (617)
|++++.+... ++++++||+....+.+.. ..++..|++++|.+.++++|+++|++++...++..++++|+||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~ 80 (660)
T PLN02430 4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPP---IDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK 80 (660)
T ss_pred eeeeecccCCCCCCCCCCCCccccccccccccC---CCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence 5556653333 348899999876655532 34688999999999999999999998763223444578889999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchH
Q 007119 118 EAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN 197 (617)
Q Consensus 118 el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~ 197 (617)
|+.+++.++|++|.+.|+++||+|+|+++|++||+++++||+++|+++||+|++++++++.+++++++++++|++.....
T Consensus 81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~ 160 (660)
T PLN02430 81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK 160 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876443
Q ss_pred HHH-hhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEe
Q 007119 198 SLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVL 276 (617)
Q Consensus 198 ~l~-~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 276 (617)
... ......+.++.+|.++.............++..++|++++..+........+..++|+++|+|||||||.||||++
T Consensus 161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l 240 (660)
T PLN02430 161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240 (660)
T ss_pred HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence 322 2223355678888886533211111112245568899988766543333344578999999999999999999999
Q ss_pred cHHHHHHHHHhhhcC-----cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeech
Q 007119 277 SHGNLIASVAGATLG-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP 351 (617)
Q Consensus 277 th~~l~~~~~~~~~~-----~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP 351 (617)
||+|+++.+.+.... ..+.++|++++++|++|++++...+.+++.|+++++++.++..+++++++++||++.++|
T Consensus 241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP 320 (660)
T PLN02430 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP 320 (660)
T ss_pred ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence 999999887664321 246789999999999999999887778999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC---CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHH
Q 007119 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428 (617)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~ 428 (617)
++|+++++.+...+...+.+++.+|+.++..|...++.+.. ..+++|.++|+++++.+|+++|.+++||+++++++.
T Consensus 321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~ 400 (660)
T PLN02430 321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE 400 (660)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence 99999999999999888999999999999999988876543 246789999999999999999999999999999998
Q ss_pred HHHHHhhCCceeccccccccccccccCCCCC-CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccc
Q 007119 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGY 507 (617)
Q Consensus 429 ~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY 507 (617)
++++...+++++++||+||+++.++...+.+ ...+++|+|.++++++|+|++++++.+.+.+ +.|||+|+|++++.||
T Consensus 401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~-~~GEi~vrg~~v~~GY 479 (660)
T PLN02430 401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGY 479 (660)
T ss_pred HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCC-CcceEEecCCCccccc
Confidence 8887654578999999999987666554443 4579999999999999999777766554432 3799999999999999
Q ss_pred cCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEE
Q 007119 508 YKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVA 587 (617)
Q Consensus 508 ~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va 587 (617)
|++|+.|+++| .||||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.+++++|
T Consensus 480 ~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A 558 (660)
T PLN02430 480 YKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVA 558 (660)
T ss_pred cCChHHhhhhh-hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEE
Confidence 99999999999 79999999999999999999999999999988899999999999999999999999999876789999
Q ss_pred EEEeCHHHHHHHHHHcCCCCChhhhhcCC
Q 007119 588 IVSVDQDALKAWAASEGIQSLAPSDCSMK 616 (617)
Q Consensus 588 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (617)
+|+|+++.+.+|++++++...+.++|+++
T Consensus 559 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (660)
T PLN02430 559 VVVPNEENTNKWAKDNGFTGSFEELCSLP 587 (660)
T ss_pred EEEcCHHHHHHHHHhCCCCCCHHHHhcCH
Confidence 99999999999999998876777777664
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-88 Score=754.46 Aligned_cols=559 Identities=42% Similarity=0.724 Sum_probs=469.7
Q ss_pred CCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHH
Q 007119 51 LDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGL 130 (617)
Q Consensus 51 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L 130 (617)
..++++++||+....+.+.+. .++..|++++|.+.++++|+++|++.+...++..++++++||+||.++++++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L 94 (660)
T PLN02861 18 GKPSAGPVYRSIYAKDGLLDL---PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAI 94 (660)
T ss_pred CCCCCCCcccccccccccccC---CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHH
Confidence 346678999999877766543 35788999999999999999999987532233345678899999999999999999
Q ss_pred HHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCC-Cc
Q 007119 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TV 209 (617)
Q Consensus 131 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-~~ 209 (617)
.++|+++||+|+|+++|++||+++++||+++|+++|||+++++.+++.++|++++++++|++....+.+......++ .+
T Consensus 95 ~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l 174 (660)
T PLN02861 95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNL 174 (660)
T ss_pred HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998877666655554443 57
Q ss_pred eEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh
Q 007119 210 RLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289 (617)
Q Consensus 210 ~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~ 289 (617)
+.++.++.............+....+|+++...+... ....+..++|+++|+|||||||.||||++||+|+++.+....
T Consensus 175 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~ 253 (660)
T PLN02861 175 KTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD 253 (660)
T ss_pred EEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHH
Confidence 8888876532110000111234567888887654321 222345689999999999999999999999999998876654
Q ss_pred cCcc-----cCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHH
Q 007119 290 LGTK-----FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (617)
Q Consensus 290 ~~~~-----~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~ 364 (617)
..+. +.++|++++++|++|++++...+.+++.|++++++++++..++++|++++||+++++|++|+++++.+...
T Consensus 254 ~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 333 (660)
T PLN02861 254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQK 333 (660)
T ss_pred hccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHH
Confidence 4332 46789999999999999988777789999999998889999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHhcCCCC---CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-cee
Q 007119 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVT 440 (617)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~ 440 (617)
+...+.+++.+|++++..+...+..+... .+.++.++++++++.+|+++|.+++||+++++++.++++ .++. .++
T Consensus 334 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~ 412 (660)
T PLN02861 334 ISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLS 412 (660)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCee
Confidence 99999999999999999998877655322 356788899999999999999999999999999876554 4554 799
Q ss_pred ccccccccccccccCCCCC-CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC
Q 007119 441 EGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (617)
Q Consensus 441 ~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~ 519 (617)
++||+||+++.++.....+ ...+++|+|+|+++++|+|++++++.... +++.|||+||||++|.|||++|+.|+++|
T Consensus 413 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~-~~~~GEi~vrGp~v~~GY~~~pe~T~~~f- 490 (660)
T PLN02861 413 QGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALS-DVPRGEICLRGNTLFSGYHKRQDLTEEVL- 490 (660)
T ss_pred EecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCC-CCCceeEEEcCCcccccccCCHHHHHhhh-
Confidence 9999999987655443332 35689999999999999996554432211 23589999999999999999999999999
Q ss_pred CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHH
Q 007119 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599 (617)
Q Consensus 520 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~ 599 (617)
.||||+|||+|++|+||+|+|+||+||+||+++|+||+|++||++|.+||.|.+|+|+|++.++.++|+||++++.+.+|
T Consensus 491 ~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~ 570 (660)
T PLN02861 491 IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDW 570 (660)
T ss_pred hccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHH
Confidence 69999999999999999999999999999988899999999999999999999999999987789999999999999999
Q ss_pred HHHcCCCCChhhhhcCC
Q 007119 600 AASEGIQSLAPSDCSMK 616 (617)
Q Consensus 600 ~~~~~~~~~~~~~~~~~ 616 (617)
++++++...+.++|+++
T Consensus 571 ~~~~~~~~~~~~~~~~~ 587 (660)
T PLN02861 571 AANNNKTGDFKSLCKNL 587 (660)
T ss_pred HHHcCCCCCHHHHhcCH
Confidence 99988765667776653
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=732.89 Aligned_cols=565 Identities=33% Similarity=0.545 Sum_probs=475.2
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCcccccc-CCCCCCCCCHHHHHHHHHHhcCCCccEEEEEe----------ecCc--
Q 007119 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSR-FPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR----------VDGT-- 107 (617)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~-~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~----------~d~~-- 107 (617)
..+++++++..++.++++||+....+..... ....++..|++++|.++++++||++|++++.. .++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~ 109 (700)
T PTZ00216 30 GPQNVPVPGTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKER 109 (700)
T ss_pred CCcceecCCCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccc
Confidence 4478999988888889999987644321111 11234678999999999999999999998621 0111
Q ss_pred ------cCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH
Q 007119 108 ------VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181 (617)
Q Consensus 108 ------~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 181 (617)
.++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+|+.++++++.+++
T Consensus 110 ~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 189 (700)
T PTZ00216 110 TMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYAL 189 (700)
T ss_pred cccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhh
Confidence 13578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccEEEecccchHHHHhhccC--CCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCc--cCCC-CCCCCCCC
Q 007119 182 NHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGR--SNLQ-PFSPPKPD 256 (617)
Q Consensus 182 ~~~~~~~vi~~~~~~~~l~~~~~~--~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~ 256 (617)
++++++++|++......+...... .+.. .++.++..... ....+..+++|++++..+. .... ...+..++
T Consensus 190 ~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (700)
T PTZ00216 190 RETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENND 264 (700)
T ss_pred hccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcc
Confidence 999999999998766665544432 2333 46666543211 1223556789999987652 1111 12345689
Q ss_pred CeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCc-----ccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCC
Q 007119 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD 331 (617)
Q Consensus 257 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~ 331 (617)
|+++|+|||||||.||||++||+|+++.+.+....+ .+.++|++++++|++|++++......++.|+++++ ++
T Consensus 265 d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~--~~ 342 (700)
T PTZ00216 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GS 342 (700)
T ss_pred cEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE--CC
Confidence 999999999999999999999999998877655432 24678999999999999998877677888888877 56
Q ss_pred hhhHHH-------HHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHH
Q 007119 332 NMKLMD-------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404 (617)
Q Consensus 332 ~~~l~~-------~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~ 404 (617)
+..+.+ ++++++||++.++|++|+++.+.+...+...+.+++.+|+.++..+...+..+. ..++++.++|++
T Consensus 343 ~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~v~~~ 421 (700)
T PTZ00216 343 PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK-DTPYWNEKVFSA 421 (700)
T ss_pred HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHH
Confidence 666665 789999999999999999999999888888899999999999999988877654 346899999999
Q ss_pred HHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCC
Q 007119 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484 (617)
Q Consensus 405 ~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~ 484 (617)
+++.+|+++|.+++||+++++++.++++..++ +++++||+||+++.++.....+...+++|+|+++++++|+|.++..
T Consensus 422 ~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~- 499 (700)
T PTZ00216 422 PRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYK- 499 (700)
T ss_pred HHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhc-
Confidence 99999999999999999999999999988888 9999999999987766665566678999999999999999965422
Q ss_pred CCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHH
Q 007119 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564 (617)
Q Consensus 485 ~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~ 564 (617)
..+.+.+.|||+|+|++++.|||++|+.|+++|+.||||||||+|++|+||+|+|+||+||+||+++|++|+|++||++
T Consensus 500 -~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~ 578 (700)
T PTZ00216 500 -HTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEAL 578 (700)
T ss_pred -cCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHH
Confidence 2233345899999999999999999999999999999999999999999999999999999999779999999999999
Q ss_pred HhcCCCcce--EEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCCChhhhhcCC
Q 007119 565 YAKCKFVGQ--CFVYGDSFNSALVAIVSVDQDALKAWAASEGIQSLAPSDCSMK 616 (617)
Q Consensus 565 l~~~p~V~~--~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (617)
|.+||.|.+ ++|++.+++.+++|+|+|+++.+.+|++++++...++++|+++
T Consensus 579 l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (700)
T PTZ00216 579 YGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDP 632 (700)
T ss_pred HhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCH
Confidence 999999997 5777778789999999999999999999999887888888875
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=617.40 Aligned_cols=461 Identities=30% Similarity=0.438 Sum_probs=385.1
Q ss_pred HhcCCC-ccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEE
Q 007119 90 DTFRDY-KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG--ISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166 (617)
Q Consensus 90 ~~~pd~-~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~G--v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~v 166 (617)
..++++ +.+++. +.. .+.+||+|+.+++.++|++|.++| +++||+|+|+++|++++.++++||+..|++..
T Consensus 27 ~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~ 100 (537)
T KOG1176|consen 27 FVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLN 100 (537)
T ss_pred cccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccc
Confidence 344444 667654 211 145999999999999999999876 89999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee-HHHHHhcCcc
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT-YSNLLSQGRS 245 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 245 (617)
|+||.+.+.++.+.+++++++++|++....+++.+....+. ..++++........ ......... +.++...+..
T Consensus 101 ~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 175 (537)
T KOG1176|consen 101 PLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVIS---ISDLVEDLDAFEDLMPEGLP 175 (537)
T ss_pred ccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCccc---cccccccccchhhccccCCC
Confidence 99999999999999999999999999999999887776554 33444433211000 001111122 4444443332
Q ss_pred CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH-HHHhCcE
Q 007119 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVA 324 (617)
Q Consensus 246 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~-~l~~G~~ 324 (617)
.. ..+.+.+|++.|+|||||||.||||++||++++...........+...|+.++.+|++|++|+...+. .+..|++
T Consensus 176 ~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ 253 (537)
T KOG1176|consen 176 DG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTT 253 (537)
T ss_pred cc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCce
Confidence 22 45667899999999999999999999999999998877666677777999999999999999999877 5666666
Q ss_pred EEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHH
Q 007119 325 VGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403 (617)
Q Consensus 325 ~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~ 403 (617)
+++.+ +++..+++.+++|++|+++++|.++..|.+.. ..
T Consensus 254 ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p----------------------------------~~------ 293 (537)
T KOG1176|consen 254 IICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSP----------------------------------IV------ 293 (537)
T ss_pred EEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCC----------------------------------cc------
Confidence 66666 69999999999999999999999999987731 00
Q ss_pred HHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC-CceeccccccccccccccCCCCC-CCCCCcCCCCcCeEEEEeecCC
Q 007119 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPE 481 (617)
Q Consensus 404 ~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~ 481 (617)
.....+++|.+.+||+++++++.+.+++.++ ..+.++|||||+++.++.+...+ .+++++|.++++.++++.+ +.
T Consensus 294 --~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~ 370 (537)
T KOG1176|consen 294 --KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ET 370 (537)
T ss_pred --CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CC
Confidence 0111269999999999999999999999998 88999999999998777766555 4899999999988888887 67
Q ss_pred CCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHH
Q 007119 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561 (617)
Q Consensus 482 ~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~I 561 (617)
+..++.++ .||||+||+++|+|||+||++|++.|+++|||||||+|++|+||+|+|+||+||+||. +|++|+|.||
T Consensus 371 g~~l~~~~---~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~Ei 446 (537)
T KOG1176|consen 371 GVSLGPNQ---TGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAEI 446 (537)
T ss_pred CCCCCCCC---ceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHHH
Confidence 77777776 8999999999999999999999999988899999999999999999999999999996 9999999999
Q ss_pred HHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHcCCCCChh
Q 007119 562 ENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASEGIQSLAP 610 (617)
Q Consensus 562 E~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~~~~~~~~~~~~~~~~ 610 (617)
|++|.+||.|.||||+|.+++ +.++|+||.++ +++.+|++++...++++
T Consensus 447 E~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~ 504 (537)
T KOG1176|consen 447 EAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLP 504 (537)
T ss_pred HHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhcc
Confidence 999999999999999999976 68999999854 89999999987765443
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=574.45 Aligned_cols=474 Identities=23% Similarity=0.336 Sum_probs=407.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++++-.+++.||+.|+++.. .+ .++||+|+.+.++++|++|..+|+++||+|+|+.+|+.+|+...+
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l 120 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL 120 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence 56799999999999999999998861 22 348999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc-----hHHHHhhcc-------------CCCCceEEEEECCC
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLS-------------EVPTVRLIVVIGGI 218 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~-------------~~~~~~~iv~~~~~ 218 (617)
||.++|.+.|++||.+..+++++.|+..+++++|+.... .+.+.++.+ .+|.+.++|..++.
T Consensus 121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 999999999999999999999999999999999997543 233433332 35678888887743
Q ss_pred CCCCCCCCccCCceEeeHHHHHhcCccCCC-----CCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc
Q 007119 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQ-----PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293 (617)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~ 293 (617)
.. -...+.++|++..+..... ......|||++.|.|||||||.|||+.+||-|++++.......++
T Consensus 201 ~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g 271 (596)
T KOG1177|consen 201 HP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG 271 (596)
T ss_pred Cc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence 21 1234678888876654211 123467899999999999999999999999999999998888899
Q ss_pred cCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCc
Q 007119 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (617)
Q Consensus 294 ~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~ 370 (617)
+...++++...|++|++|... .+.++..|++++|+. +++...++.|.++|+|.++++|++|..+++.-+.
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~------- 344 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQK------- 344 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhh-------
Confidence 999999999999999999665 678999999999976 8999999999999999999999999998863111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccc
Q 007119 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS 449 (617)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~ 449 (617)
+....+++|-++.||+|+|+++++.+...++. .+..+||+||++
T Consensus 345 -----------------------------------~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts 389 (596)
T KOG1177|consen 345 -----------------------------------QQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETS 389 (596)
T ss_pred -----------------------------------ccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccC
Confidence 11112589999999999999999999987654 488899999999
Q ss_pred cccccCCCCC---CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeee
Q 007119 450 CLISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (617)
Q Consensus 450 ~~~~~~~~~~---~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~T 526 (617)
...+...++| ....++|..+++.|.+|+| .++...+.+. .||||+||+++|.|||+++++|+++.++|.||+|
T Consensus 390 ~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~---~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~T 465 (596)
T KOG1177|consen 390 PVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT---KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDT 465 (596)
T ss_pred cceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCC---CceEEEEechhheeecCCcccchhhcccccceec
Confidence 8887776666 4567999999999999999 6666677776 6999999999999999999999999999999999
Q ss_pred cceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe--------CHHH
Q 007119 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV--------DQDA 595 (617)
Q Consensus 527 GDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~--------~~~~ 595 (617)
||+|.+|++|+++|+||.||+|+ ++||+|+|.|||+.|.+||.|.++.|+|.+|+ +.++|.|-+ ..|+
T Consensus 466 GDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~ 544 (596)
T KOG1177|consen 466 GDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAET 544 (596)
T ss_pred CceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHH
Confidence 99999999999999999999999 69999999999999999999999999999876 467788765 4588
Q ss_pred HHHHHHHcCCCCChhhhh
Q 007119 596 LKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~ 613 (617)
++.||+.+...+++|+++
T Consensus 545 lKa~Ck~klaHFKiPky~ 562 (596)
T KOG1177|consen 545 LKAMCKGKLAHFKIPKYF 562 (596)
T ss_pred HHHHHhcccccccCCcEE
Confidence 999999884446777653
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-73 Score=617.32 Aligned_cols=474 Identities=30% Similarity=0.445 Sum_probs=396.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
....++.+.+.++++++|+++|+.+. +... .+||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 35679999999999999999999875 3321 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++||+|.+..+++.++++++++++++++....+.+.......+....++......... . .+
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~ 150 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL---------P-IT 150 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc---------c-cc
Confidence 9999999999999999999999999999999999999885555555444333333333322211000 0 24
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc--cCCCcEEEEeCChHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~lPl~h~~~~~ 313 (617)
++++...............++|+++|+|||||||.||||++||+|++.+.......+. +.+.|++++++|++|++|+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~ 230 (534)
T COG0318 151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLI 230 (534)
T ss_pred HHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHH
Confidence 5565333222222222367899999999999999999999999999999888877777 89999999999999999999
Q ss_pred HHHH-HHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 314 NQVM-TVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 314 ~~~~-~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
..+. .++.|+++++.+ +++..++..+.++++|++.++|+++..+++.....
T Consensus 231 ~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~------------------------- 285 (534)
T COG0318 231 VGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD------------------------- 285 (534)
T ss_pred HHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC-------------------------
Confidence 8665 599999999987 79999999999999999999999999987631100
Q ss_pred CCCCCchhhHHhHHHHHHhhCC-ceEEEEEcCCCCcHHHHHHHHHhhC-CceeccccccccccccccCCCCC--CCCCCc
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGG-RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD--NLSGHV 465 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~-~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~--~~~~~v 465 (617)
+.... +||.+++||+++++++.+.+++.|+ ..++++||+||+++.++.....+ ...+++
T Consensus 286 -----------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 348 (534)
T COG0318 286 -----------------DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSV 348 (534)
T ss_pred -----------------ccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcc
Confidence 00001 4999999999999999999999997 47999999999998777666555 467888
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCC
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
|.|+|+++++|+|.++....+ ++ .|||+||||+++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||.|
T Consensus 349 G~~~pg~~v~Ivd~~~~~~~p-g~---vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~k 424 (534)
T COG0318 349 GRPLPGVEVRIVDPDGGEVLP-GE---VGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLK 424 (534)
T ss_pred cccCCCcEEEEEeCCCCccCC-CC---ceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccc
Confidence 999999999999966554444 43 89999999999999999999999999667999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHHcCCCCChhhhh
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~~~~~~~~~~~~~~~~~~~ 613 (617)
|+|+ ++|+||+|.|||+++.+||.|.+|+|+|.+++ +.++|+|+++ ++++.+|++++...+++|+.+
T Consensus 425 d~I~-~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v 502 (534)
T COG0318 425 DLII-SGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIV 502 (534)
T ss_pred eEEE-eCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEE
Confidence 9999 59999999999999999999999999999865 6899999974 688999999866556766544
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=635.02 Aligned_cols=503 Identities=19% Similarity=0.331 Sum_probs=420.7
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 007119 67 KLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146 (617)
Q Consensus 67 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 146 (617)
.+...|++.+...|+.++|.+.++++|+++|+..+ . ..++++++||+|+.+++.++|++|.++|+++||+|+|+++
T Consensus 415 ~~~~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~ 490 (1452)
T PTZ00297 415 NLPREYNPLAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490 (1452)
T ss_pred hhhhcCCCcccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 45566888899999999999999999999999753 1 1245788999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCC-CCCCC
Q 007119 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QIPSL 225 (617)
Q Consensus 147 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~-~~~~~ 225 (617)
|++||+++++||+++|+++||++++ .+++.+++++++++++|++.+..+.+.++.. +.++.||++++... .....
T Consensus 491 N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred CCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccc
Confidence 9999999999999999999999864 6799999999999999999888887776543 36889999864211 10011
Q ss_pred CccCCceEeeHHHHHhcCccCCC-CCCCCCCCCeEEEEe---ccCCCCCccEEEecHHHHHHHHHhhhcCc---ccCCCc
Q 007119 226 PITTGVQILTYSNLLSQGRSNLQ-PFSPPKPDDVATICY---TSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (617)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~d~a~i~~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d 298 (617)
....++.+++|+++++.+..... .....+++|++.|+| ||||||.||||++||+|+++.+.+..... ...++|
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D 646 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH 646 (1452)
T ss_pred cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence 11124567889999987753222 123347899999996 99999999999999999999988765422 356789
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 007119 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (617)
Q Consensus 299 ~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (617)
++++++||+|++++...+.+++.|+++++ +++..++++|++++||++++||++|+++.+.+.......+.+++++|++
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~ 724 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER 724 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999998888888999999976 5899999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCC--CCcHHHHHHHHHhhCCceeccccccccccccccCC
Q 007119 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS--PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (617)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga--~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~ 456 (617)
|+..|...+..+...+.++|+++|+++|+.+|+++|++++||+ +++..+.. ++++..+||+||+. +.+.
T Consensus 725 A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~ 795 (1452)
T PTZ00297 725 AFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPS 795 (1452)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecC
Confidence 9999887777776667899999999999999999999999984 55543333 57899999999953 3344
Q ss_pred CCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCC
Q 007119 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536 (617)
Q Consensus 457 ~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG 536 (617)
+.+... .|.|+|++|+||.++++..+. + ++|||+++ |++||+.|++.+ +||+ +||
T Consensus 796 ~~~~~~--~G~PlpgvEvKI~~~~E~~~~--~---~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG 850 (1452)
T PTZ00297 796 EGVFCV--DGTPAPSLQVDLEPFDEPSDG--A---GIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDR 850 (1452)
T ss_pred CCCccc--CCeecCceEEEEcccccccCC--C---CCCeEEEE-------ECCChHHHHHhh--CcCc---------cCC
Confidence 444433 399999999999987665432 1 37999996 458999999854 6775 699
Q ss_pred cEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHH-HHHHHcCCCC--------
Q 007119 537 RLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK-AWAASEGIQS-------- 607 (617)
Q Consensus 537 ~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~-~~~~~~~~~~-------- 607 (617)
+|+|+||+||+||+++||||+|+.||++|.++|.|.+++|+|++. ..++|+|+|+++.++ +|++++++..
T Consensus 851 ~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~ 929 (1452)
T PTZ00297 851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQL 929 (1452)
T ss_pred eEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCCccccccccC
Confidence 999999999999999999999999999999999999999999984 459999999999999 9999999752
Q ss_pred Chhhhhc
Q 007119 608 LAPSDCS 614 (617)
Q Consensus 608 ~~~~~~~ 614 (617)
.++++|+
T Consensus 930 ~~~el~~ 936 (1452)
T PTZ00297 930 GWTELVA 936 (1452)
T ss_pred CHHHHHH
Confidence 4566654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=588.32 Aligned_cols=464 Identities=22% Similarity=0.339 Sum_probs=370.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH
Q 007119 72 FPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW 151 (617)
Q Consensus 72 ~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 151 (617)
++......|+.++|.++++++||++|+.+. + ..+.++++||+||.++++++|++|.+.|+++||+|+|+++|++||
T Consensus 32 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~ 107 (614)
T PRK08180 32 EPLGDYPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEH 107 (614)
T ss_pred CCCCCcCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHH
Confidence 333445679999999999999999999764 2 223467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCCCC-----HHHHHHHHHhccccEEEecccc-hHHHHhhccCCCCceEEEEECCCCCCCCCC
Q 007119 152 LIVDHACSAYSFISVPLYDTLG-----PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSL 225 (617)
Q Consensus 152 ~~~~lA~~~~G~v~vpl~~~~~-----~~~l~~il~~~~~~~vi~~~~~-~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~ 225 (617)
+++++||+++|+++||+++.++ .+++.+++++++++++|++... .......... ...+ ++..+....
T Consensus 108 ~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~-~i~~~~~~~----- 180 (614)
T PRK08180 108 ALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVE-VVAVRGAVP----- 180 (614)
T ss_pred HHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCce-EEEecCCCC-----
Confidence 9999999999999999999998 7999999999999999997542 2221111111 1222 333322110
Q ss_pred CccCCceEeeHHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccC--CCcEEE
Q 007119 226 PITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYI 301 (617)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l 301 (617)
.....+|+++........ .......++|+++|+|||||||.||||++||+++++.+......+.+. .+++++
T Consensus 181 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l 256 (614)
T PRK08180 181 ----GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLV 256 (614)
T ss_pred ----CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEE
Confidence 001245666654321111 111234679999999999999999999999999998887766555543 568999
Q ss_pred EeCChHHHHHHHH-HHHHHHhCcEEEEec--CC---hhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHH
Q 007119 302 SYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GD---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (617)
Q Consensus 302 ~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~---~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~ 375 (617)
+++|++|.+++.. .+.+++.|+++++.+ ++ +..+++.++++++|+++++|++|..|++.+...
T Consensus 257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~----------- 325 (614)
T PRK08180 257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD----------- 325 (614)
T ss_pred EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc-----------
Confidence 9999999999865 456899999999875 23 346788999999999999999999987743210
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHh----hC--Cceeccccccccc
Q 007119 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG--GRVTEGYGMTETS 449 (617)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~----~~--~~v~~~YG~TE~~ 449 (617)
...+..++++||.+++||+++++++.+++++. +| ++++++||+||++
T Consensus 326 ---------------------------~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~ 378 (614)
T PRK08180 326 ---------------------------AALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETA 378 (614)
T ss_pred ---------------------------hhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccC
Confidence 00111223689999999999999999999875 33 6799999999998
Q ss_pred cccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecce
Q 007119 450 CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529 (617)
Q Consensus 450 ~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDl 529 (617)
++++.........+++|+|++|++++|+|. +. .|||+|+|++++.|||++|+.|++.|+.||||+|||+
T Consensus 379 ~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~---~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDl 447 (614)
T PRK08180 379 PSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GG---KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDA 447 (614)
T ss_pred CceEecccccCCCCcccCccCCcEEEEecC--------CC---CcEEEEecCccchhhcCChhHhHhhcccCCceeccce
Confidence 766655444566789999999999999983 22 7999999999999999999999999988999999999
Q ss_pred EEE----ecCCcEEEEecCCCeeecCCeeeec--hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007119 530 GMW----IPGGRLKIIDRKKNIFKLAQGEYIA--AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (617)
Q Consensus 530 g~~----~~dG~l~i~gR~~d~ikl~~G~~i~--p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~ 600 (617)
|++ |+||+|+|+||+||+||+++|++|+ |.|+|.++.+||.|.+|+|+|.+ .+.++|+|+++++....|+
T Consensus 448 g~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~-~~~~~a~V~~~~~~~~~~~ 523 (614)
T PRK08180 448 VRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD-RDEIGLLVFPNLDACRRLA 523 (614)
T ss_pred EEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC-CCceEEEEEcCHHHHHHHH
Confidence 999 5789999999999999988999776 78899999999999999999998 4578899999877544443
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-68 Score=591.58 Aligned_cols=493 Identities=16% Similarity=0.168 Sum_probs=381.4
Q ss_pred CCCCCCCHHHHHHHHHHh--cCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH
Q 007119 74 DHPEIGTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW 151 (617)
Q Consensus 74 ~~~~~~tl~~~l~~~a~~--~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 151 (617)
+....++.+++|.++++. +||++|+++. ....+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++||
T Consensus 54 ~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~ 130 (647)
T PTZ00237 54 KGGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEP 130 (647)
T ss_pred CCCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 355678889999888765 7999999874 22222346799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc---------chHHHHhhccCCC-CceEEEEECCCC--
Q 007119 152 LIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ---------TLNSLLSCLSEVP-TVRLIVVIGGID-- 219 (617)
Q Consensus 152 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~---------~~~~l~~~~~~~~-~~~~iv~~~~~~-- 219 (617)
++++|||+++|++++|+++.++++++.++|++++++++|++.. ..+.+.++..... ....++.+....
T Consensus 131 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 210 (647)
T PTZ00237 131 LIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDIT 210 (647)
T ss_pred HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcc
Confidence 9999999999999999999999999999999999999999752 2233333322111 133455432111
Q ss_pred -CCCCC-CCc-cCCceEeeHHHHHhcCcc----CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHH-HHHHHHhhhcC
Q 007119 220 -DQIPS-LPI-TTGVQILTYSNLLSQGRS----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-LIASVAGATLG 291 (617)
Q Consensus 220 -~~~~~-~~~-~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~~ 291 (617)
..... ... ........|++++..... ...+.....++|+++|+|||||||.||||+++|++ ++.........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~ 290 (647)
T PTZ00237 211 SESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSI 290 (647)
T ss_pred cccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHh
Confidence 00000 000 000123457776643211 11122345789999999999999999999999998 44433333444
Q ss_pred cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCC-------hhhHHHHHHhhCCeEEeechHHHHHHHHHHHHH
Q 007119 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD-------NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (617)
Q Consensus 292 ~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~-------~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~ 364 (617)
.....+|+++++.|+.|+.+....+.+++.|+++++++++ +..+++.++++++|++.++|++++.|.+.....
T Consensus 291 ~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 370 (647)
T PTZ00237 291 IEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA 370 (647)
T ss_pred cCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence 5677889999999999987666677899999999998753 578999999999999999999999886521000
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceecccc
Q 007119 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYG 444 (617)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG 444 (617)
. . . ......++||.+++||+++++++.+++++.+|+++++.||
T Consensus 371 ~--------------------------~---~--------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG 413 (647)
T PTZ00237 371 T--------------------------I---I--------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYG 413 (647)
T ss_pred c--------------------------c---c--------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeec
Confidence 0 0 0 0000115899999999999999999999999999999999
Q ss_pred ccccccccccCCCC-CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc---cccccccCChhhhhcccCC
Q 007119 445 MTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE 520 (617)
Q Consensus 445 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~~~ 520 (617)
+||+++.++...+. ....+++|+|+|+++++|+| +++..++.++ .|||+++|| +++.|||++++.+++.|+.
T Consensus 414 ~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge---~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~ 489 (647)
T PTZ00237 414 QTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNE---IGEVAFKLPMPPSFATTFYKNDEKFKQLFSK 489 (647)
T ss_pred hHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCC---ceEEEEeccCCchhhCceeCCHHHHHHHHhC
Confidence 99998655433322 23458999999999999999 5677776665 899999986 7899999999999988854
Q ss_pred -CCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---
Q 007119 521 -DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ--- 593 (617)
Q Consensus 521 -~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--- 593 (617)
+|||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+++|+|.+++ +.++|+|++++
T Consensus 490 ~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~ 568 (647)
T PTZ00237 490 FPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS 568 (647)
T ss_pred CCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcc
Confidence 799999999999999999999999999996 7999999999999999999999999998864 68999999762
Q ss_pred ----------HHHHHHHHHcCCCCChhh
Q 007119 594 ----------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 594 ----------~~~~~~~~~~~~~~~~~~ 611 (617)
+++.++++++..+++.|.
T Consensus 569 ~~~~~~~~l~~~i~~~~~~~l~~~~~P~ 596 (647)
T PTZ00237 569 NQSIDLNKLKNEINNIITQDIESLAVLR 596 (647)
T ss_pred ccCCCHHHHHHHHHHHHHhhcCccccCc
Confidence 244677777655555554
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=554.99 Aligned_cols=459 Identities=22% Similarity=0.298 Sum_probs=372.0
Q ss_pred HHHHHHHHh-cCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 007119 83 DNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSA 160 (617)
Q Consensus 83 ~~l~~~a~~-~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (617)
..+.++.+. .+|+.|+++. +...+. +.+||+||.++++++|+.|++ .|+ +||||+|++||.+|.++++|||++
T Consensus 13 n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~r 87 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATAR 87 (528)
T ss_pred hhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 346666553 4789999986 433333 789999999999999999987 568 999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc--CCCC-ceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 161 YSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 161 ~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~--~~~~-~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
+|++.+|+.+.++++++.+.+++++++++|+.+........... .... +..+++++.. + +.|.
T Consensus 88 iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~~ 153 (528)
T COG0365 88 IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWYD 153 (528)
T ss_pred cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccHH
Confidence 99999999999999999999999999999998766543221111 0000 0013332221 1 5677
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh-cCcccCCCcEEEEeCChHHHHHHHH-H
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN-Q 315 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lPl~h~~~~~~-~ 315 (617)
++.+..... .+..+.+++|+++|+|||||||+||||+++|++++....... ..+.+.++|++++..++.|+++... .
T Consensus 154 ~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v 232 (528)
T COG0365 154 EAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSV 232 (528)
T ss_pred HHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHH
Confidence 776543322 233447899999999999999999999999998776665444 3577779999999999999999988 6
Q ss_pred HHHHHhCcEEEEecC----ChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 316 VMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 316 ~~~l~~G~~~~~~~~----~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
+.+|..|++++++.+ ++..+++.|+++++|+|++.|+.++.|.+.-.
T Consensus 233 ~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~----------------------------- 283 (528)
T COG0365 233 FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL----------------------------- 283 (528)
T ss_pred HHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----------------------------
Confidence 779999999999873 28899999999999999999999999876210
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (617)
.++...++||.+.+.|+||++++.+++.+.+|++|.+.||+||++.+.....+ +.+.++.|.|+||
T Consensus 284 -------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG 349 (528)
T COG0365 284 -------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPG 349 (528)
T ss_pred -------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCC
Confidence 11122269999999999999999999999999999999999999965555444 5566666999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeCc--cccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~--~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
+++.++|. +++.++.+ . |+|+++.+ ++++|||+||+.+.+++- ++||+|||.+++|+||+++|+||.||+||
T Consensus 350 ~~~~vvdd-~g~~~~~~---~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~-~~~y~tGD~~~~DedGy~~i~GR~DDvI~ 423 (528)
T COG0365 350 YAVRRVDD-EGNPVPPG---V-GELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIK 423 (528)
T ss_pred ceeEEECC-CCCcCCCC---c-eEEEEeCCCchhhhhhhCCHHHHHHHHh-hceeecCceeEEccCCCEEEEeeccceEe
Confidence 99999994 46655555 3 99999987 899999999999999983 33999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHHcCCCCChhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~~~~~~~~~~~~~~~~~ 611 (617)
+ .|++|.|.|||+.|.+||.|.||+|+|.++. +.++|||++. ..++.+|.++.-.+...|+
T Consensus 424 v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~ 495 (528)
T COG0365 424 V-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPR 495 (528)
T ss_pred c-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCc
Confidence 6 7999999999999999999999999999864 5689999986 3566677755433344443
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=586.23 Aligned_cols=483 Identities=21% Similarity=0.311 Sum_probs=378.3
Q ss_pred ccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCC
Q 007119 57 NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136 (617)
Q Consensus 57 ~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~ 136 (617)
.++|+..++......+++.+...|+.++|+++++++||++|+.+. +...+.++.+||+||.++++++|++|.+.|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~ 103 (624)
T PRK12582 27 SVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLD 103 (624)
T ss_pred EEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCC
Confidence 456665444333334666677889999999999999999999865 32234567899999999999999999999999
Q ss_pred CCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCH-----HHHHHHHHhccccEEEecccc-hHHHHhhccCCCCce
Q 007119 137 KGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP-----DAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVR 210 (617)
Q Consensus 137 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~-----~~l~~il~~~~~~~vi~~~~~-~~~l~~~~~~~~~~~ 210 (617)
+||+|+++++|+++|+++++||+++|++++|+++.++. +++.+++++++++++|++... .......... ..++
T Consensus 104 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~ 182 (624)
T PRK12582 104 PGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVT 182 (624)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCce
Confidence 99999999999999999999999999999999999875 899999999999999998642 2222222211 1233
Q ss_pred EEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhh
Q 007119 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288 (617)
Q Consensus 211 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~ 288 (617)
++.++.... ......+.++........ .......++|+++|+|||||||.||||++||+++++.....
T Consensus 183 -~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~ 252 (624)
T PRK12582 183 -VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQ 252 (624)
T ss_pred -EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHH
Confidence 333332110 112345666654322110 01123467899999999999999999999999998877665
Q ss_pred hcCcccCC---CcEEEEeCChHHHHHHHHH-HHHHHhCcEEEEec--CC---hhhHHHHHHhhCCeEEeechHHHHHHHH
Q 007119 289 TLGTKFYP---SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GD---NMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (617)
Q Consensus 289 ~~~~~~~~---~d~~l~~lPl~h~~~~~~~-~~~l~~G~~~~~~~--~~---~~~l~~~i~~~~~t~~~~vP~~~~~l~~ 359 (617)
........ .+++++++|++|++++... +.+++.|+++++.+ ++ ...+++.++++++|+++++|+++..|.+
T Consensus 253 ~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~ 332 (624)
T PRK12582 253 EQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAE 332 (624)
T ss_pred HHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHH
Confidence 44434333 5899999999999998764 46789999998865 22 3456778899999999999999998876
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh----
Q 007119 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---- 435 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~---- 435 (617)
.+... + ..+....++||.+++||+++++++.+++++.+
T Consensus 333 ~~~~~----~----------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~ 374 (624)
T PRK12582 333 AMEKD----D----------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTT 374 (624)
T ss_pred HHhhC----H----------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhc
Confidence 42110 0 00111225899999999999999999998863
Q ss_pred --CCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhh
Q 007119 436 --GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (617)
Q Consensus 436 --~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~ 513 (617)
+++++++||+||++.+++.........+++|+|+||+++++++ .|+ .|||+|+|++++.|||++|+.
T Consensus 375 g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G~---~GEl~vrg~~v~~GY~~~p~~ 443 (624)
T PRK12582 375 GHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VGD---KYEVRVKGPNVTPGYHKDPEL 443 (624)
T ss_pred CCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CCC---ceEEEEECCcccccccCCccc
Confidence 3689999999999876654333445678999999999999974 233 899999999999999999999
Q ss_pred hhcccCCCCeeeecceEEE-e---cCCcEEEEecCCCeeecCCeeeechHHHH--HHHhcCCCcceEEEEeeCCCCeEEE
Q 007119 514 TKEVIDEDGWFHTGDIGMW-I---PGGRLKIIDRKKNIFKLAQGEYIAAEKIE--NVYAKCKFVGQCFVYGDSFNSALVA 587 (617)
Q Consensus 514 t~~~~~~~gw~~TGDlg~~-~---~dG~l~i~gR~~d~ikl~~G~~i~p~~IE--~~l~~~p~V~~~~V~g~~~~~~~va 587 (617)
|++.|+.||||+|||+|++ | ++|+|+|+||+||+||+++|++|+|.+|| .++.+||.|.+|+|+|.+ +..+.+
T Consensus 444 t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g~ 522 (624)
T PRK12582 444 TAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIGL 522 (624)
T ss_pred hhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEEE
Confidence 9999988999999999998 4 56999999999999998899999998885 688999999999999986 778899
Q ss_pred EEEeCHHHHHHHHHHc
Q 007119 588 IVSVDQDALKAWAASE 603 (617)
Q Consensus 588 ~vv~~~~~~~~~~~~~ 603 (617)
+|+|+++.+..++...
T Consensus 523 lv~p~~~~~~~~~~~~ 538 (624)
T PRK12582 523 LAWPNPAACRQLAGDP 538 (624)
T ss_pred EEecCHHHHHHHHhcC
Confidence 9999988876666543
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=580.07 Aligned_cols=473 Identities=22% Similarity=0.263 Sum_probs=380.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|++.++++|+++|+... + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l 75 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL 75 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4568999999999999999999643 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhc-cCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
||+++|++++||++.++.+++.++++++++++++++........... ..++.++.++.++....... .....+..
T Consensus 76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 151 (563)
T PLN02860 76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT 151 (563)
T ss_pred HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence 99999999999999999999999999999999999876533222221 23445555555443211000 00001122
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
++++...+...........++++++|+|||||||.||||++||++++.........+.+.++|++++.+|++|++++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 231 (563)
T PLN02860 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231 (563)
T ss_pred cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence 22222111111111123467899999999999999999999999998877766666788999999999999999998878
Q ss_pred HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
+.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+......
T Consensus 232 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------- 282 (563)
T PLN02860 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM----------------------------- 282 (563)
T ss_pred HHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-----------------------------
Confidence 88999999998877 799999999999999999999999998876321000
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC--------------
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-------------- 459 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-------------- 459 (617)
.....+++|.+++||+++++++.+.+++.| ++++++.||+||+++.++.....+
T Consensus 283 -----------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (563)
T PLN02860 283 -----------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN 351 (563)
T ss_pred -----------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhc
Confidence 001115899999999999999999999988 789999999999976544322111
Q ss_pred ---------CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceE
Q 007119 460 ---------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (617)
Q Consensus 460 ---------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg 530 (617)
....++|+|+++++++|++.+ .+ +.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|
T Consensus 352 ~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g---~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~ 422 (563)
T PLN02860 352 QTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SS---RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG 422 (563)
T ss_pred ccccccccccCCcccCCccCCcEEEEecCC------CC---ceeEEEEecCcccccccCCccccchhccCCCeEEccceE
Confidence 112378999999999999843 23 389999999999999999999999999889999999999
Q ss_pred EEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH--------------
Q 007119 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------------- 593 (617)
Q Consensus 531 ~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------------- 593 (617)
++|+||+++|+||+||+||+ +|++|+|.+||+++.+||+|.+++|+|.++. +.++|+|++++
T Consensus 423 ~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~ 501 (563)
T PLN02860 423 WIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKK 501 (563)
T ss_pred EEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcc
Confidence 99999999999999999996 9999999999999999999999999998754 57899998643
Q ss_pred ------HHHHHHHHHcCC-CCChhhh
Q 007119 594 ------DALKAWAASEGI-QSLAPSD 612 (617)
Q Consensus 594 ------~~~~~~~~~~~~-~~~~~~~ 612 (617)
+.+.+|++++++ ++++|..
T Consensus 502 ~~~~~~~~l~~~~~~~~L~~~~~P~~ 527 (563)
T PLN02860 502 NLTLSSETLRHHCREKNLSRFKIPKL 527 (563)
T ss_pred cccccHHHHHHHHhhCcccccccceE
Confidence 568889987544 4777754
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=581.93 Aligned_cols=487 Identities=16% Similarity=0.199 Sum_probs=379.0
Q ss_pred CCCCCHHHHHHHHHH-hcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 76 PEIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~-~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
...+..+++|.++++ .+|+++|+++. ....+..+.+||+||.+++.++|++|++.|+++||+|+|+++|++||+++
T Consensus 85 ~~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a 161 (666)
T PLN02654 85 GKTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIA 161 (666)
T ss_pred CEeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 345566788888776 48999999874 32234457799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchH---------HHHhhccCC----CCceEEEEECCCCCC
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEV----PTVRLIVVIGGIDDQ 221 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~l~~~~~~~----~~~~~iv~~~~~~~~ 221 (617)
++||+++|++++|+++.++++++.+++++++++++|++..... .+....... .....++..+.....
T Consensus 162 ~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (666)
T PLN02654 162 MLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAM 241 (666)
T ss_pred HHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccc
Confidence 9999999999999999999999999999999999999865321 121111111 111222332221100
Q ss_pred CCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHH-HHhhhcCcccCCCcEE
Q 007119 222 IPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVY 300 (617)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~ 300 (617)
..............|+++..... ...+.....++|+++|+|||||||.||||+++|++++.. .......+++.++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~ 320 (666)
T PLN02654 242 KREDTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVY 320 (666)
T ss_pred cccccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEE
Confidence 00000000011234666543211 111223357899999999999999999999999998644 3444556788999999
Q ss_pred EEeCChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHH
Q 007119 301 ISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (617)
Q Consensus 301 l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~ 374 (617)
++++|+.|+++... .+.+|+.|+++++++ .++..+++.|+++++|++.++|++++.|.+.....
T Consensus 321 ~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 390 (666)
T PLN02654 321 WCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY---------- 390 (666)
T ss_pred EEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc----------
Confidence 99999999998766 567899999999986 37889999999999999999999999886521000
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---Cceeccccccccccc
Q 007119 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCL 451 (617)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~ 451 (617)
......++||.+++||+++++++.+++.+.+| +++.+.||+||+++.
T Consensus 391 ------------------------------~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~ 440 (666)
T PLN02654 391 ------------------------------VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGF 440 (666)
T ss_pred ------------------------------cccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCe
Confidence 00001148999999999999999999999987 789999999999876
Q ss_pred cccCCCC--CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhcccC--CCCeee
Q 007119 452 ISQLDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFH 525 (617)
Q Consensus 452 ~~~~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~ 525 (617)
.+...+. ...++++|+|++|++++|+| ++++.++.+. .|||+|++ |+++.|||+|++.+.+.+. .+|||+
T Consensus 441 ~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~---~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~ 516 (666)
T PLN02654 441 MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGEC---SGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYF 516 (666)
T ss_pred eeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCC---ceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEE
Confidence 6544332 24678999999999999999 5556665554 79999999 7899999999999987752 279999
Q ss_pred ecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------
Q 007119 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ--------- 593 (617)
Q Consensus 526 TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--------- 593 (617)
|||+|++|+||+++|+||+||+||+ +|++|+|.|||+++.+||+|.+++|+|.+++ +.++|+|++.+
T Consensus 517 TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~ 595 (666)
T PLN02654 517 SGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELR 595 (666)
T ss_pred eCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHH
Confidence 9999999999999999999999996 8999999999999999999999999998764 57899999743
Q ss_pred HHHHHHHHHcCCCCChhh
Q 007119 594 DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~ 611 (617)
+.+.++++++...++.|+
T Consensus 596 ~~l~~~~~~~L~~~~~P~ 613 (666)
T PLN02654 596 KSLILTVRNQIGAFAAPD 613 (666)
T ss_pred HHHHHHHHHhCCCCcCCC
Confidence 256778887755565554
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=580.69 Aligned_cols=485 Identities=19% Similarity=0.255 Sum_probs=391.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
....+..+++|.++++++||++|+++. +...++.+.+||+||.+++.++|++|++.|+++||+|+|+++|++|++++
T Consensus 53 ~~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 129 (625)
T TIGR02188 53 GGELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIA 129 (625)
T ss_pred CCEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 345677888898888899999999875 33234567899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhccCCC-CceEEEEECCCCCCCCC
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVP-TVRLIVVIGGIDDQIPS 224 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~-~~~~iv~~~~~~~~~~~ 224 (617)
++||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.+....++ .++.++.++.......
T Consensus 130 ~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (625)
T TIGR02188 130 MLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP- 208 (625)
T ss_pred HHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-
Confidence 99999999999999999999999999999999999998653 233334444445 5666776654321110
Q ss_pred CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEe
Q 007119 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (617)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (617)
.. ......|+++...... ........++|+++|+|||||||.||||+++|++++..... ....+.+.++|+++++
T Consensus 209 ~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~ 284 (625)
T TIGR02188 209 WV---EGRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCT 284 (625)
T ss_pred cc---ccccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEEC
Confidence 00 0112456666554322 12233467899999999999999999999999998755433 3345678899999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHH
Q 007119 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (617)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (617)
+|++|+.+... .+.+|..|+++++++ .++..+++.++++++|++.++|++++.|.+.....
T Consensus 285 ~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 351 (625)
T TIGR02188 285 ADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW------------- 351 (625)
T ss_pred CCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc-------------
Confidence 99999988655 567899999999986 37899999999999999999999998886521000
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---Cceecccccccccccccc
Q 007119 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (617)
.+....++||.+++||+++++++.+++.+.++ +++++.||+||+++.++.
T Consensus 352 ---------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~ 404 (625)
T TIGR02188 352 ---------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMIT 404 (625)
T ss_pred ---------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceee
Confidence 00011258999999999999999999999885 789999999999876554
Q ss_pred CCCC--CCCCCCcCCCCcCeEEEEeecCCCCCCC-CCCCCCcceEEEeC--ccccccccCChhhhhcccC--CCCeeeec
Q 007119 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS-EDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTG 527 (617)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~-~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~TG 527 (617)
..+. ....+++|+|++|++++|+| ++++.++ .++ .|||+|+| |++++|||++++.+.+.+. .+|||+||
T Consensus 405 ~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~---~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 480 (625)
T TIGR02188 405 PLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGE---GGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTG 480 (625)
T ss_pred cCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCC---eEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECC
Confidence 4332 34678999999999999999 6666666 565 89999999 6899999999998887763 47999999
Q ss_pred ceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HH
Q 007119 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DA 595 (617)
Q Consensus 528 Dlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~ 595 (617)
|+|++|+||+++|+||+||+||+ +|++|+|.+||+++.+||.|.+++|+|.+++ +.++|+|++++ ++
T Consensus 481 Dl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~ 559 (625)
T TIGR02188 481 DGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKE 559 (625)
T ss_pred ceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHH
Confidence 99999999999999999999997 8999999999999999999999999998754 57889998753 46
Q ss_pred HHHHHHHcCCCCChhhh
Q 007119 596 LKAWAASEGIQSLAPSD 612 (617)
Q Consensus 596 ~~~~~~~~~~~~~~~~~ 612 (617)
++++++++...++.|+.
T Consensus 560 l~~~~~~~l~~~~~P~~ 576 (625)
T TIGR02188 560 LRKHVRKEIGPIAKPDK 576 (625)
T ss_pred HHHHHHhhcCCCccCcE
Confidence 88888887655655543
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=573.70 Aligned_cols=485 Identities=23% Similarity=0.308 Sum_probs=390.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|++++|.+.++++||++|+.+... ++.....+++||+||.+++.++|++|+++|+++||+|+++++|+++|+++++
T Consensus 23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 346899999999999999999987411 1112234679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc-----hHHHHhhccCCCCceEEEEECCCCCC--CCCCC---
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQ--IPSLP--- 226 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~iv~~~~~~~~--~~~~~--- 226 (617)
||+++| +++|+++.++++++.+++++++++++|++... .+.+.......+.++.++.++..... .....
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence 999999 56899999999999999999999999997543 34455555566777777776543210 00000
Q ss_pred --ccCCceEeeHHHHHhcCccCC-CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEe
Q 007119 227 --ITTGVQILTYSNLLSQGRSNL-QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303 (617)
Q Consensus 227 --~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 303 (617)
...+..+..|.+.+....... .......++++++|+|||||||.||||++||+++++........+.+.++|++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 002233456776665433221 12233467999999999999999999999999999888776666778899999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC----C---hhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHH
Q 007119 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG----D---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (617)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~~~~~~~----~---~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~ 375 (617)
+|++|.++... .+.+++.|+++++.+. + ...+++.++++++|++.++|+++..+.+...
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------- 327 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV------------- 327 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------
Confidence 99999999876 5678999999998751 2 3578899999999999999999998865210
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccC
Q 007119 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (617)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 455 (617)
.....++||.+++||+++++++.+.+++.++++++++||+||++++++..
T Consensus 328 ------------------------------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~ 377 (632)
T PRK07529 328 ------------------------------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVN 377 (632)
T ss_pred ------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccC
Confidence 00011589999999999999999999999999999999999998766655
Q ss_pred CCC-CCCCCCcCCCCcCeEEEEeecCC-C---CCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceE
Q 007119 456 DEG-DNLSGHVGSPNAACEIKLVDVPE-M---NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (617)
Q Consensus 456 ~~~-~~~~~~vG~p~~~~~v~ivd~~~-~---~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg 530 (617)
... ....+++|.|+|+++++|+..++ + ..++.|+ .|||+|+|++++.||++++ .+.+.|..+|||+|||+|
T Consensus 378 ~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~---~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg 453 (632)
T PRK07529 378 PPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE---VGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLG 453 (632)
T ss_pred CccccccCCCcccccCCceEEEEEcCCCCcccccCCCCC---ceEEEEECCCccccccCCc-cccccccCCCceEcCcEE
Confidence 433 24678999999999999975433 3 3455554 8999999999999999865 456666678999999999
Q ss_pred EEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHH
Q 007119 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAA 601 (617)
Q Consensus 531 ~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~ 601 (617)
++|+||+++|.||+||+||. +|++|+|.+||+.|.+||+|.+|+|+|.++. +.++|+|++ +++++.+|++
T Consensus 454 ~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~ 532 (632)
T PRK07529 454 RIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFAR 532 (632)
T ss_pred EEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHH
Confidence 99999999999999999996 9999999999999999999999999998754 578999985 3578999998
Q ss_pred HcCCC-CChhh
Q 007119 602 SEGIQ-SLAPS 611 (617)
Q Consensus 602 ~~~~~-~~~~~ 611 (617)
++... +.+|.
T Consensus 533 ~~l~~~~~~P~ 543 (632)
T PRK07529 533 DHIAERAAVPK 543 (632)
T ss_pred HhcchhccCCc
Confidence 87543 45554
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=566.95 Aligned_cols=467 Identities=20% Similarity=0.236 Sum_probs=374.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.+.|.+.++++|++.|+... +. +.+||+||.++++++|++|.+. +||+|+|+++|+++|+++++
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999988643 21 2489999999999999999873 89999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCC-CceEEEEECCCCCCCCCCCccCCceEee
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
||+++|+++|||++.++.+++.++|+++++++++++.+....+.+...... ....++.+++.... ..
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence 999999999999999999999999999999999998776655544322110 11133443321100 01
Q ss_pred HHHHHhcCc----c-----CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCCh
Q 007119 236 YSNLLSQGR----S-----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (617)
Q Consensus 236 ~~~l~~~~~----~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl 306 (617)
+.+....+. . .........++|+++|+|||||||.||||++||+++..........+.+..+|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 111110000 0 0001224567999999999999999999999999999887777667788899999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 007119 307 AHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (617)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (617)
+|.+++.. .+.++..|+++++.. .++..+++.|+++++|++.++|++++.+.+.....
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------- 294 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ------------------- 294 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-------------------
Confidence 99999875 567899999998875 68999999999999999999999999887632110
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC-CC
Q 007119 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-NL 461 (617)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~ 461 (617)
....++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++...... ..
T Consensus 295 -----------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 351 (539)
T PRK06334 295 -----------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKH 351 (539)
T ss_pred -----------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCC
Confidence 00114899999999999999999999988 689999999999987666543332 34
Q ss_pred CCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc-CCCCeeeecceEEEecCCcEEE
Q 007119 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI-DEDGWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 462 ~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~-~~~gw~~TGDlg~~~~dG~l~i 540 (617)
.+++|+|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.+.... +.+|||+|||+|++|++|+|+|
T Consensus 352 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~ 428 (539)
T PRK06334 352 ESCVGMPIRGMDVLIVSEETKVPVSSGE---TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428 (539)
T ss_pred CCcCceecCCCEEEEEcCCCCccCCCCc---eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEE
Confidence 5689999999999999966667777776 89999999999999999998765432 3578999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcce------EEEEeeCCCC-eEEEEEEe--CHHHHHHHHHHcCC-CCChh
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ------CFVYGDSFNS-ALVAIVSV--DQDALKAWAASEGI-QSLAP 610 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~------~~V~g~~~~~-~~va~vv~--~~~~~~~~~~~~~~-~~~~~ 610 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+ ++|+|.+++. .+++++++ +.+++++|++++.+ .++.|
T Consensus 429 ~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~P 507 (539)
T PRK06334 429 KGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKTSSILKI 507 (539)
T ss_pred EeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhcCCcccccc
Confidence 9999999996 8999999999999999999998 8899988654 45555553 56788999988644 35555
Q ss_pred hh
Q 007119 611 SD 612 (617)
Q Consensus 611 ~~ 612 (617)
..
T Consensus 508 ~~ 509 (539)
T PRK06334 508 SY 509 (539)
T ss_pred hh
Confidence 53
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=574.64 Aligned_cols=485 Identities=15% Similarity=0.176 Sum_probs=384.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...+..+++|.++++.+|+++|+.+. +...+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++|+++++
T Consensus 49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~ 125 (628)
T TIGR02316 49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM 125 (628)
T ss_pred CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 44566788898888899999999875 333344577999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhccCC-CCceEEEEECCCCCCCCCC
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSL 225 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~~~~iv~~~~~~~~~~~~ 225 (617)
+||+++|++++|+++.++.+++.+++++++++++|++... .+.+.++.... +....++.++.......
T Consensus 126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-- 203 (628)
T TIGR02316 126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR-- 203 (628)
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC--
Confidence 9999999999999999999999999999999999997642 12222222221 23455666654211100
Q ss_pred CccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHH-HHhhhcCcccCCCcEEEEeC
Q 007119 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYL 304 (617)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~l 304 (617)
........|.++.........+.....++++++|+|||||||.||||+++|++++.. .......+++.++|++++++
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 281 (628)
T TIGR02316 204 --LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSAS 281 (628)
T ss_pred --cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 000112456666544322112223356799999999999999999999999998644 33444557888999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 007119 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (617)
Q Consensus 305 Pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (617)
|+.|+++... .+.+|+.|+++++++ .++..+++.++++++|+++++|++++.|.+....
T Consensus 282 ~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------- 346 (628)
T TIGR02316 282 DVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA--------------- 346 (628)
T ss_pred CCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc---------------
Confidence 9999998754 567899999999986 3688999999999999999999999877542000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC
Q 007119 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458 (617)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 458 (617)
..+....++||.+++||+++++++.++++..++.++++.||+||++..++...+.
T Consensus 347 -------------------------~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~ 401 (628)
T TIGR02316 347 -------------------------WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPG 401 (628)
T ss_pred -------------------------ccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCC
Confidence 0001112589999999999999999999999999999999999998544332221
Q ss_pred ----CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc---cccccccCChhhhhccc---CCCCeeeecc
Q 007119 459 ----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGD 528 (617)
Q Consensus 459 ----~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~---~~~gw~~TGD 528 (617)
....+++|.|+++++++|+|.++++.++.++ .|||+|+|| +++.|||++++.+.+.+ ..++||+|||
T Consensus 402 ~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~---~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 478 (628)
T TIGR02316 402 LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE---KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD 478 (628)
T ss_pred CCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC---cEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCc
Confidence 2356889999999999999965777777776 899999998 57899999999887754 2578999999
Q ss_pred eEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------------
Q 007119 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------------ 593 (617)
Q Consensus 529 lg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------------ 593 (617)
+|++|+||+|+|+||+||+||+ +|++|+|.|||+++.+||+|.+|+|+|.++. +.++++|++.+
T Consensus 479 ~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~ 557 (628)
T TIGR02316 479 WGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHA 557 (628)
T ss_pred eEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHH
Confidence 9999999999999999999996 8999999999999999999999999998754 57889988642
Q ss_pred --HHHHHHHHHcCCCCChhh
Q 007119 594 --DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 594 --~~~~~~~~~~~~~~~~~~ 611 (617)
++++++++++..+++.|.
T Consensus 558 ~~~~i~~~~~~~L~~~~~P~ 577 (628)
T TIGR02316 558 VETGMMDCVVRQLGAVARPA 577 (628)
T ss_pred HHHHHHHHHHHhcCCCcCCC
Confidence 468888888766666664
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-66 Score=567.03 Aligned_cols=466 Identities=21% Similarity=0.259 Sum_probs=388.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.++|.+.++++||++|+... + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999753 3 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|+++||+++.++.+++.+++++++++++|++.+....+.+.....+.++.++....... .....+.++++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 192 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDD 192 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc-------cCCcCcccHHH
Confidence 99999999999999999999999999999999998877766555444454544443222110 01123456777
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
+...... ...+..+++.++++|||||||.||||++||++++..+......+.+..+|++++.+|++|.+++...+.+
T Consensus 193 ~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 269 (549)
T PRK07788 193 LIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA 269 (549)
T ss_pred HhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHH
Confidence 7654322 1222346788999999999999999999999999988877777888899999999999999999877788
Q ss_pred HHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
+..|+++++.. +++..+++.++++++|++.++|+++..+.+......
T Consensus 270 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 317 (549)
T PRK07788 270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------------- 317 (549)
T ss_pred HHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------------
Confidence 99999998876 799999999999999999999999998876311000
Q ss_pred hHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEEE
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i 476 (617)
.....++||.+++||+++++++.+++++.+++++++.||+||++..+...... ....+++|.|+++++++|
T Consensus 318 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 389 (549)
T PRK07788 318 --------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI 389 (549)
T ss_pred --------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence 00011489999999999999999999999999999999999998655433221 245678999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeee
Q 007119 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (617)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i 556 (617)
+| +++..++.|+ .|||+|+|+.++.||+++++. + + .+|||+|||+|++|+||+++|+||+||+||+ +|++|
T Consensus 390 ~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v 460 (549)
T PRK07788 390 LD-ENGNEVPRGV---VGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENV 460 (549)
T ss_pred EC-CCcCCCCCCC---eEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEE-CCEEE
Confidence 99 5666666665 899999999999999998875 2 2 5899999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
+|.+||+++.+||.|.+++|+|.+++ +.++|+|+++ .++++++++++...+++|..
T Consensus 461 ~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 525 (549)
T PRK07788 461 FPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRD 525 (549)
T ss_pred CHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcE
Confidence 99999999999999999999998754 4789999863 47899999987666666653
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=571.48 Aligned_cols=482 Identities=18% Similarity=0.270 Sum_probs=386.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..+..+++|.++++++||++|+.+. +...+..+.+||+||.+++.++|++|.+.|+++||+|+|+++|+++++++++
T Consensus 65 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 141 (637)
T PRK00174 65 ELNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAML 141 (637)
T ss_pred EeEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3445677888888999999999875 3222345679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch---------HHHHhhccCCCCceEEEEECCCCCCCCCCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~ 227 (617)
||+++|++++|+++.++.+++.+++++++++++|+++... +.+.+....++.++.++.++...... ..
T Consensus 142 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 218 (637)
T PRK00174 142 ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV-DW-- 218 (637)
T ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCc-Cc--
Confidence 9999999999999999999999999999999999976532 23333333455666777665422110 00
Q ss_pred cCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeCCh
Q 007119 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPL 306 (617)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lPl 306 (617)
.......|+++...... ..+.....++|+++|+|||||||.||||+++|++++..... ....+.+.++|++++.+|+
T Consensus 219 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 296 (637)
T PRK00174 219 -VEGRDLWWHELVAGASD-ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADV 296 (637)
T ss_pred -CCCCcccHHHHHhhcCC-CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence 01122456666543221 12233456789999999999999999999999998755433 3344678889999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 007119 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (617)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (617)
+|..+... .+.+|+.|+++++++ .++..+++.|+++++|++.++|++++.+.+.....
T Consensus 297 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------- 360 (637)
T PRK00174 297 GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH---------------- 360 (637)
T ss_pred hHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc----------------
Confidence 99988765 567899999999976 37899999999999999999999998886521000
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---CceeccccccccccccccCCC
Q 007119 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLDE 457 (617)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~~~ 457 (617)
......++||.+++||+++++++.+++.+.++ +++++.||+||+++.++...+
T Consensus 361 ------------------------~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 416 (637)
T PRK00174 361 ------------------------PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLP 416 (637)
T ss_pred ------------------------cccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCC
Confidence 00011248999999999999999999998886 789999999999876554333
Q ss_pred C--CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhccc--CCCCeeeecceEE
Q 007119 458 G--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDIGM 531 (617)
Q Consensus 458 ~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDlg~ 531 (617)
. ....+++|.|++|++++|+| +++..++.++ .|||+|+| |++++|||++++.+.+.+ ..+|||+|||+|+
T Consensus 417 ~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~ 492 (637)
T PRK00174 417 GATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGE---GGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGAR 492 (637)
T ss_pred CCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCC---cEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEE
Confidence 2 24567899999999999999 5666676665 89999999 689999999999888776 3479999999999
Q ss_pred EecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC---------HHHHHHH
Q 007119 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD---------QDALKAW 599 (617)
Q Consensus 532 ~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~~~~~ 599 (617)
+|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.++. +.++|+|+++ .+++.++
T Consensus 493 ~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~ 571 (637)
T PRK00174 493 RDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNW 571 (637)
T ss_pred EcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 7999999999999999999999999997754 5789999864 2568888
Q ss_pred HHHcCCCCChhh
Q 007119 600 AASEGIQSLAPS 611 (617)
Q Consensus 600 ~~~~~~~~~~~~ 611 (617)
++++...++.|.
T Consensus 572 l~~~l~~~~~P~ 583 (637)
T PRK00174 572 VRKEIGPIAKPD 583 (637)
T ss_pred HHhhcCCccCCC
Confidence 887755555554
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=498.87 Aligned_cols=467 Identities=21% Similarity=0.271 Sum_probs=403.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..|+.+.|.++++++||++|++. ++ +.+||+||+++++++|.+|+++|+++||+|.+.++|..|+++++||
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~d-----~~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA 97 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVID-----GE----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA 97 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEec-----Cc----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence 46999999999999999999984 33 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc-----chHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-----TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~-----~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
.+++|+.+|.--|.....++.+...+.+++.+|++.. ..+...+...+.+.++++++.++.+..
T Consensus 98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------- 166 (542)
T COG1021 98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------- 166 (542)
T ss_pred HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence 9999999999888888999999999999999998753 234455566678889999887654311
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
......+........+.++.++++++++..+.||||.||-+..||.....+++...+.+++++.+++|+.+|.+|.|.+
T Consensus 167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfpl 245 (542)
T COG1021 167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPL 245 (542)
T ss_pred -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCC
Confidence 1122222222233344566788999999999999999999999999999999988888999999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
.+ .+..++.|+++|+.+ .++...+..|+++++|+...||.+...+++.....
T Consensus 246 ssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~------------------------- 300 (542)
T COG1021 246 SSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE------------------------- 300 (542)
T ss_pred CCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc-------------------------
Confidence 87 567899999999987 89999999999999999999999888777643211
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC---CCCCCcC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVG 466 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG 466 (617)
....++||++-+||+.+++++.+++...+||.+.+.|||.|.-...+ .-+| .-..+-|
T Consensus 301 -----------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyT--RLDDp~E~i~~TQG 361 (542)
T COG1021 301 -----------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYT--RLDDPPEIIIHTQG 361 (542)
T ss_pred -----------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhccc--ccCCchHheeecCC
Confidence 11226999999999999999999999999999999999999654332 2233 3456889
Q ss_pred CCC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCC
Q 007119 467 SPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 467 ~p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
+|+ |.-|++|+| .+++.+.+|+ .|+|..|||..++|||+.|+.++++|+.+|||+|||+.++|+||+|.+.||.|
T Consensus 362 rPlsP~DEvrvvD-~dg~pv~pGE---~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~K 437 (542)
T COG1021 362 RPLSPDDEVRVVD-ADGNPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVK 437 (542)
T ss_pred CcCCCcceeEEec-CCCCCCCCCC---cceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeeh
Confidence 998 889999999 7778888887 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCCC-CChhhhhc
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGIQ-SLAPSDCS 614 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~~~~~-~~~~~~~~ 614 (617)
|+|+ ++||+|..+||||.|..||.|.++++++.+|+ +..+|+||+. ..+++.|+++.|+. +++|+-++
T Consensus 438 DQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDrie 514 (542)
T COG1021 438 DQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIE 514 (542)
T ss_pred hhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCccee
Confidence 9999 79999999999999999999999999999875 7889999864 46899999999986 78887654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=553.30 Aligned_cols=467 Identities=21% Similarity=0.315 Sum_probs=385.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|.+.++.+||++|+.+. +...++++.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~ 100 (547)
T PRK13295 24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC 100 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 58999999999999999999875 322344578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc-----hHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceE
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
+++|++++|+++.++.+++.++++.+++++++++... .+.+.++....+.++.++.++... .
T Consensus 101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 167 (547)
T PRK13295 101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A 167 (547)
T ss_pred HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence 9999999999999999999999999999999998753 233333334455666666654321 1
Q ss_pred eeHHHHHhcCc-----c--CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCCh
Q 007119 234 LTYSNLLSQGR-----S--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (617)
Q Consensus 234 ~~~~~l~~~~~-----~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl 306 (617)
.+|.++..... . .........++++++|+|||||||.||||++||++++..+......+.+.++|++++.+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (547)
T PRK13295 168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247 (547)
T ss_pred cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCc
Confidence 23444432110 0 0111223467899999999999999999999999999888877777788999999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
+|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 248 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------------- 307 (547)
T PRK13295 248 AHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES-------------------- 307 (547)
T ss_pred hhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc--------------------
Confidence 99998766 567899999999887 68999999999999999999999998876521100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLS 462 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~ 462 (617)
....+++|.+++||+++++++.+++++.+++++++.||+||++.+++..... ....
T Consensus 308 ----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 365 (547)
T PRK13295 308 ----------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERAS 365 (547)
T ss_pred ----------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhcc
Confidence 0011489999999999999999999999999999999999998765543322 1335
Q ss_pred CCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEe
Q 007119 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
+++|.|+++++++|+| +++..++.|+ .|||+|+|++++.||+++|+.|++. .+|||+|||+|+++++|++++.|
T Consensus 366 ~~~G~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~g 439 (547)
T PRK13295 366 TTDGCPLPGVEVRVVD-ADGAPLPAGQ---IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISG 439 (547)
T ss_pred CccccccCCcEEEEEC-CCCCCCCCCC---CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEe
Confidence 6899999999999999 5566677776 8999999999999999999999876 57899999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCC-CCChh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGI-QSLAP 610 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~-~~~~~ 610 (617)
|.||+||+ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++|+++ .+.+.++++++.+ .++.|
T Consensus 440 R~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P 516 (547)
T PRK13295 440 RSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIP 516 (547)
T ss_pred ccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCC
Confidence 99999996 8999999999999999999999999997644 5788999874 3678888886433 34444
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=557.58 Aligned_cols=474 Identities=18% Similarity=0.272 Sum_probs=390.0
Q ss_pred CCCCHHHHHHHHHH-hcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
..+.+++++.++++ .+||++|+.+. +.. ..+.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45667788988887 47999999875 422 2356999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++|+++.++++++.++++++++++++++......... ..++.++.++.++.... ......+
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~ 185 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE--------EGPGTLD 185 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC--------CCcCccC
Confidence 9999999999999999999999999999999999998776544322 13455666776654221 0112346
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (617)
+.++...... ..+..+..++++++|+|||||||.||||+++|+++++.+......+.+.++|++++..|+.|.++...
T Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 264 (570)
T PRK04319 186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYG 264 (570)
T ss_pred HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHH
Confidence 6766544322 12233456789999999999999999999999999988877777788899999999999999988665
Q ss_pred HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+.+++.|+++++.. +++..+++.|+++++|++.++|.+++.+.+......
T Consensus 265 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 317 (570)
T PRK04319 265 IFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV--------------------------- 317 (570)
T ss_pred HHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc---------------------------
Confidence 567899999999875 789999999999999999999999998865210000
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAA 471 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~ 471 (617)
.....++||.+++||+++++++.+++++.++.++++.||+||+++.++...+. +...+++|+|+|+
T Consensus 318 -------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g 384 (570)
T PRK04319 318 -------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG 384 (570)
T ss_pred -------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCC
Confidence 00011489999999999999999999999999999999999998765543332 3467899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
++++|+| +++..++.|+ .|||+++| ++++.|||++++.|++.| .+|||+|||+|++++||+++++||+||+||
T Consensus 385 ~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~ 459 (570)
T PRK04319 385 IEAAIVD-DQGNELPPNR---MGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIK 459 (570)
T ss_pred CEEEEEC-CCCCCCCCCC---ceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEE
Confidence 9999999 4555555565 89999997 899999999999999999 589999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHcCCCCChhhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~~~~~~~~~~~ 612 (617)
+ +|++|+|.+||+.+.+||.|.+++|+|.+++ +.++|+|++.+ +++.++++++...++.|..
T Consensus 460 ~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 533 (570)
T PRK04319 460 T-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPRE 533 (570)
T ss_pred E-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcE
Confidence 6 8999999999999999999999999998754 57888888643 4678888887555555543
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=553.54 Aligned_cols=477 Identities=22% Similarity=0.335 Sum_probs=394.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..|+.++|.+.++++|+++|+.+. +. .+||+||.+++.++|.+|.+. |+++||+|+|+++|+++|+++++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~~------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---GR------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---Cc------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 458999999999999999999864 32 499999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCC--CC-----CCC-----
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQ-----IPS----- 224 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~--~~-----~~~----- 224 (617)
||+++|++++|+++.++.+++.++++++++++++++......+.+....+ .++.++..+..+ .. ...
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAE 158 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccc
Confidence 99999999999999999999999999999999999988777666544333 234444332100 00 000
Q ss_pred --CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEE
Q 007119 225 --LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302 (617)
Q Consensus 225 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~ 302 (617)
.....+..+..|++....... .......++++++|+|||||||.||||++||++++..+......+.+..+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 236 (546)
T PRK08314 159 PPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA 236 (546)
T ss_pred cccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence 000011234566666544221 2233456889999999999999999999999999998887777788899999999
Q ss_pred eCChHHHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 007119 303 YLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (617)
Q Consensus 303 ~lPl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (617)
.+|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|.++..+.....
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------------ 298 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------------ 298 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------------
Confidence 999999999876 457899999999988 689999999999999999999999887754100
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCC
Q 007119 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460 (617)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~ 460 (617)
.+ ....+++|.+++||+++++++.+++.+.+++++++.||+||++..+........
T Consensus 299 ----------------~~--------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 354 (546)
T PRK08314 299 ----------------LA--------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP 354 (546)
T ss_pred ----------------cc--------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC
Confidence 00 001147999999999999999999999999999999999999876665544445
Q ss_pred CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC---CCCeeeecceEEEecCCc
Q 007119 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWIPGGR 537 (617)
Q Consensus 461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~ 537 (617)
..+++|.|+++++++|+|++++..++.+. .|||+|+|++++.||+++++.|++.|. .++||+|||+|+++++|+
T Consensus 355 ~~~~~G~~~~g~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~ 431 (546)
T PRK08314 355 KLQCLGIPTFGVDARVIDPETLEELPPGE---VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY 431 (546)
T ss_pred CCCccCcccCCeEEEEEeCCCCcCCCCCC---ceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence 56789999999999999977777777776 899999999999999999999998873 346999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH--------HHHHHHHHHcCCC
Q 007119 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ--------DALKAWAASEGIQ 606 (617)
Q Consensus 538 l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--------~~~~~~~~~~~~~ 606 (617)
+++.||+||+||+ +|++|+|.+||+++.++|+|.+++|++.++. +.++|+|++++ +.+.+|++++...
T Consensus 432 l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~ 510 (546)
T PRK08314 432 FFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAA 510 (546)
T ss_pred EEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhccc
Confidence 9999999999997 8999999999999999999999999997754 57899998743 6789999987666
Q ss_pred CChhhh
Q 007119 607 SLAPSD 612 (617)
Q Consensus 607 ~~~~~~ 612 (617)
++.|..
T Consensus 511 ~~~P~~ 516 (546)
T PRK08314 511 YKYPRI 516 (546)
T ss_pred CCCCcE
Confidence 666543
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-64 Score=552.52 Aligned_cols=479 Identities=24% Similarity=0.344 Sum_probs=383.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...|+.++|++.++++|+++|+... + +.+||+||.+++.++|++|.+ .|+++||+|+|+++|+++|++++
T Consensus 22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~ 92 (562)
T PRK05677 22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 3458999999999999999999753 2 359999999999999999997 59999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCC--CCCCC---------
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPS--------- 224 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~--~~~~~--------- 224 (617)
+||+++|++++|+++.++.+++.+++++++++++|++......+.+..... ..+.++..+..+ +....
T Consensus 93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK05677 93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKH 171 (562)
T ss_pred HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhh
Confidence 999999999999999999999999999999999999877665554433222 344444432110 00000
Q ss_pred ---CC-ccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCc--ccC-CC
Q 007119 225 ---LP-ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFY-PS 297 (617)
Q Consensus 225 ---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~-~~ 297 (617)
.. .........+.+.+..+...........++|+++|+|||||||.||||+++|++++.........+ .+. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK05677 172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC 251 (562)
T ss_pred ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCc
Confidence 00 000011234555554433222223345689999999999999999999999999987765544332 233 34
Q ss_pred cEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHH
Q 007119 298 DVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (617)
Q Consensus 298 d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~ 374 (617)
+++++.+|++|.+++.. .+..+..|++.++.+ .++..+++.|+++++|+++++|.++..+.....
T Consensus 252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------ 319 (562)
T PRK05677 252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------------ 319 (562)
T ss_pred cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc------------
Confidence 68899999999999875 445777888777665 588999999999999999999999987765200
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceecccccccccccccc
Q 007119 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 454 (617)
.+....+++|.+++||+++++++.+.+++.+++++++.||+||++.+++.
T Consensus 320 ------------------------------~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 369 (562)
T PRK05677 320 ------------------------------FRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSV 369 (562)
T ss_pred ------------------------------cccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceee
Confidence 00000148999999999999999999999899999999999999876665
Q ss_pred CCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec
Q 007119 455 LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (617)
Q Consensus 455 ~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (617)
........+++|.|+++++++|+| +++..++.|+ .|||+|+|+.++.|||++|+.|++.|+.+|||+|||+|++|+
T Consensus 370 ~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~ 445 (562)
T PRK05677 370 NPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGE---VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE 445 (562)
T ss_pred cCccCCCCCccCccCCCCEEEEEC-CCCCCCCCCC---CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC
Confidence 544445678999999999999999 5567777776 899999999999999999999999998899999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCC
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGI 605 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~ 605 (617)
||.++|.||++|+||+ +|++|+|.+||+.+.+||+|.+++|+|.+++ +.++++|++ +++++.++++++..
T Consensus 446 ~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~ 524 (562)
T PRK05677 446 DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLT 524 (562)
T ss_pred CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 9999999999999997 7999999999999999999999999998754 467777774 45788999998766
Q ss_pred CCChhhh
Q 007119 606 QSLAPSD 612 (617)
Q Consensus 606 ~~~~~~~ 612 (617)
++++|..
T Consensus 525 ~~~~P~~ 531 (562)
T PRK05677 525 GYKVPKA 531 (562)
T ss_pred hccCCcE
Confidence 6666654
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-64 Score=554.00 Aligned_cols=465 Identities=24% Similarity=0.290 Sum_probs=374.1
Q ss_pred HHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 81 l~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
+..+|.+ +.+|+++|+... ++. ..+||+||.++++++|++|.+ .|+++||+|+|+++|+++|+++++||+
T Consensus 43 ~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~ 113 (560)
T PLN02574 43 VSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL 113 (560)
T ss_pred HHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 3444544 679999998753 221 248999999999999999999 999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHH
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (617)
++|++++|++|.++.+++.++++++++++++++.+..+.+... ... ++.++...... ........|.++
T Consensus 114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~-----~~~~~~~~~~~~ 182 (560)
T PLN02574 114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD-----SKRIEFPKFYEL 182 (560)
T ss_pred HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc-----cCccCcccHHHH
Confidence 9999999999999999999999999999999998766555432 111 22222110000 001122346665
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----Ccc-cCCCcEEEEeCChHHHHHHHH
Q 007119 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTK-FYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 240 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~-~~~~d~~l~~lPl~h~~~~~~ 314 (617)
...... ..+.....++++++|+|||||||.||||++||+++++.+..+.. ... ....+++++.+|++|.+++..
T Consensus 183 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 261 (560)
T PLN02574 183 IKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL 261 (560)
T ss_pred hhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence 544322 12223456789999999999999999999999999887765532 122 235689999999999999876
Q ss_pred H-HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 315 Q-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 315 ~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
. +.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+....
T Consensus 262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 312 (560)
T PLN02574 262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG----------------------------- 312 (560)
T ss_pred HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-----------------------------
Confidence 4 45778899998887 7999999999999999999999999988763110
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCC--CCCCCCCcCCCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE--GDNLSGHVGSPN 469 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~ 469 (617)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||++.+++.... .....+++|.|.
T Consensus 313 ------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~ 380 (560)
T PLN02574 313 ------------VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLA 380 (560)
T ss_pred ------------cccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeC
Confidence 0000114899999999999999999999888 6899999999999865543221 224568999999
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
++++++|+|++++..++.|+ .|||||+|++++.|||++++.|++.|+.+|||+|||+|++|+||+++|+||+||+||
T Consensus 381 ~~~~v~i~d~~~g~~~~~g~---~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~ 457 (560)
T PLN02574 381 PNMQAKVVDWSTGCLLPPGN---CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIK 457 (560)
T ss_pred CCcEEEEEeCCCCcCCCCCC---CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheE
Confidence 99999999977777777776 899999999999999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+ +|++|+|.+||++|.+||.|.+++|+|.++. +.++++|+++ .+++.++++++..+++.|.
T Consensus 458 ~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 527 (560)
T PLN02574 458 Y-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVR 527 (560)
T ss_pred E-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCc
Confidence 7 8999999999999999999999999997653 4688888863 5788999998866666654
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-63 Score=544.62 Aligned_cols=469 Identities=26% Similarity=0.355 Sum_probs=389.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
++..|+.+++.++++++||++|+.+. +.. +++||.||.++++++|++|.+.|+++||+|+++++|+++|++++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~ 92 (537)
T PLN02246 20 PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF 92 (537)
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 45678999999999999999999753 211 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++|+++.++.+++..+++.++++++|++....+.+...... +.+ .++.++... .....
T Consensus 93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-----------~~~~~ 159 (537)
T PLN02246 93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-----------EGCLH 159 (537)
T ss_pred HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-----------CCcee
Confidence 99999999999999999999999999999999999998877666554321 222 344444321 11245
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~ 311 (617)
+.++...... ..+.....++++++++|||||||.||||+++|++++........ .+.+..+|++++.+|++|.++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 238 (537)
T PLN02246 160 FSELTQADEN-ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS 238 (537)
T ss_pred HHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence 5555443221 12233456899999999999999999999999999887665432 467889999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+....
T Consensus 239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------- 292 (537)
T PLN02246 239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-------------------------- 292 (537)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc--------------------------
Confidence 866 456799999999988 7899999999999999999999999887542100
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCC-----CCCCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD-----EGDNLSG 463 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~ 463 (617)
.....+++|.+++||+++++++.+++++.+ ++.+++.||+||++.+++... +.....+
T Consensus 293 ----------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 356 (537)
T PLN02246 293 ----------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG 356 (537)
T ss_pred ----------------cccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCC
Confidence 000114899999999999999999999988 678999999999986544321 1224567
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|+|+++++++|+|++++..++.+. .|||+++|++++.|||++++.|++.|+.+|||+|||+|+++++|++++.||
T Consensus 357 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR 433 (537)
T PLN02246 357 SCGTVVRNAELKIVDPETGASLPRNQ---PGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR 433 (537)
T ss_pred ccccccCCcEEEEecCCCCCcCCCCC---ceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEec
Confidence 89999999999999976777777776 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+||+ +|++|+|.+||+.+.++|+|.+++|++.++. +.++++|+++ .+++.++++++...++.|.
T Consensus 434 ~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 509 (537)
T PLN02246 434 LKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIH 509 (537)
T ss_pred ccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccc
Confidence 9999997 8999999999999999999999999997654 4688888864 4788999998876676664
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=545.58 Aligned_cols=461 Identities=22% Similarity=0.269 Sum_probs=380.8
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.++|.+.++++||++|+... ++ .+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~~------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---LG------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---CC------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999753 32 4999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++.+++.+++++++++++|++......+.......+....++.++... ....+++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 181 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED------------HDLTVEV 181 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc------------ccccHHH
Confidence 9999999999999999999999999999999999877666555433333333344332211 0124555
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
+...... ..+...+++.++++|||||||.||||+++|++++.........+.+..+|++++.+|++|.+++...+.+
T Consensus 182 ~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 258 (537)
T PRK13382 182 LIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA 258 (537)
T ss_pred HhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence 5433221 1122356889999999999999999999999988877776666778889999999999999998777888
Q ss_pred HHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
+..|+++++.. +++..+++.|+++++|++.++|+++..+.+.....
T Consensus 259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------------- 305 (537)
T PRK13382 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--------------------------------- 305 (537)
T ss_pred HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------------
Confidence 99999998876 79999999999999999999999999886521000
Q ss_pred hHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEEE
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i 476 (617)
.....+.++|.+++||+++++++.+.|.+.++.+++++||+||++.+++..... ....+++|+|+++++++|
T Consensus 306 -------~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i 378 (537)
T PRK13382 306 -------RNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI 378 (537)
T ss_pred -------cccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence 000011479999999999999999999999999999999999998765543221 245679999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeee
Q 007119 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (617)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i 556 (617)
+| ++++.++.|. .|||+++|++++.||+ ++.+.. + .+|||+|||++++|+||+++|+||+||+||. +|++|
T Consensus 379 ~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v 449 (537)
T PRK13382 379 LD-QDFREVPTGE---VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENV 449 (537)
T ss_pred EC-CCCCCCCCCC---eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEE
Confidence 99 5667777776 8999999999999998 555654 4 4799999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
+|.+||+.+.+||+|.+++|+|.++. +.++|+|+++ .++++++++++...+++|..
T Consensus 450 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 514 (537)
T PRK13382 450 YPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRD 514 (537)
T ss_pred CHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcE
Confidence 99999999999999999999998754 4688999864 36788999987666666643
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=556.96 Aligned_cols=465 Identities=18% Similarity=0.224 Sum_probs=366.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|++.++++||++|+.+....+...+.++++||+||.++++++|++|.+. +++||+|+|+++|+++|++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 3457999999999999999999986410011223457799999999999999999987 899999999999999999999
Q ss_pred HHHHhcCCeEEecC-CCCC--HHHHHHHHHhccccEEEecccchHHHHhhccCCCC--ceEEEEECCCCCCCCCCCccCC
Q 007119 156 HACSAYSFISVPLY-DTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTG 230 (617)
Q Consensus 156 lA~~~~G~v~vpl~-~~~~--~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~~ 230 (617)
+||+++|++++|++ +..+ .+++.+++++++++++|++.+..+.+.+.....+. ...++.++....
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc----------
Confidence 99999999999994 4443 67899999999999999998766555443322221 122333322100
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHH
Q 007119 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (617)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 310 (617)
.. .. ........++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+
T Consensus 167 --------~~--~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~ 234 (631)
T PRK07769 167 --------EV--GA--TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM 234 (631)
T ss_pred --------cc--cc--ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence 00 00 0111235678999999999999999999999999998887777777888999999999999999
Q ss_pred HHHHHHHHHHhCcEEEEec---C--ChhhHHHHHHhhCC---eEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 007119 311 ERANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRP---TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (617)
Q Consensus 311 ~~~~~~~~l~~G~~~~~~~---~--~~~~l~~~i~~~~~---t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (617)
++...+.+++.|+++++++ + ++..+++.+.++++ |++..+|.++..+..... ...
T Consensus 235 gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~--------------- 297 (631)
T PRK07769 235 GLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LPK--------------- 297 (631)
T ss_pred hhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cch---------------
Confidence 9988777888899998875 2 88899999998876 789999998876643100 000
Q ss_pred HHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh---CC---ceeccccccccccccccCC
Q 007119 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQLD 456 (617)
Q Consensus 383 ~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~---~~---~v~~~YG~TE~~~~~~~~~ 456 (617)
.+ . .....++||.+++||+++++++.+.|.+.| |+ .++++||+||++..++...
T Consensus 298 ------~~------~--------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 357 (631)
T PRK07769 298 ------DG------E--------PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTP 357 (631)
T ss_pred ------hc------c--------cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccC
Confidence 00 0 000114899999999999999999999987 33 5999999999976555432
Q ss_pred CCC---------------------------CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccC
Q 007119 457 EGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (617)
Q Consensus 457 ~~~---------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~ 509 (617)
... ...+++|+|.++.+++|+|.+++..++.|+ .|||||+||+++.|||+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge---~GEl~v~gp~v~~GY~~ 434 (631)
T PRK07769 358 MDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ---IGEIWLHGNNIGTGYWG 434 (631)
T ss_pred CCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC---EEEEEecCCCccccccC
Confidence 211 012479999999999999977777777776 89999999999999999
Q ss_pred ChhhhhcccC-----------------CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc-CCCc
Q 007119 510 DEIQTKEVID-----------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKFV 571 (617)
Q Consensus 510 ~~~~t~~~~~-----------------~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~-~p~V 571 (617)
+++.|++.|. .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||+++.+ ||.|
T Consensus 435 ~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v 512 (631)
T PRK07769 435 KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKAL 512 (631)
T ss_pred ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhccccc
Confidence 9999999884 25899999999995 9999999999999997 8999999999999986 8999
Q ss_pred ce--EEEEeeCC----------------------CCeEEEEEEeC-------HHHHHHHHHHcCC
Q 007119 572 GQ--CFVYGDSF----------------------NSALVAIVSVD-------QDALKAWAASEGI 605 (617)
Q Consensus 572 ~~--~~V~g~~~----------------------~~~~va~vv~~-------~~~~~~~~~~~~~ 605 (617)
.+ ++|+|.++ .+.++|+|++. .+++.++++++..
T Consensus 513 ~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~ 577 (631)
T PRK07769 513 RTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIA 577 (631)
T ss_pred cCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHHHH
Confidence 98 89999776 24688888753 3567888887644
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=549.30 Aligned_cols=447 Identities=22% Similarity=0.314 Sum_probs=356.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCc----cCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGT----VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~----~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~ 153 (617)
..|+.++|.+.++++||++|+.+. ++. ...++++||+||.+++.++|++|.+.|+++||+|+++++|+++|++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~ 81 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA 81 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence 357889999999999999999864 321 1224479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc--chHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~--~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
+++||+++|++++|+++.++.+++.+++++++++++|++.. ....+.... .+..+.++.++... ..
T Consensus 82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~----------~~ 149 (552)
T PRK09274 82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG--KPSVRRLVTVGGRL----------LW 149 (552)
T ss_pred HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC--ccchhheecccccc----------cc
Confidence 99999999999999999999999999999999999998752 112221110 12233333332210 00
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
....++++...............++++++|+|||||||.||||++||+++...+......+++.++|+.++.+|++|.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 229 (552)
T PRK09274 150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFG 229 (552)
T ss_pred CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhh
Confidence 11235554422211122233456789999999999999999999999999998887777788899999999999998654
Q ss_pred HHHHHHHHHhCcEEEEec--------CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 007119 312 RANQVMTVYSGVAVGFYQ--------GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (617)
Q Consensus 312 ~~~~~~~l~~G~~~~~~~--------~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (617)
+..|+++++.+ .++..+++.|+++++|+++++|.+++.+.+.....
T Consensus 230 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------- 283 (552)
T PRK09274 230 -------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN------------------- 283 (552)
T ss_pred -------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc-------------------
Confidence 34577777643 47899999999999999999999999987632110
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh--CCceeccccccccccccccCCCC---
Q 007119 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEG--- 458 (617)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~~--- 458 (617)
....++||.+++||+++++++.+++++.| |+++++.||+||++++++.....
T Consensus 284 -----------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 340 (552)
T PRK09274 284 -----------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILF 340 (552)
T ss_pred -----------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhc
Confidence 00114899999999999999999999998 46999999999998765533211
Q ss_pred -------CCCCCCcCCCCcCeEEEEeecC--------CCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc--CCC
Q 007119 459 -------DNLSGHVGSPNAACEIKLVDVP--------EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI--DED 521 (617)
Q Consensus 459 -------~~~~~~vG~p~~~~~v~ivd~~--------~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~--~~~ 521 (617)
.....++|+|+++++++|+|.. ++..++.|+ .|||+|+|++++.|||++|+.|.+.| +.+
T Consensus 341 ~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~ 417 (552)
T PRK09274 341 ATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE---IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQ 417 (552)
T ss_pred cccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC---eeEEEEecCcccccccCChHHhhhhhcccCC
Confidence 1123479999999999999953 234455554 89999999999999999999998876 446
Q ss_pred C--eeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeC
Q 007119 522 G--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVD 592 (617)
Q Consensus 522 g--w~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~ 592 (617)
| ||+|||+|++|+||+|+++||+||+||+ +|++|+|.+||+++.+||+|.+|+|+|.++. +.++++|+++
T Consensus 418 g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~ 491 (552)
T PRK09274 418 GDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELE 491 (552)
T ss_pred CCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEcc
Confidence 7 9999999999999999999999999996 8999999999999999999999999997754 4678888864
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=554.59 Aligned_cols=485 Identities=16% Similarity=0.177 Sum_probs=379.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...+..+++|.++++.+||++|+.+. +...+..+.+||+||.+++.++|++|.+.|+++||+|+++++|++|+++++
T Consensus 50 ~~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 126 (629)
T PRK10524 50 GRTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAM 126 (629)
T ss_pred cEeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34556688898888899999999875 322334567999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhccCC-CCceEEEEECCCCCCCCCC
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSL 225 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~~~~iv~~~~~~~~~~~~ 225 (617)
+||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.++.... +....++.++...... .
T Consensus 127 lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~- 204 (629)
T PRK10524 127 LACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-A- 204 (629)
T ss_pred HHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-C-
Confidence 9999999999999999999999999999999999997542 22333333222 2344556554321100 0
Q ss_pred CccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeC
Q 007119 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYL 304 (617)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~l 304 (617)
........|.++.........+.....++|+++|+|||||||.||||+++|++++..... ....+++.++|++++.+
T Consensus 205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 282 (629)
T PRK10524 205 --RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCAS 282 (629)
T ss_pred --cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcC
Confidence 001112356666543222112223346789999999999999999999999997654433 33446788999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 007119 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (617)
Q Consensus 305 Pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (617)
|+.|.++... .+.+++.|+++++++ .++..+++.++++++|++.++|++++.+.+.-...
T Consensus 283 ~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 348 (629)
T PRK10524 283 DIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL-------------- 348 (629)
T ss_pred CCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc--------------
Confidence 9999888654 567899999999886 36788999999999999999999998775420000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC
Q 007119 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458 (617)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 458 (617)
.+....++||.+++||+++++++.+++.+.+++++++.||+||++..+....+.
T Consensus 349 --------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 402 (629)
T PRK10524 349 --------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARG 402 (629)
T ss_pred --------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCC
Confidence 000011489999999999999999999999999999999999998433222221
Q ss_pred ----CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc---cccccccCChhhhhccc---CCCCeeeecc
Q 007119 459 ----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGD 528 (617)
Q Consensus 459 ----~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~---~~~gw~~TGD 528 (617)
....+++|.|+++++++|+|.+++..++.++ .|||+|+|| +++.|||++++.+.+.+ ..+|||+|||
T Consensus 403 ~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~---~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 479 (629)
T PRK10524 403 VEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE---KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFD 479 (629)
T ss_pred cccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC---cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCC
Confidence 2456899999999999999954777777776 899999998 57899999998877654 1468999999
Q ss_pred eEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------------
Q 007119 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------------ 593 (617)
Q Consensus 529 lg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------------ 593 (617)
+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++++|++.+
T Consensus 480 l~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~ 558 (629)
T PRK10524 480 WGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLA 558 (629)
T ss_pred cEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHH
Confidence 9999999999999999999997 7999999999999999999999999998765 57889998642
Q ss_pred --HHHHHHHHHcCCCCChhh
Q 007119 594 --DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 594 --~~~~~~~~~~~~~~~~~~ 611 (617)
+++.++++++...++.|.
T Consensus 559 ~~~~i~~~~~~~l~~~~~P~ 578 (629)
T PRK10524 559 LEKEIMALVDSQLGAVARPA 578 (629)
T ss_pred HHHHHHHHHHhhcCCCcCCC
Confidence 357778877655555543
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=553.60 Aligned_cols=478 Identities=19% Similarity=0.204 Sum_probs=368.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.+.+.. +.++++|+++. +. .+..+.+||+||.+++.++|++|.++|+++||+|+|+++|++|++++++||
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~ 159 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT 159 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 455555443 35789999875 32 344577999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhccCCCCceEEEEECCCCCCCCCCCccC
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 229 (617)
+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.++...++.++.++.++.......... .
T Consensus 160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~ 237 (652)
T TIGR01217 160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAP--K 237 (652)
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccc--c
Confidence 9999999999999999999999999999999998653 3455555555666777777653221100000 0
Q ss_pred CceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHH-HHHhhhcCcccCCCcEEEEeCChHH
Q 007119 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAGATLGTKFYPSDVYISYLPLAH 308 (617)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~lPl~h 308 (617)
......|+++...............++|+++|+|||||||.||||++||++++. ........+++.++|++++++|+.|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 317 (652)
T TIGR01217 238 IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317 (652)
T ss_pred ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcch
Confidence 012346777765422211222345678999999999999999999999999754 3344444578899999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 007119 309 IYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (617)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (617)
+... ..+.+|+.|+++++++ .++..+++.++++++|++..+|.++..+...
T Consensus 318 ~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------- 373 (652)
T TIGR01217 318 MMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA----------------------- 373 (652)
T ss_pred hhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-----------------------
Confidence 8642 3457899999999986 2678899999999999998777766554321
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC--CceeccccccccccccccCCC-CCC
Q 007119 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG--GRVTEGYGMTETSCLISQLDE-GDN 460 (617)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (617)
+..+ ......++||.+++||+++++++.+++.+.++ ..+.+.||+||+++......+ ...
T Consensus 374 ------~~~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 436 (652)
T TIGR01217 374 ------GVHP-----------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPV 436 (652)
T ss_pred ------CCCc-----------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCC
Confidence 0000 00001158999999999999999999998885 457789999997543332222 224
Q ss_pred CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc--cccccccCChhhhh---cccC-CCCeeeecceEEEec
Q 007119 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK---EVID-EDGWFHTGDIGMWIP 534 (617)
Q Consensus 461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~--~v~~GY~~~~~~t~---~~~~-~~gw~~TGDlg~~~~ 534 (617)
..+++|.|.+|++++|+| ++++.+ .|+ .|||+++|| +++.|||++|+.|+ ..|. .+|||+|||+|++|+
T Consensus 437 ~~g~~g~p~~g~~v~ivd-~~g~~~-~g~---~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~ 511 (652)
T TIGR01217 437 HIGEIQAPGLGTAVQSWD-PEGKPV-TGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP 511 (652)
T ss_pred cCCccCCCcCCCceEEEC-CCCCCC-CCC---ccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC
Confidence 568899999999999999 555554 344 899999996 68999999998764 2232 268999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHH
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAAS 602 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~ 602 (617)
||+|+|+||+||+||. +|++|+|.|||++|.+||.|.+++|+|.+++ +.++|+|++++ +++.+++++
T Consensus 512 dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~ 590 (652)
T TIGR01217 512 RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRA 590 (652)
T ss_pred CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999995 9999999999999999999999999998754 57899999743 368888887
Q ss_pred cCCCCChhhh
Q 007119 603 EGIQSLAPSD 612 (617)
Q Consensus 603 ~~~~~~~~~~ 612 (617)
+..++++|+.
T Consensus 591 ~l~~~~~P~~ 600 (652)
T TIGR01217 591 GLSPRHVPDE 600 (652)
T ss_pred hCCCCcCCCE
Confidence 7666666653
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=551.73 Aligned_cols=478 Identities=18% Similarity=0.204 Sum_probs=373.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.+.+.++ .+|+++|+.+. +. .+..+.+||+||.+++.++|++|.+.|+++||+|+|+++|++|++++++||
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~ 159 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT 159 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3555555442 58999999875 32 345678999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhccCCCCceEEEEECCCCCCCCCCCccC
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 229 (617)
+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.++...++.++.++.++...... ....
T Consensus 160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~ 236 (655)
T PRK03584 160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAA---AAAA 236 (655)
T ss_pred HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcc---cccc
Confidence 9999999999999999999999999999999998643 233444444556666666665322100 0001
Q ss_pred CceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHH-HHhhhcCcccCCCcEEEEeCChHH
Q 007119 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYLPLAH 308 (617)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~lPl~h 308 (617)
......|+++...............++++++|+|||||||.||||++||++++.. .......+.+.++|+++++.|+.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 316 (655)
T PRK03584 237 LPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGW 316 (655)
T ss_pred cCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchH
Confidence 1123567777653222222233456799999999999999999999999997644 444455578899999999999998
Q ss_pred HHHHHHHHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 007119 309 IYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (617)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (617)
+... ..+.+|+.|+++++++ .++..+++.++++++|++.++|+++..+.+.-.
T Consensus 317 ~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------------- 374 (655)
T PRK03584 317 MMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL--------------------- 374 (655)
T ss_pred HhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------------
Confidence 7543 3557899999999985 378999999999999999999999987754100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh--CCceeccccccccccccccCCC-CCC
Q 007119 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDE-GDN 460 (617)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (617)
.+. .....++||.+++||+++++++.+++.+.+ ++.+.+.||+||+++......+ ...
T Consensus 375 --------~~~-----------~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 435 (655)
T PRK03584 375 --------VPG-----------ETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPV 435 (655)
T ss_pred --------Ccc-----------ccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCc
Confidence 000 000114899999999999999999999988 4789999999998654332222 234
Q ss_pred CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc--cccccccCChhhhh--cc-cC-CCCeeeecceEEEec
Q 007119 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK--EV-ID-EDGWFHTGDIGMWIP 534 (617)
Q Consensus 461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~--~v~~GY~~~~~~t~--~~-~~-~~gw~~TGDlg~~~~ 534 (617)
..+++|.|.+|++++|+| +++..+ .++ .|||+|+|| +++.|||++++.++ +. |. .+|||+|||+|++|+
T Consensus 436 ~~g~~g~p~~g~~~~ivd-~~g~~~-~g~---~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~ 510 (655)
T PRK03584 436 YRGEIQCRGLGMAVEAWD-EDGRPV-VGE---VGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE 510 (655)
T ss_pred CCCccCCCcCCceeEEEC-CCCCCC-CCC---ceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC
Confidence 568899999999999999 555555 454 899999996 79999999998654 22 21 268999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHH
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAAS 602 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~ 602 (617)
||+|+|+||+||+||+ +|++|+|.|||+++.+||.|.+|+|+|.++. +.++|+|++++ +++.+++++
T Consensus 511 dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~ 589 (655)
T PRK03584 511 HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRT 589 (655)
T ss_pred CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 9999999999999996 8999999999999999999999999998753 57899999643 467888888
Q ss_pred cCCCCChhhh
Q 007119 603 EGIQSLAPSD 612 (617)
Q Consensus 603 ~~~~~~~~~~ 612 (617)
+...+++|..
T Consensus 590 ~L~~~~~P~~ 599 (655)
T PRK03584 590 NLSPRHVPDK 599 (655)
T ss_pred hCCCCcCCCE
Confidence 7666666643
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=538.79 Aligned_cols=468 Identities=22% Similarity=0.303 Sum_probs=381.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.++|.+.++.+|+++|+... +...+..+.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++||
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999999763 222233467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceE
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
+++|++++|+++.++.+++.++++++++++++++.... ....+....++..+.++..+... .
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence 99999999999999999999999999999999986542 22223333445556666654321 1
Q ss_pred eeHHHHHhcCccCC-------CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCCh
Q 007119 234 LTYSNLLSQGRSNL-------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (617)
Q Consensus 234 ~~~~~l~~~~~~~~-------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl 306 (617)
..++.++....... .......++++++|+|||||||.||||+++|+++...+......+.+..+|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 245 (538)
T TIGR03208 166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPM 245 (538)
T ss_pred cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCc
Confidence 12333332111000 01123467899999999999999999999999999988877777788899999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
+|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------------- 305 (538)
T TIGR03208 246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES-------------------- 305 (538)
T ss_pred hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc--------------------
Confidence 99998766 567899999998877 79999999999999999999999998876521100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC--CCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLS 462 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~ 462 (617)
+ ...+++|.+++||+++++++.+++.+.+++++++.||+||++.+++...... ...
T Consensus 306 -----~-----------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 363 (538)
T TIGR03208 306 -----G-----------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKAS 363 (538)
T ss_pred -----C-----------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhcc
Confidence 0 0014899999999999999999999989999999999999987665443221 234
Q ss_pred CCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEe
Q 007119 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
.++|+|+++++++|+| +++..++.++ .|||+|+|+.++.||+++|+.|+ ++.+|||+|||+|++|++|+++++|
T Consensus 364 ~~~G~~~~g~~v~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~g 437 (538)
T TIGR03208 364 TTDGRPLPGVEVKVID-ANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRING 437 (538)
T ss_pred CcccccCCCCEEEEEC-CCCCCCcCCC---CcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEe
Confidence 6799999999999999 5566666665 89999999999999999998875 3578999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCC-CCChhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGI-QSLAPS 611 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~-~~~~~~ 611 (617)
|+||+||. +|++|+|.+||+++.+||+|.+++|+|.+++ +.++|+|++. .+.+.++++++.+ .++.|.
T Consensus 438 R~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~ 515 (538)
T TIGR03208 438 RSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPE 515 (538)
T ss_pred ccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCc
Confidence 99999995 8999999999999999999999999998754 5688888864 4678888886433 344443
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=536.56 Aligned_cols=475 Identities=24% Similarity=0.300 Sum_probs=387.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..+||.++|.+.++++||++|+.+. +. .++++.+||.||.++++++|++|.++|+++||+|+|+++|+.+|+++++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l 80 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999875 43 2445779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCC-CCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEV-PTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~-~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
||+++|++++|+++.++.+++.+++++++++.++++.+..+.+.++.... ..++.++..+..... .....+
T Consensus 81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 152 (517)
T PRK08008 81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSS 152 (517)
T ss_pred HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccC
Confidence 99999999999999999999999999999999999988777666554332 335556555442111 012345
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (617)
++++............+..++++++|+|||||||.||||++||+++............+..++++++.+|++|..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 5555433222112223456789999999999999999999999999865443333345788999999999999876665
Q ss_pred HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+.++..|+++++.+ .++..+++.++++++|++.++|.+++.+......
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 282 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPS------------------------------ 282 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc------------------------------
Confidence 556888999999987 7899999999999999999999999877541000
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-CCCCCcCCCCcCe
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAAC 472 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ 472 (617)
. .....+++.+.+++ +++.+....+.+.+++++++.||+||+++.++...+.+ ...+++|.|++++
T Consensus 283 -~-----------~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~ 349 (517)
T PRK08008 283 -A-----------NDRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY 349 (517)
T ss_pred -c-----------ccccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCc
Confidence 0 00013677777654 78999999999889999999999999986555433322 4567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeC---ccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 473 EIKLVDVPEMNYTSEDQPCPRGEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g---~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
+++|+| +++..++.++ .|||+++| ++++.|||++++.|++.|+.+|||+|||+|++|+||+++++||+||+||
T Consensus 350 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~ 425 (517)
T PRK08008 350 EAEIRD-DHNRPLPAGE---IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK 425 (517)
T ss_pred EEEEEC-CCCCCCCCCC---cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence 999999 5667777776 89999998 6899999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+ +|++|+|.+||+++.+||.|.+++|+|.++. +.++++|+++ .+++.+|++++...+++|.
T Consensus 426 ~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 495 (517)
T PRK08008 426 R-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPS 495 (517)
T ss_pred e-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCc
Confidence 6 8999999999999999999999999998754 4788888865 4678899998765566554
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=537.88 Aligned_cols=468 Identities=21% Similarity=0.268 Sum_probs=385.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..+|+.++|++.++++||++|+.+. + +.+||+||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~l 89 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFL 89 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 5578999999999999999999764 3 249999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++++++++++++.+....+.+.......++.++.++..... ...... ..
T Consensus 90 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~ 162 (542)
T PRK06155 90 GCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV----SVPAGW---ST 162 (542)
T ss_pred HHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc----cccccc---ch
Confidence 99999999999999999999999999999999999988777666554433345556666542210 000000 01
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
.++... ..........++++++|+|||||||.||||+++|+++..........+.+.+++++++.+|++|.+++...+
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~ 240 (542)
T PRK06155 163 APLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF 240 (542)
T ss_pred hhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence 111111 111122334678999999999999999999999999988777666678889999999999999999998888
Q ss_pred HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.+++.|+++++.+ +++..+++.|+++++|++.++|.++..+.+....
T Consensus 241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~-------------------------------- 288 (542)
T PRK06155 241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR-------------------------------- 288 (542)
T ss_pred HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc--------------------------------
Confidence 8999999999877 7899999999999999999999988877552100
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEE
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 475 (617)
.....+++|.++.|| +++++.+.+++.+++++++.||+||++.++.... .....+++|.|.++++++
T Consensus 289 ----------~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~ 355 (542)
T PRK06155 289 ----------ESDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEAR 355 (542)
T ss_pred ----------cccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEE
Confidence 000114788888766 5788899999989999999999999987665432 345678899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEeCc---cccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCC
Q 007119 476 LVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (617)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~ 552 (617)
|+| +++..++.+. .|||+++|+ +++.||+++++.|++.| .+|||+|||+|++++||+++|+||++|+||. +
T Consensus 356 i~d-~~~~~~~~g~---~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~ 429 (542)
T PRK06155 356 VVD-EHDQELPDGE---PGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-R 429 (542)
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEe-C
Confidence 999 5567777776 899999998 69999999999999998 7999999999999999999999999999995 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhhhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~~~ 613 (617)
|++|+|++||+++.++|+|.+++|+|.+++ ..+.+++++ +..++.+|++++...+++|..+
T Consensus 430 G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i 499 (542)
T PRK06155 430 GENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYV 499 (542)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEE
Confidence 999999999999999999999999998753 567777775 3577899999876666666543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=535.04 Aligned_cols=472 Identities=27% Similarity=0.397 Sum_probs=400.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
+..++.+.|++.++.+|+++|+.+. + +.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l 73 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL 73 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999863 2 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+.+..+++++++++++++.............++.++.++......... ......+|
T Consensus 74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (513)
T PRK07656 74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP------HTEKMKTF 147 (513)
T ss_pred HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc------CccccccH
Confidence 999999999999999999999999999999999999887766665555556666666654432110 01133567
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-H
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-Q 315 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~ 315 (617)
+++...... ..+.....++++++|+|||||||.||+|.+||+++...+......+.+.++|++++.+|++|.+++.. .
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (513)
T PRK07656 148 TDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV 226 (513)
T ss_pred HHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence 777654332 12334467889999999999999999999999999988887777788999999999999999999876 5
Q ss_pred HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------ 276 (513)
T PRK07656 227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS------------------------------ 276 (513)
T ss_pred HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC------------------------------
Confidence 67899999998876 78999999999999999999999999887631100
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccccccccCCCCC-C--CCCCcCCCCc
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD-N--LSGHVGSPNA 470 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~-~--~~~~vG~p~~ 470 (617)
....+++|.+++||+++++++.+.+++.+++ .+++.||+||++++++...... . ..+++|.|++
T Consensus 277 ------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~ 344 (513)
T PRK07656 277 ------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIA 344 (513)
T ss_pred ------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCC
Confidence 0011489999999999999999999999998 8999999999987776554432 2 2688999999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeec
Q 007119 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (617)
Q Consensus 471 ~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl 550 (617)
+++++|+| +++..++.+. .|||+++|+.++.||+++++.+...+..+|||+|||+|+++++|.++++||.+|+||+
T Consensus 345 ~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~ 420 (513)
T PRK07656 345 GVENKIVN-ELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV 420 (513)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEe
Confidence 99999999 5567777776 8999999999999999999999999977999999999999999999999999999997
Q ss_pred CCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 551 ~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+|++|+|.+||+.+.++|+|.+++|++.++. +.++++|+++ ++++.+|++++..++.+|.
T Consensus 421 -~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 489 (513)
T PRK07656 421 -GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPR 489 (513)
T ss_pred -CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCC
Confidence 8999999999999999999999999997643 4678888864 4788899988765565554
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=560.06 Aligned_cols=463 Identities=23% Similarity=0.282 Sum_probs=364.9
Q ss_pred CCCCCHHHHHHHHHHhcCC-CccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.+..|+.++|.+.++++|+ ++|+.. + .++++||+||.++++++|++|.+. +++||+|+|+++|++||+++
T Consensus 201 ~~~~t~~~~l~~~~~~~p~~~~a~~~-----~---~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~ 271 (718)
T PRK08043 201 RPRETLYEALLSAQYRYGAGKPCIED-----V---NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAV 271 (718)
T ss_pred CCCCCHHHHHHHHHHHhCCCCcceEc-----C---CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHH
Confidence 3567999999999999998 577742 1 124699999999999999999987 59999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHH--hhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL--SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~--~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
++||+++|++++|+++.++++++.+++++++++++|++.+..+... .....++.++.+ .+++....
T Consensus 272 ~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~----------- 339 (718)
T PRK08043 272 IFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLKDD----------- 339 (718)
T ss_pred HHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhhhh-----------
Confidence 9999999999999999999999999999999999999876543211 111112222222 22221000
Q ss_pred EeeHHHH--H-hcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 007119 233 ILTYSNL--L-SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 233 ~~~~~~l--~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (617)
..+.+. . ..............++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.
T Consensus 340 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~ 418 (718)
T PRK08043 340 -VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS 418 (718)
T ss_pred -cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhh
Confidence 011110 0 000000111123467999999999999999999999999999988777777788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
+++.. .+.+++.|+++++.+ .++..+.+.+.++++|++.++|+++..+....
T Consensus 419 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~------------------------- 473 (718)
T PRK08043 419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA------------------------- 473 (718)
T ss_pred hhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-------------------------
Confidence 99876 567899999999886 46778889999999999999999887654310
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcC
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (617)
. ....++||.+++||+++++++.+.+++.+|++++++||+||+++.++...+.....+++|
T Consensus 474 --~-----------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG 534 (718)
T PRK08043 474 --N-----------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVG 534 (718)
T ss_pred --C-----------------cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCC
Confidence 0 000148999999999999999999999999999999999999876665544445678999
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccC--Chhh-------hhcccCCCCeeeecceEEEecCCc
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK--DEIQ-------TKEVIDEDGWFHTGDIGMWIPGGR 537 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~--~~~~-------t~~~~~~~gw~~TGDlg~~~~dG~ 537 (617)
+|+|+++++|+|.++ .+ +.|||+++|++++.|||+ +++. +.+.+..+|||+|||+|++|+||+
T Consensus 535 ~p~pg~~~~i~d~~~-----~~---~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 606 (718)
T PRK08043 535 RILPGMDARLLSVPG-----IE---QGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGF 606 (718)
T ss_pred CcCCCCeeEEecCCC-----CC---CceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCc
Confidence 999999999998432 12 269999999999999998 4552 333334689999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEE---eCHHHHHHHHHHcCC-CCChh
Q 007119 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVS---VDQDALKAWAASEGI-QSLAP 610 (617)
Q Consensus 538 l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv---~~~~~~~~~~~~~~~-~~~~~ 610 (617)
++|+||+||+||+ +|++|+|.|||+++.+|+.+.+++|++.+++ +.++++++ ++.+++.+|++++++ .+++|
T Consensus 607 l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~~l~~~~~~~~l~~~~vP 685 (718)
T PRK08043 607 VQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTREKLQQYAREHGVPELAVP 685 (718)
T ss_pred EEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHHHHHHHHHhcCCCcccCC
Confidence 9999999999996 7999999999999999998888888887654 46667664 356789999998854 46776
Q ss_pred hhh
Q 007119 611 SDC 613 (617)
Q Consensus 611 ~~~ 613 (617)
+.+
T Consensus 686 ~~i 688 (718)
T PRK08043 686 RDI 688 (718)
T ss_pred ceE
Confidence 543
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=540.91 Aligned_cols=482 Identities=23% Similarity=0.313 Sum_probs=390.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..|+.++|++.+..+|+++|+.+. +. +.+.+||+||.+++.++|++|.+ .|+++||+|+++++|+++|+++++
T Consensus 9 ~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l 82 (576)
T PRK05620 9 PLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF 82 (576)
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 358999999999999999998763 21 24679999999999999999986 799999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++..+.++.++................+.+|
T Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (576)
T PRK05620 83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSY 162 (576)
T ss_pred HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccH
Confidence 99999999999999999999999999999999999988877777766666666766666532211111111123345678
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhh--hcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
.++.+.... ..+.....++++++++|||||||.||||++||+++....... ...+.+..+|++++.+|++|.+++..
T Consensus 163 ~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 241 (576)
T PRK05620 163 EALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV 241 (576)
T ss_pred HHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHH
Confidence 888764322 222334567899999999999999999999999986654432 23467888999999999999999988
Q ss_pred HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+.++..|+++++.+ .++..+++.++++++|++.++|.++..+........
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 294 (576)
T PRK05620 242 PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP--------------------------- 294 (576)
T ss_pred HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------------
Confidence 888999999998875 689999999999999999999999988765311000
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC--------CCCCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--------NLSGH 464 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--------~~~~~ 464 (617)
....++|.+++||+++++++.+.++..+++++++.||+||++..++...+.+ ....+
T Consensus 295 ---------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (576)
T PRK05620 295 ---------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVS 359 (576)
T ss_pred ---------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccc
Confidence 0003799999999999999999999999999999999999987655433221 11347
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhh----------------hcccCCCCeeeecc
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------------KEVIDEDGWFHTGD 528 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t----------------~~~~~~~gw~~TGD 528 (617)
+|++.++++++++|. +..++.. +...|||+++|++++.|||++++.| .+.|..+|||+|||
T Consensus 360 ~G~~~~~~~~~i~~~--g~~~~~~-~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD 436 (576)
T PRK05620 360 QGRFPASLEYRIVND--GQVMEST-DRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGD 436 (576)
T ss_pred cCCcCCceeEEEecC--CccccCC-CCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCc
Confidence 899999999999983 3333211 1137999999999999999999988 33455689999999
Q ss_pred eEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC---------HHHH
Q 007119 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD---------QDAL 596 (617)
Q Consensus 529 lg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~~ 596 (617)
+|++++||+++++||+||+||. +|++|+|.+||+.|.+||.|.+++|+|.++. +.++|+|++. .+++
T Consensus 437 ~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l 515 (576)
T PRK05620 437 VGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERL 515 (576)
T ss_pred eEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHH
Confidence 9999999999999999999995 8999999999999999999999999998764 4677777642 3678
Q ss_pred HHHHHHcCCCCChhhh
Q 007119 597 KAWAASEGIQSLAPSD 612 (617)
Q Consensus 597 ~~~~~~~~~~~~~~~~ 612 (617)
+++++++...+++|..
T Consensus 516 ~~~l~~~L~~~~~P~~ 531 (576)
T PRK05620 516 RDQLRDRLPNWMLPEY 531 (576)
T ss_pred HHHHHhhCccccCCeE
Confidence 9999987666666644
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=534.78 Aligned_cols=466 Identities=21% Similarity=0.261 Sum_probs=380.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.++|.++++++|+++|+.+. + +.+||+||.++++++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 91 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF 91 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 4568999999999999999999753 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchH-----HHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-----SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|++++++++.++.+++.++++.+++++++++..... .........+.++.++....... .
T Consensus 92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~- 161 (527)
T TIGR02275 92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV---------E- 161 (527)
T ss_pred HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC---------c-
Confidence 99999999999999999999999999999999999865321 11222223444555555432110 0
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
..+...+..... ..+.....++++++|+|||||||.||||++||+++...+......+.+..+|++++.+|++|.++
T Consensus 162 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~ 238 (527)
T TIGR02275 162 --AELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP 238 (527)
T ss_pred --chhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence 011111111111 11223456899999999999999999999999999988887777788899999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q 007119 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (617)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (617)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+.....
T Consensus 239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------ 294 (527)
T TIGR02275 239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS------------------------ 294 (527)
T ss_pred hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc------------------------
Confidence 875 566889999998866 78999999999999999999999998776531100
Q ss_pred cCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCC-CCCCCCCCcCC
Q 007119 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGS 467 (617)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~ 467 (617)
.....++|.+++||+++++++.+.+.+.+|+++++.||+||++....... ..+...+++|.
T Consensus 295 ------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 356 (527)
T TIGR02275 295 ------------------RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGR 356 (527)
T ss_pred ------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCC
Confidence 00114899999999999999999999999999999999999754332211 12234578999
Q ss_pred CC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
|+ ++.+++|+| ++++..+.|+ .|||+++|+.++.|||++++.|++.|+.||||+|||+|++++||+++++||.||
T Consensus 357 ~~~~~~~v~i~d-~~g~~~~~g~---~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d 432 (527)
T TIGR02275 357 PMSPDDEVRVVD-DHGNPVAPGE---TGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKD 432 (527)
T ss_pred CCCCCceEEEEC-CCCCCCCCCC---ceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccc
Confidence 99 589999999 5566666665 899999999999999999999999998999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCC-CCChhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGI-QSLAPS 611 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~~~~-~~~~~~ 611 (617)
+||. +|++|+|.+||+++.+||+|.+++|+|.+++ +.++|+|+++ ..++.++++++.+ .+++|.
T Consensus 433 ~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~~~~~P~ 505 (527)
T TIGR02275 433 QINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPD 505 (527)
T ss_pred eeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCccccCCC
Confidence 9995 8999999999999999999999999998765 5788888864 4678999988644 355554
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=541.25 Aligned_cols=472 Identities=22% Similarity=0.289 Sum_probs=367.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|.+.++++||++|+.+. +. .+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~~------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---KT------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---Cc------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999764 32 4999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCC-----ceEEEEECCCCCCCCCCCccCCceE
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-----VRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~-----~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
+++|++++||++.++.+++.++|+.++++++|++.+..+.+.++...++. ...++.++....... .....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 159 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSSEE 159 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Ccccc
Confidence 99999999999999999999999999999999988776666554433221 112444443211100 01122
Q ss_pred eeHHHHHhcCccCCCC----CCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 007119 234 LTYSNLLSQGRSNLQP----FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 234 ~~~~~l~~~~~~~~~~----~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (617)
.+++++...+...... .....++|+++|+|||||||.||||++||+++............+...+++++.+|++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 239 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHC 239 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhh
Confidence 4566665443221111 122457899999999999999999999999976544433334456677899999999999
Q ss_pred HHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q 007119 310 YERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (617)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (617)
+++...+.+++.|+++++++ +++..+++.|+++++|++.++|+++..|.+......
T Consensus 240 ~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 296 (579)
T PLN03102 240 NGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL----------------------- 296 (579)
T ss_pred cchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------------
Confidence 99887777888899888877 788999999999999999999999998876311000
Q ss_pred cCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC---------
Q 007119 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--------- 459 (617)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--------- 459 (617)
....+++.+++||+++++++.++++. +|++++++||+||+++.++.....+
T Consensus 297 -------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 356 (579)
T PLN03102 297 -------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQ 356 (579)
T ss_pred -------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCccc
Confidence 00025778899999999999999876 5999999999999986443221100
Q ss_pred -----CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec
Q 007119 460 -----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (617)
Q Consensus 460 -----~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (617)
...+..+.++++ +++++.+....++.+. ...|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+
T Consensus 357 ~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~-~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~ 432 (579)
T PLN03102 357 QMELKARQGVSILGLAD--VDVKNKETQESVPRDG-KTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHP 432 (579)
T ss_pred ccccccCCCcccccccc--eEEeccccccccCCCC-CCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcC
Confidence 112334444444 4555544444443321 1379999999999999999999999999 689999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----------------HHH
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----------------QDA 595 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----------------~~~ 595 (617)
||+|+|+||+||+||+ +|++|+|.+||+++.+||.|.+++|+|.++. +.++|+|+++ ..+
T Consensus 433 dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
T PLN03102 433 DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERD 511 (579)
T ss_pred CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHH
Confidence 9999999999999996 8999999999999999999999999998764 5788988864 245
Q ss_pred HHHHHHHcCCCCChhhh
Q 007119 596 LKAWAASEGIQSLAPSD 612 (617)
Q Consensus 596 ~~~~~~~~~~~~~~~~~ 612 (617)
+.+|++++...+++|..
T Consensus 512 l~~~~~~~L~~~~~P~~ 528 (579)
T PLN03102 512 LIEYCRENLPHFMCPRK 528 (579)
T ss_pred HHHHHHhhcccccCCeE
Confidence 78889888666766654
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=538.44 Aligned_cols=474 Identities=22% Similarity=0.286 Sum_probs=374.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.+...++.++|.+.++++||++|+.+. ++. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 84 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA 84 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence 356789999999999999999999864 332 4599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++||+++|++++|+++.++.+++.+++++++++.+|++............ ......+.+...... ..+....
T Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~ 156 (534)
T PRK05852 85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--RWWPLTVNVGGDSGP------SGGTLSV 156 (534)
T ss_pred HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--cccceeeeecccccc------ccccccc
Confidence 99999999999999999999999999999999999998653321111000 001111121110000 0000000
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
.+..... ...........++|+++|+|||||||.||||+++|+++...+......+.+..+|++++.+|++|.+++..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 234 (534)
T PRK05852 157 HLDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA 234 (534)
T ss_pred ccccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence 1111100 00001111223578899999999999999999999999988887777788899999999999999999887
Q ss_pred -HHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcC
Q 007119 315 -QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (617)
Q Consensus 315 -~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (617)
.+.+++.|+++++.+ +++..+++.++++++|.++++|.++..+........
T Consensus 235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------- 289 (534)
T PRK05852 235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP------------------------- 289 (534)
T ss_pred HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence 456788899888754 678899999999999999999999998876321100
Q ss_pred CCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-----C---CCC
Q 007119 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-----D---NLS 462 (617)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----~---~~~ 462 (617)
.....+++|.+++||+++++++.+.+.+.++++++++||+||++..++..... . ...
T Consensus 290 ---------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~ 354 (534)
T PRK05852 290 ---------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST 354 (534)
T ss_pred ---------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCccccc
Confidence 00011589999999999999999999999999999999999998765543221 1 123
Q ss_pred CCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEe
Q 007119 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
+.+|. .++++++++| ++++.++.++ .|||+|+|+.+++|||++++.|++.| .+|||+|||+|++|+||++++.|
T Consensus 355 g~~g~-~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~g 428 (534)
T PRK05852 355 GLVGR-STGAQIRIVG-SDGLPLPAGA---VGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRG 428 (534)
T ss_pred ccCCC-CCCCeEEEEC-CCCCCCCCCC---ceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEe
Confidence 34444 6999999999 5566677666 89999999999999999999999998 68999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|++|+||. +|++|+|.+||+++.++|+|.+|+|+|.+++ +.++++|++ +.+++.++++++...+.+|..
T Consensus 429 R~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~ 506 (534)
T PRK05852 429 RIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPAS 506 (534)
T ss_pred cchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeE
Confidence 99999995 8999999999999999999999999998764 468888886 457889999987655665543
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=546.47 Aligned_cols=458 Identities=19% Similarity=0.231 Sum_probs=358.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecC---ccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDG---TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~ 152 (617)
++..|+.++|.++++++|+++|+.+. +. ..+.++.+||+||.+++.++|++|.+. +++||+|+|+++|+++|+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~ 106 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYV 106 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHH
Confidence 34578999999999999999999875 31 123456799999999999999999987 999999999999999999
Q ss_pred HHHHHHHhcCCeEEec-CCCCC--HHHHHHHHHhccccEEEecccchHHHHhhccCCCC--ceEEEEECCCCCCCCCCCc
Q 007119 153 IVDHACSAYSFISVPL-YDTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPI 227 (617)
Q Consensus 153 ~~~lA~~~~G~v~vpl-~~~~~--~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~iv~~~~~~~~~~~~~~ 227 (617)
++++||+++|++++|+ ++.++ ++++.+++++++++++|++....+.+.+....++. ...++.++....
T Consensus 107 ~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 179 (612)
T PRK12476 107 AGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD------- 179 (612)
T ss_pred HHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc-------
Confidence 9999999999999999 46666 78999999999999999998776655544333322 123444432110
Q ss_pred cCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc-cCCCcEEEEeCCh
Q 007119 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPL 306 (617)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~lPl 306 (617)
.... ........++|+++|+|||||||.||||++||+++++.+......+. +.+++++++++|+
T Consensus 180 --------------~~~~-~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl 244 (612)
T PRK12476 180 --------------SAGE-SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPL 244 (612)
T ss_pred --------------cccc-cccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCc
Confidence 0000 11122346789999999999999999999999999887766555566 7888999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec-----CChhhHHHHHH--hhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 007119 307 AHIYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (617)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~--~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (617)
+|.+++...+.+++.|+++++.. .++..+++.++ ++++|++..+|.++..+..... ...
T Consensus 245 ~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~--~~~------------ 310 (612)
T PRK12476 245 YHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRG--LPA------------ 310 (612)
T ss_pred ccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhc--Chh------------
Confidence 99999987666655666666554 28899999995 5899999999998887765200 000
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh---CC---ceeccccccccccccc
Q 007119 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLIS 453 (617)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~---~~---~v~~~YG~TE~~~~~~ 453 (617)
. .+ ....+++| +++||+++++++.+.+++.| |+ .+++.||+||++..++
T Consensus 311 ---------~-------~~--------~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~ 365 (612)
T PRK12476 311 ---------E-------GD--------DIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVA 365 (612)
T ss_pred ---------h-------hc--------CcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeee
Confidence 0 00 00014789 99999999999999999987 44 4899999999876544
Q ss_pred cCCCCC---------------------------CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcccccc
Q 007119 454 QLDEGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (617)
Q Consensus 454 ~~~~~~---------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~G 506 (617)
...+.. ...+++|+|+++++++|+|.+.+..++.++ .||||++|++++.|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~---~GEl~v~g~~v~~G 442 (612)
T PRK12476 366 TIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE---VGEIWLHGDNIGRG 442 (612)
T ss_pred ccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC---EEEEEEcCCccccc
Confidence 322211 113589999999999999955477777776 89999999999999
Q ss_pred ccCChhhhhcccC------------------CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc-
Q 007119 507 YYKDEIQTKEVID------------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK- 567 (617)
Q Consensus 507 Y~~~~~~t~~~~~------------------~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~- 567 (617)
||++|+.|++.|. .++||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||+++.+
T Consensus 443 Y~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~ 520 (612)
T PRK12476 443 YWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATVAEA 520 (612)
T ss_pred ccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHh
Confidence 9999999999884 13599999999985 9999999999999997 8999999999999984
Q ss_pred CCCcce--EEEEeeCCC--CeEEEEEEeC-------HHHHHHHHHHc
Q 007119 568 CKFVGQ--CFVYGDSFN--SALVAIVSVD-------QDALKAWAASE 603 (617)
Q Consensus 568 ~p~V~~--~~V~g~~~~--~~~va~vv~~-------~~~~~~~~~~~ 603 (617)
||.|.+ ++|++.+++ +.++++|++. .+++.++++++
T Consensus 521 ~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~ 567 (612)
T PRK12476 521 SPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAA 567 (612)
T ss_pred cccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHH
Confidence 899999 777887654 5788888853 35566666655
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=556.72 Aligned_cols=443 Identities=19% Similarity=0.240 Sum_probs=364.1
Q ss_pred CCHHHHHHHHHHh--cCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 79 GTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 79 ~tl~~~l~~~a~~--~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
.|+.++|.+++++ +||++|+... ..+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3789999998886 7999999642 149999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|++|.++.+++.+++++++++++|++......+... . + ...
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~---------------------~~~ 124 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-V---------------------AEA 124 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-c---------------------chh
Confidence 9999999999999999999999999999999999986543322110 0 0 001
Q ss_pred HHHHhcCc-cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh-cCcccCCCcEEEEeCChHHHHHHHH
Q 007119 237 SNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 237 ~~l~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
.++..... ..+....+..++++++|+|||||||.||||+++|++++..+.... ..+.+.++|++++.+|++|.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 204 (705)
T PRK06060 125 AELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN 204 (705)
T ss_pred hhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhH
Confidence 11111100 011112234578999999999999999999999999988776553 3467888999999999999988754
Q ss_pred -HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
.+.+++.|+++++.+ .++..+.+.++++++|+++++|.++.++.+....
T Consensus 205 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------------- 256 (705)
T PRK06060 205 SVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------------- 256 (705)
T ss_pred HHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------------
Confidence 567899999999876 6788889999999999999999999887652100
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCCCCCCCcCCCCc
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (617)
...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+..........+++|+|++
T Consensus 257 ----------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~ 320 (705)
T PRK06060 257 ----------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320 (705)
T ss_pred ----------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCC
Confidence 0014899999999999999999999988 48999999999998655443333445688999999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeec
Q 007119 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (617)
Q Consensus 471 ~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl 550 (617)
+++++|+| ++++.++.|+ .|||||+|++++.|||++|+.+. ..+|||+|||+|++++||+++|+||+||+||+
T Consensus 321 ~~~v~i~d-~~g~~~~~g~---~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~ 393 (705)
T PRK06060 321 PYEIRVVA-PDGTTAGPGV---EGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVI 393 (705)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEE
Confidence 99999999 4566666665 89999999999999999998753 36899999999999999999999999999997
Q ss_pred CCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHcCCCCChhhh
Q 007119 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 551 ~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~~~~~~~~~~~ 612 (617)
+|++|+|.|||+++.+||.|.+++|+|.++. +.++|+|++.+ .++.++++++...+++|..
T Consensus 394 -~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~ 466 (705)
T PRK06060 394 -GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHR 466 (705)
T ss_pred -CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcE
Confidence 8999999999999999999999999998754 47889998642 2577788887666776654
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-62 Score=538.22 Aligned_cols=477 Identities=24% Similarity=0.360 Sum_probs=376.5
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..++.++|.+.++++|+++|+... + +.+||.||.++++++|++|.+. |+++||+|+|+++|++||+++++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL---G------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 3599999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEEC--CCCCCCC-----------
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIG--GIDDQIP----------- 223 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~--~~~~~~~----------- 223 (617)
||+++|++++|+++.++.+++.++++++++++++++....+.+....... ....++... +......
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDKV 172 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccccccchhcccccccc
Confidence 99999999999999999999999999999999999876544443332221 111111110 0000000
Q ss_pred -C-CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc--------
Q 007119 224 -S-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-------- 293 (617)
Q Consensus 224 -~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-------- 293 (617)
. ..........+|++++..+...........++++++|+|||||||.||||++||+++...+......+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~ 252 (562)
T PRK12492 173 KKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQP 252 (562)
T ss_pred cccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccc
Confidence 0 000001122456766654432222233456789999999999999999999999999876654433221
Q ss_pred -cCC-CcEEEEeCChHHHHHHHHH-HHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcC
Q 007119 294 -FYP-SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368 (617)
Q Consensus 294 -~~~-~d~~l~~lPl~h~~~~~~~-~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~ 368 (617)
+.. .+++++.+|++|++++... +..+..|++.++.. .++..+++.++++++|++.++|.++..+.....
T Consensus 253 ~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------ 326 (562)
T PRK12492 253 LMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG------ 326 (562)
T ss_pred cccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC------
Confidence 223 3578999999999998764 45677888776654 588899999999999999999999988765200
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceecccccccc
Q 007119 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET 448 (617)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~ 448 (617)
.+....+++|.+++||+++++++.+.+++.++++++++||+||+
T Consensus 327 ------------------------------------~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 370 (562)
T PRK12492 327 ------------------------------------FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTET 370 (562)
T ss_pred ------------------------------------cccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCcccc
Confidence 00011148999999999999999999999899999999999999
Q ss_pred ccccccCCCCC-CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeec
Q 007119 449 SCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527 (617)
Q Consensus 449 ~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TG 527 (617)
+++++...... ...+++|+|+++++++|+| +++..++.++ .|||+|+|+.++.|||++|+.|++.|+.+|||+||
T Consensus 371 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG 446 (562)
T PRK12492 371 SPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGE---RGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG 446 (562)
T ss_pred CceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCC---ceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence 87665443322 3457899999999999999 5667777776 89999999999999999999999999778999999
Q ss_pred ceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHH
Q 007119 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAW 599 (617)
Q Consensus 528 Dlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~ 599 (617)
|+|++|++|+++|.||+||+||+ +|++|+|.+||+.+.+||.|.+++|+|.+++ +.+++++++ +.+++.++
T Consensus 447 D~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~ 525 (562)
T PRK12492 447 DIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAY 525 (562)
T ss_pred cEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999997 7999999999999999999999999997653 467888875 34788899
Q ss_pred HHHcCCCCChhh
Q 007119 600 AASEGIQSLAPS 611 (617)
Q Consensus 600 ~~~~~~~~~~~~ 611 (617)
++++...+.+|.
T Consensus 526 ~~~~l~~~~~P~ 537 (562)
T PRK12492 526 CKENFTGYKVPK 537 (562)
T ss_pred HHHhcccccCCc
Confidence 988766565554
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-62 Score=535.63 Aligned_cols=485 Identities=21% Similarity=0.297 Sum_probs=388.4
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc
Q 007119 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133 (617)
Q Consensus 54 ~~~~i~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~ 133 (617)
....+||+...... .+...|+.+.|.+.++++|+++|+... .+. +.+||+||.+++.++|+.|.+.
T Consensus 10 ~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~ 75 (546)
T PLN02330 10 DNEHIFRSRYPSVP-------VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSL 75 (546)
T ss_pred ccceeeccCCCCCC-------CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHh
Confidence 34457776654431 235688999999999999999999753 211 3599999999999999999999
Q ss_pred CCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEE
Q 007119 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIV 213 (617)
Q Consensus 134 Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv 213 (617)
|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++......+.... .. ++
T Consensus 76 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i 149 (546)
T PLN02330 76 GLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VI 149 (546)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EE
Confidence 9999999999999999999999999999999999999999999999999999999999988776654321 12 33
Q ss_pred EECCCCCCCCCCCccCCceEeeHHHHHhcCccCCC--CCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC
Q 007119 214 VIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ--PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291 (617)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 291 (617)
.++... ......|.+++........ +.....++++++|+|||||||.||||++||+++...+......
T Consensus 150 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~ 219 (546)
T PLN02330 150 VLGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFS 219 (546)
T ss_pred EecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhc
Confidence 333211 0112456776654322111 2233457899999999999999999999999998766532211
Q ss_pred c--ccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhc
Q 007119 292 T--KFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (617)
Q Consensus 292 ~--~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~ 367 (617)
. .....++.+..+|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|.++..+.....
T Consensus 220 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----- 294 (546)
T PLN02330 220 VGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI----- 294 (546)
T ss_pred cCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc-----
Confidence 1 1224568999999999999876 456789999998877 799999999999999999999999988765210
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceecccccc
Q 007119 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMT 446 (617)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~T 446 (617)
.....+. ..++|.+++||+++++++.+++.+.| ++++++.||+|
T Consensus 295 -----------------------------~~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~t 339 (546)
T PLN02330 295 -----------------------------VEEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLT 339 (546)
T ss_pred -----------------------------ccccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccc
Confidence 0000000 01589999999999999999999998 89999999999
Q ss_pred ccccccccCC-CC----CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC
Q 007119 447 ETSCLISQLD-EG----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (617)
Q Consensus 447 E~~~~~~~~~-~~----~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~ 521 (617)
|++++..... +. ....+++|.|+++++++|+|++++..++.|+ .|||+|+|+.++.||+++++.+++.++.+
T Consensus 340 E~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 416 (546)
T PLN02330 340 EHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT---PGELCVRSQCVMQGYYNNKEETDRTIDED 416 (546)
T ss_pred ccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC---ceEEEEecchhhhhhccCccchhhhccCC
Confidence 9876543221 11 1344689999999999999977777777776 89999999999999999999999999889
Q ss_pred CeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------
Q 007119 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------ 592 (617)
Q Consensus 522 gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------ 592 (617)
|||+|||+|++++||+++++||++|+||+ +|++|+|.+||+.+.++|.|.+++|++.++. +.++++|++.
T Consensus 417 g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 495 (546)
T PLN02330 417 GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKES 495 (546)
T ss_pred CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCC
Confidence 99999999999999999999999999997 7999999999999999999999999997643 5788888863
Q ss_pred HHHHHHHHHHcCCCCChhhh
Q 007119 593 QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~ 612 (617)
.+++.++++++...++.|..
T Consensus 496 ~~~l~~~~~~~l~~~~~p~~ 515 (546)
T PLN02330 496 EEDILNFVAANVAHYKKVRV 515 (546)
T ss_pred HHHHHHHHHHhcccccCceE
Confidence 36788999887655666653
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=539.25 Aligned_cols=449 Identities=20% Similarity=0.254 Sum_probs=352.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
-..|+.+.|.+.++++|+++|+... ++. +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus 12 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l 84 (540)
T PRK05857 12 LPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84 (540)
T ss_pred CCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence 4468999999999999999999754 442 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++.++++.+|++.........+......+. ++.++..... . . +
T Consensus 85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~---~-~ 151 (540)
T PRK05857 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVT--------R---E-S 151 (540)
T ss_pred HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeeccccc--------c---c-c
Confidence 999999999999999999999999999999999998765322211111111222 2222221100 0 0 0
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
.+.... ..........++++++++|||||||.||||++||+++.+....... .+....+++.++.+|++|.+++
T Consensus 152 ~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l 229 (540)
T PRK05857 152 EHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL 229 (540)
T ss_pred cccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH
Confidence 000000 0011123346789999999999999999999999999876543321 2345678899999999999998
Q ss_pred HHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 313 ~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
...+.+++.|+++++.+.++..+++.++++++|+++++|.++..+.......
T Consensus 230 ~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~---------------------------- 281 (540)
T PRK05857 230 WWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA---------------------------- 281 (540)
T ss_pred HHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC----------------------------
Confidence 8778889999998876688999999999999999999999998886531100
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-----CCCCCcCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (617)
....+++|.+++||++++....+++. .+++++++.||+||++.........+ ...+++|+
T Consensus 282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 346 (540)
T PRK05857 282 --------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346 (540)
T ss_pred --------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCCceeeecccccccccccccCCcCc
Confidence 00114899999999999988876554 67999999999999975433222211 24578999
Q ss_pred CCcCeEEEEeecCCCCCCCCC--CCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCC
Q 007119 468 PNAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~--~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
|++|++++|+|.++....+.+ ..++.|||+|+|++++.|||++++.|++.| .+|||+|||+|++|++|++++.||.|
T Consensus 347 ~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~ 425 (540)
T PRK05857 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSS 425 (540)
T ss_pred ccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEecccc
Confidence 999999999995433233221 112489999999999999999999999999 68999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (617)
|+||+ +|++|+|.+||+++..||+|.+++|+|.++. +.++++|+++
T Consensus 426 ~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~ 474 (540)
T PRK05857 426 EMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVAS 474 (540)
T ss_pred ccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeC
Confidence 99996 8999999999999999999999999998754 3566666653
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=530.50 Aligned_cols=454 Identities=24% Similarity=0.315 Sum_probs=377.1
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..+.+.|.+.++++||++|+.+. + +.+||+||.++++++|++|.+ .|+++|++|+++++|+++|+++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46789999999999999999752 2 459999999999999999986 7999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++|+++.++++++.++++.+++++++++....+.+.+..... ....++.+. +++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~~~ 133 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISIT------------------SLK 133 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEec------------------chH
Confidence 9999999999999999999999999999999999987666554443221 122233222 222
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH-H
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-V 316 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~-~ 316 (617)
++.... ........++++++|+|||||||.||+|+++|+++..........+.+..+|++++.+|++|.+++... +
T Consensus 134 ~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 210 (496)
T PRK06839 134 EIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF 210 (496)
T ss_pred hhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence 332221 112234567899999999999999999999999998766655556778899999999999999998764 5
Q ss_pred HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.++..|+++++.+ .++..+++.++++++|++.++|.+++.+......
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------- 258 (496)
T PRK06839 211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF-------------------------------- 258 (496)
T ss_pred HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc--------------------------------
Confidence 6899999998876 7999999999999999999999999988662100
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCCCcCeE
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACE 473 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~ 473 (617)
......++|.+++||+++++++.+.++.. |+++.+.||+||++..++..... ....+++|+|+++++
T Consensus 259 ----------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 327 (496)
T PRK06839 259 ----------ETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD 327 (496)
T ss_pred ----------ccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence 00011489999999999999999999987 99999999999998655433322 245789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCe
Q 007119 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553 (617)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G 553 (617)
++|+| +++..++.|+ .|||+|+|+.++.||+++++.++..+ .+|||+|||+|++|++|++++.||.+|+||. +|
T Consensus 328 ~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G 401 (496)
T PRK06839 328 YELID-ENKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GG 401 (496)
T ss_pred EEEEC-CCcCCCCCCC---ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEE-CC
Confidence 99999 4445567676 89999999999999999999999888 7899999999999999999999999999995 89
Q ss_pred eeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 554 EYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 554 ~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
++|+|.+||+.+.++|+|.+++|+|.++. +.++++|+++ .++++++++++..++++|..
T Consensus 402 ~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 469 (496)
T PRK06839 402 ENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKE 469 (496)
T ss_pred EEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcE
Confidence 99999999999999999999999998754 4788999874 36788999887665666643
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=536.09 Aligned_cols=476 Identities=26% Similarity=0.350 Sum_probs=383.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|+++++++||++|+.+. +. .+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~~---~~------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~ 102 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDFF---GA------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAV 102 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 48999999999999999999864 32 4899999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCC---------------
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP--------------- 223 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~--------------- 223 (617)
+++|++++|+++.++.+++.+++++++++++|++......+.++.... ..+.++.++.......
T Consensus 103 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (573)
T PRK05605 103 LRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALRK 181 (573)
T ss_pred HhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccccccccccccccccc
Confidence 999999999999999999999999999999999887666555443322 2334444432110000
Q ss_pred --CCCccCCceEeeHHHHHhcCccC---CCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCc-cc-CC
Q 007119 224 --SLPITTGVQILTYSNLLSQGRSN---LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-KF-YP 296 (617)
Q Consensus 224 --~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~-~~ 296 (617)
...........+|+++....... ........++++++++|||||||.||+|++||+++...+....... .+ ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 261 (573)
T PRK05605 182 ARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG 261 (573)
T ss_pred cccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCC
Confidence 00001122345677765542211 0122335678999999999999999999999999988766443322 22 34
Q ss_pred CcEEEEeCChHHHHHHHHH-HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHH
Q 007119 297 SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (617)
Q Consensus 297 ~d~~l~~lPl~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~ 374 (617)
++++++.+|++|.+++... +.+++.|+++++.+ .++..+++.++++++|++.++|.+++.+.+.....
T Consensus 262 ~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------- 331 (573)
T PRK05605 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER---------- 331 (573)
T ss_pred CcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc----------
Confidence 7899999999999998764 45789999998877 79999999999999999999999999887631100
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceecccccccccccccc
Q 007119 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 454 (617)
+ ...+++|.+++||+++++++.+.+.+.+++++++.||+||++++++.
T Consensus 332 ---------------~-----------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 379 (573)
T PRK05605 332 ---------------G-----------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVG 379 (573)
T ss_pred ---------------C-----------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhc
Confidence 0 00147999999999999999999999889999999999999876665
Q ss_pred CCCC-CCCCCCcCCCCcCeEEEEeecCC-CCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEE
Q 007119 455 LDEG-DNLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532 (617)
Q Consensus 455 ~~~~-~~~~~~vG~p~~~~~v~ivd~~~-~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~ 532 (617)
.... ....+++|.|+++++++|+|.++ +..++.+. .|||+++|+.++.||+++++.|.+.| .+|||+|||+|++
T Consensus 380 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~ 455 (573)
T PRK05605 380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE---EGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVM 455 (573)
T ss_pred CCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC---eeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEE
Confidence 4332 24568999999999999999665 45555665 89999999999999999999999999 5789999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007119 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (617)
Q Consensus 533 ~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~ 603 (617)
|++|+++++||+||+||. +|++|+|.+||+++..|+.|.+++|+|.++. +.++++|++ +.+++.++++++
T Consensus 456 ~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~ 534 (573)
T PRK05605 456 EEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH 534 (573)
T ss_pred cCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 999999999999999996 8999999999999999999999999997643 578888875 457788898887
Q ss_pred CCCCChhh
Q 007119 604 GIQSLAPS 611 (617)
Q Consensus 604 ~~~~~~~~ 611 (617)
...+++|.
T Consensus 535 l~~~~~p~ 542 (573)
T PRK05605 535 LTRYKVPR 542 (573)
T ss_pred CccccCCc
Confidence 55555543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=529.54 Aligned_cols=474 Identities=22% Similarity=0.311 Sum_probs=383.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.++|+..++++|+..++.++ ..++++.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999888654 1123567999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++++++.++++.+++++++++....+.+.+....++.++.++....... .. ...+.+.++++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 159 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAH-LP----AGSTPLLCYET 159 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCc-cc----cCCcccccHHH
Confidence 99999999999999999999999999999999998877766666555666666666544221 00 11234567887
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHH--hhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~--~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+....... .......++++++++|||||||.||||++||++++.... .....+++..+|++++.+|++|.+++...+
T Consensus 160 l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (539)
T PRK07008 160 LVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY 238 (539)
T ss_pred HhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHH
Confidence 76543221 122345678999999999999999999999999875432 233457788899999999999988877667
Q ss_pred HHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 317 ~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+.....
T Consensus 239 ~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------------ 288 (539)
T PRK07008 239 SAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------------ 288 (539)
T ss_pred HHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------------
Confidence 7899999999875 68999999999999999999999999887532110
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--------C---CCCC
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------D---NLSG 463 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--------~---~~~~ 463 (617)
....+++|.+++||+++++++.+.+.+.+++++++.||+||++..++..... + ....
T Consensus 289 ------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (539)
T PRK07008 289 ------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE 356 (539)
T ss_pred ------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence 0011489999999999999999999999999999999999998654433211 0 1246
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|.|+|+++++|+| +++..++.+.. ..|||+++|+.++.||+++++ +.+ .+|||+|||+|++|+||+++++||
T Consensus 357 ~~G~p~pg~~~~i~d-~~~~~~~~~~~-~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR 430 (539)
T PRK07008 357 KQGRVIYGVDMKIVG-DDGRELPWDGK-AFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDR 430 (539)
T ss_pred cCCccccceEEEEEC-CCCCccCCCCC-cceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeec
Confidence 799999999999999 45555543321 269999999999999999984 344 479999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~~ 612 (617)
++|+||. +|++|+|.+||+.+..+|.|.+++|+|.++. +.++++|+. +++++.++++++..++.+|..
T Consensus 431 ~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 507 (539)
T PRK07008 431 SKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDD 507 (539)
T ss_pred ccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeE
Confidence 9999995 8999999999999999999999999998753 467777764 346789999987655665543
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=528.56 Aligned_cols=468 Identities=22% Similarity=0.312 Sum_probs=390.8
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
++.++|...++++|+++|+.+. + +.+||+||.+++.++|++|.+.|+.+|++|+|+++|+++|+++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4788999999999999999764 3 259999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHH
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (617)
++|++++|+++.++.+++..++++++++++|++....+.+......++.+..++.++...... ........|+++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 146 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-----EGGGESPSWPKL 146 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-----CCccccccHHHh
Confidence 999999999999999999999999999999999877776666555556666677666432111 112234567776
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHH
Q 007119 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (617)
Q Consensus 240 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l 319 (617)
...... ....+...+++++|+|||||||.||||++||+++...+......+.+..+|++++.+|++|.+++...+.++
T Consensus 147 ~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 224 (515)
T TIGR03098 147 LALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF 224 (515)
T ss_pred hccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence 543322 122334568999999999999999999999999998888777777888999999999999999998888899
Q ss_pred HhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 007119 320 YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (617)
Q Consensus 320 ~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d 398 (617)
..|+++++.+ .++..+++.++++++|++.++|+++..+.....
T Consensus 225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------------ 268 (515)
T TIGR03098 225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW------------------------------------ 268 (515)
T ss_pred HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc------------------------------------
Confidence 9999999887 789999999999999999999999988754100
Q ss_pred HHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCC-CCCCCCCcCCCCcCeEEEE
Q 007119 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKL 476 (617)
Q Consensus 399 ~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~v~i 476 (617)
+.....++|.+++||+++++++.+.+++.+ ++.+++.||+||++..+..... .....+++|+|+++++++|
T Consensus 269 -------~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 341 (515)
T TIGR03098 269 -------PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV 341 (515)
T ss_pred -------CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEE
Confidence 000114899999999999999999999988 6889999999998765443221 1346789999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC-----------CCeeeecceEEEecCCcEEEEecCC
Q 007119 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-----------DGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-----------~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
+| +++..++.++ .|||+++|+.++.|||++++.|++.|.. ++||+|||+|++|+||++++.||.|
T Consensus 342 ~~-~~~~~~~~~~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~ 417 (515)
T TIGR03098 342 LR-EDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD 417 (515)
T ss_pred EC-CCCCCCCCCC---ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccc
Confidence 99 5566666665 8999999999999999999999877643 3489999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhh
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~ 611 (617)
|+||+ +|++|+|++||+++.++|.|.+++|+|.++. +.+++++++ +.+.+.++++++..++++|.
T Consensus 418 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 491 (515)
T TIGR03098 418 EMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPA 491 (515)
T ss_pred cceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCC
Confidence 99996 8999999999999999999999999997643 577888874 34678899988765565554
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=525.83 Aligned_cols=446 Identities=19% Similarity=0.241 Sum_probs=370.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
+++.+.|+++++++||++|+.+. + ..+||.||.+++.++|++|.+.|. +|++|+|+++|+++|+++++||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 36889999999999999999753 3 359999999999999999999984 8999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++++++.++++.++++.++++......+... ...++.++. +.+
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~------------------~~~ 126 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE------------------WKR 126 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh------------------hhh
Confidence 99999999999999999999999999999999987654433211 011222211 111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
........ ........+++++|+|||||||.||||+++|++++..+......+.+.++|+++...|++|.+++...+.+
T Consensus 127 ~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~ 205 (487)
T PRK07638 127 MIEKYLPT-YAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST 205 (487)
T ss_pred hhhhcccc-ccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence 11111110 11112235678999999999999999999999999888877777888999999999999999887777889
Q ss_pred HHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
++.|+++++.+ +++..+++.++++++|+++++|+++..+.+.-
T Consensus 206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------------ 249 (487)
T PRK07638 206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN------------------------------------ 249 (487)
T ss_pred HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc------------------------------------
Confidence 99999999887 79999999999999999999999998886520
Q ss_pred hHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEE
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIK 475 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ 475 (617)
....+.+.+++||++++.++.+++++.+ ++++++.||+||++.++...... ....+++|.|+++++++
T Consensus 250 ----------~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 319 (487)
T PRK07638 250 ----------RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR 319 (487)
T ss_pred ----------CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence 0012455677889999999999999988 68899999999998766544322 24567999999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeee
Q 007119 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (617)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~ 555 (617)
|+| +++..++.|+ .|||+|+|+.++.|||++++.+.+.+ .+|||+|||+|++|+||+++++||++|+||+ +|++
T Consensus 320 i~d-~~g~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~ 393 (487)
T PRK07638 320 ICN-EAGEEVQKGE---IGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGIN 393 (487)
T ss_pred EEC-CCCCCCCCCC---CeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEE
Confidence 999 5667777665 89999999999999999999888766 7899999999999999999999999999996 8999
Q ss_pred echHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe--CHHHHHHHHHHcCCCCChhh
Q 007119 556 IAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV--DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 556 i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~--~~~~~~~~~~~~~~~~~~~~ 611 (617)
|+|.+||+++.++|+|.+++|+|.++. +.++++|+. +.+++.++++++...+++|.
T Consensus 394 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~~l~~~~~p~ 454 (487)
T PRK07638 394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIPK 454 (487)
T ss_pred ECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHHHhhcccCCc
Confidence 999999999999999999999998754 567787764 56788899988765565554
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=530.57 Aligned_cols=465 Identities=23% Similarity=0.300 Sum_probs=381.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|...++++||++|+.+. + +.+||+||.+++.++|..|.+.|+++|++|+|+++|+++++++++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 75 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF 75 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4568999999999999999999753 3 348999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++.++++.++++....+.+.......+....++.++... ...++
T Consensus 76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 143 (528)
T PRK07470 76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR------------AGLDY 143 (528)
T ss_pred HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc------------ccccH
Confidence 999999999999999999999999999999999999876655554443344455566554321 12356
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
+++...............++++++|+|||||||.||||+++|+++...+...... .....+|+++.++|++|.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 223 (528)
T PRK07470 144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ 223 (528)
T ss_pred HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence 6665443222223334567899999999999999999999999997655432221 24678899999999999999865
Q ss_pred HHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 315 QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
. ..++.|++.++++ .++..+++.|+++++|++.++|.+++.+.+...
T Consensus 224 ~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 273 (528)
T PRK07470 224 L-CQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA----------------------------- 273 (528)
T ss_pred H-HHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC-----------------------------
Confidence 4 4577788777664 688999999999999999999999988755210
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--------CCCCC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------DNLSG 463 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--------~~~~~ 463 (617)
......+++|.+++||++++++..+++...+|.++++.||+||+++.++..... ....+
T Consensus 274 -------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 340 (528)
T PRK07470 274 -------------VDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG 340 (528)
T ss_pred -------------cCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceee
Confidence 000112589999999999999999999888899999999999998765543221 23457
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|.|+++++++++| +++..++.++ .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||++++.||
T Consensus 341 ~~G~~~~g~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR 415 (528)
T PRK07470 341 TCGFERTGMEVQIQD-DEGRELPPGE---TGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415 (528)
T ss_pred ccCcccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCC
Confidence 899999999999999 5667777775 89999999999999999999999988 789999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+||+ +|++|+|.+||+.+.++|.|.+++|+|.++. +.+++++++ +++.+.++++++..++.+|.
T Consensus 416 ~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~ 491 (528)
T PRK07470 416 ASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPK 491 (528)
T ss_pred ccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCc
Confidence 9999996 8999999999999999999999999998754 367788874 45678888888765555554
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=525.01 Aligned_cols=446 Identities=26% Similarity=0.353 Sum_probs=375.5
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
+.|+.+.|++.+.++||++|+.+. + +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++|+++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999754 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++|+++.++.+++.++++.++++.++++......+.... ...++
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------------------------~~~~~ 122 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------------------SVKFA 122 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------------------------cccHH
Confidence 9999999999999999999999999999999999876544332210 01234
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
++...............++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|++++...+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 202 (483)
T PRK03640 123 ELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMR 202 (483)
T ss_pred HHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHH
Confidence 44332211112223346789999999999999999999999999887776666678899999999999999999887788
Q ss_pred HHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCch
Q 007119 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (617)
Q Consensus 318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (617)
++..|+++++.+ .++..+++.++++++|++.++|+++..+.......
T Consensus 203 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------------- 250 (483)
T PRK03640 203 SVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------------- 250 (483)
T ss_pred HHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------------
Confidence 899999999988 79999999999999999999999999886521100
Q ss_pred hhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCCCcCeEE
Q 007119 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEI 474 (617)
Q Consensus 397 ~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v 474 (617)
....++|.+++||+++++.+.++++.. ++++++.||+||++..++...+. ....+++|+|++++++
T Consensus 251 -----------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~ 318 (483)
T PRK03640 251 -----------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCEL 318 (483)
T ss_pred -----------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEE
Confidence 011489999999999999999998874 99999999999987644433332 2456899999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCee
Q 007119 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGE 554 (617)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~ 554 (617)
++++ ++ ..++.+. .|||+|+|++++.||+++++.+++.| .+|||+|||++++++||+++++||+||++|. +|+
T Consensus 319 ~i~~-~~-~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~ 391 (483)
T PRK03640 319 KIEK-DG-VVVPPFE---EGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGE 391 (483)
T ss_pred EEec-CC-CcCCCCC---ceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEe-CCE
Confidence 9998 33 5556665 89999999999999999999999998 7899999999999999999999999999996 899
Q ss_pred eechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 555 YIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 555 ~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+|+|.+||+.+.++|+|.+++|++.+++ ..+++++++ +.+++.++++++...+.+|..
T Consensus 392 ~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 456 (483)
T PRK03640 392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVPKR 456 (483)
T ss_pred EECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHhccCCCCCcE
Confidence 9999999999999999999999997653 467777775 457888999887655666653
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=590.80 Aligned_cols=458 Identities=16% Similarity=0.167 Sum_probs=360.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.++|.++++++||++|+.+...........+.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 58999999999999999999864100000123457999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---hHHHHhhccC----CCCceEEEEECCCCCCCCCCCccCCc
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---LNSLLSCLSE----VPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---~~~l~~~~~~----~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
+++|+++||++|.++++++.++++++++++++++... ...+...... ...+..+...+... ... ...
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~ 389 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS--LVG----GSL 389 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc--ccc----ccc
Confidence 9999999999999999999999999999999987542 1111111110 00111111111100 000 000
Q ss_pred eEeeHHHHHhcCc--cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 007119 232 QILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 232 ~~~~~~~l~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (617)
. ....+...... ..........++|+++|+|||||||.||||+++|+++++.+.+....+++.++|+++...|++|.
T Consensus 390 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 468 (1389)
T TIGR03443 390 E-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHD 468 (1389)
T ss_pred c-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceec
Confidence 0 00000100000 00111223468999999999999999999999999999998888778889999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 310 YERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
.++...+.+|+.|+++++.+ .++..+++.|+++++|++.++|++++.+.....
T Consensus 469 ~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------- 525 (1389)
T TIGR03443 469 PIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT----------------------- 525 (1389)
T ss_pred chHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc-----------------------
Confidence 98888889999999999876 368899999999999999999999987754100
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC-----
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----- 459 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----- 459 (617)
....+||.+++||+++++.+.+.+...+ +++++|+||+||++..++......
T Consensus 526 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 583 (1389)
T TIGR03443 526 ----------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDS 583 (1389)
T ss_pred ----------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEcccccccc
Confidence 0014899999999999999999888765 789999999999986555432111
Q ss_pred ------CCCCCcCCCCcCeEEEEeecCC-CCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC-------------
Q 007119 460 ------NLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------- 519 (617)
Q Consensus 460 ------~~~~~vG~p~~~~~v~ivd~~~-~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------------- 519 (617)
....++|+|+++++++|+|.++ ...++.|. .|||||+|+++++||+|+|+.|+++|.
T Consensus 584 ~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~---~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~ 660 (1389)
T TIGR03443 584 TFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE---VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDL 660 (1389)
T ss_pred chhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC---ceEEEecccccchhcCCChhHhhhhccCCcccCccccccc
Confidence 1246799999999999999544 35566676 899999999999999999999999883
Q ss_pred ---------------CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--
Q 007119 520 ---------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN-- 582 (617)
Q Consensus 520 ---------------~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~-- 582 (617)
.++||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++.+++
T Consensus 661 ~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~ 739 (1389)
T TIGR03443 661 DKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDE 739 (1389)
T ss_pred ccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCC
Confidence 2589999999999999999999999999997 9999999999999999999999998876533
Q ss_pred -CeEEEEEEeC
Q 007119 583 -SALVAIVSVD 592 (617)
Q Consensus 583 -~~~va~vv~~ 592 (617)
+.++|+|+++
T Consensus 740 ~~~lva~vv~~ 750 (1389)
T TIGR03443 740 EPTLVSYIVPQ 750 (1389)
T ss_pred CeEEEEEEecc
Confidence 5799999975
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=529.40 Aligned_cols=466 Identities=26% Similarity=0.333 Sum_probs=390.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
.-+|+.+.+.+.++.+|+++|+.+. +. .+||.||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~~------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL---GN------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999864 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++++++++++++......+.......+.++.++.+++... ....++
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 155 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD----------DSVLGY 155 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc----------ccccCH
Confidence 9999999999999999999999999999999999998776666554444556666766653210 123466
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCccc-CCCcEEEEeCChHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF-YPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~lPl~h~~~~~~~ 315 (617)
+++....... .+......+++++++|||||||.||||++||+++...+......+++ ..++++++.+|++|.+++...
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 234 (542)
T PRK07786 156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM 234 (542)
T ss_pred HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence 7765443221 12233456789999999999999999999999999887766665665 678999999999999999878
Q ss_pred HHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
+.++..|+++++.+ .++..+++.++++++|.++++|.++..+.......
T Consensus 235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---------------------------- 286 (542)
T PRK07786 235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR---------------------------- 286 (542)
T ss_pred HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------------
Confidence 88999999999865 68999999999999999999999999886531100
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC--CCCCCcCCCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (617)
. ...++|.+++||+++++++.+.+++.+ ++++++.||+||++.+.+.....+ ...+++|.|+
T Consensus 287 ---~------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 351 (542)
T PRK07786 287 ---P------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI 351 (542)
T ss_pred ---c------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccC
Confidence 0 002699999999999999999999988 789999999999987655433222 3567899999
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
++++++|+| +++..++.+. .|||+++|+.++.||+++++.|++.| .+|||+|||++++++||.++++||.||+||
T Consensus 352 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~ 426 (542)
T PRK07786 352 PTVAARVVD-ENMNDVPVGE---VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMII 426 (542)
T ss_pred CCceEEEEC-CCCCCCcCCC---ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEE
Confidence 999999999 6667777665 89999999999999999999999999 689999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-------HHHHHHHHHHcCCCCChhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~~~~~~~~~~~~~~~~~ 611 (617)
+ +|++|+|.+||+++.++|.|.+++|+|.+++ +.++++|+++ .+++.++++++...+..|.
T Consensus 427 ~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 497 (542)
T PRK07786 427 S-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPK 497 (542)
T ss_pred e-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCC
Confidence 6 8999999999999999999999999997653 5678888754 3567888887655455443
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-61 Score=528.22 Aligned_cols=468 Identities=21% Similarity=0.286 Sum_probs=382.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..|+.++|++.++++||++|+... ++ +.+||+||.+++.++|++|++.|+++||+|+++++|+++|+++++|
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA 93 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA 93 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 358999999999999999999753 32 3589999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc-----hHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
|+++|++++|+++.++.+++.++++.+++++++++... .+.+......++.++.++.++...... .
T Consensus 94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 164 (547)
T PRK06087 94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPAT---------S 164 (547)
T ss_pred HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCc---------C
Confidence 99999999999999999999999999999999997532 233444444555666677665432110 1
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
..++.++....... .......++|+++|+|||||||.||+|++||++++.........+.+.++|++++.+|++|.+++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 243 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGF 243 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHH
Confidence 23455555432221 12233567899999999999999999999999999888777777788999999999999999998
Q ss_pred HH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcC
Q 007119 313 AN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (617)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (617)
.. .+.+++.|+++++.+ .++..+++.++++++|+++++|..+..++......
T Consensus 244 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-------------------------- 297 (547)
T PRK06087 244 LHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-------------------------- 297 (547)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC--------------------------
Confidence 76 456789999999887 79999999999999999998887776665421100
Q ss_pred CCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCC
Q 007119 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSP 468 (617)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p 468 (617)
....+++|.+++||+++++++.+.+... ++++++.||+||+++..+..... ....+++|.|
T Consensus 298 ----------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~ 360 (547)
T PRK06087 298 ----------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYA 360 (547)
T ss_pred ----------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCcc
Confidence 0011489999999999999999988875 99999999999998766543322 1335678999
Q ss_pred CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCee
Q 007119 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (617)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~i 548 (617)
+++++++++| +++..++.+. .|||+++|+.++.||+++++.+...|+.+|||+|||+|++|++|+++++||.+|+|
T Consensus 361 ~~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i 436 (547)
T PRK06087 361 AAGVEIKVVD-EARKTLPPGC---EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII 436 (547)
T ss_pred CCCceEEEEc-CCCCCCcCCC---cceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhh
Confidence 9999999999 6666677665 89999999999999999999999999889999999999999999999999999999
Q ss_pred ecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHcC-CCCChhh
Q 007119 549 KLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASEG-IQSLAPS 611 (617)
Q Consensus 549 kl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~~~~~~~~~~-~~~~~~~ 611 (617)
+. +|++|+|.+||+++.++|+|.+++|+|.+++ +.++++|++++ +++.+++.++. ..+++|.
T Consensus 437 ~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ 509 (547)
T PRK06087 437 VR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPE 509 (547)
T ss_pred hc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCe
Confidence 95 8999999999999999999999999997654 47888888643 56667765433 3344443
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-61 Score=528.91 Aligned_cols=473 Identities=25% Similarity=0.344 Sum_probs=387.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.++|.+.++++||++|+.+. ++. +.+||+||.+++.++|..|.+.|+++||+|+|+++|+++|+++++
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 86 (559)
T PRK08315 14 LEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQF 86 (559)
T ss_pred hhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3458999999999999999999875 332 458999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccC-------------CCCceEEEEECCC
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSE-------------VPTVRLIVVIGGI 218 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~-------------~~~~~~iv~~~~~ 218 (617)
||+++|++++|+++.++.+++..+++.+++++++++.... ..+.+.... .+..+.++.++..
T Consensus 87 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (559)
T PRK08315 87 ATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE 166 (559)
T ss_pred HHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc
Confidence 9999999999999999999999999999999999986532 112221111 1334445544431
Q ss_pred CCCCCCCCccCCceEeeHHHHHhcCccC-----CCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc
Q 007119 219 DDQIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293 (617)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~ 293 (617)
. ......+.++....... ........++++++++|||||||.||||.+||++++..+......+.
T Consensus 167 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~ 236 (559)
T PRK08315 167 K----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMK 236 (559)
T ss_pred C----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcC
Confidence 1 11234566665433111 01122345788999999999999999999999999988887777788
Q ss_pred cCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCc
Q 007119 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (617)
Q Consensus 294 ~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~ 370 (617)
+.++|+++..+|++|.+++.. .+.++..|+++++.. .++..+++.++++++|++.++|.++..+......
T Consensus 237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~------- 309 (559)
T PRK08315 237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF------- 309 (559)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-------
Confidence 999999999999999999876 456899999998654 7899999999999999999999999876542100
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCc-eeccccccccc
Q 007119 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETS 449 (617)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-v~~~YG~TE~~ 449 (617)
+....+++|.+++||++++.++.+.+.+.++.. +++.||+||++
T Consensus 310 -----------------------------------~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~ 354 (559)
T PRK08315 310 -----------------------------------ARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETS 354 (559)
T ss_pred -----------------------------------CCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccc
Confidence 000114899999999999999999999988754 99999999998
Q ss_pred cccccCCCCC---CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeee
Q 007119 450 CLISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (617)
Q Consensus 450 ~~~~~~~~~~---~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~T 526 (617)
.+++.....+ ....++|.|+++++++|+|.+++..++.++ .|||+|+|++++.|||++|+.+++.|+.++||+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 431 (559)
T PRK08315 355 PVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE---QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHT 431 (559)
T ss_pred cceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC---ceEEEEECchhhhhhcCChhHHhhcCCCCCCEEc
Confidence 7665443222 356799999999999999966577777776 8999999999999999999999999988999999
Q ss_pred cceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHH
Q 007119 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALK 597 (617)
Q Consensus 527 GDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~ 597 (617)
||+|++|+||.++++||.+|+||+ +|++|+|.+||+.+.++|+|.+++|++.++. +.++++|++ +.+.+.
T Consensus 432 GD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 510 (559)
T PRK08315 432 GDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVR 510 (559)
T ss_pred cceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHH
Confidence 999999999999999999999996 8999999999999999999999999998754 467788875 457888
Q ss_pred HHHHHcCCCCChhhh
Q 007119 598 AWAASEGIQSLAPSD 612 (617)
Q Consensus 598 ~~~~~~~~~~~~~~~ 612 (617)
++++++...+.+|..
T Consensus 511 ~~l~~~l~~~~~P~~ 525 (559)
T PRK08315 511 DFCRGKIAHYKIPRY 525 (559)
T ss_pred HHHHhhcccccCCcE
Confidence 999887655666653
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=521.38 Aligned_cols=461 Identities=26% Similarity=0.350 Sum_probs=383.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.+++..++ .+|+++|+... ++ +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~ 73 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT 73 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58899999999 99999999753 33 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++.+++.++++.+++++++++......+....... ....++.++.... ..+.+
T Consensus 74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~ 139 (504)
T PRK07514 74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT-------------GSLLE 139 (504)
T ss_pred HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc-------------ccHHH
Confidence 999999999999999999999999999999999988776665544332 2233444443211 11222
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVM 317 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~ 317 (617)
....... ........++++++|+|||||||.||+|++||+++...+......+.+.++|++++.+|++|.+++.. .+.
T Consensus 140 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 218 (504)
T PRK07514 140 AAAAAPD-DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV 218 (504)
T ss_pred hhhhcCc-ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence 2111111 11223456889999999999999999999999999998877776778889999999999999999876 456
Q ss_pred HHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCch
Q 007119 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (617)
Q Consensus 318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (617)
+++.|+++++.+ .++..+++.+ .++|++.++|.++.++.....
T Consensus 219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------------- 262 (504)
T PRK07514 219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------------- 262 (504)
T ss_pred HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------------
Confidence 899999999887 6899999988 479999999999988765200
Q ss_pred hhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEE
Q 007119 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476 (617)
Q Consensus 397 ~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i 476 (617)
......+++|.+++||+++++++.+.+++.+++++++.||+||++..++.........+++|.|+++++++|
T Consensus 263 --------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i 334 (504)
T PRK07514 263 --------LTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRV 334 (504)
T ss_pred --------CCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEE
Confidence 000112489999999999999999999999999999999999998655443333345678999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeee
Q 007119 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (617)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i 556 (617)
+|++++..++.++ .|||+|+|++++.||+++++.+++.|..+|||+|||+|+++++|+++++||+||+||+ +|++|
T Consensus 335 ~d~~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i 410 (504)
T PRK07514 335 TDPETGAELPPGE---IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNV 410 (504)
T ss_pred EECCCCCCCCCCC---ceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe-CCeEE
Confidence 9977777777776 8999999999999999999999999988999999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhh
Q 007119 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~ 611 (617)
+|.+||+.+.++++|.+++|+|.+++ +.+++++++ +.+++.++++++..++++|.
T Consensus 411 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 474 (504)
T PRK07514 411 YPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPK 474 (504)
T ss_pred CHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCc
Confidence 99999999999999999999997753 468888886 34678888888755565554
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=524.52 Aligned_cols=474 Identities=19% Similarity=0.246 Sum_probs=379.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.+...++.++|.+.++++|+++|+... + +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~ 76 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL 76 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHH
Confidence 345568999999999999999999742 2 3499999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccC-CCCceEEEEECCCCCCCCCCCcc
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPIT 228 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~-~~~~~~iv~~~~~~~~~~~~~~~ 228 (617)
++||+++|++++|+++..+.+++.+++++++++++|++.+.. +.+...... .+.++.++.++.........
T Consensus 77 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (540)
T PRK06164 77 FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAP--- 153 (540)
T ss_pred HHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCC---
Confidence 999999999999999999999999999999999999986642 222222211 23455555554211111000
Q ss_pred CCceEeeHHHHHhcCccCCC---CCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCC
Q 007119 229 TGVQILTYSNLLSQGRSNLQ---PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305 (617)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lP 305 (617)
....+.++......... ......++++++++|||||||.||||++||+++...+......+++.+++++++++|
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p 230 (540)
T PRK06164 154 ---APGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALP 230 (540)
T ss_pred ---CcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 00011111111000000 012234689999999999999999999999999998888777788899999999999
Q ss_pred hHHHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 306 LAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 306 l~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
++|.+++...+.++..|+++++.+ +++..+++.|+++++|+++++|.++..+.+... .
T Consensus 231 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~----~----------------- 289 (540)
T PRK06164 231 FCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG----E----------------- 289 (540)
T ss_pred chhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc----c-----------------
Confidence 999999988888999999999877 789999999999999999999999998876300 0
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcC-CCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC---C
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA-SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---N 460 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gg-a~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~ 460 (617)
....+++|.+..+| ++.+.++.+++... ++++++.||+||+++.++...... .
T Consensus 290 ----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 346 (540)
T PRK06164 290 ----------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSV 346 (540)
T ss_pred ----------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcc
Confidence 00114788776665 66777787877765 899999999999987665543322 2
Q ss_pred CCCCcCCCC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEE
Q 007119 461 LSGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (617)
Q Consensus 461 ~~~~vG~p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (617)
....+|.|+ ++++++|+|++++..++.++ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|++|+++
T Consensus 347 ~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~ 423 (540)
T PRK06164 347 RIEGGGRPASPEARVRARDPQDGALLPDGE---SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFV 423 (540)
T ss_pred eeccCccccCCCeEEEEecCCCCcCCCCCC---eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEE
Confidence 334678875 89999999987778777776 89999999999999999999999999889999999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+.||.||+||+ +|++|+|++||+.+.++|+|.+++|+|.+. ...++++|+++ .+++.++++++..++++|.
T Consensus 424 ~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~ 502 (540)
T PRK06164 424 YQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPA 502 (540)
T ss_pred EEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCc
Confidence 99999999997 899999999999999999999999999753 34788888863 4678899998765566664
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=522.85 Aligned_cols=470 Identities=26% Similarity=0.358 Sum_probs=388.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.+.++++||++|+.+. + +.+||+||.+++.++|..|.+.|+++||+|+++++|+++|+++++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~ 79 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999864 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++.+++++++++.+....+.+....... ..+....... .......+..+
T Consensus 80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~ 152 (523)
T PRK08316 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG------GREAPGGWLDF 152 (523)
T ss_pred HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc------ccccccchhhH
Confidence 9999999999999999999999999999999999998877776655433321 1111111100 00111234556
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+++....... ........+++++|+|||||||.||+|.+||++++.........+.+.++|++++.+|++|.+++...+
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 231 (523)
T PRK08316 153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL 231 (523)
T ss_pred HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence 6555433221 123446678999999999999999999999999998877776677889999999999999999987644
Q ss_pred -HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 317 -MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 317 -~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+...
T Consensus 232 ~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 279 (523)
T PRK08316 232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD-------------------------------- 279 (523)
T ss_pred HHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--------------------------------
Confidence 5688999999986 799999999999999999999999988765210
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC--CCCCCcCCCCcC
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAA 471 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~ 471 (617)
.+.....++|.+++||++++.++.+.+++.+ ++++++.||+||++.+++...+.+ ...+++|+|+++
T Consensus 280 ----------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~ 349 (523)
T PRK08316 280 ----------FDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLN 349 (523)
T ss_pred ----------cccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCC
Confidence 0001114899999999999999999999988 789999999999987766544332 456899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecC
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~ 551 (617)
++++|+| +++..++.+. .|||+++|++++.||+++++.+++.| .+|||+|||+|++++||.++++||+||+||+
T Consensus 350 ~~~~i~~-~~~~~~~~g~---~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~- 423 (523)
T PRK08316 350 VETRVVD-DDGNDVAPGE---VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKT- 423 (523)
T ss_pred cEEEEEc-CCCCCCCCCC---cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEe-
Confidence 9999999 5566667665 89999999999999999999999999 7999999999999999999999999999996
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 552 ~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+|++|+|++||+.+.++|+|.+++|+|.++. +.++++++++ ++.+.++++++...+++|.
T Consensus 424 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 492 (523)
T PRK08316 424 GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPK 492 (523)
T ss_pred CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCc
Confidence 8999999999999999999999999997654 4688888864 4677888887655555554
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=526.38 Aligned_cols=469 Identities=25% Similarity=0.351 Sum_probs=381.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|.+.++++|+++|+++. ++. +.+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~ 90 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT 90 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 58999999999999999999875 332 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhcc-------------CCCCceEEEEECCCCC
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLS-------------EVPTVRLIVVIGGIDD 220 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~-------------~~~~~~~iv~~~~~~~ 220 (617)
+++|++++|+++.++.+++.+++++++++++|++.... ..+.+... ..+.++.++.++....
T Consensus 91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
T PRK12583 91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP 170 (558)
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence 99999999999999999999999999999999976432 12222111 1233344444433211
Q ss_pred CCCCCCccCCceEeeHHHHHhcCccC-----CCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccC
Q 007119 221 QIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295 (617)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 295 (617)
.....|+++...+... ........++++++++|||||||.||||++||+++.+.+......+++.
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 1223455544332211 0111234578999999999999999999999999998888777778889
Q ss_pred CCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchH
Q 007119 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (617)
Q Consensus 296 ~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~ 372 (617)
++|++++.+|++|.++... .+.++..|+++++.. .++..+++.++++++|+++++|+++..+......
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--------- 311 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR--------- 311 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---------
Confidence 9999999999999999877 456788999988754 6899999999999999999999998766542100
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC-Cceeccccccccccc
Q 007119 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCL 451 (617)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~ 451 (617)
. ....+++|.+++||+++++++.+++.+.++ ..+.+.||+||++.+
T Consensus 312 ----------------~-----------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 358 (558)
T PRK12583 312 ----------------G-----------------NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPV 358 (558)
T ss_pred ----------------c-----------------CCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccc
Confidence 0 000148999999999999999999988886 469999999999987
Q ss_pred cccCCCC---CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecc
Q 007119 452 ISQLDEG---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528 (617)
Q Consensus 452 ~~~~~~~---~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGD 528 (617)
++..... ....+++|.|+++++++|+|++ +..++.++ .|||+|+|+.++.||+++++.+.+.|+.+|||+|||
T Consensus 359 ~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD 434 (558)
T PRK12583 359 SLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGD 434 (558)
T ss_pred eeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCC---eeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccc
Confidence 6654322 2356789999999999999954 67777776 899999999999999999999999888899999999
Q ss_pred eEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHH
Q 007119 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAW 599 (617)
Q Consensus 529 lg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~ 599 (617)
+|++++||++++.||++|+||+ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++|+++ +++++++
T Consensus 435 l~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~ 513 (558)
T PRK12583 435 LATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREF 513 (558)
T ss_pred eEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999996 8999999999999999999999999997654 5788888853 5678888
Q ss_pred HHHcCCCCChhh
Q 007119 600 AASEGIQSLAPS 611 (617)
Q Consensus 600 ~~~~~~~~~~~~ 611 (617)
++++...+.+|.
T Consensus 514 ~~~~L~~~~~P~ 525 (558)
T PRK12583 514 CKARIAHFKVPR 525 (558)
T ss_pred HHhhcccCcCCc
Confidence 887755555544
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=521.53 Aligned_cols=471 Identities=27% Similarity=0.378 Sum_probs=401.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.++|.+.++.+|+++|+... +. .+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l 74 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4579999999999999999999865 43 39999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++.++++.++++.+..+.+.+.....+.++.++.+++.... ........+
T Consensus 75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999999999998888887777777777777776653311 111234567
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
.++....... .......++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 7766543321 223345678999999999999999999999999998888777788899999999999999999998877
Q ss_pred HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.+++.|+++++.+ .++..+++.++++++|+++++|++++.+.+....
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-------------------------------- 275 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA-------------------------------- 275 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--------------------------------
Confidence 7999999999887 7899999999999999999999999988763211
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCC------CCCCcCCCC
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN------LSGHVGSPN 469 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~------~~~~vG~p~ 469 (617)
......++|.+++||++++.++.+.+.+.+++++++.||+||+++++........ ..+++|.|+
T Consensus 276 ----------~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 345 (521)
T PRK06187 276 ----------YFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPL 345 (521)
T ss_pred ----------CccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCcccccc
Confidence 0011148999999999999999999999889999999999999876665443333 567899999
Q ss_pred cCeEEEEeecCCCCCCCC--CCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCe
Q 007119 470 AACEIKLVDVPEMNYTSE--DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~--~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ 547 (617)
++++++|+| +++..++. ++ .|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+
T Consensus 346 ~~~~~~i~~-~~~~~~~~~~g~---~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~ 420 (521)
T PRK06187 346 PGVEARIVD-DDGDELPPDGGE---VGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDV 420 (521)
T ss_pred CCeEEEEEC-CCCCCCCCCCCC---eeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccce
Confidence 999999999 55566666 54 89999999999999999999999998 6789999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhh
Q 007119 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 548 ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~ 611 (617)
+|+ +|++|+|.+||+++.++++|.+++|++.+++ +.+++++++ ++.++.++++++...+.+|.
T Consensus 421 i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 492 (521)
T PRK06187 421 IIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPK 492 (521)
T ss_pred EEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCce
Confidence 997 8999999999999999999999999997643 578888885 45678888877654444443
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=524.45 Aligned_cols=479 Identities=23% Similarity=0.325 Sum_probs=380.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.++|.+.++++|+++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 21 ~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~l 91 (557)
T PRK07059 21 QYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIA 91 (557)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3568999999999999999999864 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCC-CCCC-----------
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QIPS----------- 224 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~-~~~~----------- 224 (617)
||+++|++++|+++.++.+++.++++++++++++++......+....... ..+.++....... ....
T Consensus 92 a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (557)
T PRK07059 92 AVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVK 170 (557)
T ss_pred HHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEeccccccccccccccccccccc
Confidence 99999999999999999999999999999999999877655554443322 2333333211000 0000
Q ss_pred --CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC----ccc---C
Q 007119 225 --LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG----TKF---Y 295 (617)
Q Consensus 225 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~---~ 295 (617)
...........++++...+...........++++++|+|||||||.||||+++|++++..+...... +.. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 250 (557)
T PRK07059 171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP 250 (557)
T ss_pred ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence 0000011234566665544332223344678999999999999999999999999998765433221 111 1
Q ss_pred CCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchH
Q 007119 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (617)
Q Consensus 296 ~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~ 372 (617)
..+.+++.+|++|.+++.. .+.++..|++.++.+ .++..+++.++++++|.+.++|.++..+.....
T Consensus 251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------- 320 (557)
T PRK07059 251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD---------- 320 (557)
T ss_pred CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC----------
Confidence 2457889999999998765 456788888877765 588999999999999999999999988765200
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceecccccccccccc
Q 007119 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452 (617)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~ 452 (617)
.. ....+++|.++.||+++++.+.+.|.+.+++++++.||+||++.++
T Consensus 321 ------------------------~~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 368 (557)
T PRK07059 321 ------------------------FD--------KLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVA 368 (557)
T ss_pred ------------------------cC--------cCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchh
Confidence 00 0001478999999999999999999998999999999999998766
Q ss_pred ccCCCC-CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEE
Q 007119 453 SQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (617)
Q Consensus 453 ~~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~ 531 (617)
+..... ....+++|.|+++++++|+| +++..++.+. .|||+++|+.++.|||++++.|.+.|..+|||+|||+|+
T Consensus 369 ~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~ 444 (557)
T PRK07059 369 TCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGE---PGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV 444 (557)
T ss_pred hcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEE
Confidence 544322 23467899999999999999 5567777776 899999999999999999999999998899999999999
Q ss_pred EecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHc
Q 007119 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASE 603 (617)
Q Consensus 532 ~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~~~~~ 603 (617)
+++||+++++||++|+||+ +|++|+|.+||+.+.++|+|.+++|+|.++. +.++++|+. +.+++.++++++
T Consensus 445 ~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~ 523 (557)
T PRK07059 445 MDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAFCKER 523 (557)
T ss_pred EcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999997 8999999999999999999999999997643 467888874 347788898887
Q ss_pred CCCCChhhh
Q 007119 604 GIQSLAPSD 612 (617)
Q Consensus 604 ~~~~~~~~~ 612 (617)
...+..|..
T Consensus 524 l~~~~~P~~ 532 (557)
T PRK07059 524 LTNYKRPKF 532 (557)
T ss_pred cccccCCcE
Confidence 665655543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=517.49 Aligned_cols=456 Identities=23% Similarity=0.316 Sum_probs=374.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
+.++.++|.+.++++|+++|+.+. + +.+||.||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 357899999999999999999764 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++|+++.++.+++.++++.++++.++++.+...... . ....+.++.... ..+.
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~~~-------------~~~~ 131 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-----L--ETPKIVIDAAAQ-------------ADSR 131 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-----c--ccceEEecCccc-------------chhH
Confidence 9999999999999999999999999999999999876543321 0 111222222110 0111
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QV 316 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~ 316 (617)
.+.... ..........++++++++|||||||.||+|++||+++...+......+.+..+|+++..+|++|.+++.. .+
T Consensus 132 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 210 (497)
T PRK06145 132 RLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGI 210 (497)
T ss_pred HHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHH
Confidence 111111 1111223456789999999999999999999999999876655555677889999999999999998876 45
Q ss_pred HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.+++.|+++++.+ .++..+++.++++++|++.++|+++..+......
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~-------------------------------- 258 (497)
T PRK06145 211 AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR-------------------------------- 258 (497)
T ss_pred HHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------------
Confidence 6789999998877 7999999999999999999999999888652100
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC--CCCCCCcCCCCcCe
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAAC 472 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ 472 (617)
.....+++|.+++||++++.++.+.+.+.| +.++++.||+||+++.++..... ....+++|.|++++
T Consensus 259 ----------~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~ 328 (497)
T PRK06145 259 ----------DRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHV 328 (497)
T ss_pred ----------cccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCc
Confidence 000014799999999999999999999988 57899999999998755543322 23567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCC
Q 007119 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (617)
Q Consensus 473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~ 552 (617)
+++++| +++..++.+. .|||+++|++++.|||++++.|++.| .++||+|||+|++|+||+++++||+||+||+ +
T Consensus 329 ~~~i~~-~~~~~~~~~~---~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~ 402 (497)
T PRK06145 329 EIRIAD-GAGRWLPPNM---KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-G 402 (497)
T ss_pred eEEEEC-CCCCCCCCCC---ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEe-C
Confidence 999999 5566666665 89999999999999999999999999 6899999999999999999999999999996 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
|++|+|.+||+.+.++|+|.+++|++.++. +.+++++++. ++++.++++++..++.+|.
T Consensus 403 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 470 (497)
T PRK06145 403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPR 470 (497)
T ss_pred CeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCC
Confidence 999999999999999999999999997754 5788888864 4678899988765555554
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=521.70 Aligned_cols=464 Identities=20% Similarity=0.249 Sum_probs=379.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..++.++|.++++ ||++|+++. + +.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 3589999998887 999999853 2 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
|+++|++++++.+.....++..++++++++.++++.... .....+....+..+.++..+.. .
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~ 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence 999999888877777888999999999999999986431 1122222234555555554321 1
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
...+.+++..... ..+..+..++++++|+|||||||.||||++||+++...+......+.+.++|++++.+|++|.+++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~ 238 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPM 238 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccc
Confidence 1234444433222 112234567899999999999999999999999999998877777888999999999999999887
Q ss_pred HH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+...+.....
T Consensus 239 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~----------------------- 295 (536)
T PRK10946 239 SSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS----------------------- 295 (536)
T ss_pred hhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-----------------------
Confidence 64 466899999998876 7899999999999999999999999988764211000
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCC-CCCCCCCCcCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSP 468 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p 468 (617)
....+++|.+++||+++++++.+.+.+.+|+++++.||+||++....... +.....+++|.|
T Consensus 296 -----------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p 358 (536)
T PRK10946 296 -----------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRP 358 (536)
T ss_pred -----------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcc
Confidence 00014899999999999999999999989999999999999764333221 122346789999
Q ss_pred C-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCe
Q 007119 469 N-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (617)
Q Consensus 469 ~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ 547 (617)
+ |+++++|+| ++++.++.|+ .|||+++|+.++.|||++++.|.+.|+.+|||+|||+|++|+||++++.||.+|+
T Consensus 359 ~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~ 434 (536)
T PRK10946 359 MSPDDEVWVAD-ADGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQ 434 (536)
T ss_pred cCCCceEEEEC-CCCCCCCCCC---ccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccce
Confidence 8 899999999 5667777776 8999999999999999999999999988999999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHc-CCCCChhh
Q 007119 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASE-GIQSLAPS 611 (617)
Q Consensus 548 ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~-~~~~~~~~ 611 (617)
+|+ +|++|+|.+||+.+.++|+|.+++|++.+++ +.++|+|++ +.+++.++++++ ...+++|.
T Consensus 435 i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~~l~~~~~P~ 505 (536)
T PRK10946 435 INR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIAEFKLPD 505 (536)
T ss_pred eec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhCCccccccCc
Confidence 995 8999999999999999999999999998754 468888885 568889999886 33466654
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=623.50 Aligned_cols=453 Identities=19% Similarity=0.249 Sum_probs=383.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.++|+++++++||++|+.+. +. .+||+||+++++++|+.|.+.|+++|++|+|+++|+++++++++
T Consensus 3093 ~~~~~~~l~~~~a~~~p~~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~l 3163 (3956)
T PRK12467 3093 SERLVHQLIEAQVARTPEAPALVFG---DQ------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALL 3163 (3956)
T ss_pred ccccHHHHHHHHHHhCCCcceEeeC---Cc------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHH
Confidence 4479999999999999999999875 43 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|+++|||++.++.+++.++++++++++++++....+.+... ... .++.++..
T Consensus 3164 avl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~~-~~~~~~~~------------------ 3220 (3956)
T PRK12467 3164 AVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AGD-TALTLDRL------------------ 3220 (3956)
T ss_pred HHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cCC-ceeeecch------------------
Confidence 9999999999999999999999999999999999987654432111 111 12222211
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
.........+.....++++++|+|||||||.||||+++|+++++.+.+....++++++|+++.+.|++|..+....+
T Consensus 3221 ---~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 3297 (3956)
T PRK12467 3221 ---DLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFL 3297 (3956)
T ss_pred ---hhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHH
Confidence 00011111223346789999999999999999999999999999999888888999999999999999999988889
Q ss_pred HHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 317 MTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 317 ~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+|+.|+++++.+ .++..+++.|+++++|++.++|++++.+.+...
T Consensus 3298 ~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------------- 3346 (3956)
T PRK12467 3298 WTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------------- 3346 (3956)
T ss_pred HHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------------
Confidence 9999999999986 588999999999999999999999988765210
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-C----CCCCCcCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-D----NLSGHVGS 467 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~----~~~~~vG~ 467 (617)
....++||.+++||+++++++.+.|.+.+ ++.++|+||+||++..++..... + ....++|+
T Consensus 3347 -------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~ 3413 (3956)
T PRK12467 3347 -------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGR 3413 (3956)
T ss_pred -------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCcc
Confidence 00114799999999999999999998877 57899999999998766543221 1 23468999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCC-------eeeecceEEEecCCcEEE
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG-------WFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g-------w~~TGDlg~~~~dG~l~i 540 (617)
|++|++++|+| ++++.++.|. .|||+|+|+++++||+|+|+.|+++|..++ ||+|||+|++++||+|+|
T Consensus 3414 p~~~~~~~v~d-~~~~~vp~G~---~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 3489 (3956)
T PRK12467 3414 PVAGRSIYVLD-GQLNPVPVGV---AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEY 3489 (3956)
T ss_pred ccCCCEEEEEC-CCCCCCCCCC---CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEE
Confidence 99999999999 6678888887 999999999999999999999999996554 699999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH------HHHHHHHHHcCCCCChhhh
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~------~~~~~~~~~~~~~~~~~~~ 612 (617)
+||+||+||+ +|++|+|.|||++|.++|+|.+++|++... ++.++|+|+++. +.++++++++...+++|..
T Consensus 3490 ~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~ 3568 (3956)
T PRK12467 3490 LGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQ 3568 (3956)
T ss_pred eccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCe
Confidence 9999999998 899999999999999999999999998653 468999999753 6788999988766777754
Q ss_pred h
Q 007119 613 C 613 (617)
Q Consensus 613 ~ 613 (617)
+
T Consensus 3569 ~ 3569 (3956)
T PRK12467 3569 L 3569 (3956)
T ss_pred e
Confidence 3
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=524.76 Aligned_cols=481 Identities=23% Similarity=0.287 Sum_probs=373.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..|+++.|.+.++.+|+++|+.+. + ..+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++|
T Consensus 19 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 89 (567)
T PLN02479 19 ALTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFG 89 (567)
T ss_pred ccCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 357999999999999999999753 2 3589999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCC-------CceEEEEECCCCCCCCCCCccCC
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-------TVRLIVVIGGIDDQIPSLPITTG 230 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-------~~~~iv~~~~~~~~~~~~~~~~~ 230 (617)
|+++|++++|+++.++.+++.+++++++++++|++....+...+....+. ....++.++..............
T Consensus 90 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (567)
T PLN02479 90 VPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALG 169 (567)
T ss_pred HHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccc
Confidence 99999999999999999999999999999999999877655444322111 11234444322111000000011
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHH
Q 007119 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (617)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 310 (617)
.....|.+++...............+++++|+|||||||.||||++||+++..........+.+..+|++++.+|++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 170 KGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN 249 (567)
T ss_pred cCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhh
Confidence 23345777765432211111223345778899999999999999999999876665554556788899999999999999
Q ss_pred HHHHHHH-HHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 311 ERANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 311 ~~~~~~~-~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
++...+. .++.|.++++..+++..+++.++++++|++.++|.++..+.+.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 304 (567)
T PLN02479 250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE------------------------- 304 (567)
T ss_pred hHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc-------------------------
Confidence 9876543 56677777766689999999999999999999999999886631100
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCC--C-------CC-
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD--E-------GD- 459 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~--~-------~~- 459 (617)
. ....+++|.+++||+++++++.+++.+. ++++++.||+||+++.++... + ..
T Consensus 305 -----~-----------~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
T PLN02479 305 -----T-----------ILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQ 367 (567)
T ss_pred -----c-----------cccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccc
Confidence 0 0001478999999999999999999875 889999999999865433221 0 00
Q ss_pred -CCCCCcCCCCcCeE-EEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCc
Q 007119 460 -NLSGHVGSPNAACE-IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537 (617)
Q Consensus 460 -~~~~~vG~p~~~~~-v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~ 537 (617)
....++|.+.++++ ++|+|++++..++.+.. +.|||+++|++++.|||++|+.|++.| .+|||+|||+|++|++|+
T Consensus 368 ~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~-~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~ 445 (567)
T PLN02479 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGK-TMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGY 445 (567)
T ss_pred cccccccCCCcCCcCceeEEcCCCCcccCCCCC-CceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCcc
Confidence 11246788888876 88998666666654321 279999999999999999999999999 689999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----------HHHHHHHHHc
Q 007119 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----------DALKAWAASE 603 (617)
Q Consensus 538 l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~~~~~~~~~ 603 (617)
++++||.||+||+ +|++|+|.+||+.+.+||.|.+++|+|.++. +.++++|++++ +++.++++++
T Consensus 446 l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~ 524 (567)
T PLN02479 446 IEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRER 524 (567)
T ss_pred EEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhh
Confidence 9999999999996 8999999999999999999999999998754 47888888642 4577888777
Q ss_pred CCCCChhhh
Q 007119 604 GIQSLAPSD 612 (617)
Q Consensus 604 ~~~~~~~~~ 612 (617)
...++.|..
T Consensus 525 l~~~~~P~~ 533 (567)
T PLN02479 525 LPAYWVPKS 533 (567)
T ss_pred cccccCCce
Confidence 555555543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=516.32 Aligned_cols=465 Identities=21% Similarity=0.287 Sum_probs=385.8
Q ss_pred CCCHHHHHHHH-HHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 78 IGTTHDNFVRA-VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 78 ~~tl~~~l~~~-a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
.++..+++.++ ++.+||++|+... + ..+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 45677888877 6679999998743 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++++.+++++++++....+.+.+....++.++.++.++... .....+
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 142 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPE-----------AGEVQL 142 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCC-----------cccccH
Confidence 999999999999999999999999999999999999887777776666667777777665421 011344
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeCChHHHHHHHH-
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPLAHIYERAN- 314 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (617)
.++...... ........++++++|+|||||||.||||++||+++...+.. ....+++..+|++++.+|++|.+++..
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 221 (508)
T TIGR02262 143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNA 221 (508)
T ss_pred HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHH
Confidence 454432221 11223455789999999999999999999999999887765 334467889999999999999999866
Q ss_pred HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+.++..|+++++.+ .++..+++.|++++||++.++|.++..+.....
T Consensus 222 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~------------------------------ 271 (508)
T TIGR02262 222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN------------------------------ 271 (508)
T ss_pred HHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc------------------------------
Confidence 456799999998876 579999999999999999999998877654100
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCe
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 472 (617)
.+...+.++|.+++||+++++++.+.|++.+++++++.||+||++.+++.....+...+++|.|++++
T Consensus 272 ------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~ 339 (508)
T TIGR02262 272 ------------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGY 339 (508)
T ss_pred ------------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCc
Confidence 00011248999999999999999999999999999999999999876655444445567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCC
Q 007119 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (617)
Q Consensus 473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~ 552 (617)
+++|+| +++..++.+. .|||+++|+.++.||+++++.+++.| .+|||+|||+++++++|.++++||.||+||+ +
T Consensus 340 ~v~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~ 413 (508)
T TIGR02262 340 RLRLVG-DGGQDVAAGE---PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-S 413 (508)
T ss_pred EEEEEC-CCCCCCCCCC---eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeee-C
Confidence 999999 7777777776 89999999999999999999999998 6899999999999999999999999999997 7
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC---------HHHHHHHHHHcCCCCChhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD---------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~~~~~~~~~~~~~~~~~ 611 (617)
|++|+|.+||+.+.++|+|.++++++.++. ..+.+++++. .+.+.++++++...+++|.
T Consensus 414 G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 484 (508)
T TIGR02262 414 GIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPR 484 (508)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCc
Confidence 999999999999999999999999997543 4677888753 3567778887755455553
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=570.64 Aligned_cols=473 Identities=24% Similarity=0.326 Sum_probs=382.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...++.+.|.+.++++||++|+... ++ +.+||+||.++++++|++|.+ ++++||+|+++++|++||++++
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~ 682 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN 682 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence 45689999999999999999999742 22 359999999999999999987 4899999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc--CCCCceEEEEECCCCCCCCCCCccCCceE
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~--~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
+||+++|++++|+++..+.+++.++++++++++++++....+.+.+... ..+....++..++...... ..
T Consensus 683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 754 (1146)
T PRK08633 683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV 754 (1146)
T ss_pred HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence 9999999999999999999999999999999999998776665542110 1222334444443211000 00
Q ss_pred eeHHHHHhcCccC-----CCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHH
Q 007119 234 LTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (617)
Q Consensus 234 ~~~~~l~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h 308 (617)
..+.+........ ........++|+++|+|||||||.||||++||++++..+......+.+.++|++++.+|++|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 834 (1146)
T PRK08633 755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834 (1146)
T ss_pred HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence 1122221110000 00013456899999999999999999999999999998887777788899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 309 IYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+...
T Consensus 835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 891 (1146)
T PRK08633 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK----------------------- 891 (1146)
T ss_pred HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc-----------------------
Confidence 999887 567899999998876 689999999999999999999999988765210
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-------
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG------- 458 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~------- 458 (617)
..+...+++|.+++||+++++++.+.+++.+|+++++.||+||+++.++...+.
T Consensus 892 -------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 952 (1146)
T PRK08633 892 -------------------LHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952 (1146)
T ss_pred -------------------cCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccc
Confidence 000111489999999999999999999999999999999999998766543221
Q ss_pred ---CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC---CCeeeecceEEE
Q 007119 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMW 532 (617)
Q Consensus 459 ---~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~---~gw~~TGDlg~~ 532 (617)
....+++|+|+|+++++|+|+++++.++.++ .|||+++|++++.||+++|+.|++.|.+ +|||+|||+|++
T Consensus 953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE---DGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC---ceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence 1346789999999999999977788887776 8999999999999999999999998832 389999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCC--CcceEEEEeeCCC---CeEEEEEEe---CHHHHHHHHHHcC
Q 007119 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCK--FVGQCFVYGDSFN---SALVAIVSV---DQDALKAWAASEG 604 (617)
Q Consensus 533 ~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p--~V~~~~V~g~~~~---~~~va~vv~---~~~~~~~~~~~~~ 604 (617)
|+||+++++||+||+||+ +|++|+|.|||+++.+|| .+.+++|++.+++ +.+++++++ +.++++++++++.
T Consensus 1030 ~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~l~~~~~~~~ 1108 (1146)
T PRK08633 1030 DEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKESG 1108 (1146)
T ss_pred cCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHHHHHHHHHhcC
Confidence 999999999999999996 899999999999999999 5668999998764 478888874 4567888887654
Q ss_pred CC-CChhh
Q 007119 605 IQ-SLAPS 611 (617)
Q Consensus 605 ~~-~~~~~ 611 (617)
++ ++.|+
T Consensus 1109 l~~~~~P~ 1116 (1146)
T PRK08633 1109 LPNLWKPS 1116 (1146)
T ss_pred CCcccCCc
Confidence 43 55554
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=527.56 Aligned_cols=437 Identities=20% Similarity=0.278 Sum_probs=336.3
Q ss_pred HHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 007119 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA 160 (617)
Q Consensus 81 l~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (617)
+.+.|++.++++|+++|+.+. + .+.++++||+||.++++++|++|.+. ++||+|+|+++|++||+++++||++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 889999999999999999754 2 23478899999999999999999988 7999999999999999999999999
Q ss_pred cCCeEEecCCC--------CCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 161 YSFISVPLYDT--------LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 161 ~G~v~vpl~~~--------~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
+|++++ +++. ...+++.+++++++++++|++......+...... +.+.+
T Consensus 77 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~--------------- 133 (525)
T PRK05851 77 AGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD--------------- 133 (525)
T ss_pred cCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc---------------
Confidence 999865 4432 1234566789999999999987665544332110 00100
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccC-CCcEEEEeCChHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-PSDVYISYLPLAHIYE 311 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~d~~l~~lPl~h~~~ 311 (617)
+........ ..+.....++|+++|+|||||||.||||++||+++++.+......+++. ++|++++++|++|.++
T Consensus 134 ---~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 208 (525)
T PRK05851 134 ---LATAAHTNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMG 208 (525)
T ss_pred ---ccccccccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCcc
Confidence 000000000 0111234678999999999999999999999999999888777777888 8999999999999999
Q ss_pred HHHHHHHHHhCcEEEEec---C--ChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 312 RANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 312 ~~~~~~~l~~G~~~~~~~---~--~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
+...+.+++.|+++++.+ + ++..+++.+.++++|++.. |.++..++......
T Consensus 209 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~-p~~~~~~l~~~~~~---------------------- 265 (525)
T PRK05851 209 LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAA-PNFAYNLIGKYARR---------------------- 265 (525)
T ss_pred HHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeC-CcHHHHHHHHhhcc----------------------
Confidence 988888999999999875 2 6788999999999998755 54443333211000
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHh---hCC---ceeccccccccccccccCCCC--
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG-- 458 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~---~~~---~v~~~YG~TE~~~~~~~~~~~-- 458 (617)
......+++|.+++||+++++++.++|.+. +|+ .+++.||+||++..++...+.
T Consensus 266 ------------------~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 327 (525)
T PRK05851 266 ------------------VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIG 327 (525)
T ss_pred ------------------ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCC
Confidence 000001489999999999999999988774 454 499999999998655543221
Q ss_pred -------------CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeee
Q 007119 459 -------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525 (617)
Q Consensus 459 -------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~ 525 (617)
....+++|+|++|++++|+|.++...++.++ .|||+|+|++++.|||++|+.+ .+|||+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~ 399 (525)
T PRK05851 328 LRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE---IGEIEIRGASMMSGYLGQAPID-----PDDWFP 399 (525)
T ss_pred ceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC---eEEEEEecCchhhccccCCccC-----CCCcee
Confidence 1234689999999999999955444566665 8999999999999999998643 579999
Q ss_pred ecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHH
Q 007119 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALK 597 (617)
Q Consensus 526 TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~ 597 (617)
|||+|+++ +|+|+|+||+||+||+ +|++|+|.|||+++.+||.|.+++|++.+++ +.+.++|++ +.+.+.
T Consensus 400 TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 477 (525)
T PRK05851 400 TGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGAR 477 (525)
T ss_pred ccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHH
Confidence 99999997 8999999999999997 8999999999999999999999999987643 345555543 344555
Q ss_pred HHHHHc
Q 007119 598 AWAASE 603 (617)
Q Consensus 598 ~~~~~~ 603 (617)
++++++
T Consensus 478 ~~~~~~ 483 (525)
T PRK05851 478 SEVVQR 483 (525)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-60 Score=529.43 Aligned_cols=466 Identities=17% Similarity=0.137 Sum_probs=355.3
Q ss_pred HHHHHHHHHhcCCCccEEEEEeecCc--cCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 82 HDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 82 ~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
..+|.+.++++||++|+++. +.. .++.+.+||+||.+++.++|++|+++|+++||+|+++++|++|++++++||+
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 44566665678999999886 321 2346789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch------HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceE
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
++|++++|+++.++++++.+++++++++++|+++... +...++..... ..++++.......... .....
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~---~~~~~ 329 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVK---LREGD 329 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCccccc---cccCC
Confidence 9999999999999999999999999999999986432 11111111111 1233332211000000 00113
Q ss_pred eeHHHHHhcCccC--C--CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 007119 234 LTYSNLLSQGRSN--L--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 234 ~~~~~l~~~~~~~--~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (617)
.+|++++...... . .+.....++++++|+|||||||.||||+++|++++.........+.+.++|+++++.|+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~ 409 (728)
T PLN03052 330 MSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWM 409 (728)
T ss_pred ccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHH
Confidence 4677776543211 1 11112356899999999999999999999999987766555545778899999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEecC--ChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 310 YERANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~~--~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
++....+.+|..|++++++++ ++..+++.++++++|++.++|+++..+.+.-.
T Consensus 410 ~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~------------------------- 464 (728)
T PLN03052 410 MGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC------------------------- 464 (728)
T ss_pred hHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC-------------------------
Confidence 998777789999999999984 55789999999999999999999988755200
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC-CceeccccccccccccccCCC-CCCCCCCc
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDE-GDNLSGHV 465 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~-~~~~~~~v 465 (617)
. + ....++||.+++||++++++...++...++ .++++.||+||+++.+....+ .....+++
T Consensus 465 ------~---~--------~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~ 527 (728)
T PLN03052 465 ------M---A--------GLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAF 527 (728)
T ss_pred ------c---c--------cCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCcc
Confidence 0 0 001148999999999999999888888765 579999999999764433222 22456889
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcc--ccccccCChhhhhcccC------CCCeeeecceEEEecCCc
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL--IFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGR 537 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~--v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~ 537 (617)
|.|.+|++++|+| ++++.++.|.+ ..|||+++++. ...+|+++. .+...|. .+.||+|||+|++|+||+
T Consensus 528 g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~ 604 (728)
T PLN03052 528 STPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGY 604 (728)
T ss_pred ccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCe
Confidence 9999999999999 66777766642 16999998653 345677764 3333342 223999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHH-hcCCCcceEEEEeeCCC----CeEEEEEEeC--------HHHHHHHHH
Q 007119 538 LKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVGQCFVYGDSFN----SALVAIVSVD--------QDALKAWAA 601 (617)
Q Consensus 538 l~i~gR~~d~ikl~~G~~i~p~~IE~~l-~~~p~V~~~~V~g~~~~----~~~va~vv~~--------~~~~~~~~~ 601 (617)
++|+||.||+||+ +|++|+|.|||+++ ..||.|.+++|+|.++. +.++++||+. .++++++++
T Consensus 605 l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~ 680 (728)
T PLN03052 605 YRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFN 680 (728)
T ss_pred EEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHH
Confidence 9999999999996 89999999999999 48999999999998753 5689999964 256676654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=514.98 Aligned_cols=455 Identities=21% Similarity=0.278 Sum_probs=364.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...++.++|.+.+. +|++++.+. + +++||.||.+++.++|++|.++ |++++++|+|+++|+++|++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 45689999988774 788988753 2 3599999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++|+++.++.+++.+++++++++++|++......+.... +.+. ++.++. ..
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~----------------~~ 131 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS----------------PA 131 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc----------------cc
Confidence 999999999999999999999999999999999999987766544432 2222 222221 12
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
|.+++..............++++++|+|||||||.||||++||+++..........+++..+|++++.+|++|.+++...
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~ 211 (529)
T PRK07867 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAG 211 (529)
T ss_pred HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHH
Confidence 44444322111122334567899999999999999999999999999888877777888999999999999999998774
Q ss_pred -HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 316 -VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 316 -~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+.++..|+++++.+ .++..+++.++++++|++.++|..+..+..... . .
T Consensus 212 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~-----~------------------------~ 262 (529)
T PRK07867 212 WAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE-----R------------------------P 262 (529)
T ss_pred HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----c------------------------c
Confidence 45789999998876 789999999999999999999999887654100 0 0
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeE
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (617)
....+++|. +.||+++++.. ..+.+.+|+++++.||+||++..++.. .....+++|.|+++
T Consensus 263 -------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~--~~~~~~~~g~~~~~-- 323 (529)
T PRK07867 263 -------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRT--PDTPPGALGPLPPG-- 323 (529)
T ss_pred -------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccC--CCCCCCCcCCCCCC--
Confidence 000136784 56888888775 556667799999999999998655432 22345789999999
Q ss_pred EEEeecCCCCCCCCCCC---------CCcceEEE-eCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 474 IKLVDVPEMNYTSEDQP---------CPRGEICV-RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 474 v~ivd~~~~~~~~~~~~---------~~~GEl~v-~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++++|.+++..++.+.. ...|||++ +|++++.||+++++.+.+.| .+|||+|||+|+++++|+++|+||
T Consensus 324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR 402 (529)
T PRK07867 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR 402 (529)
T ss_pred EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence 67788555555544420 01699999 99999999999999999999 699999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc--CCCCChhhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE--GIQSLAPSD 612 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~--~~~~~~~~~ 612 (617)
+||+||+ +|++|+|.+||+++.+||+|.+++|+|.+++ +.++++|++ ++++++++++++ ..++++|..
T Consensus 403 ~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~ 481 (529)
T PRK07867 403 LGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSY 481 (529)
T ss_pred ccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeE
Confidence 9999997 8999999999999999999999999998754 477787775 457888999874 333566654
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=514.58 Aligned_cols=474 Identities=22% Similarity=0.282 Sum_probs=379.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|+++++++||++++... .+ +..+.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~ 84 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRS--VE---GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI 84 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEee--cc---CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence 59999999999999999999743 12 23567999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++.+++.++++.+++++++++.+..+.+.+.....+.++.++...+... ... ........|.+
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ 160 (542)
T PRK06018 85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH-MPQ---TTLKNAVAYEE 160 (542)
T ss_pred HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc-ccc---cCccccccHHH
Confidence 99999999999999999999999999999999998888777776655666666665543211 000 01112345666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHH-HHH-HhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI-ASV-AGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~-~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+...... ........++++++|+|||||||.||||++||++++ ... ......+++..+|+++..+|++|.+++...+
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~ 239 (542)
T PRK06018 161 WIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAF 239 (542)
T ss_pred HhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHH
Confidence 6543221 112234467889999999999999999999999743 222 2233456788999999999999999988777
Q ss_pred HHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 317 ~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
.+++.|+++++.. .++..+++.++++++|++.++|+++..+.+......
T Consensus 240 ~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------- 290 (542)
T PRK06018 240 SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG----------------------------- 290 (542)
T ss_pred hhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------------
Confidence 7899999998864 688999999999999999999999998865321100
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-----------CCCC
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (617)
...+++|.+++||+++++++.++|++ +++++++.||+||++.+++.....+ ....
T Consensus 291 -------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (542)
T PRK06018 291 -------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQ 356 (542)
T ss_pred -------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhccc
Confidence 00148999999999999999999999 8999999999999986654331110 1235
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|+|.++++++|+| +++..++.+.. ..|||+++|++++.|||++ +.+.++.+|||+|||+|+++++|++++.||
T Consensus 357 ~~G~~~~g~~i~v~d-~~~~~~~~~~~-~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR 431 (542)
T PRK06018 357 KQGYPPFGVEMKITD-DAGKELPWDGK-TFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDR 431 (542)
T ss_pred cCCCCCCCcEEEEEC-CCCCCCCCCCC-ceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEec
Confidence 799999999999999 45555543210 2799999999999999984 344566799999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
.+|+|+. +|++|+|.+||+++.+||+|.+++|+|.++. +.++++|++. .+++.++++++...+.+|.
T Consensus 432 ~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 507 (542)
T PRK06018 432 SKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPD 507 (542)
T ss_pred CCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCc
Confidence 9999995 9999999999999999999999999997754 4677777753 4678889888754455553
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=516.51 Aligned_cols=454 Identities=22% Similarity=0.271 Sum_probs=357.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHhHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA 157 (617)
.|+.++|.+++ .|+++|+.+. + ..+||.||.++++++|.+|.++|+ ++||+|+|+++|+++|+++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 47888887754 7999999753 2 259999999999999999999999 7999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++|++|.++.+++.+++++++++++|++.+..+.+.+.. .+..+.+ .++. ..+.
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~----------------~~~~ 132 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDT----------------PAYA 132 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccc----------------hhhh
Confidence 9999999999999999999999999999999999887665554431 2333333 2221 1233
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH-
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV- 316 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~- 316 (617)
+++..... ..+.....++++++|+|||||||.||||+++|+++..........+++..+|++++.+|++|.+++...+
T Consensus 133 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 211 (540)
T PRK13388 133 ELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWA 211 (540)
T ss_pred hhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHH
Confidence 33321111 1122235679999999999999999999999999998887777778899999999999999999887654
Q ss_pred HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.++..|+++++.+ .++..+++.++++++|++..+|..+..+..... ..
T Consensus 212 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~-----------------------------~~-- 260 (540)
T PRK13388 212 PAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE-----------------------------RP-- 260 (540)
T ss_pred HHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC-----------------------------Cc--
Confidence 5799999998876 789999999999999999999998877654100 00
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEE
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 475 (617)
.....+++.+ . |++++++....+.+.+++++++.||+||++.+++.. .....+++|+|++++++
T Consensus 261 -----------~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i- 324 (540)
T PRK13388 261 -----------DDADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE--PGTPPGSIGRGAPGVAI- 324 (540)
T ss_pred -----------cccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecC--CCCCCCCCCCCCCCcEE-
Confidence 0001256643 3 556778888888888899999999999998665432 23456799999999765
Q ss_pred EeecCCCCCCC------CCC----CCCcceEEEe-CccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC
Q 007119 476 LVDVPEMNYTS------EDQ----PCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 476 ivd~~~~~~~~------~~~----~~~~GEl~v~-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~ 544 (617)
++.+....++ .+. +...|||+++ |++++.|||++|+.|++.| .+|||+|||+|++|+||+++++||+
T Consensus 325 -~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~ 402 (540)
T PRK13388 325 -YNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRT 402 (540)
T ss_pred -EcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccC
Confidence 3322211111 111 1138999998 9999999999999999999 6899999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc--CCCCChhhhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE--GIQSLAPSDC 613 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~--~~~~~~~~~~ 613 (617)
||+||+ +|++|+|.+||+++.+||+|.+|+|+|.+++ +.++++|++ +.++++++++.+ ..++++|..+
T Consensus 403 ~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~ 481 (540)
T PRK13388 403 ADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYV 481 (540)
T ss_pred CceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEE
Confidence 999997 8999999999999999999999999998754 456777764 346788898764 3336666543
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=513.49 Aligned_cols=462 Identities=25% Similarity=0.352 Sum_probs=380.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
+..|+.++|.+.++++|+++|+.+. + +.+||.||.+++.++|..|.+.|+++|++|+++++|+++|+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4469999999999999999999763 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc-chHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~-~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
||+++|++++|+++.++.+++.++++.++++.++++.. ....+.......+.+..++.++....
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 145 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD--------------- 145 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc---------------
Confidence 99999999999999999999999999999999999876 44444443434455555665543210
Q ss_pred HHHHHhcCc--cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 007119 236 YSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 236 ~~~l~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
+.++..... ..........++++++|+|||||||.||+|++||.++...+......+.+..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 225 (524)
T PRK06188 146 GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF 225 (524)
T ss_pred hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH
Confidence 111111110 000111223456799999999999999999999999999888877778889999999999999998875
Q ss_pred HHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+....
T Consensus 226 -~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------------- 275 (524)
T PRK06188 226 -FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL----------------------------- 275 (524)
T ss_pred -HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc-----------------------------
Confidence 466789999999987 7899999999999999999999999888662100
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC------CCCCCcC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD------NLSGHVG 466 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------~~~~~vG 466 (617)
.....+++|.+++||++++++....+.+.+++.+++.||+||++..++.....+ ...+++|
T Consensus 276 -------------~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G 342 (524)
T PRK06188 276 -------------RTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCG 342 (524)
T ss_pred -------------cCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccc
Confidence 000114899999999999999988888888999999999999975555433221 3457899
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
+|+++++++|+| +++..++.+. .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||.+|
T Consensus 343 ~p~~g~~v~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~ 417 (524)
T PRK06188 343 RPTPGLRVALLD-EDGREVAQGE---VGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKD 417 (524)
T ss_pred cccCCcEEEEEc-CCCCCCCCCC---eeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEecccc
Confidence 999999999999 4566666665 89999999999999999999999998 789999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+|++ +|++|+|++||+++.++|+|.+++|++.+++ +.++++|+++ .+++.++++++...++.|.
T Consensus 418 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 490 (524)
T PRK06188 418 MIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPK 490 (524)
T ss_pred ceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCc
Confidence 9996 8999999999999999999999999997654 4788888864 3678889988754454443
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=510.72 Aligned_cols=441 Identities=20% Similarity=0.272 Sum_probs=357.7
Q ss_pred HHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 007119 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (617)
Q Consensus 86 ~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (617)
+.+++.+||++|+... .++ +.+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3466789999998652 022 359999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCcc
Q 007119 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (617)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (617)
+|+++.++.+++.+++++++++++|++...... .. ....++++......
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~-------------------------~~~~~~~~~~~~~~ 123 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAG------RT-------------------------DVEDLAAFIASADA 123 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc------cc-------------------------cccchhhhhhhccc
Confidence 999999999999999999999999997643221 00 00112222111111
Q ss_pred -CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH-HHHHHhCc
Q 007119 246 -NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-VMTVYSGV 323 (617)
Q Consensus 246 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~-~~~l~~G~ 323 (617)
.........++++++++|||||||.||+|++||+++...+........+..+|++++.+|++|++++... +.++..|+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 0111223456889999999999999999999999998877766666677889999999999999998874 45788899
Q ss_pred EEEEec-CChhhHHHHHH--hhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007119 324 AVGFYQ-GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (617)
Q Consensus 324 ~~~~~~-~~~~~l~~~i~--~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l 400 (617)
++++.+ .++..++..+. ++++|++.++|.+++.+.+... .+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~----------------------------------~~-- 247 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG----------------------------------FD-- 247 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC----------------------------------cC--
Confidence 998876 67888888885 4899999999999987754200 00
Q ss_pred hHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCC---CCCCCCCcCCCCcCeEEEEe
Q 007119 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE---GDNLSGHVGSPNAACEIKLV 477 (617)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~v~iv 477 (617)
....+++|.+++||++++.+..+.+... |+++++.||+||++++...... .....+++|.|.++++++|+
T Consensus 248 ------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~ 320 (488)
T PRK09088 248 ------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV 320 (488)
T ss_pred ------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEE
Confidence 0001489999999999999988887764 8999999999999865432211 12356889999999999999
Q ss_pred ecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeec
Q 007119 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557 (617)
Q Consensus 478 d~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~ 557 (617)
| +++..++.+. .|||+|+|++++.||+++++.|++.|+.+|||+|||+|++|++|.++|.||+||+||. +|++|+
T Consensus 321 d-~~~~~~~~g~---~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~ 395 (488)
T PRK09088 321 D-DQGNDCPAGV---PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVY 395 (488)
T ss_pred C-CCCCCCcCCC---ceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-CCEEEC
Confidence 9 5566666665 8999999999999999999999999988999999999999999999999999999996 899999
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhhh
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|++||++|.++|.|.+++|++.+++ +..+++|++ +.+.+.++++++..++++|..
T Consensus 396 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 459 (488)
T PRK09088 396 PAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKH 459 (488)
T ss_pred HHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCE
Confidence 9999999999999999999998753 467788876 346788999887655665543
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=570.99 Aligned_cols=453 Identities=18% Similarity=0.212 Sum_probs=377.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..++.++|.+.++++||++|+.+. +. .+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++|
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~~------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---RY------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---CC------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999999999764 33 499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++||++.++.+++.++++++++++++++......+.. .+.+. ++ .+.
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~-~~---------------------~~~ 581 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLT-SL---------------------CYN 581 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCce-ee---------------------ecc
Confidence 99999999999999999999999999999999998765443322 11111 11 111
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
+...... ..+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++..|++|..++...+.
T Consensus 582 ~~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 659 (1296)
T PRK10252 582 APLAPQG--AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659 (1296)
T ss_pred ccccccc--CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHH
Confidence 1100000 01112336789999999999999999999999999999988888899999999999999999999888889
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+|+.|+++++.+ .++..+.+.++++++|++.++|+++..+.+......
T Consensus 660 ~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~---------------------------- 711 (1296)
T PRK10252 660 PFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG---------------------------- 711 (1296)
T ss_pred HHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc----------------------------
Confidence 999999999975 588999999999999999999999988765311000
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-------CCCCCCcC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-------DNLSGHVG 466 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-------~~~~~~vG 466 (617)
. .....++|.+++||+++++++.+.|.+.++++++|.||+||++..++..... .....++|
T Consensus 712 -----------~-~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG 779 (1296)
T PRK10252 712 -----------A-RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIG 779 (1296)
T ss_pred -----------c-cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcc
Confidence 0 0001489999999999999999999998899999999999998765543221 12346799
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC------CeeeecceEEEecCCcEEE
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED------GWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~------gw~~TGDlg~~~~dG~l~i 540 (617)
+|+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|..+ +||+|||+|++++||.|++
T Consensus 780 ~p~~~~~~~i~d-~~~~~~~~g~---~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~ 855 (1296)
T PRK10252 780 YPVWNTGLRILD-ARMRPVPPGV---AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEY 855 (1296)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEE
Confidence 999999999999 6777788776 89999999999999999999999998543 4999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeC---------CCCeEEEEEEeC------HHHHHHHHHHcCC
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---------FNSALVAIVSVD------QDALKAWAASEGI 605 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~---------~~~~~va~vv~~------~~~~~~~~~~~~~ 605 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.. ....++|+|++. .++++++++++..
T Consensus 856 ~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp 934 (1296)
T PRK10252 856 LGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLP 934 (1296)
T ss_pred ecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCc
Confidence 9999999997 89999999999999999999999877531 123799999963 4788999988766
Q ss_pred CCChhhh
Q 007119 606 QSLAPSD 612 (617)
Q Consensus 606 ~~~~~~~ 612 (617)
.+++|..
T Consensus 935 ~~~~P~~ 941 (1296)
T PRK10252 935 PHMVPVV 941 (1296)
T ss_pred hhcCCcE
Confidence 6766653
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-59 Score=510.34 Aligned_cols=477 Identities=25% Similarity=0.345 Sum_probs=374.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.+.++.+|+++|+.+. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++|+++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4569999999999999999999753 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc--hHHHHhhccCCCCceEEEEECCCCC-CCC-CC-CccCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT--LNSLLSCLSEVPTVRLIVVIGGIDD-QIP-SL-PITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~--~~~l~~~~~~~~~~~~iv~~~~~~~-~~~-~~-~~~~~~ 231 (617)
||+++|++++|+++.++.+++.+++++++++.++++... ...+.+.... ..+..+++++.... ... .. ......
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADP 168 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCc
Confidence 999999999999999999999999999999999997531 1222222111 11334444432110 000 00 001122
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc-----CcccCCCcEEEEeCCh
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-----GTKFYPSDVYISYLPL 306 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~lPl 306 (617)
...+++++.+.... ........++++++++|||||||.||||+++|+++......... .......+++++.+|+
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (541)
T TIGR03205 169 RIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL 247 (541)
T ss_pred ccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccH
Confidence 34567777653222 12223456789999999999999999999999998765442211 1122345799999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
+|.+++.. .+.++..|+++++.. .++..+++.|+++++|++.++|+++..+.+...
T Consensus 248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 305 (541)
T TIGR03205 248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS---------------------- 305 (541)
T ss_pred HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc----------------------
Confidence 99999877 456788999988876 799999999999999999999999987754100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSG 463 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~ 463 (617)
.+.....++|.+++||+++++++.+++.+.+++++++.||+||++..++..... ....+
T Consensus 306 --------------------~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 365 (541)
T TIGR03205 306 --------------------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPG 365 (541)
T ss_pred --------------------ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCC
Confidence 000011479999999999999999999998899999999999998766544322 24567
Q ss_pred CcCCCCcCeEEEEeecC-CCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEe
Q 007119 464 HVGSPNAACEIKLVDVP-EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~-~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
++|.|++++++++++.+ +++.++.+. .|||+++|++++.|||++|+.|++.| .++||+|||++++++||+++++|
T Consensus 366 ~~G~~~~~~~~~v~~~d~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~G 441 (541)
T TIGR03205 366 SIGLMLPGIELDVVSLDDPTKVLPPGE---VGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVD 441 (541)
T ss_pred CcceeccCceeEEEecCCCCccCCCCC---eeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEc
Confidence 89999999999987643 345555554 89999999999999999999999998 68999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-------HHHHHHHHHHcCCCCChhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~~~~~~~~~~~~~~~~~ 611 (617)
|.||+||+ +|++|+|.+||+++.+||.|.+++|+|.+++ +.++++|+++ .+++.++++++...++.|.
T Consensus 442 R~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 519 (541)
T TIGR03205 442 RKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPV 519 (541)
T ss_pred cccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCc
Confidence 99999996 8999999999999999999999999997643 4678888753 4668888888755566554
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=512.70 Aligned_cols=477 Identities=23% Similarity=0.307 Sum_probs=377.5
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..++.++|++.++.+||++|+.+. +. .+||.||.+++.++|.+|.++|+++|++|+|+++|+++|+++++|
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~---~~------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 102 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFY---GH------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG 102 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEEC---Cc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 368999999999999999999764 32 499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCC--CCCCCCCcc-----CC
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPSLPIT-----TG 230 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~--~~~~~~~~~-----~~ 230 (617)
|+++|++++|++|.++.+++.++++++++++++++....+.+.+..... .++.++..+..+ +........ ..
T Consensus 103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PRK06178 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181 (567)
T ss_pred HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEecccccccccccccccccccccc
Confidence 9999999999999999999999999999999999988877776655443 344444433211 000000000 00
Q ss_pred ceEeeHHHHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc-CcccCCCcEEEEeCChH
Q 007119 231 VQILTYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307 (617)
Q Consensus 231 ~~~~~~~~l~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~lPl~ 307 (617)
.....+.++.+.... .........++++++|+|||||||.||||++||++++........ ...+..+|++++++|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 261 (567)
T PRK06178 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEF 261 (567)
T ss_pred ccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchH
Confidence 000112222221111 111223356799999999999999999999999999876554433 25678899999999999
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
|.+++.. .+.+++.|+++++.+ .++..+++.++++++|.+.++|..+..+.....
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~----------------------- 318 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR----------------------- 318 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----------------------
Confidence 9999865 567899999999988 789999999999999999999988877654100
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEE--cCCCCcHHHHHHHHHhhCCceec-cccccccccccccCCC---C-
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS--GASPLSPDVLDFLKICFGGRVTE-GYGMTETSCLISQLDE---G- 458 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~--gga~l~~~~~~~~~~~~~~~v~~-~YG~TE~~~~~~~~~~---~- 458 (617)
.......+++.+.. .++++++++.+.++..+|..++. .||+||++..+..... .
T Consensus 319 -------------------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~ 379 (567)
T PRK06178 319 -------------------FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD 379 (567)
T ss_pred -------------------CCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc
Confidence 00000125666543 45899999999999998877775 7999998765443221 1
Q ss_pred ---CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC
Q 007119 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (617)
Q Consensus 459 ---~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d 535 (617)
....+++|.|++|++++++|++++..++.++ .|||+++|++++.|||++++.+++.| .+|||+|||+|++++|
T Consensus 380 ~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~---~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~ 455 (567)
T PRK06178 380 FDLLSQPVFVGLPVPGTEFKICDFETGELLPLGA---EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQ 455 (567)
T ss_pred cccccCCcccccccCCcEEEEEcCCCCCcCCCCC---ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecC
Confidence 1345679999999999999977778787776 89999999999999999999999988 6899999999999999
Q ss_pred CcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCC
Q 007119 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQ 606 (617)
Q Consensus 536 G~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~ 606 (617)
|+++|+||++|+||+ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++|++ +++.+.++++++...
T Consensus 456 g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 534 (567)
T PRK06178 456 GFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAV 534 (567)
T ss_pred CeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcc
Confidence 999999999999997 8999999999999999999999999997643 578888886 457789999987655
Q ss_pred CChhh
Q 007119 607 SLAPS 611 (617)
Q Consensus 607 ~~~~~ 611 (617)
+++|.
T Consensus 535 ~~~p~ 539 (567)
T PRK06178 535 YKVPE 539 (567)
T ss_pred cCCce
Confidence 66664
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=619.10 Aligned_cols=453 Identities=19% Similarity=0.218 Sum_probs=383.9
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..++.++|.+.++++||++|+.+. ++ .+||+||.++++++|+.|.+.|+++|++|+|+++|+++|+++++|
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~---~~------~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la 580 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFG---EE------TLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA 580 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 568999999999999999999864 33 499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|+++|||+|.++.+++.++++++++++++++......+. ..... .++.++...
T Consensus 581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~------------------ 637 (5163)
T PRK12316 581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGV-QVLDLDRPA------------------ 637 (5163)
T ss_pred HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCc-eEEEecCcc------------------
Confidence 9999999999999999999999999999999999876533321 11112 223322210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
..... .....+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++.+|++|.+++...+.
T Consensus 638 ~~~~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~ 716 (5163)
T PRK12316 638 AWLEG-YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFW 716 (5163)
T ss_pred hhhcc-CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHH
Confidence 00000 01112223456899999999999999999999999999999998888889999999999999999999988889
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+|+.|+++++.+ .++..+++.++++++|++.++|++++.+.+...
T Consensus 717 ~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------- 765 (5163)
T PRK12316 717 PLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED------------------------------- 765 (5163)
T ss_pred HHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc-------------------------------
Confidence 999999999975 689999999999999999999999998764200
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCC--CCCCCCCCcCCCCc
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD--EGDNLSGHVGSPNA 470 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~ 470 (617)
....+++|.+++||+++++++.+.+.+.+ +++++|.||+||++..++... .......++|+|++
T Consensus 766 -------------~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~ 832 (5163)
T PRK12316 766 -------------VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIA 832 (5163)
T ss_pred -------------cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccC
Confidence 00014899999999999999999997765 689999999999985443322 22245678999999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC------CCCeeeecceEEEecCCcEEEEecC
Q 007119 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 471 ~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|. .++||+|||+|++++||.|+|+||+
T Consensus 833 ~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~ 908 (5163)
T PRK12316 833 NLACYILD-ANLEPVPVGV---LGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRI 908 (5163)
T ss_pred CCEEEEEC-CCCCCCCCCC---ceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeeccc
Confidence 99999999 5677777776 899999999999999999999999883 3459999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeC------HHHHHHHHHHcCCCCChhhhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVD------QDALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~~ 613 (617)
||+||+ +|++|+|.|||+++.+||+|.+|+|++.+ ++.++|+|++. ++.+++|++++...+++|..+
T Consensus 909 d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i 981 (5163)
T PRK12316 909 DHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQW 981 (5163)
T ss_pred CCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeE
Confidence 999997 89999999999999999999999999998 78899999975 368999999988778877643
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-59 Score=514.16 Aligned_cols=478 Identities=24% Similarity=0.351 Sum_probs=377.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..++.++|.++++++|+++|++.. + +.+||+||.+++.++|+.|. +.|+++||+|+++++|+++++++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 35999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCC--C--C----------C
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--D--Q----------I 222 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~--~--~----------~ 222 (617)
||+++|++++|++|.++.+++.++++++++++++++......+.+.....+ ...++.++... . . .
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYV 173 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhh
Confidence 999999999999999999999999999999999999877666555443333 23333322100 0 0 0
Q ss_pred CC-CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcc----cCC-
Q 007119 223 PS-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYP- 296 (617)
Q Consensus 223 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~----~~~- 296 (617)
.. ...........+.+..........+.....++++++++|||||||.||||++||.++...+......+. +.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~ 253 (560)
T PRK08751 174 KKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG 253 (560)
T ss_pred hccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCC
Confidence 00 000000112345555544332222233456789999999999999999999999999887765443322 333
Q ss_pred CcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHH
Q 007119 297 SDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373 (617)
Q Consensus 297 ~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 373 (617)
.+++++.+|++|.+++.. .+.++..|++.++.. .++..+++.++++++|++.++|.++..+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------- 322 (560)
T PRK08751 254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG----------- 322 (560)
T ss_pred CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC-----------
Confidence 367889999999999865 345677777776654 588999999999999999999999988765200
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccc
Q 007119 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS 453 (617)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~ 453 (617)
.+...+ +++|.+++||+++++++.+.+++.+++++++.||+||+++.++
T Consensus 323 -----------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 371 (560)
T PRK08751 323 -----------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAAC 371 (560)
T ss_pred -----------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCcee
Confidence 000001 3799999999999999999999988999999999999987665
Q ss_pred cCCCC-CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEE
Q 007119 454 QLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532 (617)
Q Consensus 454 ~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~ 532 (617)
..... ....+++|.|+++++++++| +++..++.++ .|||+|+|+.++.||+++|+.|++.|+.+|||+|||+|++
T Consensus 372 ~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~ 447 (560)
T PRK08751 372 INPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGE---IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM 447 (560)
T ss_pred cccccccccCCCcCccCCCceEEEEC-CCCCCCCCCC---ceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence 43321 24457899999999999999 6667777776 8999999999999999999999999988999999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHcC
Q 007119 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASEG 604 (617)
Q Consensus 533 ~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~~~~~~ 604 (617)
|++|+++++||.+|+||+ +|++|+|.+||+.+.++|+|.+++|+|.++. +.++++|+. +.+++.++++++.
T Consensus 448 ~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l 526 (560)
T PRK08751 448 DEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHARANL 526 (560)
T ss_pred cCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHHHHhh
Confidence 999999999999999997 8999999999999999999999999997754 356666664 3467888888775
Q ss_pred CCCChhhh
Q 007119 605 IQSLAPSD 612 (617)
Q Consensus 605 ~~~~~~~~ 612 (617)
.++++|..
T Consensus 527 ~~~~~P~~ 534 (560)
T PRK08751 527 TGYKQPRI 534 (560)
T ss_pred hhccCCeE
Confidence 55655543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=503.43 Aligned_cols=427 Identities=25% Similarity=0.320 Sum_probs=352.9
Q ss_pred HHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEe
Q 007119 88 AVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 88 ~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 167 (617)
..+..++++|+.+. + +.+||+||.++++++|..|. ++|+|+++++|+++|+++++||+++|++++|
T Consensus 9 ~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~ 74 (471)
T PRK07787 9 VAAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVP 74 (471)
T ss_pred hhcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence 34567888888753 2 35999999999999999996 5799999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNL 247 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (617)
+++.++.+++.+++++++++.++++.... ...++.+. .... ...+
T Consensus 75 l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~---~~~~---------------~~~~----------- 119 (471)
T PRK07787 75 VPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVP---VRLH---------------ARSW----------- 119 (471)
T ss_pred cCCCCChHHHHHHHHhcCCCEEEecCCcc------ccccccee---eecc---------------cccc-----------
Confidence 99999999999999999999999976311 00111111 0000 0000
Q ss_pred CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEE
Q 007119 248 QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVG 326 (617)
Q Consensus 248 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~ 326 (617)
.......++|+++|+|||||||.||||++||+++...+......+.+..+|++++.+|++|.+++.. .+.+++.|++++
T Consensus 120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~ 199 (471)
T PRK07787 120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFV 199 (471)
T ss_pred ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEE
Confidence 0112245789999999999999999999999999998887777778889999999999999999887 566899999999
Q ss_pred Eec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHH
Q 007119 327 FYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405 (617)
Q Consensus 327 ~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~ 405 (617)
+.+ .++..+++.++ +++|++.++|.++..+.+....
T Consensus 200 ~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------------ 236 (471)
T PRK07787 200 HTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------------ 236 (471)
T ss_pred ecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc------------------------------------------
Confidence 876 78999999999 9999999999999887652000
Q ss_pred HHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCC
Q 007119 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYT 485 (617)
Q Consensus 406 ~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~ 485 (617)
.....++|.+++||+++++++.+++++.++.++++.||+||++..++.........+++|.|+++++++|+|. ++..+
T Consensus 237 -~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~-~~~~~ 314 (471)
T PRK07787 237 -ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDE-DGGPV 314 (471)
T ss_pred -cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECC-CCCCC
Confidence 0001479999999999999999999998999999999999998655444333445678999999999999994 44544
Q ss_pred CC-CCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC-CCeeecCCeeeechHHHHH
Q 007119 486 SE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQGEYIAAEKIEN 563 (617)
Q Consensus 486 ~~-~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~-~d~ikl~~G~~i~p~~IE~ 563 (617)
+. ++ ..|||+++|++++.||+++++.|++.|..+|||+|||+|++++||+++++||+ ||++|. +|++|+|.+||+
T Consensus 315 ~~~~~--~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~ 391 (471)
T PRK07787 315 PHDGE--TVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIET 391 (471)
T ss_pred CCCCC--CceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHH
Confidence 42 22 27999999999999999999999999988999999999999999999999996 899995 899999999999
Q ss_pred HHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhh
Q 007119 564 VYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 564 ~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~ 611 (617)
.+.++|.|.+++|++.++. +.++++|++ +++++.++++++...++.|.
T Consensus 392 ~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~l~~~~~P~ 446 (471)
T PRK07787 392 ALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQLSVHKRPR 446 (471)
T ss_pred HHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhhcccccCCc
Confidence 9999999999999998754 578899886 56788999988765565553
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=517.25 Aligned_cols=466 Identities=23% Similarity=0.269 Sum_probs=364.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.+.++++||++|+.+. +. .+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~~---~~------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~l 105 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLFE---DQ------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEeC---CC------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4568999999999999999999864 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..........++..++.... ....|
T Consensus 106 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 175 (600)
T PRK08279 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD----------DPEGY 175 (600)
T ss_pred HHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc----------ccccH
Confidence 99999999999999999999999999999999999988777766655443333333333321100 01234
Q ss_pred HHHHhcCccCC----CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 237 SNLLSQGRSNL----QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 237 ~~l~~~~~~~~----~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
.++.......+ .......++++++|+|||||||.||||++||+++++.+.+....+.+.++|++++.+|++|.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~ 255 (600)
T PRK08279 176 EDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGG 255 (600)
T ss_pred HHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhH
Confidence 44433221111 11233457899999999999999999999999999999888777889999999999999999998
Q ss_pred HHHH-HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcC
Q 007119 313 ANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (617)
Q Consensus 313 ~~~~-~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (617)
...+ .++..|+++++.+ +++..+++.++++++|++.++|.+++.+......
T Consensus 256 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~--------------------------- 308 (600)
T PRK08279 256 TVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPK--------------------------- 308 (600)
T ss_pred HHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCC---------------------------
Confidence 8755 5678888888876 7999999999999999999999998877652100
Q ss_pred CCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccccccccCCCCCCCCCCcCCCC
Q 007119 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (617)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (617)
. .....++|.+ +|+++++++.+.+...++. .+++.||+||++..++. .....+++|.+.
T Consensus 309 ----~-----------~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~---~~~~~~~~g~~~ 368 (600)
T PRK08279 309 ----P-----------TDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN---VFNFDGTVGRVP 368 (600)
T ss_pred ----c-----------cccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc---cCCCCccccccc
Confidence 0 0001367754 4778999999999998876 59999999998754332 123456788766
Q ss_pred c----CeEEEEeecCCC----------CCCCCCCCCCcceEE--EeCccccccccCChhhhhccc------CCCCeeeec
Q 007119 470 A----ACEIKLVDVPEM----------NYTSEDQPCPRGEIC--VRGPLIFKGYYKDEIQTKEVI------DEDGWFHTG 527 (617)
Q Consensus 470 ~----~~~v~ivd~~~~----------~~~~~~~~~~~GEl~--v~g~~v~~GY~~~~~~t~~~~------~~~gw~~TG 527 (617)
+ +..+...+.+.+ ..++.++ .|||+ ++|++++.|| ++++.|.+.| +.++||+||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~---~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG 444 (600)
T PRK08279 369 LWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGE---VGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG 444 (600)
T ss_pred ccccccceeeeeccCcCceeeCCCCccccCCCCC---ceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence 6 333322221111 1233343 89998 7899999999 9999988876 236899999
Q ss_pred ceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEe------CHHHHH
Q 007119 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSV------DQDALK 597 (617)
Q Consensus 528 Dlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~------~~~~~~ 597 (617)
|+|++|+||+|++.||+||+||+ +|++|+|.|||+++.+||+|.+|+|+|.++. ...+++|+. +.+++.
T Consensus 445 Dlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~ 523 (600)
T PRK08279 445 DLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALA 523 (600)
T ss_pred ceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHH
Confidence 99999999999999999999997 8999999999999999999999999997632 334444443 357899
Q ss_pred HHHHHcCCCCChhhhh
Q 007119 598 AWAASEGIQSLAPSDC 613 (617)
Q Consensus 598 ~~~~~~~~~~~~~~~~ 613 (617)
++++++...+++|..+
T Consensus 524 ~~l~~~L~~~~~P~~i 539 (600)
T PRK08279 524 AHLYERLPAYAVPLFV 539 (600)
T ss_pred HHHHhhCccccCCeEE
Confidence 9999887667777643
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=511.82 Aligned_cols=478 Identities=21% Similarity=0.311 Sum_probs=372.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..+++.++|.+.++++|+++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++++
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999764 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCC--C--CCC--CCCcc--
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--D--QIP--SLPIT-- 228 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~--~--~~~--~~~~~-- 228 (617)
||+++|++++|++|.++.+++.++++.+++++++++......+...... .....++...... . ... .....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQ 171 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEeccccccccccccccchhhccc
Confidence 9999999999999999999999999999999999987655544332211 1122222211000 0 000 00000
Q ss_pred --------CCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc-Cccc-CCCc
Q 007119 229 --------TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKF-YPSD 298 (617)
Q Consensus 229 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~-~~~d 298 (617)
.......|..+.... ..........++++++++|||||||.||||++||+++......... .+.. ..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 250 (563)
T PRK06710 172 SNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEE 250 (563)
T ss_pred ccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCc
Confidence 000001122222111 1111111223578999999999999999999999999765433222 2333 3456
Q ss_pred EEEEeCChHHHHHHHHH-HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHH
Q 007119 299 VYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376 (617)
Q Consensus 299 ~~l~~lPl~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~ 376 (617)
++++++|++|.+++... +.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+......
T Consensus 251 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------- 317 (563)
T PRK06710 251 VVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL------------- 317 (563)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc-------------
Confidence 88999999999998764 45788999999876 7899999999999999999999999887642000
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCC
Q 007119 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (617)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~ 456 (617)
+....+++|.+++||+++++++.+++++.+++++++.||+||++..+....
T Consensus 318 -----------------------------~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 368 (563)
T PRK06710 318 -----------------------------KEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF 368 (563)
T ss_pred -----------------------------ccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence 000013789999999999999999999989999999999999987554332
Q ss_pred C-CCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC
Q 007119 457 E-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (617)
Q Consensus 457 ~-~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d 535 (617)
. .....+++|.|.++++++++|++++..++.+. .|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++
T Consensus 369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~ 444 (563)
T PRK06710 369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE---IGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDED 444 (563)
T ss_pred ccccccCCccCCCCCCCeEEEEECCCCccCCCCC---ceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCC
Confidence 2 22345789999999999999977777777776 89999999999999999999999988 6899999999999999
Q ss_pred CcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCC
Q 007119 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQ 606 (617)
Q Consensus 536 G~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~ 606 (617)
|.++++||.||+||+ +|++|+|.+||+.+.++|.|.+++|+|.++. +.++++|++ +++++.++++++...
T Consensus 445 g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 523 (563)
T PRK06710 445 GFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAA 523 (563)
T ss_pred CcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhccc
Confidence 999999999999997 8999999999999999999999999997653 567888875 356788888876555
Q ss_pred CChhhh
Q 007119 607 SLAPSD 612 (617)
Q Consensus 607 ~~~~~~ 612 (617)
+++|..
T Consensus 524 ~~~P~~ 529 (563)
T PRK06710 524 YKVPKV 529 (563)
T ss_pred ccCCcE
Confidence 555543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=603.35 Aligned_cols=456 Identities=19% Similarity=0.216 Sum_probs=381.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.++|++.++++||++|+.+. ++ .+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++
T Consensus 1572 ~~~~~~~~~~~~a~~~p~~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~l 1642 (3956)
T PRK12467 1572 LARLVHQLIEDQAAATPEAVALVFG---EQ------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLL 1642 (3956)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEeC---Cc------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHH
Confidence 4468999999999999999999864 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|+++|||+|.++.+++.++++++++++++++......+. .....+ ++.++...
T Consensus 1643 avlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~-~~~~~~~~----------------- 1700 (3956)
T PRK12467 1643 AILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLP----LPDGLR-SLVLDQED----------------- 1700 (3956)
T ss_pred HhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCc----cccCCc-EEEecccc-----------------
Confidence 99999999999999999999999999999999999876543321 111122 22222210
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+.... .....+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|+++.+.|++|.++++..+
T Consensus 1701 -~~~~~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 1778 (3956)
T PRK12467 1701 -DWLEG-YSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF 1778 (3956)
T ss_pred -chhcc-CCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHH
Confidence 00011 1111223345689999999999999999999999999999998888888999999999999999999988888
Q ss_pred HHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 317 ~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+|+.|+++++.+ .++..+++.|+++++|++.++|+++..+..... .
T Consensus 1779 ~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~---------------------------- 1829 (3956)
T PRK12467 1779 WPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-Q---------------------------- 1829 (3956)
T ss_pred HHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-c----------------------------
Confidence 9999999999976 478999999999999999999999998865200 0
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-----CCCCCCcC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVG 466 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG 466 (617)
....++||.+++||+++++++.+.|.+.+ ++.++|+||+||++..++..... .....++|
T Consensus 1830 --------------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG 1895 (3956)
T PRK12467 1830 --------------VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIG 1895 (3956)
T ss_pred --------------cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcc
Confidence 00014899999999999999999998876 47799999999998766543221 12356899
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC-------CCeeeecceEEEecCCcEE
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLK 539 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~ 539 (617)
+|+++++++|+| ++++.++.|. .|||+|+|+++++||+|+|+.|++.|.. ++||+|||+|++++||.|+
T Consensus 1896 ~p~~~~~~~vld-~~~~~vp~G~---~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~ 1971 (3956)
T PRK12467 1896 QPIANLSTYILD-ASLNPVPIGV---AGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIE 1971 (3956)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---ceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEE
Confidence 999999999999 6777888887 8999999999999999999999999832 3599999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH--------------HHHHHHHHHc
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ--------------DALKAWAASE 603 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~--------------~~~~~~~~~~ 603 (617)
|+||+||+||+ +|++|+|.|||+.+.+||+|.+|+|++.+. .+.++|+|++.. ++++++++++
T Consensus 1972 ~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~ 2050 (3956)
T PRK12467 1972 YLGRIDHQVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKAS 2050 (3956)
T ss_pred EecccCceEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhh
Confidence 99999999998 899999999999999999999999999763 368999998743 3688888887
Q ss_pred CCCCChhhhh
Q 007119 604 GIQSLAPSDC 613 (617)
Q Consensus 604 ~~~~~~~~~~ 613 (617)
...+++|..+
T Consensus 2051 Lp~ymvP~~~ 2060 (3956)
T PRK12467 2051 LPEYMVPAHL 2060 (3956)
T ss_pred CchhhCchhh
Confidence 6667776543
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=505.23 Aligned_cols=447 Identities=20% Similarity=0.216 Sum_probs=360.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...++.+.|.+.++++||++|+... ++ .+||+|+.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~~------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---DG------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---CC------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3568999999999999999999753 32 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.+++++++++.++++....+.+..... .++.++...
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~----------------- 160 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT----------------- 160 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch-----------------
Confidence 999999999999999999999999999999999998876655443211 122222110
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHH--HHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS--VAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
..... ....+...++.++|+|||||||.||||++||...... .........+..+|++++.+|++|.+++..
T Consensus 161 ~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~ 234 (516)
T PRK13383 161 AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM 234 (516)
T ss_pred hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence 00000 0011123456789999999999999999999843211 112223456788999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+.++..|+++++.. .++..+++.++++++|.+.++|.++..+.+..... +.
T Consensus 235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------~~---- 287 (516)
T PRK13383 235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRV-----------------------RA---- 287 (516)
T ss_pred HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccc-----------------------cc----
Confidence 778899999998766 79999999999999999999999998876521100 00
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCe
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAAC 472 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ 472 (617)
....+++|.+++||+++++++.+.|.+.+++.+++.||+||++..+...... ....+++|.|++++
T Consensus 288 -------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~ 354 (516)
T PRK13383 288 -------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGC 354 (516)
T ss_pred -------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCc
Confidence 0001489999999999999999999999999999999999998655433222 24567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCC
Q 007119 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (617)
Q Consensus 473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~ 552 (617)
+++|+| +++..++.+. .|||+++|+.++.||++++.. .+ .+|||+|||+|++|++|+++++||+||+||+ +
T Consensus 355 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~ 425 (516)
T PRK13383 355 PVRILD-RNNRPVGPRV---TGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-G 425 (516)
T ss_pred EEEEEC-CCCCCCCCCC---ceEEEEecCcccccccCCchh---he-ecCceecceeEEEcCCccEEEeccccceEEE-C
Confidence 999999 5556666665 899999999999999987642 23 5899999999999999999999999999997 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAP 610 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~ 610 (617)
|++|+|.+||++|.+||.|.+++|++.++. +.++++|+++ .+.++++++++...++.|
T Consensus 426 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p 492 (516)
T PRK13383 426 GENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQP 492 (516)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999999997643 5778888863 467888888875445544
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=608.43 Aligned_cols=458 Identities=19% Similarity=0.201 Sum_probs=384.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...+++++|++.++++||++|+.+. ++. +||+||+++++++|+.|.+.|+++|++|+|++++++++++++
T Consensus 3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~~------~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691 3717 PLEQSYVRLFEAQVAAHPQRIAASCL---DQQ------WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred ccccCHHHHHHHHHHhCCCceEEEcC---CCc------ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34569999999999999999999876 554 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCC--ceEEEEECCCCCCCCCCCccCCceE
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
+||+++|+++|||++.++.+++.++++++++++++++.............+.. ...++..+.
T Consensus 3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 3851 (4334)
T PRK05691 3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---------------- 3851 (4334)
T ss_pred HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc----------------
Confidence 99999999999999999999999999999999999998765543333322211 111222111
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 007119 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
..........+.....|+++|||+|||||||.||||+++|+++++.+.+....+.++++|+++...|++|..+..
T Consensus 3852 -----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~ 3926 (4334)
T PRK05691 3852 -----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW 3926 (4334)
T ss_pred -----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH
Confidence 111111111222345789999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
..+.++..|+++++.+ .++..+.+.++++++|++.++|+++..+......
T Consensus 3927 ~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------- 3980 (4334)
T PRK05691 3927 QFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ-------------------------- 3980 (4334)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc--------------------------
Confidence 9999999999999876 4789999999999999999999999887642100
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC----CCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----NLSGH 464 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----~~~~~ 464 (617)
...+||.+++||+++++++.+.|.+.+ +++++|.||+|||+..++...... ....+
T Consensus 3981 -------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~ 4041 (4334)
T PRK05691 3981 -------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLP 4041 (4334)
T ss_pred -------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCC
Confidence 014899999999999999999998765 789999999999987665432211 23457
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC-------CCCeeeecceEEEecCCc
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-------EDGWFHTGDIGMWIPGGR 537 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~-------~~gw~~TGDlg~~~~dG~ 537 (617)
+|+|+++++++|+| +.++.++.|. .|||+|+|++|++||+|+|+.|+++|. .++||||||+|++++||.
T Consensus 4042 iG~p~~~~~~~v~d-~~~~~~p~g~---~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~ 4117 (4334)
T PRK05691 4042 IGSPTDNNRLYLLD-EALELVPLGA---VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGV 4117 (4334)
T ss_pred CCCccCCCEEEEEC-CCCCCCCCCC---ceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCc
Confidence 99999999999999 6677788886 999999999999999999999999993 356999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeC--CCCeEEEEEEeCH---------HHHHHHHHHcCCC
Q 007119 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQ---------DALKAWAASEGIQ 606 (617)
Q Consensus 538 l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~---------~~~~~~~~~~~~~ 606 (617)
|+|+||+|++||+ +|++|++.|||+.|.++|+|.+++|+... .++.++|+|++.. +.++++++++...
T Consensus 4118 l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ 4196 (4334)
T PRK05691 4118 LEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPD 4196 (4334)
T ss_pred EEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCCh
Confidence 9999999999998 89999999999999999999999887543 2468999999742 4578888888777
Q ss_pred CChhhhh
Q 007119 607 SLAPSDC 613 (617)
Q Consensus 607 ~~~~~~~ 613 (617)
+++|..+
T Consensus 4197 ymvP~~~ 4203 (4334)
T PRK05691 4197 YMVPLHW 4203 (4334)
T ss_pred hhcCcce
Confidence 8887654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-59 Score=609.97 Aligned_cols=448 Identities=19% Similarity=0.232 Sum_probs=383.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...+++++|++.++++||++|+.+. ++ .+||+||.++++++|+.|.+.|+++|++|+|+++++++|++++
T Consensus 3054 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~ 3124 (5163)
T PRK12316 3054 PLERGVHRLFEEQVERTPDAVALAFG---EQ------RLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGL 3124 (5163)
T ss_pred CCcCCHHHHHHHHHHhCCCCeeEeeC---Ce------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHH
Confidence 34578999999999999999999865 43 4999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++|||++.++.+++.++++++++++++++... . ....... .++.++...
T Consensus 3125 lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~--~----~~~~~~~-~~~~~~~~~---------------- 3181 (5163)
T PRK12316 3125 LAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL--R----LPLAQGV-QVLDLDRGD---------------- 3181 (5163)
T ss_pred HHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc--c----CCccCCc-cEEEecccc----------------
Confidence 9999999999999999999999999999999999987654 1 1111112 223332210
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
. ......+.....++++++|+|||||||.||||+++|+++.+.+.+....+++.++|+++.+.|++|..+....
T Consensus 3182 -----~-~~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i 3255 (5163)
T PRK12316 3182 -----E-NYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEEL 3255 (5163)
T ss_pred -----c-cccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHH
Confidence 0 0001122334578999999999999999999999999999999888888899999999999999999988888
Q ss_pred HHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
+.+|+.|+++++.+ .++..+.+.+++.++|++..+|+++..+.+...
T Consensus 3256 ~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~----------------------------- 3306 (5163)
T PRK12316 3256 FWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED----------------------------- 3306 (5163)
T ss_pred HHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhccc-----------------------------
Confidence 99999999999976 478899999999999999999999988765210
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCC--CCCCCCCcCCCC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE--GDNLSGHVGSPN 469 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~ 469 (617)
....+++|.+++||+++++++.++|. .+++++|+||+||++..++.... ......++|+|+
T Consensus 3307 ---------------~~~~~~lr~~~~gGe~l~~~~~~~~~--~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~ 3369 (5163)
T PRK12316 3307 ---------------AHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPI 3369 (5163)
T ss_pred ---------------cccCCcceEEEEccccCCHHHHHHHH--hCCcEeeccCCCccEeeEeEEeccCCCCCCCccceec
Confidence 00114899999999999999999998 47899999999999987665433 224567899999
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC------CCeeeecceEEEecCCcEEEEec
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++++++|+| ++++.++.|. .|||+|+|+++++||+|+|++|++.|.. ++||+|||+|++++||.|+|+||
T Consensus 3370 ~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR 3445 (5163)
T PRK12316 3370 ANRACYILD-GSLEPVPVGA---LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGR 3445 (5163)
T ss_pred CCCEEEEEC-CCCCCCCCCC---CceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecc
Confidence 999999999 6778888887 8999999999999999999999999954 36999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCH------HHHHHHHHHcCCCCChhhhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQ------DALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~------~~~~~~~~~~~~~~~~~~~~ 613 (617)
+|++||+ +|++|+|.|||+.|.++|+|.+++|++.. .+.++|+|+++. +.++++++++...+++|..+
T Consensus 3446 ~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~-~~~l~a~vv~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~ 3519 (5163)
T PRK12316 3446 VDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVD-GRQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHL 3519 (5163)
T ss_pred cCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEcc-CCeEEEEEEcCCcCcccHHHHHHHHHhhCCcccCccee
Confidence 9999998 89999999999999999999999999987 778999999853 67899999887778777543
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=504.70 Aligned_cols=448 Identities=18% Similarity=0.210 Sum_probs=363.8
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
++.+.|.+.++.+|+++|+... + +.+||+||.+++.++|..|.+.|+++|++|+|+++|+.+|+++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5788999999999999998754 3 249999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHH
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (617)
++|++++|+++.++.+++.++++.++++.++++........ ... ++.++. ..++
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~-~~~~~~------------------~~~~ 125 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQ-IITLSA------------------LEQA 125 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-------CCc-eEEchH------------------hhhh
Confidence 99999999999999999999999999999999876432211 111 111110 1111
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHH
Q 007119 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (617)
Q Consensus 240 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l 319 (617)
...... ........++++++|+|||||||.||+|+++|+++.....+....+.+..+|++++.+|++|.+++...+.++
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l 204 (502)
T TIGR01734 126 ETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL 204 (502)
T ss_pred hhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence 111111 1112234678999999999999999999999999998888777778888999999999999999988888899
Q ss_pred HhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 320 YSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 320 ~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
..|+++++++ .++..+++.++++++|.+.++|.+++.+.....
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~--------------------------------- 251 (502)
T TIGR01734 205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN--------------------------------- 251 (502)
T ss_pred HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc---------------------------------
Confidence 9999999876 478999999999999999999999876643100
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCC-----CCCCCCCcCCCC
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVGSPN 469 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~ 469 (617)
......++++.+++||++++.++.+.+.+.+ ++++++.||+||+++.++.... ......++|.|.
T Consensus 252 ---------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~ 322 (502)
T TIGR01734 252 ---------FNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAK 322 (502)
T ss_pred ---------cccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccccc
Confidence 0001114899999999999999999999887 7899999999998754433211 123346799999
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc---CCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
++++++|+| +++..++.++ .|||+++|+.++.||+++++.|.+.| +.++||+|||+|++|++ +++++||.+|
T Consensus 323 ~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d 397 (502)
T TIGR01734 323 PDMNLFIMD-EEGEPLPEGE---KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDF 397 (502)
T ss_pred CCCEEEEEC-CCCCCCCCCC---eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccC
Confidence 999999999 4456666665 89999999999999999999998876 23469999999999976 9999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeC--C--CCeEEEEEEeCH----------HHHHHHHHHcCCCCChhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--F--NSALVAIVSVDQ----------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~--~--~~~~va~vv~~~----------~~~~~~~~~~~~~~~~~~ 611 (617)
+|++ +|++|+|++||+.+.++|.|.+++|++.. . .+.++++|++++ .++.++++++...+.+|.
T Consensus 398 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~ 475 (502)
T TIGR01734 398 QIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPR 475 (502)
T ss_pred eEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCc
Confidence 9997 89999999999999999999999999843 1 257889998854 446677776655455553
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=501.40 Aligned_cols=455 Identities=20% Similarity=0.177 Sum_probs=355.4
Q ss_pred HHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEE
Q 007119 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166 (617)
Q Consensus 87 ~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~v 166 (617)
.+++++|+++|+.+. +.. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 456789999999764 221 4699999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccC
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (617)
|+++.++++++.++++++++++++++............. ....+.+.... .....+++.....
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~--- 140 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI-----------DGFGSFEAALAGA--- 140 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc-----------cccccHHHHhccc---
Confidence 999999999999999999999999986543322222111 11122222110 0112344332211
Q ss_pred CCCCCCCCCCCeEEEEeccCCCCCccEEEe--cHHHHHHHHH----hhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHH
Q 007119 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (617)
Q Consensus 247 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~--th~~l~~~~~----~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~ 320 (617)
.+ .....+++++|+|||||||.||||++ +|.++..... .....+.+..+|++++.+|++|.+++......+.
T Consensus 141 -~~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 141 -GP-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred -CC-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 01 11122357999999999999999995 5565543211 1122356788999999999999998766555677
Q ss_pred hCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhH
Q 007119 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (617)
Q Consensus 321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 399 (617)
.|+++++.+ +++..+++.|+++++|++.++|+++..+........
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------- 264 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR---------------------------------- 264 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------------
Confidence 899998877 789999999999999999999999988865210000
Q ss_pred HhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEEEee
Q 007119 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (617)
Q Consensus 400 l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd 478 (617)
+.....++|.+++||+++++++.+.+++.++.++++.||+||+++++...... ....+++|+|+++ +++|+|
T Consensus 265 ------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d 337 (501)
T PRK13390 265 ------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD 337 (501)
T ss_pred ------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC
Confidence 00001378999999999999999999998899999999999998655433222 2456789999999 799999
Q ss_pred cCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC--CCeeeecceEEEecCCcEEEEecCCCeeecCCeeee
Q 007119 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (617)
Q Consensus 479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~--~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i 556 (617)
+++..++.|+ .|||+|+|++++.||+++|+.|++.|.. +||++|||+|++|+||++++.||.||+||+ +|++|
T Consensus 338 -~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v 412 (501)
T PRK13390 338 -DDGNELPAGR---IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNI 412 (501)
T ss_pred -CCCCCCCCCC---ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-CCeee
Confidence 5667777776 8999999999999999999999998743 689999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHcCCCCChhhhh
Q 007119 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~~~~~~~~~~~~ 613 (617)
+|.+||+++.+||+|.+++|++.++. +.++++|++.+ +++.++++++...+++|..+
T Consensus 413 ~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~ 481 (501)
T PRK13390 413 YPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSV 481 (501)
T ss_pred CHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEE
Confidence 99999999999999999999998754 57888887532 36778888876556666543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-58 Score=545.58 Aligned_cols=466 Identities=24% Similarity=0.268 Sum_probs=366.6
Q ss_pred CCCCCHHHHHHHHHHhcCC-CccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
+...++.+.|.+.++++|+ +.++.+. ++ +.+||+||.++++++|+.|.+ |+++||+|+++++|++||+++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 3457889999999999875 5555421 12 359999999999999999975 999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHH--HhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l--~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
++||+++|++++|++++++++++.++++++++++++++.+..+.. .+....++....++.+++...... .
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~ 770 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------L 770 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------h
Confidence 999999999999999999999999999999999999987644321 111112222334454443211000 0
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
...+.+....... ..+.+...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++
T Consensus 771 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 849 (1140)
T PRK06814 771 ADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGL 849 (1140)
T ss_pred HHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHH
Confidence 0011111111111 111123578999999999999999999999999999888877777888999999999999999998
Q ss_pred HH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 313 AN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
.. .+.++..|+++++.+ .+...+.+.++++++|++.++|++++.+.+...
T Consensus 850 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--------------------------- 902 (1140)
T PRK06814 850 TGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--------------------------- 902 (1140)
T ss_pred HHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---------------------------
Confidence 55 567899999999876 466778899999999999999999887654200
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (617)
....+++|.+++||+++++++.+.+.+.+++++++.||+||++..++...+.+...+++|+|.
T Consensus 903 -----------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 965 (1140)
T PRK06814 903 -----------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLL 965 (1140)
T ss_pred -----------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccC
Confidence 000148999999999999999999999999999999999999877665544456678999999
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
|++++++++.++ .+ +.|||+++|++++.|||++++.+......+|||+|||+|++|+||+++++||.||+||
T Consensus 966 ~g~~~~~~~~~~-----~~---~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~ 1037 (1140)
T PRK06814 966 PGIEYRLEPVPG-----ID---EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAK 1037 (1140)
T ss_pred CCCeEEEeecCC-----CC---CceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeee
Confidence 999999987442 23 3799999999999999998754322223689999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe---CHHHHHHHHHHcCC-CCChhhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV---DQDALKAWAASEGI-QSLAPSD 612 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~---~~~~~~~~~~~~~~-~~~~~~~ 612 (617)
+ +|++|+|.|||+++.+||.|.+++|++.+++ +.+++++.. +.+++.++++++.+ ++++|..
T Consensus 1038 ~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~ 1106 (1140)
T PRK06814 1038 I-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAAGASELMVPAE 1106 (1140)
T ss_pred e-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHcCCCcccCCcE
Confidence 6 8999999999999999999999999997754 456666542 45788999987644 3566643
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=508.71 Aligned_cols=454 Identities=22% Similarity=0.326 Sum_probs=357.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.+++.++.++|...++++|+..++ +.....++.+||.||++++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~ 90 (579)
T PRK09192 17 YADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA 90 (579)
T ss_pred ccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence 457789999999999998876654 22222357799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCc
Q 007119 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~ 227 (617)
++||+++|++++|+++... .+++.++++.+++++++++....+.+.+.....+ . +
T Consensus 91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~-~--~--------------- 152 (579)
T PRK09192 91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP-L--L--------------- 152 (579)
T ss_pred HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc-c--c---------------
Confidence 9999999999999987443 6899999999999999999876665554332111 0 0
Q ss_pred cCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc-CcccCCCcEEEEeCCh
Q 007119 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPL 306 (617)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~lPl 306 (617)
...++.++...... ........++++++|+|||||||.||||+++|++++..+..... .+++.++|++++++|+
T Consensus 153 ----~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (579)
T PRK09192 153 ----HVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPF 227 (579)
T ss_pred ----ceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCC
Confidence 11233333322211 11223456789999999999999999999999999998887776 6888999999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 007119 307 AHIYERANQ-VMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (617)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (617)
+|.+++... +.++..|+++.+.. .++..+++.+.++++|+++..|..+..+.......
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~---------------- 291 (579)
T PRK09192 228 YHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK---------------- 291 (579)
T ss_pred CCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----------------
Confidence 999998864 45688899987765 37889999999999998776554444433211000
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC------Cceecccccccccccccc
Q 007119 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~ 454 (617)
..+....+++|.+++||+++++++.+.+.+.+. ..+++.||+||+++.++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~ 348 (579)
T PRK09192 292 -----------------------DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSF 348 (579)
T ss_pred -----------------------cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEec
Confidence 000001148999999999999999999988773 249999999999865554
Q ss_pred CCCCC----------------------------CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcccccc
Q 007119 455 LDEGD----------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (617)
Q Consensus 455 ~~~~~----------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~G 506 (617)
..... ...+++|.|+|+++++|+| +++..++.++ .|||+++|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~---~Gel~i~g~~~~~g 424 (579)
T PRK09192 349 SPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERV---VGHICVRGPSLMSG 424 (579)
T ss_pred cCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCC---EEEEEecCCchhhh
Confidence 32211 0125799999999999999 5556666665 89999999999999
Q ss_pred ccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcc--eEEEEeeCCC--
Q 007119 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG--QCFVYGDSFN-- 582 (617)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~--~~~V~g~~~~-- 582 (617)
||++ +.+.+.+..+|||+|||+|++ ++|+++|+||+||+||+ +|++|+|.|||+++.+||+|. +|+|++.+++
T Consensus 425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~ 501 (579)
T PRK09192 425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG 501 (579)
T ss_pred hcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC
Confidence 9999 678888888999999999999 99999999999999997 899999999999999999998 8999987654
Q ss_pred CeEEEEEEeC------HHHHHHHHHHc
Q 007119 583 SALVAIVSVD------QDALKAWAASE 603 (617)
Q Consensus 583 ~~~va~vv~~------~~~~~~~~~~~ 603 (617)
+.++++|++. .+++.++++++
T Consensus 502 ~~~~~~v~~~~~~~~~~~~l~~~~~~~ 528 (579)
T PRK09192 502 EKIVLLVQCRISDEERRGQLIHALAAL 528 (579)
T ss_pred eeEEEEEEecCCChHHHHHHHHHHHHH
Confidence 4677777752 25667777654
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=500.24 Aligned_cols=476 Identities=24% Similarity=0.317 Sum_probs=373.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..++.++|.+.++++|+++|+... + +++||.||.++++++|..|.+ .|+++|++|+|+++|+++|+++++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 359999999999999999985 899999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCC--CCC----------
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ--IPS---------- 224 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~--~~~---------- 224 (617)
||+++|++++|+++.++.+++.++++.++++.++++.+..+.+.+..... ..+.++........ ...
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYI 171 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEecccccccccccccccchhhhc
Confidence 99999999999999999999999999999999999876655554433221 22333322110000 000
Q ss_pred ---CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCc---ccCCCc
Q 007119 225 ---LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (617)
Q Consensus 225 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d 298 (617)
..........++.+....+...........++++++|+|||||||.||||+++|++++..+......+ ....++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 251 (560)
T PRK08974 172 KRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKE 251 (560)
T ss_pred ccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCcc
Confidence 00000011123333333332211122335678999999999999999999999999987665433221 234567
Q ss_pred EEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHH
Q 007119 299 VYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (617)
Q Consensus 299 ~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~ 375 (617)
.+++.+|++|.+++.. .+.++..|+++++.. .++..+++.++++++|.+.++|.+++.+.....
T Consensus 252 ~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------- 318 (560)
T PRK08974 252 LVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE------------- 318 (560)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC-------------
Confidence 8899999999999766 456788898877764 578889999999999999999999998865210
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccC
Q 007119 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (617)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 455 (617)
......+++|.+++||+++++++.+.|++.+|+++++.||+||++..++..
T Consensus 319 -----------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~ 369 (560)
T PRK08974 319 -----------------------------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVN 369 (560)
T ss_pred -----------------------------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeecc
Confidence 000011489999999999999999999998899999999999998766544
Q ss_pred CCC-CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec
Q 007119 456 DEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (617)
Q Consensus 456 ~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (617)
... ....+++|.|+++++++|+| +++..++.++ .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++
T Consensus 370 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~ 444 (560)
T PRK08974 370 PYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGE---PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE 444 (560)
T ss_pred CCCCcccCCccccCcCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC
Confidence 322 24467899999999999999 4566677776 89999999999999999999999998 789999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHcCCC
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASEGIQ 606 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~~~~~~~~ 606 (617)
+|+++++||++|+|++ +|++|+|.+||+.+.++|+|.+++|++.++. +.++++|+. +.+++.++++++...
T Consensus 445 ~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~~l~~ 523 (560)
T PRK08974 445 EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRRHLTG 523 (560)
T ss_pred CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHhhccc
Confidence 9999999999999997 7999999999999999999999999997754 356666664 346788888877655
Q ss_pred CChhh
Q 007119 607 SLAPS 611 (617)
Q Consensus 607 ~~~~~ 611 (617)
+.+|.
T Consensus 524 ~~~P~ 528 (560)
T PRK08974 524 YKVPK 528 (560)
T ss_pred ccCCc
Confidence 65554
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=499.23 Aligned_cols=475 Identities=22% Similarity=0.291 Sum_probs=366.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.+.|++.++.+|+++|+... + ..+||+||.+++.++|.+|.+.|+++||+|+|+++|+++++++++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 58899999999999999999753 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++.+++.+++++++++.++++.+..+.+.+.....+..+. +.++...... .....+...++++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~ 164 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEY---PGGRFIGALDYEA 164 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCcccc---ccCCCcccccHHH
Confidence 99999999999999999999999999999999998887766655443333222 2222111100 0011223345666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
+............+.+.+++++|+|||||||.||||+++|+++............+..++++++.+|++|.+++...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~ 244 (545)
T PRK08162 165 FLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTV 244 (545)
T ss_pred HhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHH
Confidence 65432221111122345689999999999999999999999987666555445667888999999999999998765544
Q ss_pred -HHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 319 -VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 319 -l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
+..|.++.+...++..+++.++++++|++.++|.+++.|.+.....
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------- 291 (545)
T PRK08162 245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW--------------------------------- 291 (545)
T ss_pred HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------
Confidence 4444444444489999999999999999999999999886521000
Q ss_pred hHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-----------CCCCCcC
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSGHVG 466 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG 466 (617)
+..+ .+.+.+++||+++++++.++++.. ++++++.||+||+++.+....... ...+++|
T Consensus 292 --------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (545)
T PRK08162 292 --------RAGI-DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361 (545)
T ss_pred --------ccCC-ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence 0001 245556789999999999998874 899999999999865444321110 1234567
Q ss_pred CCCc-CeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCC
Q 007119 467 SPNA-ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 467 ~p~~-~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
.+.+ +.+++++|++++..++.+.. ..|||+|+|+.++.|||++++.|.+.| .+|||+|||+|++|+||+++++||.|
T Consensus 362 ~~~~~~~~~~i~d~~~~~~~~~~g~-~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~ 439 (545)
T PRK08162 362 VRYPLQEGVTVLDPDTMQPVPADGE-TIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSK 439 (545)
T ss_pred cccCCcceEEEEcCCCCcccCCCCC-ceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEeccc
Confidence 7665 44688888666665554210 269999999999999999999999999 78999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhhh
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+||+ +|++|+|.+||+.+.++|+|.+++|++.++. +.++++|++ +..++.++++++...+..|..
T Consensus 440 ~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 514 (545)
T PRK08162 440 DIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKA 514 (545)
T ss_pred ceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcE
Confidence 99995 8999999999999999999999999997643 468888874 356788888876655555543
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=495.38 Aligned_cols=460 Identities=20% Similarity=0.209 Sum_probs=368.7
Q ss_pred HHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 007119 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (617)
Q Consensus 86 ~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (617)
...++++||++|+.+. ++. +.+||.||.+++.++|++|.+.|+++|++|+++++|+++|+++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4567889999999763 222 459999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCcc
Q 007119 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (617)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (617)
+|+++.++.+++.++++.++++.++++......+.+....++.....+.++.... ......+++.....
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 145 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL-- 145 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCC---------CcccccHHHHhcCC--
Confidence 9999999999999999999999999998877766665555555555555543111 01123344433211
Q ss_pred CCCCCCCCCCCCeEEEEeccCCCCCccEEEe--cHHHHHHHH---HhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHH
Q 007119 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASV---AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (617)
Q Consensus 246 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~--th~~l~~~~---~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~ 320 (617)
+ .......++.++++|||||||.||||++ +|.++.... ......+.+..++++++.+|++|.+++...+.++.
T Consensus 146 -~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~ 223 (511)
T PRK13391 146 -P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIR 223 (511)
T ss_pred -C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 1 1111234567899999999999999995 566654322 22334466788999999999999999887788899
Q ss_pred hCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhH
Q 007119 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (617)
Q Consensus 321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 399 (617)
.|+++++.+ +++..+++.++++++|++.++|.++..+........
T Consensus 224 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------------- 269 (511)
T PRK13391 224 LGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------------- 269 (511)
T ss_pred cCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------------
Confidence 999999987 799999999999999999999999987754210000
Q ss_pred HhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEEEee
Q 007119 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (617)
Q Consensus 400 l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd 478 (617)
+....+++|.+++||+++++++.+.+++.+|..+++.||+||+++++...... ....+++|.|+++ +++|+|
T Consensus 270 ------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d 342 (511)
T PRK13391 270 ------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD 342 (511)
T ss_pred ------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC
Confidence 00011489999999999999999999998899999999999998765443222 2456799999999 699998
Q ss_pred cCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC-CeeeecceEEEecCCcEEEEecCCCeeecCCeeeec
Q 007119 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557 (617)
Q Consensus 479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~ 557 (617)
+++...+.|. .|||+++|+ ++.|||++++.+++.+..+ |||+|||+|+++++|.+++.||.||++|. +|++|+
T Consensus 343 -~~~~~~~~g~---~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~ 416 (511)
T PRK13391 343 -DDGAELPPGE---PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIY 416 (511)
T ss_pred -CCCCCCCCCC---ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-CCEEEC
Confidence 5566666665 899999999 8999999999999988655 99999999999999999999999999996 899999
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC---------HHHHHHHHHHcCCCCChhhh
Q 007119 558 AEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD---------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~~~~~~~~~~~~~~~~~~~ 612 (617)
|.+||+++.+||.|.+++|++.++. +.+++++++. .+++.+|++++...++.|..
T Consensus 417 ~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 483 (511)
T PRK13391 417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRS 483 (511)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcE
Confidence 9999999999999999999997644 4677888752 25688999887665655543
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=495.27 Aligned_cols=401 Identities=29% Similarity=0.443 Sum_probs=320.5
Q ss_pred HHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCe
Q 007119 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164 (617)
Q Consensus 85 l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v 164 (617)
|+++|+++||++|+++ .+.+++||+||.++++++|.+|.+.|+++||+|+|+++|+++|+++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 6899999999999986 12367999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhccccEEEe----cccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHH
Q 007119 165 SVPLYDTLGPDAVKYIVNHASVQAVFC----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240 (617)
Q Consensus 165 ~vpl~~~~~~~~l~~il~~~~~~~vi~----~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (617)
++|+++.++.+++.+++++++++++|+ +......+.+..........++.++...... .......
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 141 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPK-----------KEALKSA 141 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTT-----------CHHHHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccc-----------ccccccc
Confidence 999999999999999999999999997 2222333444443334455666665422100 0000000
Q ss_pred hcCccCCCCCCC-CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh--cCcccCCCcEEEEeCChHHHHHH-HHHH
Q 007119 241 SQGRSNLQPFSP-PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYER-ANQV 316 (617)
Q Consensus 241 ~~~~~~~~~~~~-~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~lPl~h~~~~-~~~~ 316 (617)
....... .+ ..++++++++|||||||.||+|++||+++++.+..+. ...+++ |++++++|++|.+++ ...+
T Consensus 142 ~~~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~ 216 (417)
T PF00501_consen 142 SLSDEPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL 216 (417)
T ss_dssp HHCHCSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred ccccccc---cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence 1000000 00 1578999999999999999999999999999887754 223333 699999999999999 5678
Q ss_pred HHHHhCcEEEEecCC----hhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 317 MTVYSGVAVGFYQGD----NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 317 ~~l~~G~~~~~~~~~----~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+++.|+++++.+.. +..+++.+++++||+++++|++++.+.+..... .
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~-------------------------- 269 (417)
T PF00501_consen 217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T-------------------------- 269 (417)
T ss_dssp HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H--------------------------
T ss_pred ccccccccccccccccccccccchhccccccccccccccccccccccccccc-c--------------------------
Confidence 899999999999832 467899999999999999999999987621110 0
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccccccccCCC--CCCCCCCcCCCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDE--GDNLSGHVGSPN 469 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~ 469 (617)
+.+....+++|.+++||+++++++.+++++.++. ++++.||+||++.+++.... .....+++|.|+
T Consensus 270 -----------~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 338 (417)
T PF00501_consen 270 -----------KISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPL 338 (417)
T ss_dssp -----------HGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEES
T ss_pred -----------cccccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccc
Confidence 0000011469999999999999999999999987 89999999999988875522 225778999999
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
++++++|+|.+++..++.++ .|||+|+|++++.||+++|+.|++.|+++|||+|||+|++|+||+|+++||.||+||
T Consensus 339 ~~~~~~ivd~~~~~~~~~g~---~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~ 415 (417)
T PF00501_consen 339 PGVEVKIVDPNTGEPLPPGE---PGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIK 415 (417)
T ss_dssp TTEEEEEECTTTSSBESTTS---EEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEE
T ss_pred cccccccccccccccccccc---cccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEE
Confidence 99999999977688888776 899999999999999999999999997668999999999999999999999999999
Q ss_pred c
Q 007119 550 L 550 (617)
Q Consensus 550 l 550 (617)
+
T Consensus 416 ~ 416 (417)
T PF00501_consen 416 V 416 (417)
T ss_dssp E
T ss_pred e
Confidence 6
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=492.64 Aligned_cols=468 Identities=21% Similarity=0.232 Sum_probs=373.0
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
|+.++|.+.++++||++|+.+. + +.+||.||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 7999999999999999999763 2 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHH
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (617)
++|++++|+++.++.+++.++++++++++++++......+.+....++..+.++.++...... .....++++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND------LLPGAVDYEDA 148 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc------cCCccccHHHH
Confidence 999999999999999999999999999999999887777777666667777777776532111 00124567777
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---------ccc------CCCcEEEEeC
Q 007119 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---------TKF------YPSDVYISYL 304 (617)
Q Consensus 240 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~l 304 (617)
+...... ..... ..+|.++|+|||||||.||||++||+++.......... ..+ ..+++++..+
T Consensus 149 ~~~~~~~-~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (533)
T PRK07798 149 LAAGSPE-RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP 226 (533)
T ss_pred HhccCCc-CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence 6543321 11112 23355789999999999999999999987654432111 111 5678999999
Q ss_pred ChHHHHHHHHHHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHH-HHHHHHhhcCCchHHHHHHHHH
Q 007119 305 PLAHIYERANQVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIY-AGITSAVRTSGGLRERLFNAAY 380 (617)
Q Consensus 305 Pl~h~~~~~~~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~-~~~~~~~~~~~~~~~~~~~~a~ 380 (617)
|++|.+++...+.+++.|+++++.+ .++..+++.++++++|.+.++|..+...+ ..+.
T Consensus 227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~------------------ 288 (533)
T PRK07798 227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE------------------ 288 (533)
T ss_pred chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc------------------
Confidence 9999999988888999999999987 58999999999999999999998775432 2110
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC
Q 007119 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD 459 (617)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~ 459 (617)
+.......++|.+++||+++++++.+++++.+ ++.+++.||+||++.........
T Consensus 289 -----------------------~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~- 344 (533)
T PRK07798 289 -----------------------ARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK- 344 (533)
T ss_pred -----------------------ccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC-
Confidence 00001125899999999999999999999988 78999999999996554433221
Q ss_pred CCCCCcC--CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC---CCeeeecceEEEec
Q 007119 460 NLSGHVG--SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMWIP 534 (617)
Q Consensus 460 ~~~~~vG--~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~---~gw~~TGDlg~~~~ 534 (617)
.....| .+.++.+++|+| +++..++.+.+. .|||+ +++.++.|||++++.|++.|.. ++||+|||+|++|+
T Consensus 345 -~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~-~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~ 420 (533)
T PRK07798 345 -GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGE-IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA 420 (533)
T ss_pred -CCccCCCCccCCCceEEEEC-CCCCCCCCCCCC-eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC
Confidence 122344 788999999999 455566666511 26665 5668999999999999998842 46999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCC
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGI 605 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~ 605 (617)
||++++.||+||+||. +|++|+|++||+++.++|.|.+++|+|.++. +.++++|++ +.+++.++++++..
T Consensus 421 ~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~ 499 (533)
T PRK07798 421 DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLA 499 (533)
T ss_pred CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcc
Confidence 9999999999999995 8999999999999999999999999997643 467788874 45778899988755
Q ss_pred CCChhh
Q 007119 606 QSLAPS 611 (617)
Q Consensus 606 ~~~~~~ 611 (617)
.+.+|.
T Consensus 500 ~~~~P~ 505 (533)
T PRK07798 500 GYKVPR 505 (533)
T ss_pred cCCCCe
Confidence 565554
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=597.11 Aligned_cols=454 Identities=20% Similarity=0.239 Sum_probs=381.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...++.++|.+.++++||++|+.+. ++ .+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~---~~------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 1198 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVWD---GG------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEEC---Cc------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999865 43 4999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++|||++.++.+++.++++++++++++++......+.. .... ..+.++...
T Consensus 1199 lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGV-SAIALDSLH---------------- 1257 (4334)
T ss_pred HHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCc-eEEeecccc----------------
Confidence 9999999999999999999999999999999999998765443221 1111 111111110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
........+.....++++++++|||||||.||||+++|+++.+.+.+....+.+.++|++++..|++|..++...
T Consensus 1258 -----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~ 1332 (4334)
T PRK05691 1258 -----LDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWEC 1332 (4334)
T ss_pred -----ccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 000000112223467999999999999999999999999999998888888899999999999999999998888
Q ss_pred HHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
+.+|+.|+++++.+ .++..+++.++++++|++.++|++++.+.....
T Consensus 1333 ~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~----------------------------- 1383 (4334)
T PRK05691 1333 FWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL----------------------------- 1383 (4334)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-----------------------------
Confidence 89999999999975 588999999999999999999999988764200
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCC--CCCCCCCCcCCC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD--EGDNLSGHVGSP 468 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p 468 (617)
....++||.+++||+++++++.+.|...+ +++++|.||+||++..++... ..+...+++|+|
T Consensus 1384 ---------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p 1448 (4334)
T PRK05691 1384 ---------------AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRP 1448 (4334)
T ss_pred ---------------cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccce
Confidence 00114899999999999999999998887 688999999999987655422 223456789999
Q ss_pred CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC-------CCeeeecceEEEecCCcEEEE
Q 007119 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLKII 541 (617)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~i~ 541 (617)
+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|.. .+||+|||+|++++||.|+|+
T Consensus 1449 ~~~~~~~i~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~ 1524 (4334)
T PRK05691 1449 LGNVLCRVLD-AELNLLPPGV---AGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYL 1524 (4334)
T ss_pred eCCCEEEEEC-CCCCCCCCCC---ceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEe
Confidence 9999999999 6677788776 8999999999999999999999999843 349999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeC------HHHHHHHHHHcCCCCChhhhh
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVD------QDALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~~ 613 (617)
||+|++||+ +|++|+|.|||+++.+||+|.+|+|++... ...++|++++. .++++++++++...+++|..+
T Consensus 1525 GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~ 1603 (4334)
T PRK05691 1525 GRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQL 1603 (4334)
T ss_pred cccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEE
Confidence 999999998 899999999999999999999999997653 36799999863 358999999987777777543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-57 Score=493.34 Aligned_cols=447 Identities=19% Similarity=0.215 Sum_probs=366.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.++|++.++.+|+++++... + +.+||.||.+++.++|.+|.+.|+++|++|+++++|+.+|+++++||
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~ 72 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA 72 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 57889999999999999998753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++.+++.++++.+++++++++...... .. .+..+.+++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------------~~~~~~~~~ 123 (503)
T PRK04813 73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------IL----------------------GIPVITLDE 123 (503)
T ss_pred HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------cc----------------------CCcEEehHH
Confidence 9999999999999999999999999999999998654100 00 011223333
Q ss_pred HHhcC--ccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 239 LLSQG--RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 239 l~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+.... ...........++++++++|||||||.||+|.+||+++..........+.+..++++++.+|++|..+....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 203 (503)
T PRK04813 124 LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLY 203 (503)
T ss_pred hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHH
Confidence 32211 1111112345678999999999999999999999999998887777778888999999999999999987778
Q ss_pred HHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 317 ~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.++..|+++++++ .++..+++.++++++|++.++|.+++.+.....
T Consensus 204 ~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------------------------ 253 (503)
T PRK04813 204 PTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS------------------------------ 253 (503)
T ss_pred HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc------------------------------
Confidence 8999999999877 478999999999999999999999876543210
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCC--C---CCCCCCcC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE--G---DNLSGHVG 466 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~--~---~~~~~~vG 466 (617)
..+...+++|.++++|+++++++.+++.+.+ ++.+++.||+||++..++.... . .....++|
T Consensus 254 ------------~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g 321 (503)
T PRK04813 254 ------------FNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG 321 (503)
T ss_pred ------------cCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence 0011114899999999999999999999988 7889999999998754432211 1 13455799
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC---CCCeeeecceEEEecCCcEEEEec
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
.|.++++++|+| +++..++.+. .|||+++|++++.|||++++.|.+.|. .++||+|||+|++ ++|++++.||
T Consensus 322 ~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR 396 (503)
T PRK04813 322 YAKPDSPLLIID-EEGTKLPDGE---QGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR 396 (503)
T ss_pred ccCCCCEEEEEC-CCCCCCCCCC---ceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence 999999999999 5566666665 899999999999999999999998872 2359999999999 9999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHcCCCCChh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASEGIQSLAP 610 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~~~~~~~~~~~~~~~~ 610 (617)
.||+||+ +|++|+|.+||+.+.++|+|.+++|+|.+++ +.++++|++++ +.+.++++++...+.+|
T Consensus 397 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P 475 (503)
T PRK04813 397 IDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIP 475 (503)
T ss_pred ccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCC
Confidence 9999997 8999999999999999999999999986543 57889998754 23677887664445554
Q ss_pred h
Q 007119 611 S 611 (617)
Q Consensus 611 ~ 611 (617)
.
T Consensus 476 ~ 476 (503)
T PRK04813 476 R 476 (503)
T ss_pred e
Confidence 3
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-58 Score=489.28 Aligned_cols=390 Identities=18% Similarity=0.150 Sum_probs=320.9
Q ss_pred EeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEec
Q 007119 114 MTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (617)
Q Consensus 114 ~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~ 192 (617)
+.|+||.+++.++|++|.+.|+ ++|++|+++++|++|++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 6899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred ccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCcc
Q 007119 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (617)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 272 (617)
.+..... ... . . .......++++++++|||||||.||
T Consensus 100 ~~~~~~~---------------~~~------------------------~--~--~~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 100 DQLKLSH---------------PPP------------------------L--P--SQGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred Ccccccc---------------CCC------------------------C--C--ccccCCCCCCcEEEEeCCCCCCCCc
Confidence 6532100 000 0 0 0001235689999999999999999
Q ss_pred EEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC-ChhhHHHHHHhhCCeEEeech
Q 007119 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351 (617)
Q Consensus 273 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~-~~~~l~~~i~~~~~t~~~~vP 351 (617)
||++||+++++.+......+.+.+ ++.++.+|++|.+++...+.+++.|+++++.+. +..........+++|++.++|
T Consensus 137 gV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP 215 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP 215 (452)
T ss_pred EEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence 999999999888877666556654 467889999999999878889999999998762 223223344578899999999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHH
Q 007119 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431 (617)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~ 431 (617)
++++.+.+... ...+++|.+++||+++++++.+.+
T Consensus 216 ~~l~~l~~~~~---------------------------------------------~~l~~l~~i~~gG~~l~~~~~~~~ 250 (452)
T PRK07445 216 TQLQRLLQLRP---------------------------------------------QWLAQFRTILLGGAPAWPSLLEQA 250 (452)
T ss_pred HHHHHHHhhCh---------------------------------------------hhhhcceEEEECCccCCHHHHHHH
Confidence 99998765100 001489999999999999999988
Q ss_pred HHhhCCceeccccccccccccccCCCCC--CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccC
Q 007119 432 KICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (617)
Q Consensus 432 ~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~ 509 (617)
+. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|+ .+ ..|||+|+|+.++.|||+
T Consensus 251 ~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g---~~Gel~v~g~~~~~gY~~ 317 (452)
T PRK07445 251 RQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------AN---QTGNITIQAQSLALGYYP 317 (452)
T ss_pred Hh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CC---CcceEEEeCCccchhhcC
Confidence 76 4899999999999986554433332 345789999999999998 12 289999999999999998
Q ss_pred ChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEE
Q 007119 510 DEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALV 586 (617)
Q Consensus 510 ~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~v 586 (617)
++. +.+|||+|||+|++|+||+|+|.||+||+||. +|++|+|.+||+++.+||+|.+|+|+|.++. +.++
T Consensus 318 ~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~ 390 (452)
T PRK07445 318 QIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVT 390 (452)
T ss_pred Ccc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEE
Confidence 643 35799999999999999999999999999995 8999999999999999999999999998754 4788
Q ss_pred EEEEeC-----HHHHHHHHHHcCCCCChhhh
Q 007119 587 AIVSVD-----QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 587 a~vv~~-----~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+|++. .+++.++++++...++.|..
T Consensus 391 a~vv~~~~~~~~~~l~~~~~~~L~~~~~P~~ 421 (452)
T PRK07445 391 AIYVPKDPSISLEELKTAIKDQLSPFKQPKH 421 (452)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCcccCCeE
Confidence 988863 57889999987666666653
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=504.51 Aligned_cols=443 Identities=19% Similarity=0.249 Sum_probs=338.5
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
++.++|++++..+||++|+.+........+..+.+||+||.+++.++|++|.+.| .+||+|+|+++|+++|+++++||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 6889999999999999999865110011123467999999999999999999999 689999999999999999999999
Q ss_pred hcCCeEEecCC---CCCHHHHHHHHHhccccEEEecccchHHHHhhccCCC--CceEEEEECCCCCCCCCCCccCCceEe
Q 007119 160 AYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP--TVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 160 ~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~--~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++|++++|+++ .++.+++.++|+++++++++++.+..+.+.+...... ....++.++..
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 144 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------- 144 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc----------------
Confidence 99999999997 4578899999999999999999877666544322111 11112222110
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC-cc-----cCCCcEEEEeCChHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TK-----FYPSDVYISYLPLAH 308 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~lPl~h 308 (617)
++ ............++|+++|+|||||||.||||++||+++++.+...... +. ...++++++++|++|
T Consensus 145 ---~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 145 ---DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ---cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 00 0000011223457899999999999999999999999998876654332 11 356889999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHH-HHHHhhcCCchHHHHHHHHHH
Q 007119 309 IYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAG-ITSAVRTSGGLRERLFNAAYN 381 (617)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~-~~~~~~~~~~~~~~~~~~a~~ 381 (617)
.++++. .+.+++.|+++++.+ .++..+++.+++++++++ .+|..+..+... ....
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~----------------- 280 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD----------------- 280 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence 999876 667899999999886 278999999999999855 566654433221 0000
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC------CceeccccccccccccccC
Q 007119 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQL 455 (617)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~~ 455 (617)
.......+++|.+++||+++++++.+.|.+.|+ ..+++.||+||++..+...
T Consensus 281 ----------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 338 (578)
T PRK05850 281 ----------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATR 338 (578)
T ss_pred ----------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheecc
Confidence 000001147999999999999999999988773 3689999999987554432
Q ss_pred CCCCC-------------------------CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCC
Q 007119 456 DEGDN-------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (617)
Q Consensus 456 ~~~~~-------------------------~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~ 510 (617)
..... ....+|.|. +.+++++|.+++..++.++ .|||+|+|++++.|||++
T Consensus 339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~ 414 (578)
T PRK05850 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT---VGEIWVHGDNVAAGYWQK 414 (578)
T ss_pred CCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC---EEEEEEecCcccccccCC
Confidence 21110 011345553 5799999976677777776 999999999999999999
Q ss_pred hhhhhcccC-----------CCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEee
Q 007119 511 EIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579 (617)
Q Consensus 511 ~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~ 579 (617)
|+.|++.|. .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||+++.+||.+. ++|++.
T Consensus 415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~~v 491 (578)
T PRK05850 415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAISV 491 (578)
T ss_pred hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEEEe
Confidence 999999984 25799999999998 9999999999999997 899999999999999999954 777787
Q ss_pred CCC--CeEEEEEEeC
Q 007119 580 SFN--SALVAIVSVD 592 (617)
Q Consensus 580 ~~~--~~~va~vv~~ 592 (617)
++. +.++|+|++.
T Consensus 492 ~~~~~~~~~a~v~~~ 506 (578)
T PRK05850 492 PDDGTEKLVAIIELK 506 (578)
T ss_pred cCCCceEEEEEEEec
Confidence 654 5788988864
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=487.19 Aligned_cols=417 Identities=24% Similarity=0.291 Sum_probs=346.3
Q ss_pred CHHHHH-HHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 80 TTHDNF-VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 80 tl~~~l-~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
++.+.. .+.++++|+++|+... + +.+||.||.++++++|..|.+.|+++||+|+++++|+++|+++++||
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~ 73 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 344444 4558899999999742 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|++++|+++.++++++.+++++++++.++++.+... +.. +..+ .+..
T Consensus 74 ~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~----------------------~~~~ 123 (458)
T PRK09029 74 LQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSL----------------------HLQL 123 (458)
T ss_pred HHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------cccc----------------------cccc
Confidence 999999999999999999999999999999998765422 100 0000 0000
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
..........++++++++|||||||.||||++||++++..+......+.+.++|++++.+|++|.+++...+.+
T Consensus 124 ------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 197 (458)
T PRK09029 124 ------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRW 197 (458)
T ss_pred ------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHH
Confidence 00011223467899999999999999999999999999998888777888999999999999999998777778
Q ss_pred HHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 007119 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (617)
Q Consensus 319 l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d 398 (617)
+..|+++++.+. ..+++.+ .++|.+..+|+++..+......
T Consensus 198 l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------------- 238 (458)
T PRK09029 198 LYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------------- 238 (458)
T ss_pred HhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc-----------------------------------
Confidence 999999998653 5566766 4799999999999887652100
Q ss_pred HHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEee
Q 007119 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478 (617)
Q Consensus 399 ~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd 478 (617)
..++|.+++||+++++.+.+++... +++++++||+||++...+.... ....++|.|+++++++|++
T Consensus 239 -----------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~ 304 (458)
T PRK09029 239 -----------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD 304 (458)
T ss_pred -----------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC
Confidence 1379999999999999999998864 9999999999999865543322 2235699999999999975
Q ss_pred cCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeech
Q 007119 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558 (617)
Q Consensus 479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p 558 (617)
|||+|+|+.++.||+++++.+.... .+|||+|||+|++| ||+++|.||+||+||+ +|++|+|
T Consensus 305 ---------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p 366 (458)
T PRK09029 305 ---------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQP 366 (458)
T ss_pred ---------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceee-CCEEeCH
Confidence 8999999999999999998887654 78999999999999 9999999999999996 8999999
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 559 EKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
.+||+.+.+||+|.+++|++.++. +.++|+|++ +.+++.++++++...+++|..
T Consensus 367 ~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~P~~ 427 (458)
T PRK09029 367 EEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQQPVA 427 (458)
T ss_pred HHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhhchhccCCeE
Confidence 999999999999999999998765 578888885 457899999987666766643
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=517.40 Aligned_cols=461 Identities=16% Similarity=0.178 Sum_probs=345.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...++.++|++.++++||++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45678999999999999999999763 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++|++|. +++.+++++++++++|++.+..+.+.+. ...+++++......... ........
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~~~~--~~~~~~~~ 583 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESRDLDL--PDDADVID 583 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccccccC--Ccchhhhh
Confidence 9999999999999985 6899999999999999987766654331 13455554321100000 00001111
Q ss_pred HHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 007119 236 YSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 236 ~~~l~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
++++.......+ ....+..++|+++|+|| ||||.||++.++|.+...........+.+.++|++++.+|++|++++.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~ 662 (994)
T PRK07868 584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL 662 (994)
T ss_pred hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence 222111100000 01112246899999999 588888888888877665544444557788999999999999999998
Q ss_pred HHHHH-HHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 314 NQVMT-VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 314 ~~~~~-l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
..+.+ +..|+++++.+ +++..+++.|+++++|+++++|++++.+.+...
T Consensus 663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~----------------------------- 713 (994)
T PRK07868 663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA----------------------------- 713 (994)
T ss_pred HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC-----------------------------
Confidence 76654 55555565555 799999999999999999999999988865200
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC-CceeccccccccccccccCCCCCCCCCCcCCCCc
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (617)
......+++|.++ | +.+++++.+.+.+.|+ ++++++||+||++...+. ....+.+++|+|+|
T Consensus 714 -------------~~~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~p 776 (994)
T PRK07868 714 -------------FVLHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLP 776 (994)
T ss_pred -------------CccCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccC
Confidence 0000014789876 3 3499999999999886 789999999998754432 22346689999999
Q ss_pred Ce-EEEEeec----------CCC--CCCCCCCCCCcceEEEeCccccccccCChhhh--hcccC-CCCeeeecceEEEec
Q 007119 471 AC-EIKLVDV----------PEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT--KEVID-EDGWFHTGDIGMWIP 534 (617)
Q Consensus 471 ~~-~v~ivd~----------~~~--~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t--~~~~~-~~gw~~TGDlg~~~~ 534 (617)
++ +++|.+. +++ +.++.| +.|||+++|+.. + +|+.+ +..|. .||||+|||+|++|+
T Consensus 777 g~~~v~i~~~d~~~g~li~d~~G~~~~~~~g---e~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~ 848 (994)
T PRK07868 777 GAGRVELAAYDPEHDLILEDDRGFVRRAEVN---EVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDD 848 (994)
T ss_pred CCCceeEEEecCcCCceeecCCceEEEcCCC---CceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcC
Confidence 98 7777521 111 223334 489999999864 3 45544 33453 489999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEe------CHHHHHHHHHHcCCC
Q 007119 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSV------DQDALKAWAASEGIQ 606 (617)
Q Consensus 535 dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~------~~~~~~~~~~~~~~~ 606 (617)
||+|+|+||+||+||+ +|++|+|+|||++|.+||.|.+|+|+|.+++ +.++|+|++ +++++++|+++ ...
T Consensus 849 dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~ 926 (994)
T PRK07868 849 DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALAS-LPV 926 (994)
T ss_pred CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHh-CCC
Confidence 9999999999999996 7889999999999999999999999998754 478899985 35789999985 445
Q ss_pred CChhhhh
Q 007119 607 SLAPSDC 613 (617)
Q Consensus 607 ~~~~~~~ 613 (617)
+++|+.+
T Consensus 927 y~vP~~i 933 (994)
T PRK07868 927 GLGPDIV 933 (994)
T ss_pred CcCCeEE
Confidence 7777643
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=484.10 Aligned_cols=439 Identities=22% Similarity=0.282 Sum_probs=357.2
Q ss_pred eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEe
Q 007119 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (617)
Q Consensus 112 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (617)
+.+||+||.+++.++|++|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhccCCC-CceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCC
Q 007119 192 VPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270 (617)
Q Consensus 192 ~~~~~~~l~~~~~~~~-~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 270 (617)
+......+.+.....+ ..+.++..+... .....|++...... .......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence 9877766655544444 455555543210 12234555543221 1122355778999999999999
Q ss_pred ccEEEecHHHHHHHH------HhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhC
Q 007119 271 PKGAVLSHGNLIASV------AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALR 343 (617)
Q Consensus 271 PKgV~~th~~l~~~~------~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~ 343 (617)
||||+++|.++.... ...........++++++.+|++|.+++...+.++..|+++.+.+ +++..+++.+++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 999999987754322 11111222357889999999999999888888999999998887 78999999999999
Q ss_pred CeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCC
Q 007119 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423 (617)
Q Consensus 344 ~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l 423 (617)
+|++.++|+++..+.+..... ...+| .+++|.+++||+++
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~-----------------------------~~~~~-----------~~~lr~i~~~g~~~ 274 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEV-----------------------------RARYD-----------VSSLRVAIHAAAPC 274 (502)
T ss_pred CeEEEehHHHHHHHHhCcccc-----------------------------CCCCC-----------cccceEEEecCCCC
Confidence 999999999998876521000 00001 14899999999999
Q ss_pred cHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcc
Q 007119 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL 502 (617)
Q Consensus 424 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~ 502 (617)
+.++.+++.+.++..+++.||+||++.+++..... ....+++|.|+ +++++++| +++..++.+. .|||+++|+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~ 349 (502)
T PRK08276 275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGE---IGTVYFEMDG 349 (502)
T ss_pred CHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCC---ceEEEEECCC
Confidence 99999999998899999999999998766544332 24567899999 88999999 5667777675 8999999999
Q ss_pred ccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC
Q 007119 503 IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN 582 (617)
Q Consensus 503 v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~ 582 (617)
++.||+++++.+.+.+..+|||+|||+|+++++|.+++.||+||++|+ +|++|+|++||.++.++|+|.+++|++..+.
T Consensus 350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~ 428 (502)
T PRK08276 350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDE 428 (502)
T ss_pred ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCc
Confidence 999999999999999977799999999999999999999999999996 8999999999999999999999999998754
Q ss_pred ---CeEEEEEEeCH---------HHHHHHHHHcCCCCChhh
Q 007119 583 ---SALVAIVSVDQ---------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 583 ---~~~va~vv~~~---------~~~~~~~~~~~~~~~~~~ 611 (617)
+.++++|++.+ +.+.++++++...+++|.
T Consensus 429 ~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 469 (502)
T PRK08276 429 EMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPR 469 (502)
T ss_pred ccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCc
Confidence 47899999742 257788887655555543
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-57 Score=489.25 Aligned_cols=410 Identities=17% Similarity=0.154 Sum_probs=306.4
Q ss_pred cCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc------hHHHHhhccCCCCceEEEEECCC
Q 007119 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT------LNSLLSCLSEVPTVRLIVVIGGI 218 (617)
Q Consensus 145 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~------~~~l~~~~~~~~~~~~iv~~~~~ 218 (617)
++|++|++++++||+++|+++||+|+.++.+++.++|++++++++|++... .+.+.++....+ .+.++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222221111 2333332211
Q ss_pred CCCCCCCCccCCceEeeHHHHHhcCccC------CCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCc
Q 007119 219 DDQIPSLPITTGVQILTYSNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292 (617)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 292 (617)
.. .. . .......+|+++...+... ........++|+++|+|||||||.||||++||+|++.........+
T Consensus 80 ~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 155 (499)
T PLN03051 80 EP-VA-V--PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM 155 (499)
T ss_pred cc-cC-C--ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence 10 00 0 0000123566665322110 1111123568999999999999999999999999887665555556
Q ss_pred ccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCc
Q 007119 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (617)
Q Consensus 293 ~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~ 370 (617)
++.++|++++.+|++|.+++...+.+++.|+++++++ .++..+++.|+++++|++.++|+++..|.+.....
T Consensus 156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~------ 229 (499)
T PLN03051 156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA------ 229 (499)
T ss_pred CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc------
Confidence 7888999999999999999876777899999999886 57889999999999999999999999886521000
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh--CCceecccccccc
Q 007119 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTET 448 (617)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~v~~~YG~TE~ 448 (617)
......++||.+++||+++++++.+++++.+ +++++++||+||+
T Consensus 230 ----------------------------------~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 275 (499)
T PLN03051 230 ----------------------------------MEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL 275 (499)
T ss_pred ----------------------------------cccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence 0000014899999999999999998887743 4789999999998
Q ss_pred ccccccCCC-CCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccc--cccccCChhhhhcccCC-----
Q 007119 449 SCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI--FKGYYKDEIQTKEVIDE----- 520 (617)
Q Consensus 449 ~~~~~~~~~-~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v--~~GY~~~~~~t~~~~~~----- 520 (617)
+..++.... .....+++|.|.++++++|+| ++++.++.|+. ..|||+|+||.+ +.|||+++ .++..++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~-~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~ 352 (499)
T PLN03051 276 ASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP-CVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYG 352 (499)
T ss_pred cceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC-cceEEEEecCcCCCCccccCCc-ccceeeecCCccc
Confidence 754332222 223567999999999999999 56666666521 279999999977 58999865 34433321
Q ss_pred ---CCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc-CCCcceEEEEeeCCC----CeEEEEE---
Q 007119 521 ---DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKFVGQCFVYGDSFN----SALVAIV--- 589 (617)
Q Consensus 521 ---~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~-~p~V~~~~V~g~~~~----~~~va~v--- 589 (617)
.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+ ||+|.+|+|+|.+++ +.++|+|
T Consensus 353 ~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~ 431 (499)
T PLN03051 353 SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLG 431 (499)
T ss_pred cCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcc
Confidence 127999999999999999999999999996 8999999999999986 999999999998753 3678888
Q ss_pred Ee-------CHHHHHHHHHHc
Q 007119 590 SV-------DQDALKAWAASE 603 (617)
Q Consensus 590 v~-------~~~~~~~~~~~~ 603 (617)
++ +.+++.+||+++
T Consensus 432 v~~~~~~~~~~~~l~~~~~~~ 452 (499)
T PLN03051 432 EEKKGFDQARPEALQKKFQEA 452 (499)
T ss_pred eecccccccchHHHHHHHHHH
Confidence 54 246777777653
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=482.37 Aligned_cols=447 Identities=22% Similarity=0.271 Sum_probs=355.5
Q ss_pred eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEe
Q 007119 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (617)
Q Consensus 112 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (617)
+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhccCCCCceEEEEECCCCCCCC-----CCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccC
Q 007119 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP-----SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266 (617)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSG 266 (617)
+......+.+... ....++......+... ...........+|+++..... +.....++++++++||||
T Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 8877665543321 1112222221110000 000001122345666543221 122345789999999999
Q ss_pred CCCCccEEEecHHHH---HHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhh
Q 007119 267 TTGTPKGAVLSHGNL---IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAAL 342 (617)
Q Consensus 267 TTG~PKgV~~th~~l---~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~ 342 (617)
|||.||+|+++|.+. ..........+++.+++++++.+|++|..+....+.++..|+++++.+ .++..+++.++++
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 242 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH 242 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence 999999999876554 333333344577889999999999999988877777888999998877 7899999999999
Q ss_pred CCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCC
Q 007119 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422 (617)
Q Consensus 343 ~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~ 422 (617)
++|++.++|.++..+........ +....+++|.+++||++
T Consensus 243 ~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------~~~~~~~l~~v~~gg~~ 282 (509)
T PRK12406 243 RITHMHMVPTMFIRLLKLPEEVR----------------------------------------AKYDVSSLRHVIHAAAP 282 (509)
T ss_pred CCeEEEccHHHHHHHHhCchhhc----------------------------------------ccCCCCceeEEEEcCCC
Confidence 99999999999988765210000 00011489999999999
Q ss_pred CcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc
Q 007119 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP 501 (617)
Q Consensus 423 l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~ 501 (617)
+++++.+++.+.+++.+++.||+||++.+++..... ...++++|.|+++++++++| +++..++.+. .|||+++|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~ 358 (509)
T PRK12406 283 CPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGE---IGEIYSRIA 358 (509)
T ss_pred CCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCCC---ceEEEEECC
Confidence 999999999999999999999999998766543322 24567899999999999999 5566666665 899999999
Q ss_pred cccc-cccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeC
Q 007119 502 LIFK-GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580 (617)
Q Consensus 502 ~v~~-GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~ 580 (617)
.++. ||+++|+.+++.+ .+|||+|||+|++|+||++++.||.||+||+ +|++|+|.+||+.+.++|+|.+++|++.+
T Consensus 359 ~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 436 (509)
T PRK12406 359 GNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIP 436 (509)
T ss_pred ccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeee
Confidence 9875 9999999988776 7999999999999999999999999999996 89999999999999999999999999987
Q ss_pred CC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhh
Q 007119 581 FN---SALVAIVSV------DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 581 ~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~ 611 (617)
+. +.++++|++ +.+++.++++++..++..|.
T Consensus 437 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 476 (509)
T PRK12406 437 DAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPK 476 (509)
T ss_pred ccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCc
Confidence 54 467888875 34778888887765555554
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=478.24 Aligned_cols=423 Identities=22% Similarity=0.281 Sum_probs=338.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.++.+.+...+..+|+.+++... ++ .+.+||.||+++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 46888888999999999988654 43 256999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHH-------HHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 159 SAYSFISVPLYDTLGPDA-------VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~-------l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
+++|++++|+++..+.++ +.++++.++++.++++......+.... . .++
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----------------------~~~ 130 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-E-----------------------KGI 130 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-c-----------------------cCC
Confidence 999999999999887654 456788889999999765433222111 0 112
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCC-cEEEEeCChHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS-DVYISYLPLAHIY 310 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-d~~l~~lPl~h~~ 310 (617)
.++.++++..... .......++++++|+|||||||.||||+++|++++..+.......++..+ |++++.+|++|.+
T Consensus 131 ~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 207 (545)
T PRK07768 131 RVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM 207 (545)
T ss_pred ceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence 3355666654321 12234567999999999999999999999999999988877777777776 8999999999999
Q ss_pred HHHHH-HHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 311 ERANQ-VMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 311 ~~~~~-~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
++... +.++..|+++++++ .++..+.+.++++++|++...|.++..+...+......
T Consensus 208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------- 270 (545)
T PRK07768 208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------------- 270 (545)
T ss_pred HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------------
Confidence 98864 46799999998875 37888899999999999988887776654422110000
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHh---hCC---ceeccccccccccccccCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG 458 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~---~~~---~v~~~YG~TE~~~~~~~~~~~ 458 (617)
..+ ..+++|.+++||+++++++.+++.+. +|. .+++.||+||++..++.....
T Consensus 271 ----------~~~-----------~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~ 329 (545)
T PRK07768 271 ----------GAF-----------DLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG 329 (545)
T ss_pred ----------cCC-----------CchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence 000 11489999999999999999998874 554 499999999998755433221
Q ss_pred --------------------------CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChh
Q 007119 459 --------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (617)
Q Consensus 459 --------------------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~ 512 (617)
....+++|+|+++++++++| +++..++.++ .|||+++|+.++.||++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~ 405 (545)
T PRK07768 330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRG---VGVIELRGESVTPGYLTMDG 405 (545)
T ss_pred CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCC---EEEEEEccCcccccccCCCC
Confidence 11346899999999999999 6667777665 89999999999999998655
Q ss_pred hhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEee
Q 007119 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579 (617)
Q Consensus 513 ~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~ 579 (617)
... .++.+|||+|||+|++++||+++++||+||+||+ +|++|+|.+||+.+.+||+|.+++|++.
T Consensus 406 ~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~ 470 (545)
T PRK07768 406 FIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAV 470 (545)
T ss_pred Ccc-cccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEE
Confidence 443 4447899999999999999999999999999997 8999999999999999999999887764
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=463.39 Aligned_cols=408 Identities=25% Similarity=0.292 Sum_probs=337.0
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEeccc
Q 007119 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (617)
Q Consensus 115 Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (617)
||+||.++++++|..|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+.+..++++++++.++++..
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred chHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEE
Q 007119 195 TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274 (617)
Q Consensus 195 ~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV 274 (617)
..... +. ...+.++................+++++++|||||||.||+|
T Consensus 81 ~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v 129 (436)
T TIGR01923 81 LEEKD-------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAV 129 (436)
T ss_pred ccccc-------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEE
Confidence 32110 00 011122211111111112234568999999999999999999
Q ss_pred EecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhhHHHHHHhhCCeEEeechHHH
Q 007119 275 VLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY 354 (617)
Q Consensus 275 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~vP~~~ 354 (617)
+++|+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.++|.++
T Consensus 130 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l 208 (436)
T TIGR01923 130 PHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQL 208 (436)
T ss_pred EEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHH
Confidence 999999999888887788899999999999999999988778899999999987633 3889999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHh
Q 007119 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434 (617)
Q Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~ 434 (617)
..+.+... + ..++|.+++||+++++++.++++.
T Consensus 209 ~~l~~~~~-------------------------------------------~---~~~l~~~~~~G~~~~~~~~~~~~~- 241 (436)
T TIGR01923 209 NRLLDEGG-------------------------------------------H---NENLRKILLGGSAIPAPLIEEAQQ- 241 (436)
T ss_pred HHHHhCcC-------------------------------------------C---CCceEEEEECCCCCCHHHHHHHHH-
Confidence 88765200 0 038999999999999999998876
Q ss_pred hCCceeccccccccccccccCCCCC-CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhh
Q 007119 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (617)
Q Consensus 435 ~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~ 513 (617)
+++++++.||+||++..++...... ....++|.|++++++++.+.+. ++ .|||+++|+.++.||+++++.
T Consensus 242 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~------~~---~Gel~v~~~~~~~gy~~~~~~ 312 (436)
T TIGR01923 242 YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK------EG---HGEIMVKGANLMKGYLYQGEL 312 (436)
T ss_pred hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC------CC---ceEEEEECCccchhhCCChhh
Confidence 4999999999999987655433322 2223599999999999944222 12 799999999999999999888
Q ss_pred hhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEE
Q 007119 514 TKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVS 590 (617)
Q Consensus 514 t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv 590 (617)
+...+ .+|||+|||+|++++||++++.||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.++. ..++++|+
T Consensus 313 ~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 390 (436)
T TIGR01923 313 TPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390 (436)
T ss_pred hhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEE
Confidence 87766 7899999999999999999999999999996 8999999999999999999999999998754 46778887
Q ss_pred e----CHHHHHHHHHHcCCCCChhhh
Q 007119 591 V----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 591 ~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+ +...+.+|++++...+.+|..
T Consensus 391 ~~~~~~~~~l~~~l~~~l~~~~~p~~ 416 (436)
T TIGR01923 391 SESDISQAKLIAYLTEKLAKYKVPIA 416 (436)
T ss_pred ECCCCCHHHHHHHHHHhhhCCCCCeE
Confidence 5 456788888876554555543
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-55 Score=461.92 Aligned_cols=389 Identities=22% Similarity=0.306 Sum_probs=325.9
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecc
Q 007119 115 TYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193 (617)
Q Consensus 115 Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 193 (617)
||.||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccE
Q 007119 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273 (617)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKg 273 (617)
.....+..... .++.+... +..................++++++++|||||||.||+
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~ 137 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKG 137 (408)
T ss_pred chhhhccccCC------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence 76554432211 11111110 00000000000011111457899999999999999999
Q ss_pred EEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC----ChhhHHHHHHhhCCeEEee
Q 007119 274 AVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCS 349 (617)
Q Consensus 274 V~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~----~~~~l~~~i~~~~~t~~~~ 349 (617)
|.+||++++..+......+.+.++|++++.+|++|.+++...+.++..|+++++++. .+..+.+.++++++|.+.+
T Consensus 138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~ 217 (408)
T TIGR01733 138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL 217 (408)
T ss_pred EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence 999999999998888878888899999999999999998888899999999998872 2678888999999999999
Q ss_pred chHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHH
Q 007119 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429 (617)
Q Consensus 350 vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~ 429 (617)
+|.+++.+.+... ....++|.+++||+++++++.+
T Consensus 218 ~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~ 252 (408)
T TIGR01733 218 TPSLLALLAAALP---------------------------------------------PALASLRLVILGGEALTPALVD 252 (408)
T ss_pred CHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccCCHHHHH
Confidence 9999999876321 0114899999999999999999
Q ss_pred HHHHhhC-CceeccccccccccccccCCCCC---C--CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccc
Q 007119 430 FLKICFG-GRVTEGYGMTETSCLISQLDEGD---N--LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI 503 (617)
Q Consensus 430 ~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~---~--~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v 503 (617)
++++.++ +.+++.||+||++..+....... . ...++|.|+++++++|+|++ +..++.++ .|||+++|+++
T Consensus 253 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~---~Gel~v~~~~~ 328 (408)
T TIGR01733 253 RWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGV---VGELYIGGPGV 328 (408)
T ss_pred HHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCC---ceEEEecCccc
Confidence 9999997 89999999999987664322111 1 26789999999999999954 67777676 89999999999
Q ss_pred cccccCChhhhhcccCCC------C--eeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEE
Q 007119 504 FKGYYKDEIQTKEVIDED------G--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCF 575 (617)
Q Consensus 504 ~~GY~~~~~~t~~~~~~~------g--w~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~ 575 (617)
+.||+++++.|.+.|..+ | ||+|||+|++|++|++++.||.||+|++ +|++|+|.+||+++..+|.|.+|+
T Consensus 329 ~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~ 407 (408)
T TIGR01733 329 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAV 407 (408)
T ss_pred cccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhc
Confidence 999999999999887433 3 9999999999999999999999999996 899999999999999999999987
Q ss_pred E
Q 007119 576 V 576 (617)
Q Consensus 576 V 576 (617)
|
T Consensus 408 v 408 (408)
T TIGR01733 408 V 408 (408)
T ss_pred C
Confidence 5
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=452.00 Aligned_cols=451 Identities=21% Similarity=0.294 Sum_probs=363.3
Q ss_pred HHHHHHHHHh-cCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 007119 82 HDNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA 160 (617)
Q Consensus 82 ~~~l~~~a~~-~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (617)
+.++.+..+. .+|.+++.++ +...++...+||.|+.+++.++|..|.+.|+++||+|++++|+.+|++++++||.+
T Consensus 67 ~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r 143 (626)
T KOG1175|consen 67 YNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACAR 143 (626)
T ss_pred HhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhh
Confidence 3444555444 4899999887 33333334489999999999999999988999999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhccccEEEecccchH---------HHHhhccCCCC-----ceEEEEECCCCCCCCCCC
Q 007119 161 YSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEVPT-----VRLIVVIGGIDDQIPSLP 226 (617)
Q Consensus 161 ~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~l~~~~~~~~~-----~~~iv~~~~~~~~~~~~~ 226 (617)
+|++.+++...+++.++...+++++++++++.+.... .+.+....++. .+.+++.+.
T Consensus 144 ~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 214 (626)
T KOG1175|consen 144 IGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR--------- 214 (626)
T ss_pred cCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc---------
Confidence 9999999999999999999999999999999764321 22222221111 111111111
Q ss_pred ccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHH-HHHHHhhhcCcccCCCcEEEEeCC
Q 007119 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLP 305 (617)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lP 305 (617)
.+.+.|++++..... ..+..+.+.+|+.+|+|||||||.|||+.+|+... +..+......+.+.++|++.++..
T Consensus 215 ----~~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d 289 (626)
T KOG1175|consen 215 ----NRDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASD 289 (626)
T ss_pred ----cccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecc
Confidence 113456666444333 23366678899999999999999999999988774 455555566689999999999999
Q ss_pred hHHHHHHHHH-HHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 007119 306 LAHIYERANQ-VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (617)
Q Consensus 306 l~h~~~~~~~-~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (617)
+.++.+-+.. +.+|+.|++++++. +++..+++.+.++++|++++.|+.++.+..........
T Consensus 290 ~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~-------------- 355 (626)
T KOG1175|consen 290 LGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS-------------- 355 (626)
T ss_pred cCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc--------------
Confidence 9999988875 55999999999997 58899999999999999999999999776532211110
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccccccccCCCCC-
Q 007119 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD- 459 (617)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~- 459 (617)
++ | .+||.+.++|+|++++..+++.+.++. +|++.||+||+|+.+....+..
T Consensus 356 ---------------~~---~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~ 409 (626)
T KOG1175|consen 356 ---------------YS---L--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL 409 (626)
T ss_pred ---------------cc---c--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC
Confidence 00 0 379999999999999999999999987 6999999999998887766666
Q ss_pred -CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCc---cccccccCChhhhhcccCC--CCeeeecceEEEe
Q 007119 460 -NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWI 533 (617)
Q Consensus 460 -~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~---~v~~GY~~~~~~t~~~~~~--~gw~~TGDlg~~~ 533 (617)
..+++.|.|.+|+.+.|.|. +++..+... ..|||+++.+ +.+++||+|++.-..+.-. .|+|.|||.|++|
T Consensus 410 p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~--~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd 486 (626)
T KOG1175|consen 410 PIKPGSAGKPFPGYDVQILDE-NGNELPPST--GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRD 486 (626)
T ss_pred CcCccccCCCCCCcceEEECC-CCCCcCCCC--ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEc
Confidence 88999999999999999995 666666553 3899999975 5699999999944444324 7999999999999
Q ss_pred cCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH
Q 007119 534 PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ 593 (617)
Q Consensus 534 ~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~ 593 (617)
+||++++.||.||+|++ +|.++.+.|||+++.+||.|.|++|+|.+++ +.++|||++.+
T Consensus 487 ~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~ 548 (626)
T KOG1175|consen 487 EDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKS 548 (626)
T ss_pred CCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcC
Confidence 99999999999999997 7999999999999999999999999998865 68999999854
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=444.74 Aligned_cols=371 Identities=14% Similarity=0.146 Sum_probs=316.2
Q ss_pred EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEec
Q 007119 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (617)
Q Consensus 113 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~ 192 (617)
.+||+||.++++++|+.|. .|+++|++|+|+++|+++|+++++||+++|++++|+++..+.+++..++++++++.++++
T Consensus 8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~ 86 (414)
T PRK08308 8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG 86 (414)
T ss_pred eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence 5999999999999999985 689999999999999999999999999999999999999999999999999999999986
Q ss_pred ccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCcc
Q 007119 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (617)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 272 (617)
..... . . ......++++++++|||||||.||
T Consensus 87 ~~~~~----------------~-------------------~--------------~~~~~~~~~~~~i~~TSGtTG~PK 117 (414)
T PRK08308 87 ESDFT----------------K-------------------L--------------EAVNYLAEEPSLLQYSSGTTGEPK 117 (414)
T ss_pred Ccccc----------------c-------------------c--------------cCCCCCCCCceEEEECCCCCCCCc
Confidence 52100 0 0 001235678999999999999999
Q ss_pred EEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeec
Q 007119 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSV 350 (617)
Q Consensus 273 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~v 350 (617)
||++||+++.+.+......+.+..+|+.+..+|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++
T Consensus 118 gv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~ 197 (414)
T PRK08308 118 LIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAV 197 (414)
T ss_pred EEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcC
Confidence 999999999988887777778888999999999999999866 567899999998877 789999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHH
Q 007119 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430 (617)
Q Consensus 351 P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~ 430 (617)
|.++..+.+.... ..+++.+++||+++++++.+.
T Consensus 198 P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l~~~~~~~ 231 (414)
T PRK08308 198 PLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPLPEAWFYK 231 (414)
T ss_pred HHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCCCHHHHHH
Confidence 9999887652100 026788999999999999999
Q ss_pred HHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCC
Q 007119 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (617)
Q Consensus 431 ~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~ 510 (617)
+++. +.++++.||+||++++... ......+++|+|+|++++++.+. .++ .|||++++
T Consensus 232 ~~~~-~~~~~~~YG~tE~~~~~~~--~~~~~~~~~G~p~~~~~~~~~~~-------~~~---~gel~v~~---------- 288 (414)
T PRK08308 232 LRER-TTYMMQQYGCSEAGCVSIC--PDMKSHLDLGNPLPHVSVSAGSD-------ENA---PEEIVVKM---------- 288 (414)
T ss_pred HHHh-CChhhhccCccccCCeeec--CCCCCCCccCccCCCeEEEEecC-------CCC---CceEEEEc----------
Confidence 9887 6789999999999864432 22345678999999999998751 233 79999975
Q ss_pred hhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEE
Q 007119 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVA 587 (617)
Q Consensus 511 ~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va 587 (617)
.++||+|||+|++|+||+++++||.||+||+ +|++|+|.+||+++.++|+|.+++|++.++. +.+++
T Consensus 289 ---------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~ 358 (414)
T PRK08308 289 ---------GDKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKA 358 (414)
T ss_pred ---------CCceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEE
Confidence 3689999999999999999999999999997 8999999999999999999999999997754 46778
Q ss_pred EEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 588 IVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 588 ~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+++. +.+++++|++++...+++|..
T Consensus 359 ~v~~~~~~~~~~l~~~l~~~l~~~~~P~~ 387 (414)
T PRK08308 359 KVISHEEIDPVQLREWCIQHLAPYQVPHE 387 (414)
T ss_pred EEEeCCCCCHHHHHHHHHHhCccccCCcE
Confidence 8775 467889999987666666543
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=405.00 Aligned_cols=474 Identities=22% Similarity=0.238 Sum_probs=360.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
....|++++|..+++++|+++|+++. +. .+.+||+|++++++++|+.|+..|++.||.|+++++|++|++.+.
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 35679999999999999999999986 32 346999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCc-eEEEEECCCCCCCCCCCccCCceEe
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++.+++|++...||.++..+.+.|.|.-++++++|++.+....+.++.+.+... -.+...+..... . ...
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~-------~--g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP-------D--GIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC-------c--hHH
Confidence 999999999999999999999999999999999999999988888774433221 122222221110 0 111
Q ss_pred eHHHHHhcCccCCCC---CCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 235 TYSNLLSQGRSNLQP---FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
++.+.++.....+.+ .....-.++++.+|||||||.||++++||..+...+..+...++++++|+++..+||+|..+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa 297 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAA 297 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHH
Confidence 233333322222222 12234568999999999999999999999999988887778899999999999999999999
Q ss_pred HHHH-HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 312 RANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 312 ~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
.+.. ..++..|+++++-. ++...++++..++++|++--+-.+.+.|++...
T Consensus 298 ~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~--------------------------- 350 (649)
T KOG1179|consen 298 GILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPP--------------------------- 350 (649)
T ss_pred HHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCC---------------------------
Confidence 8874 56899999999977 999999999999999999888887777765211
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCc-eeccccccccccccccCCCCCCCCCCcCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHVGSP 468 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p 468 (617)
++ +.-..++|.++ |..+.+++++.|.++||.. |.+.||+||+...... .+.+.|.+|..
T Consensus 351 ----~~-----------~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N---~d~~vGA~G~~ 410 (649)
T KOG1179|consen 351 ----SP-----------EERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVN---YDGRVGACGFM 410 (649)
T ss_pred ----Ch-----------hhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeee---ecCccccccch
Confidence 10 11114788777 6669999999999999876 9999999998654332 24444555542
Q ss_pred Cc----CeEEEE--eecCCCCC-------CCCCCCCCcceEEE--eCccc---cccccCChhhhhccc------CCCCee
Q 007119 469 NA----ACEIKL--VDVPEMNY-------TSEDQPCPRGEICV--RGPLI---FKGYYKDEIQTKEVI------DEDGWF 524 (617)
Q Consensus 469 ~~----~~~v~i--vd~~~~~~-------~~~~~~~~~GEl~v--~g~~v---~~GY~~~~~~t~~~~------~~~gw~ 524 (617)
.- -..+++ +|++++++ |...+|++.|.+.- ..... |.||.++.++|++.. ..|-||
T Consensus 411 ~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f 490 (649)
T KOG1179|consen 411 SRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYF 490 (649)
T ss_pred hhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEE
Confidence 11 122333 34333332 22223445664432 23334 999999888887764 235599
Q ss_pred eecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEeCH------H
Q 007119 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSVDQ------D 594 (617)
Q Consensus 525 ~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~------~ 594 (617)
.|||+-.+|+.|+|||.||..|.|.. .||||+..|||.++..+.+++||.|+|+.-. ..-.|.|+.+| +
T Consensus 491 ~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~ 569 (649)
T KOG1179|consen 491 NTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLE 569 (649)
T ss_pred eeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHH
Confidence 99999999999999999999999998 7999999999999999999999999997522 24456666433 4
Q ss_pred HHHHHHHHcCCCCChhhhh
Q 007119 595 ALKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~ 613 (617)
.+-+.+++....|..|..+
T Consensus 570 ~l~~~l~~~LP~YA~P~Fl 588 (649)
T KOG1179|consen 570 KLYQHLRENLPSYARPRFL 588 (649)
T ss_pred HHHHHHHhhCccccchHHH
Confidence 5666677766667766554
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=379.38 Aligned_cols=411 Identities=20% Similarity=0.197 Sum_probs=335.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...++.++|...+.+.|++.|+... + ..+||+|+..+++++|+.|.+.|+.+++.|+++.+.++++++.+
T Consensus 224 ~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~ 294 (642)
T COG1020 224 PLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL 294 (642)
T ss_pred CccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence 34578999999999999999888653 2 34999999999999999999999999999999998899999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+|++++|+.++|+++.++.+++.+++++++++.+++......... .++. +..+...
T Consensus 295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~---------------- 350 (642)
T COG1020 295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALDDAL---------------- 350 (642)
T ss_pred HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----ccccccc----------------
Confidence 999999999999999999999999999999999999833211100 0010 1111100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
.......+ ......+++.+|++|||||||.||||+.+|+++.....+....+.+...|+++...++.+.......
T Consensus 351 ----~~~~~~~~-~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~ 425 (642)
T COG1020 351 ----SEIPDTDP-IPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEI 425 (642)
T ss_pred ----ccCCccCc-ccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHH
Confidence 00000000 0123456899999999999999999999999999987777777899999999999999888888888
Q ss_pred HHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
+.++..|+++++.. .++..+.+.+.++++|++..+|.++..+.........
T Consensus 426 f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~------------------------- 480 (642)
T COG1020 426 FGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL------------------------- 480 (642)
T ss_pred HHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc-------------------------
Confidence 99999999999876 6899999999999999999999999888763100000
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh--CCceeccccccccccccccCCCCCCC--CCCcCC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNL--SGHVGS 467 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~~~~~--~~~vG~ 467 (617)
......+|.+++||+.++.++...+.... ...+.+.||+||++............ ..++|.
T Consensus 481 ---------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~ 545 (642)
T COG1020 481 ---------------ISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGR 545 (642)
T ss_pred ---------------cCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcce
Confidence 00002499999999999999999887765 36899999999966544433222211 468999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCe
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ 547 (617)
|++++.++|+| +..+.++.+. .|||++.|.++.+||+++|+.|.+.|..+.+|+|||++++++||.+.++||.|++
T Consensus 546 p~~n~~~~ild-~~~~~~p~gv---~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~q 621 (642)
T COG1020 546 PVANTQLYILD-QGLRPLPLGV---PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQ 621 (642)
T ss_pred eeCCCeEEEEC-CCCCcCCCCC---CeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccce
Confidence 99999999999 6677777776 7999999999999999999999999955469999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCC
Q 007119 548 FKLAQGEYIAAEKIENVYAKCK 569 (617)
Q Consensus 548 ikl~~G~~i~p~~IE~~l~~~p 569 (617)
+|+ +|++|.+.|||..+.++|
T Consensus 622 vki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 622 VKI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred eEe-ceEecCcHHHHHHHhcCC
Confidence 997 899999999999998875
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=353.77 Aligned_cols=284 Identities=29% Similarity=0.347 Sum_probs=234.8
Q ss_pred CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec---
Q 007119 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--- 329 (617)
Q Consensus 253 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~--- 329 (617)
..++|+++|+|||||||.||||+++|+++.......... +...++++..+|++|.+++...+.+++.|++++++.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 457899999999999999999999999998887765443 335678999999999999988888899999988732
Q ss_pred -CChhhHHHHHHhhC--CeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHH
Q 007119 330 -GDNMKLMDDMAALR--PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406 (617)
Q Consensus 330 -~~~~~l~~~i~~~~--~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~ 406 (617)
+++..+++.+++++ .++...+|..+..+..... .
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-------------------------------------------~ 146 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-------------------------------------------A 146 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-------------------------------------------c
Confidence 68999999999998 4666778877765543100 0
Q ss_pred HhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCC
Q 007119 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (617)
Q Consensus 407 ~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~ 486 (617)
.....++|.+++||+++++++.+++.+ +++++++.||+||++..+. ..|.|++++++++.
T Consensus 147 ~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~--------- 206 (358)
T PRK07824 147 TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVE--------- 206 (358)
T ss_pred cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEec---------
Confidence 001148999999999999999999886 4999999999999875432 35899999999983
Q ss_pred CCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHh
Q 007119 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566 (617)
Q Consensus 487 ~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~ 566 (617)
.|||+++|+.++.||+++++.+ .|..+|||+|||+|++ ++|+++++||.||+||+ +|++|+|.+||+++.
T Consensus 207 ------~Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~ 276 (358)
T PRK07824 207 ------DGRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLPQVVEAALA 276 (358)
T ss_pred ------CCEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECHHHHHHHHH
Confidence 3999999999999999988754 4557899999999999 89999999999999997 899999999999999
Q ss_pred cCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHcCCCCChhh
Q 007119 567 KCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 567 ~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+|.+|+|+|.+++ +.++|+|++ +.+++.++++++...+++|.
T Consensus 277 ~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~ 330 (358)
T PRK07824 277 THPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPR 330 (358)
T ss_pred hCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCC
Confidence 9999999999997653 578888875 34678899988765565554
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=308.40 Aligned_cols=263 Identities=20% Similarity=0.165 Sum_probs=205.4
Q ss_pred CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccC--CCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec-CC
Q 007119 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GD 331 (617)
Q Consensus 256 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~-~~ 331 (617)
++.++++|||||||.||||++||+++++.+......+++. +.|++++.+|++|++++.+ .+.++..|+++++.+ ++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 4578999999999999999999999998887766655554 3468999999999999865 566888999998876 67
Q ss_pred hhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCC
Q 007119 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411 (617)
Q Consensus 332 ~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~ 411 (617)
+..+++.++.. |+++++|.+++.+.+.- ...+
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----------------------------------------------~~l~ 206 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----------------------------------------------YRLP 206 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC----------------------------------------------cCCC
Confidence 78888877643 89999999998876520 0012
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCC
Q 007119 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (617)
Q Consensus 412 ~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~ 490 (617)
++|. ++||+++++++.+.+++. +. .+++.||+||++++++... .+..|.|+|+.++++ + + +.
T Consensus 207 slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~-~--~------~~- 269 (386)
T TIGR02372 207 GVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA-D--T------LS- 269 (386)
T ss_pred ccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCccccC-C--C------cc-
Confidence 5665 678999999999999885 64 6999999999987554322 234567788776543 1 1 00
Q ss_pred CCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCC
Q 007119 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKF 570 (617)
Q Consensus 491 ~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~ 570 (617)
+ .|+ ..|++|||+|+||++|+|+|+||+||+||+ +|++|+|.+||+++.+||+
T Consensus 270 ----~---~g~-------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~ 322 (386)
T TIGR02372 270 ----S---AGL-------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPR 322 (386)
T ss_pred ----C---CCc-------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCC
Confidence 0 121 237899999999999999999999999996 8999999999999999999
Q ss_pred cceEEEEeeCCCCeEEEEEEeCH--------HHHHHHHHHcCCCCChhhh
Q 007119 571 VGQCFVYGDSFNSALVAIVSVDQ--------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 571 V~~~~V~g~~~~~~~va~vv~~~--------~~~~~~~~~~~~~~~~~~~ 612 (617)
|.+++|+.. .+.+.|+|++++ +++.+|++++...++.|..
T Consensus 323 V~~~~v~~~--g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~ 370 (386)
T TIGR02372 323 VRAAAVRLD--GRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDR 370 (386)
T ss_pred ceEEEEEcC--CceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcE
Confidence 999999743 567889998653 4778888887666666653
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=294.22 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=209.0
Q ss_pred CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhh---hcCcccCCCcEEEEeCChHHHHH-HHHHHHHHHhCcEEEEe
Q 007119 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYE-RANQVMTVYSGVAVGFY 328 (617)
Q Consensus 253 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~lPl~h~~~-~~~~~~~l~~G~~~~~~ 328 (617)
..+++++.++|||||||.||+|++||.++....... ....++.++|++++..+..+..+ +...+.++..|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 345688999999999999999999999987654332 23357888999988766544332 33345577889998876
Q ss_pred c-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHH
Q 007119 329 Q-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407 (617)
Q Consensus 329 ~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 407 (617)
+ .++..+++.|++++||+++++|+.+..|.+..... +..+
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~-------------------------~~~~-------------- 192 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM-------------------------GIDP-------------- 192 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc-------------------------CCCc--------------
Confidence 5 67899999999999999999999999887642211 0000
Q ss_pred hhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCCcCCCC--cCeEEEEeecCCCCC
Q 007119 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNY 484 (617)
Q Consensus 408 ~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~p~--~~~~v~ivd~~~~~~ 484 (617)
...++|.+++||+++++++.+.+++.||+++++.||+||+++. +..... +. ..|.++ +++.++|+|++++..
T Consensus 193 -~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~-~~---~~g~~~~~~~~~~eivd~~~g~~ 267 (422)
T TIGR02155 193 -AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECV-ET---QDGLHIWEDHFYPEIIDPHTGEV 267 (422)
T ss_pred -ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccc-cc---CCCceEecCeeEEEEECCCCCCC
Confidence 0037999999999999999999999999999999999998532 211111 11 123333 357788999767777
Q ss_pred CCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC-C-----cEEEEecCCCeeecCCeeeech
Q 007119 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-G-----RLKIIDRKKNIFKLAQGEYIAA 558 (617)
Q Consensus 485 ~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G-----~l~i~gR~~d~ikl~~G~~i~p 558 (617)
++.|+ .|||++++. +++.| ..+||+|||+++++++ | .++|.||.+|+||+ +|++|+|
T Consensus 268 v~~Ge---~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~v~p 330 (422)
T TIGR02155 268 LPDGE---EGELVFTTL------------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVNVFP 330 (422)
T ss_pred CCCCC---eeEEEEecC------------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEEECH
Confidence 77776 899999973 34555 6789999999999876 4 57899999999997 7999999
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007119 559 EKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (617)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (617)
.+||+++.+||+|...+.+..... +.++..|+++
T Consensus 331 ~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~ 367 (422)
T TIGR02155 331 TQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELK 367 (422)
T ss_pred HHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence 999999999999984444433222 3566666543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-27 Score=252.62 Aligned_cols=456 Identities=15% Similarity=0.161 Sum_probs=316.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
.+|.++|+++++++||.+|+... ++...+...+||++|.+++.+++..|... -+++||.|+++++++.|++++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 78999999999999999999887 77777778899999999999999999987 489999999999999999999999
Q ss_pred HHhcCCeEEecCCCC------CHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEECCCCCCCCCCCc
Q 007119 158 CSAYSFISVPLYDTL------GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGGIDDQIPSLPI 227 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~------~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~~~~~~~~~~~~ 227 (617)
|+.+|.+++|+.|.- .-..+..|++..++++|+++......+.+.-. +......++.+++....
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t------ 920 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPET------ 920 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchh------
Confidence 999999999998854 23478899999999999999765443322110 00111122222211100
Q ss_pred cCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChH
Q 007119 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307 (617)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~ 307 (617)
+ ......+.+. ..+.++.-..++.+|++-+.--++|.--|+.+||.++++.++.......+.++.-++..++.+
T Consensus 921 ---~-~k~~~~~~k~--~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~ 994 (1363)
T KOG3628|consen 921 ---I-RKRKKNIKKL--NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY 994 (1363)
T ss_pred ---h-hhhhhhhhcc--CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence 0 0011111111 111122234578899999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 007119 308 HIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (617)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (617)
...|+.. +++..|.|.+..+.+ .++..|+..|+.|++.-++.+-..++.+.+.+..+..... .
T Consensus 995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~---~-------- 1063 (1363)
T KOG3628|consen 995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS---K-------- 1063 (1363)
T ss_pred cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh---h--------
Confidence 8888877 467899999988876 5899999999999998888877777766654332221110 0
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh---CC---ceeccccccccccccccC
Q 007119 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQL 455 (617)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~---~~---~v~~~YG~TE~~~~~~~~ 455 (617)
.+.+. ++ ..++..-+.....+...|.+.| |. .+.-.|+.-=...++...
T Consensus 1064 -------~gnn~-----------------s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~ 1118 (1363)
T KOG3628|consen 1064 -------RGNNT-----------------SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRS 1118 (1363)
T ss_pred -------hhccc-----------------cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhcc
Confidence 00000 01 1222222223333333333322 11 122222221111111110
Q ss_pred ---------------------------CCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcccccccc
Q 007119 456 ---------------------------DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (617)
Q Consensus 456 ---------------------------~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~ 508 (617)
.+........|...+++++.|+++++..++.+++ .||||++|.+-+.+|+
T Consensus 1119 ~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge---~GEIW~~S~hnA~~~~ 1195 (1363)
T KOG3628|consen 1119 YSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE---LGEIWVNSAHNASCSF 1195 (1363)
T ss_pred ccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC---cceEEecccccccccc
Confidence 0011112235888899999999999888888887 9999999999999888
Q ss_pred CChh-hhhccc---------CCCCeeeecceEEEe------cCC----cEEEEecCCCeeecCCeeeechHHHHHHH-hc
Q 007119 509 KDEI-QTKEVI---------DEDGWFHTGDIGMWI------PGG----RLKIIDRKKNIFKLAQGEYIAAEKIENVY-AK 567 (617)
Q Consensus 509 ~~~~-~t~~~~---------~~~gw~~TGDlg~~~------~dG----~l~i~gR~~d~ikl~~G~~i~p~~IE~~l-~~ 567 (617)
+-.. .....| +..+|.||||+|++. .+| -||++|-.++.+.+ +|-+.+|.+||..+ +.
T Consensus 1196 ~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~v 1274 (1363)
T KOG3628|consen 1196 TIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERV 1274 (1363)
T ss_pred ccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHh
Confidence 6311 111112 244699999999985 222 49999999999998 89999999999999 67
Q ss_pred CCCcceEEEEeeCCCCeEEEEEEe
Q 007119 568 CKFVGQCFVYGDSFNSALVAIVSV 591 (617)
Q Consensus 568 ~p~V~~~~V~g~~~~~~~va~vv~ 591 (617)
||.|..|+|+... ..+|.+|..
T Consensus 1275 H~~I~~cavF~~~--glvVvviE~ 1296 (1363)
T KOG3628|consen 1275 HPSIGGCAVFQAT--GLVVVVIEC 1296 (1363)
T ss_pred cccccceeeEeeC--CeEEEEEEe
Confidence 9999999999754 334444443
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=219.53 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=165.3
Q ss_pred HHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 007119 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (617)
Q Consensus 85 l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 163 (617)
+...++++|+++|+++. +...++.+.+||+|+.++++++|++|.+ .|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46778889999999764 3221123569999999999999999998 7999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEEC--CCCCCCCCCCccCCceEeeHHHHHh
Q 007119 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIG--GIDDQIPSLPITTGVQILTYSNLLS 241 (617)
Q Consensus 164 v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (617)
+++|++ ++++++++++.+..+.+. .+ +.++.+. ...... ...... ...+|.+...
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~ 135 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRV-AGELPP--GVIDFAPEVR 135 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCC-CCCCCC--cccchhhhhh
Confidence 999995 789999999987766642 11 2233321 111000 000011 2246666554
Q ss_pred cCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHH
Q 007119 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVY 320 (617)
Q Consensus 242 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~ 320 (617)
.......+.+...++|++.|+||||+ +|++++... ...++.++|+++ .+|++|++|+.. .+.+++
T Consensus 136 ~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~ 201 (227)
T TIGR03089 136 VHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLA 201 (227)
T ss_pred ccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhc
Confidence 32222122214567999999999986 677766654 446788999999 999999999876 667899
Q ss_pred hCcEEEEec-CChhhHHHHHHhhCCe
Q 007119 321 SGVAVGFYQ-GDNMKLMDDMAALRPT 345 (617)
Q Consensus 321 ~G~~~~~~~-~~~~~l~~~i~~~~~t 345 (617)
.|+++++++ +++..+++.|+++|+|
T Consensus 202 ~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 202 AGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred cCceEEEecCCCHHHHHHHHHhhcCC
Confidence 999999988 9999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=234.47 Aligned_cols=259 Identities=17% Similarity=0.177 Sum_probs=187.1
Q ss_pred CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEe
Q 007119 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFY 328 (617)
Q Consensus 253 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~ 328 (617)
...++++.+.|||||||.||+|.+||.++......... ..++.++|+++...|+.+..+... .+.++..|++++.
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~- 161 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP- 161 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc-
Confidence 34578999999999999999999999998766544332 247889999999988877655433 3456778887653
Q ss_pred cCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHh
Q 007119 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408 (617)
Q Consensus 329 ~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 408 (617)
.+.....++.|+.+++|.++++|..+..+.+..... +..+
T Consensus 162 ~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g~~~--------------- 201 (445)
T TIGR03335 162 EGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------GIDP--------------- 201 (445)
T ss_pred CCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------CCCc---------------
Confidence 334456788999999999999999887776532211 0000
Q ss_pred hCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCC--cCeEEEEeecCCCCCCC
Q 007119 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYTS 486 (617)
Q Consensus 409 ~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~ivd~~~~~~~~ 486 (617)
...++|.+++||++++++..+.+.+.||+++++.||+||++.. ..... ..|..+ +.+.+.|+|++++..++
T Consensus 202 ~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp 274 (445)
T TIGR03335 202 AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQA------VAGLHVPEDLVHLDVYDPRHQRFLP 274 (445)
T ss_pred ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecC------CCCccccCCceEEEEEcCCCCCCCc
Confidence 0137999999999999999999999999999999999998532 21111 123333 45789999966666677
Q ss_pred CCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec-C----Cc----EEEEecCCCeeecCCeeeec
Q 007119 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-G----GR----LKIIDRKKNIFKLAQGEYIA 557 (617)
Q Consensus 487 ~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-d----G~----l~i~gR~~d~ikl~~G~~i~ 557 (617)
.|+ .|||++++-.... +++.+ +==-|+|||++++.. + |. +..+||.||++++ +|.+|+
T Consensus 275 ~Ge---~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~~ 341 (445)
T TIGR03335 275 DGE---CGRIVLTTLLKPG--------ERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPFN 341 (445)
T ss_pred CCC---ceEEEEEecCCCC--------ccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEeC
Confidence 776 9999998742100 00001 001389999999732 2 31 4557999999999 899999
Q ss_pred hHHHHHHHhcC---CCcc
Q 007119 558 AEKIENVYAKC---KFVG 572 (617)
Q Consensus 558 p~~IE~~l~~~---p~V~ 572 (617)
|.+||++|.++ +++.
T Consensus 342 p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 342 RVDVERAVFQRENMDSLT 359 (445)
T ss_pred HHHHHHHHhccCCCCCCC
Confidence 99999999995 5553
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=247.58 Aligned_cols=469 Identities=16% Similarity=0.123 Sum_probs=297.7
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
+.++.+.+.+.+...|...+..+.+.. ...+.....||++.....+.+++.|...|..+|+.|++++..+.++++..++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTA-SESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeecc-cccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence 468888999999999999988765331 1223344589999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCC----HHHHH---HHHHhccccEEEecccchHHHHhhccC-CCCceEEEEECCCCCCCCCCCccC
Q 007119 158 CSAYSFISVPLYDTLG----PDAVK---YIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPITT 229 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~----~~~l~---~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~iv~~~~~~~~~~~~~~~~ 229 (617)
.+++|..+++++|.++ ++.+. +.+......++ ... +.+...... .+... + ..
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~l--~i~~~~~~~~~~~~s----v------------~~ 173 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RRL--NIIDILLNSLFPKLS----V------------ET 173 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hhh--hhHHHHhhccccccc----h------------hh
Confidence 9999999999999998 22111 11111111110 000 000000000 00000 0 00
Q ss_pred CceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCC-h-H
Q 007119 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP-L-A 307 (617)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lP-l-~ 307 (617)
+ .-.|..+.... ........-+|..++++||||+||.||+|..+|..+.....+....+.+..++++ ...+ . +
T Consensus 174 ~--~~~f~~~~~~~--~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~ 248 (1032)
T KOG1178|consen 174 I--ADSFQMVLHNE--DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYF 248 (1032)
T ss_pred c--cchhhhhhccC--CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeec
Confidence 0 01111111110 0111223456778999999999999999999999999999998888888877765 2222 2 2
Q ss_pred HHHHHHHHHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 007119 308 HIYERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (617)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (617)
|..-.......++.|+.+..+. ..+..+.+.+.+++++.+..+|++.+.+........
T Consensus 249 ~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~------------------ 310 (1032)
T KOG1178|consen 249 DDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSL------------------ 310 (1032)
T ss_pred ccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcch------------------
Confidence 2222223344566666565543 347899999999999999999999888766321100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHhhC---CceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC
Q 007119 384 KQAMLSGKNPSPMWDRLVFNKIKDKLG---GRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD 459 (617)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g---~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~ 459 (617)
+.+.....-..+. +.|+....+|+|....+...+...+ ..-...-|+.|+..+..+...-..
T Consensus 311 --------------~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~ 376 (1032)
T KOG1178|consen 311 --------------PLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSP 376 (1032)
T ss_pred --------------hhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCc
Confidence 0000000000000 4899999999999999988555544 222333488888766554322111
Q ss_pred CCCCCcCCCCcCeEEEEeec---------------CCCCCCCCCCCC-CcceEEEeCccccccccCChhhhhccc-----
Q 007119 460 NLSGHVGSPNAACEIKLVDV---------------PEMNYTSEDQPC-PRGEICVRGPLIFKGYYKDEIQTKEVI----- 518 (617)
Q Consensus 460 ~~~~~vG~p~~~~~v~ivd~---------------~~~~~~~~~~~~-~~GEl~v~g~~v~~GY~~~~~~t~~~~----- 518 (617)
.+.-+....+..+.. ..+...+.+.+. ..|+.+.-+..+..| +..++.....+
T Consensus 377 -----s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~ 450 (1032)
T KOG1178|consen 377 -----SKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDG 450 (1032)
T ss_pred -----ccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCccccccc
Confidence 111111111111110 111111111000 022222333444455 34454433332
Q ss_pred CCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH--
Q 007119 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-- 593 (617)
Q Consensus 519 ~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-- 593 (617)
..+..|||||.|+..++|.+.|.||.|++||+ +|.+|...||+..+..||.|.++++.+..+. +.++|||++..
T Consensus 451 ~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~ 529 (1032)
T KOG1178|consen 451 VKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGS 529 (1032)
T ss_pred chhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCC
Confidence 23458999999999999999999999999997 8999999999999999999999998886643 47999999732
Q ss_pred -----HHHHHHHHHcCCCCChhh
Q 007119 594 -----DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 594 -----~~~~~~~~~~~~~~~~~~ 611 (617)
..++.|++.+...+++|.
T Consensus 530 ~~~~~~~i~~~l~~~La~y~vPs 552 (1032)
T KOG1178|consen 530 KSVLIRDIRNYLKKELASYMLPS 552 (1032)
T ss_pred CchhHHHHHHhhcccccceecce
Confidence 458899998888788774
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=195.30 Aligned_cols=278 Identities=19% Similarity=0.185 Sum_probs=204.4
Q ss_pred CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChH-HHHHHHHHHHHHHhCcEEEEe
Q 007119 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA-HIYERANQVMTVYSGVAVGFY 328 (617)
Q Consensus 253 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~-h~~~~~~~~~~l~~G~~~~~~ 328 (617)
...+++..|-.||||||+|+-+.+|+..+......+... .+...+|++....-.. +..++.....+--.|+++.-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 345677779999999999999999999876665544433 5677788665443311 112233444555566666544
Q ss_pred c-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHH
Q 007119 329 Q-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407 (617)
Q Consensus 329 ~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 407 (617)
. ++...-++.++.++||++.++|+.+..|.+.+.... ..+ +.
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G-------------------------~~~----~~-------- 209 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG-------------------------IDP----DK-------- 209 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC-------------------------CCh----hh--------
Confidence 4 689999999999999999999999999988654321 000 00
Q ss_pred hhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCC--CCcCeEEEEeecCCCCCC
Q 007119 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYT 485 (617)
Q Consensus 408 ~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~--p~~~~~v~ivd~~~~~~~ 485 (617)
.++|.+++|+++++++..+.+.+.||+.+++.||+||..+........ .. |- .-...-+.|+|++.+.++
T Consensus 210 ---~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~----~~-glhi~eD~~~~Ei~dP~t~e~l 281 (438)
T COG1541 210 ---LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTE----RN-GLHIWEDHFIFEIVDPETGEQL 281 (438)
T ss_pred ---cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccc----cc-CCCcchhhceeeeecCCcCccC
Confidence 389999999999999999999999999999999999987653111111 11 22 235678899999999999
Q ss_pred CCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC----Cc-----EEEEecCCCeeecCCeeee
Q 007119 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GR-----LKIIDRKKNIFKLAQGEYI 556 (617)
Q Consensus 486 ~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~-----l~i~gR~~d~ikl~~G~~i 556 (617)
++|+ .|||.+..-. ++.+ +==-|+|||+..+.++ |. -.|.||.+|++++ .|.+|
T Consensus 282 ~dge---~GelV~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~~v 344 (438)
T COG1541 282 PDGE---RGELVITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGVNV 344 (438)
T ss_pred CCCC---eeEEEEEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCEEe
Confidence 9997 9999997632 2211 1114999999999864 32 5799999999998 69999
Q ss_pred chHHHHHHHhcCCCcc---eEEEEeeCCCCeEEEEEEeC
Q 007119 557 AAEKIENVYAKCKFVG---QCFVYGDSFNSALVAIVSVD 592 (617)
Q Consensus 557 ~p~~IE~~l~~~p~V~---~~~V~g~~~~~~~va~vv~~ 592 (617)
+|..||.++.+.+.+. ++++........+..-|+..
T Consensus 345 fp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~ 383 (438)
T COG1541 345 FPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE 383 (438)
T ss_pred CHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence 9999999999999999 77777733345666666654
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=182.54 Aligned_cols=454 Identities=15% Similarity=0.108 Sum_probs=302.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCC--HhHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS-GLIYHGISKGSCIGLYFVNR--PEWL 152 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~-~L~~~Gv~~gd~V~i~~~n~--~e~~ 152 (617)
..+..+..+++++-.+++...|.++. |.+.. ...+||..+..++.++|+ .|-+.|+.++|+|.++...+ .|++
T Consensus 91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~ 166 (1363)
T KOG3628|consen 91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL 166 (1363)
T ss_pred hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence 35677888888888889999999987 76644 788999999999999999 66667999999999999777 7999
Q ss_pred HHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 153 IVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 153 ~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
+..++|...|.+.+|+.+..+-+++..+++.+..+++++.......+..........+.+-.... ...+
T Consensus 167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t-----------~~~k 235 (1363)
T KOG3628|consen 167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKT-----------NDFK 235 (1363)
T ss_pred hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhc-----------cccc
Confidence 99999999999999999999999999999999999999887665544332211000000000000 0000
Q ss_pred -EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc--------------------C
Q 007119 233 -ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------------------G 291 (617)
Q Consensus 233 -~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------------------~ 291 (617)
.+.++. ...+.-.-. ..+|-||++++|.--|++.+|+ ++.+.+.+.. .
T Consensus 236 ~~~~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v 304 (1363)
T KOG3628|consen 236 GNYTKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV 304 (1363)
T ss_pred ceeehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence 111111 111111222 8899999999999999999998 5544333211 1
Q ss_pred cccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhh
Q 007119 292 TKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVR 366 (617)
Q Consensus 292 ~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~ 366 (617)
++....++++..+......|++. .+.+++.|.+....+ ..|..+...+.++|.+++..--..+......++.
T Consensus 305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~--- 381 (1363)
T KOG3628|consen 305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE--- 381 (1363)
T ss_pred cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC---
Confidence 34556778888887777777776 567999999988776 4677788888899999887654333332221111
Q ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh----CCc-e--
Q 007119 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF----GGR-V-- 439 (617)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~----~~~-v-- 439 (617)
++. ..+.|.|-+....+++|.+++.-..+..+..+...+++ |.. +
T Consensus 382 -------------------------~p~---a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~ 433 (1363)
T KOG3628|consen 382 -------------------------DPK---ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKV 433 (1363)
T ss_pred -------------------------Ccc---cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcce
Confidence 000 01123333334457999999999999888776554432 221 1
Q ss_pred ---------------eccccccccccccccCCCCC------------------------------CCCCCcCCCCcC-eE
Q 007119 440 ---------------TEGYGMTETSCLISQLDEGD------------------------------NLSGHVGSPNAA-CE 473 (617)
Q Consensus 440 ---------------~~~YG~TE~~~~~~~~~~~~------------------------------~~~~~vG~p~~~-~~ 473 (617)
...=+++|.+...-..+... .....+|...|+ +.
T Consensus 434 ~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t 513 (1363)
T KOG3628|consen 434 VDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDAT 513 (1363)
T ss_pred eechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceE
Confidence 11112345443322221100 002235665554 56
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC------------CCCeeeecceEEEecCCcEEEE
Q 007119 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------EDGWFHTGDIGMWIPGGRLKII 541 (617)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------------~~gw~~TGDlg~~~~dG~l~i~ 541 (617)
+.+++++....|..++ +|||||.+++..++||.-+..|...|. ...|+|||=+|++. +|.++++
T Consensus 514 ~~vv~~~t~~LC~~~e---VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl 589 (1363)
T KOG3628|consen 514 LAVVNPDTNQLCKTDE---VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVL 589 (1363)
T ss_pred EEEeCCCcccccccCc---ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEE
Confidence 6677766666666665 999999999999999988877777761 12389999999995 6667777
Q ss_pred ecCCCeeecCCeeeechH----------HHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCH
Q 007119 542 DRKKNIFKLAQGEYIAAE----------KIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQ 593 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~----------~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~ 593 (617)
|-++|++.--.|.+++.. -|+-+++..+.|-++.++- +++.+.+++-+|
T Consensus 590 ~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP 648 (1363)
T KOG3628|consen 590 GLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESP 648 (1363)
T ss_pred EechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCc
Confidence 766666654356665543 3566778888888988886 344444444444
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-14 Score=145.02 Aligned_cols=256 Identities=17% Similarity=0.212 Sum_probs=158.9
Q ss_pred eEEEEeccCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeC--ChHHHHHHHHHHHHHHh-CcEEEEec--
Q 007119 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYL--PLAHIYERANQVMTVYS-GVAVGFYQ-- 329 (617)
Q Consensus 258 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~l--Pl~h~~~~~~~~~~l~~-G~~~~~~~-- 329 (617)
-..+..||||||.|-.+..+............. ..++..++++...+ +. +.+.. +.. ...+-+++
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly~~------~~~~~~~~~~~~l~ 173 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLYQS------VNNRWISLDFFDLL 173 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHHHH------HHhccceeeecCCC
Confidence 345777999999999999998875433322211 13445555544442 11 22211 111 11133333
Q ss_pred CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhh
Q 007119 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409 (617)
Q Consensus 330 ~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~ 409 (617)
.+....++.|++++||++.+.|+.+..|.+.+.....
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l------------------------------------------- 210 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL------------------------------------------- 210 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------------
Confidence 5678899999999999999999999998875332100
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCC
Q 007119 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489 (617)
Q Consensus 410 g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~ 489 (617)
.-+++.++++|++++++..+.+++.||++|++.||+|| +.+++.+..+. -++-...--+|..++|++ +
T Consensus 211 ~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD~~-------~- 278 (430)
T TIGR02304 211 TIKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLDEH-------K- 278 (430)
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEECCC-------C-
Confidence 02689999999999999999999999999999999999 44333222111 111111112344466621 1
Q ss_pred CCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC----Cc----E-EEEecCCCeeec--CCeee--e
Q 007119 490 PCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GR----L-KIIDRKKNIFKL--AQGEY--I 556 (617)
Q Consensus 490 ~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~----l-~i~gR~~d~ikl--~~G~~--i 556 (617)
.++.+|+ ++.|. ++ +==-|+|||++.+.++ |. | .|.||.+|++++ .+|.. |
T Consensus 279 ---~~~~ViT------~L~n~------~~-PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v 342 (430)
T TIGR02304 279 ---RFVPIIT------DFTRT------TQ-PIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTV 342 (430)
T ss_pred ---ceEEEEe------cCCCc------cc-eEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEe
Confidence 2333333 33221 11 1013899999988544 32 4 488999999984 45655 4
Q ss_pred chHHHHHHH-hcCCCcceEEEEeeCCCCeEEEEEEeC
Q 007119 557 AAEKIENVY-AKCKFVGQCFVYGDSFNSALVAIVSVD 592 (617)
Q Consensus 557 ~p~~IE~~l-~~~p~V~~~~V~g~~~~~~~va~vv~~ 592 (617)
+|..++..+ ...+.|.+.-++... ...+..-+++.
T Consensus 343 ~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~ 378 (430)
T TIGR02304 343 FPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCE 378 (430)
T ss_pred CHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeC
Confidence 999999885 567899888777554 44444444443
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-14 Score=145.23 Aligned_cols=85 Identities=22% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCeeeecceEEE-ecCCcEEEEecCCCeeecCCe---eeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-
Q 007119 520 EDGWFHTGDIGMW-IPGGRLKIIDRKKNIFKLAQG---EYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV- 591 (617)
Q Consensus 520 ~~gw~~TGDlg~~-~~dG~l~i~gR~~d~ikl~~G---~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~- 591 (617)
.||||+|||+|++ |+||+|+|+||.| +| ++|+|+ ||+++.+||+|.+|+|+|.+++ +.++|+|++
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~ 279 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE 279 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence 7899999999998 6999999999998 67 899999 9999999999999999998764 578999985
Q ss_pred ---CHHHHHHHHHHcCCCCChhhh
Q 007119 592 ---DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 592 ---~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+.+++.+||+++... ++|..
T Consensus 280 ~~~~~~el~~~l~~~L~~-kvP~~ 302 (365)
T PRK09188 280 LPADEKSLRARLAGAKPP-KPPEH 302 (365)
T ss_pred CCCCHHHHHHHHHhhchh-cCCcE
Confidence 468899999998776 77753
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-07 Score=93.99 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=135.5
Q ss_pred CCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC----cccCC-CcEEEEeCChHHH----HHHHH-HHHHHHhCc
Q 007119 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG----TKFYP-SDVYISYLPLAHI----YERAN-QVMTVYSGV 323 (617)
Q Consensus 254 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~-~d~~l~~lPl~h~----~~~~~-~~~~l~~G~ 323 (617)
.++++..++-||||||.|--+.+.+..+.....++... ..... .-.++...|-... ..... .+..+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 34567788889999999866666666655554333222 11111 2233444443221 11111 222334455
Q ss_pred EEEEec--CChhhHHHHHH----hhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 324 AVGFYQ--GDNMKLMDDMA----ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 324 ~~~~~~--~~~~~l~~~i~----~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
...+-. .|...+++.+. ..+|..+++.|.++-.+...+.....+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~------------------------------ 216 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR------------------------------ 216 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc------------------------------
Confidence 523311 46666666553 567899999998776665532221100
Q ss_pred hHHhHHHHHHhhCCceEEEEEcC------CCCc-HHHHHHHHHhhCC----ceeccccccccccccccCCCCCCCCCCcC
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGA------SPLS-PDVLDFLKICFGG----RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gg------a~l~-~~~~~~~~~~~~~----~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (617)
=.+....+.+-.|| +.++ .++.+.+++.||+ ++++.|||||.....+..... .
T Consensus 217 ---------~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~-----~-- 280 (365)
T PF04443_consen 217 ---------FRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG-----H-- 280 (365)
T ss_pred ---------ccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC-----c--
Confidence 00112456666665 3465 5677788888997 699999999976543332111 1
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC--------CcE
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG--------GRL 538 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d--------G~l 538 (617)
.+.|-. +.|+|+.+..+++.|+ .|-|.+-.+... . .-+..-|.|+|.+..+ .++
T Consensus 281 ~~~p~w-V~iRDp~tl~~~~~Ge---~Gli~vidl~~~-s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f 342 (365)
T PF04443_consen 281 FHVPPW-VIIRDPETLEPLPPGE---TGLIQVIDLANT-S-------------YPGFILTEDLGVLHGDDDCGCRKGKYF 342 (365)
T ss_pred ccCCCe-EEEECCCCCcCCCCCC---eeEEEEEccccc-C-------------CCcEEEEcceeeecCCCCCCCccCCEE
Confidence 122222 7778988888888887 898888766432 1 2344779999988654 279
Q ss_pred EEEecCCCee
Q 007119 539 KIIDRKKNIF 548 (617)
Q Consensus 539 ~i~gR~~d~i 548 (617)
.|+||.+.-=
T Consensus 343 ~vlGR~~~ae 352 (365)
T PF04443_consen 343 EVLGRADGAE 352 (365)
T ss_pred EEEeCCCCCc
Confidence 9999998654
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00019 Score=78.11 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhC--CceeccccccccccccccCCCCCCCCCCcCCCCcCe-EEEEeecCCCC----
Q 007119 411 GRVRFMGSGASPLSPDVLDFLKICFG--GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC-EIKLVDVPEMN---- 483 (617)
Q Consensus 411 ~~lr~i~~gga~l~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~v~ivd~~~~~---- 483 (617)
++|+++.+-+..-...-...++..+| ..+..+|+.||+...+-. .+.+ . .+.+.++. =+..++.++..
T Consensus 267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~-~~~~--~--~~~l~~~~~ffEFip~~~~~~~~~ 341 (528)
T PF03321_consen 267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPL-DPED--P--GYVLAPDSGFFEFIPVDEDEQNPS 341 (528)
T ss_dssp TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC------EEE-TTSSEEEEEE-STT-----
T ss_pred CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEec-CCCC--C--ceEeecCCeEEEEEeccCCccccc
Confidence 47885555443334455666777775 335679999997432222 1111 1 11222221 23344433321
Q ss_pred ----CCC--CCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEe--cCC--cEEEEecCCCeeecCCe
Q 007119 484 ----YTS--EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI--PGG--RLKIIDRKKNIFKLAQG 553 (617)
Q Consensus 484 ----~~~--~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~--~dG--~l~i~gR~~d~ikl~~G 553 (617)
.+. +-+.+..-||.|... .|.| -|+.||+.++. .++ .+.|+||.+.++.+ .|
T Consensus 342 ~~~~~l~~~ele~G~~YelviTt~---~GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g 403 (528)
T PF03321_consen 342 EQPKTLLLHELEVGEEYELVITTN---SGLY--------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG 403 (528)
T ss_dssp --SSSEEGGG--TT-EEEEEEEST---TS-S--------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred CCCceecHHHhcCCCeEEEEEecc---ccee--------------eeecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence 110 011112566777653 2222 28999999985 345 69999999999998 79
Q ss_pred eeechHHHHHHHhcC-----CCcceEEEEeeC---CCCeEEEEEEe
Q 007119 554 EYIAAEKIENVYAKC-----KFVGQCFVYGDS---FNSALVAIVSV 591 (617)
Q Consensus 554 ~~i~p~~IE~~l~~~-----p~V~~~~V~g~~---~~~~~va~vv~ 591 (617)
|+++-.+|++++.+. -.+.+-++..+. ....-+-++.+
T Consensus 404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~ 449 (528)
T PF03321_consen 404 EKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWEL 449 (528)
T ss_dssp --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEE
T ss_pred eecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEe
Confidence 999999999999664 335566666662 23455555554
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=1e-05 Score=62.68 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCHHHHHHHHHHcCCCCChh
Q 007119 560 KIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQDALKAWAASEGIQSLAP 610 (617)
Q Consensus 560 ~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~~~~~~~~~~~~~~~~~~ 610 (617)
|||+++.+||+|.+|+|+|.++. +.++|+|+++.+++++|++++...++.|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVLDEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEHHHHHHHHHHHHS-GGGS-
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEeeecccccchhhhCCCccee
Confidence 79999999999999999998754 5899999997799999999986667777
|
... |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0028 Score=69.31 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=37.5
Q ss_pred eeecceEEEec----CCcEEEEecCCCeeecCCeeeechHHHHHHHhc
Q 007119 524 FHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (617)
Q Consensus 524 ~~TGDlg~~~~----dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~ 567 (617)
|+.||+.++.. -=.|.|+||.+.++.+ .||++.-++++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceec-ccccCCHHHHHHHHHH
Confidence 89999999852 2359999999999997 8999999999998866
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0078 Score=65.37 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=37.2
Q ss_pred eeecceEEEe----cCCcEEEEecCCCeeecCCeeeechHHHHHHHhcC
Q 007119 524 FHTGDIGMWI----PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKC 568 (617)
Q Consensus 524 ~~TGDlg~~~----~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~ 568 (617)
||.||+.++. ..-.|.|++|.+.+..+ .||+.+-+++-+++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHHH
Confidence 8899998874 33469999999999998 89999999998888553
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.077 Score=57.75 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=36.5
Q ss_pred eeecceEEEe----cCCcEEEEecCCCeeecCCeeeechHHHHHHHhc
Q 007119 524 FHTGDIGMWI----PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (617)
Q Consensus 524 ~~TGDlg~~~----~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~ 567 (617)
||.||+.++. ..-.|.|++|.+.+..+ .||+.+-+++-+++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSI-DSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence 8899998874 33469999999999998 8999999999887744
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.21 Score=52.02 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=75.6
Q ss_pred eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccE
Q 007119 111 YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188 (617)
Q Consensus 111 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 188 (617)
...+|+.|+...+..+|+.|...|..+||+|.++..-+. .-+-..+|+.++|++++|+.+. .-+....++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence 345799999999999999999999999998887776221 1167889999999999999883 3556778899999999
Q ss_pred EEecccchHHHHhhcc
Q 007119 189 VFCVPQTLNSLLSCLS 204 (617)
Q Consensus 189 vi~~~~~~~~l~~~~~ 204 (617)
|.+.++.+-.+.+...
T Consensus 186 I~~tps~~l~lae~~~ 201 (438)
T COG1541 186 IAATPSYLLYLAEEAE 201 (438)
T ss_pred EEEChHHHHHHHHHHH
Confidence 9999988766655443
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.01 E-value=5.7 Score=42.16 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=77.8
Q ss_pred cCccCcee--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 007119 105 DGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (617)
Q Consensus 105 d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i 180 (617)
.|+.|..+ .+|..++......++..+...|+++||++........ ......+++...|+.++++.... .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 56655533 4577777777777778888889999998877665442 22234677889999999887654 5778889
Q ss_pred HHhccccEEEecccchHHHHhhccC------CCCceEEEEECC
Q 007119 181 VNHASVQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGG 217 (617)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l~~~~~~------~~~~~~iv~~~~ 217 (617)
|++.++.++++.+..+..+.+.... ...++.++.-++
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge 205 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAE 205 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCC
Confidence 9999999999998877655443211 134666655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=86.58 E-value=7.6 Score=41.62 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=68.1
Q ss_pred cCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 007119 105 DGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (617)
Q Consensus 105 d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i 180 (617)
.|+.|. ...+|..++...+...+..+...|+.+||++.++.+.... .....+++...|+.++|... .+....+
T Consensus 95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~ 171 (445)
T TIGR03335 95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI 171 (445)
T ss_pred CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence 555554 3457889999888888888888999999999988876543 23456788999998877643 2345678
Q ss_pred HHhccccEEEecccchHHH
Q 007119 181 VNHASVQAVFCVPQTLNSL 199 (617)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l 199 (617)
+++.++.++++....+..+
T Consensus 172 i~~~~~t~l~~~ps~ll~L 190 (445)
T TIGR03335 172 IESYRPTGIVASVFKLLRL 190 (445)
T ss_pred HHHhCCCEEEECHHHHHHH
Confidence 8899999998877654443
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 617 | ||||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-24 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-23 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-22 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-22 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-22 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-22 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 4e-21 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 4e-21 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 4e-21 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-20 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 3e-20 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 4e-20 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-20 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 5e-20 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-19 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 8e-19 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 4e-14 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 5e-14 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 1e-12 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 2e-12 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 8e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-11 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 4e-11 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 8e-11 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 9e-11 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-10 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 8e-10 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 7e-08 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-07 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-06 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 8e-06 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-05 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-05 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-05 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 9e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-04 |
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 1e-79 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 3e-78 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 4e-78 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 2e-77 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 2e-76 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 7e-76 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 1e-73 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 2e-73 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 4e-73 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 6e-71 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-70 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 4e-69 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 3e-68 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 3e-67 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 4e-67 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 2e-50 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 4e-41 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 3e-34 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 4e-34 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 2e-32 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 2e-31 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 2e-12 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 4e-09 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 3e-08 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 8e-08 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 3e-07 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 3e-07 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 6e-07 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 1e-79
Identities = 118/507 (23%), Positives = 187/507 (36%), Gaps = 91/507 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E V + L+ G+ G + E L++ A + +PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ Y + A + V C P + + + ++V + G
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ ++ + DD+A I YTSGTTG KGA+LSH NL ++ +
Sbjct: 135 -SLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLM---DDMAAL----RPTV 346
F P DV I LP+ H + + V V + +M + D L R TV
Sbjct: 193 FTPDDVLIHALPIYHTHG-----LFV--ASNVTLFARGSMIFLPKFDPDKILDLMARATV 245
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP Y R+ SP +
Sbjct: 246 LMGVPTFYTRLLQ----------------------------------SPRLTKETT---- 267
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
G +R SG++PL D G V E YGMTET+ S +GD + G VG
Sbjct: 268 ----GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
++ D PE + PR G I V+GP +FKGY++ +TK +DG+
Sbjct: 324 PALPGVSARVTD-PET-----GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF 377
Query: 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DS 580
F TGD+G G + I+ R K++ + G + ++IE+ V + V G
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD 436
Query: 581 FNSALVAIV------SVDQDALKAWAA 601
F + A+V ++D+ +
Sbjct: 437 FGEGVTAVVVRDKGATIDEAQVLHGLD 463
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 3e-78
Identities = 104/494 (21%), Positives = 183/494 (37%), Gaps = 75/494 (15%)
Query: 70 SRFPDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P E G+ + ++ + LG + G +Y E +G
Sbjct: 13 GPKPFYPIEEGSAGTQLRKYMERYAK---LGAIAFTNAVTGVD--YSYAEYLEKSCCLGK 67
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
L +G+ I L N E+ I A P + + + + +
Sbjct: 68 ALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L+ +++ V T++ IV++ D ++ + + S+ +
Sbjct: 128 VFSSKKGLDKVITVQKTVTTIKTIVIL---DSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
+ + VA I +SG+TG PKG L+H N++ + G + P ++ +P
Sbjct: 185 TVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + ++ D + T VP L+
Sbjct: 245 FHHGF-----GMFT---TLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
+ + LS + +
Sbjct: 297 L--------------------NKSELLNKYDLS----------------------NLVEI 314
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F V +GYG+TET+ I EGD+ G G + K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAK 374
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
++D+ ++ GE+CV+GP++ KGY + TKE+IDE+GW HTGDIG +
Sbjct: 375 VIDLDTKKSLGPNRR---GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431
Query: 536 GRLKIIDRKKNIFK 549
I+DR K++ K
Sbjct: 432 KHFFIVDRLKSLIK 445
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 4e-78
Identities = 102/496 (20%), Positives = 172/496 (34%), Gaps = 78/496 (15%)
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRV-RVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P T + + Y + + D + +TY E +
Sbjct: 10 GPAPFYPLEDGTAGEQLH--KAMKRYALVPGTIAFTDAHIEVN--ITYAEYFEMSVRLAE 65
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
+ +G++ I + N ++ + P D + +N +
Sbjct: 66 AMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L +L+ ++P ++ I+++ D + +T +
Sbjct: 126 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD---YQGFQSMYTFVTSHLPPGFNEYDFV 182
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
P S + +A I +SG+TG PKG L H + G + P +S +P
Sbjct: 183 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + LM + + VP L++
Sbjct: 243 FHHGF-----GMFT---TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
A + LS + +
Sbjct: 295 F--------------------AKSTLIDKYDLS----------------------NLHEI 312
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG E K
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 372
Query: 476 LVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
+VD + T + RGE+CVRGP+I GY + T +ID+DGW H+GDI W
Sbjct: 373 VVD-LD---TGKTLG-VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 534 PGGRLKIIDRKKNIFK 549
I+DR K++ K
Sbjct: 428 EDEHFFIVDRLKSLIK 443
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 2e-77
Identities = 98/505 (19%), Positives = 173/505 (34%), Gaps = 89/505 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + L GI+KG + L N E+ + + + ++VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
V +I++ + + V + + + ++ + G D
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS------------- 150
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ L + +P DD I YTSGTTG PKG V +H ++ ++ +
Sbjct: 151 --LAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCS 349
D + LP+ H+ + + GV + F D K+ + R + +
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQF---DATKVWSLIVEERVCIGGA 264
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP + M P + L
Sbjct: 265 VPAIL------------------------------NFMRQ----VPEFAELDA------- 283
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
R+ +G +P+ ++ V +GY +TE+ + L D L G G
Sbjct: 284 -PDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR 341
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
++ + + GE+ ++ ++ K Y+ T++ D +GWF
Sbjct: 342 ATMFTDVAVRG-------DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFR 393
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG---DSF 581
TGDIG G L I DR K++ GE + AE IE+V V + V G + +
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMIISG-GENVYPAE-IESVIIGVPGVSEVAVIGLPDEKW 451
Query: 582 NSALVAIV-----SVDQDALKAWAA 601
AIV V + + +
Sbjct: 452 GEIAAAIVVADQNEVSEQQIVEYCG 476
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 2e-76
Identities = 122/510 (23%), Positives = 183/510 (35%), Gaps = 103/510 (20%)
Query: 57 NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
++RS + + P+ H + + L ++G G+ TY
Sbjct: 7 FIFRSKLPDIYI-------PKNLPLHSYVLENLSNHSSKPCL-----INGANGDV--YTY 52
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
+ V SGL GI +G I L+ + PE+++ S I P
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236
+ + + + + E V+++ V D L +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDG------------CLHF 159
Query: 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGT 292
S L + PDDV + Y+SGTTG PKG +L+H LI SVA G
Sbjct: 160 SELTQADENEAPQV-DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------R 343
F+ DV + LP+ HIY + + G G + +M ++ +L +
Sbjct: 219 YFHSEDVILCVLPMFHIY-----ALNS--IMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
++ VP + I A + LS
Sbjct: 272 VSIAPVVPPVMMSI--------------------AKSPDLDKHDLS-------------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-----CLISQLDE 457
+R + SG +PL ++ D R+ +GYGMTE CL +
Sbjct: 298 --------SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349
Query: 458 GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTK 515
D G G+ E+K+VD PE T P GEIC+RG I KGY D T
Sbjct: 350 FDIKPGACGTVVRNAEMKIVD-PE---TGASLP-RNQPGEICIRGDQIMKGYLNDPEATS 404
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
ID++GW HTGDIG L I+DR K
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLK 434
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 250 bits (642), Expect = 7e-76
Identities = 97/505 (19%), Positives = 180/505 (35%), Gaps = 103/505 (20%)
Query: 70 SRFPD--HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWM----TYGEAGTAR 123
FP +P+I + D A + F + + + + E
Sbjct: 9 IGFPSLYYPKI-SLADRIDAAAEKFGEKTAI-----ISAEPKFPSEFPESMNFLEICEVT 62
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
++ SG+ G+ KG +G+ N ++++ +A + VP+ +++I+N
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILND 122
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
+ + + L + V + V+GG ++ + S ++ G
Sbjct: 123 SEATTLVVHSMLYENFKPVLEKTG-VERVFVVGG--------------EVNSLSEVMDSG 167
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
+ + +DVA I YT GTTG PKG +L+H NL A+ + T D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGC 227
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLY 354
+P+ H E + V + G+ +M + L + T +VP
Sbjct: 228 MPMFHSAE-----FGL---VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
N ++ ++ + +
Sbjct: 280 N------------------------------VLV--NTLESSNKTYDWSYL--------K 299
Query: 415 FMGSGASPLSPDVLDFLKICFGGR-------VTEGYGMTETSCLIS-QLDEGDNLSGHVG 466
+GA P++P +++ L + + +GMTE +++ + S G
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQG 359
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVI----DE 520
P + E+K++ E + GEI +RGP IFKGY+K E + +E
Sbjct: 360 VPMSDIELKVIS-LE---DGRELG-VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKK 545
+F TGD+G G L DR K
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDRVK 439
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 1e-73
Identities = 112/510 (21%), Positives = 177/510 (34%), Gaps = 95/510 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E A +G I + ++ E + A +VPL G
Sbjct: 49 LTYAELAAA-----AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I++ ++ V P +E+P + +D +
Sbjct: 104 DKELAHILSDSAPSLVLAPPD---------AELPPALGALERVDVDVRARGAV------- 147
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
P D A + YTSGTTG PKGAV+ L ++ +
Sbjct: 148 ---------------PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 294 FYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351
+ DV + LPL H++ ++ + G +V ++ T+ VP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVP 251
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
+Y+RI + L + L
Sbjct: 252 TMYHRIAE----TLPADPELAKAL-----------------------------------A 272
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R + SG++ L + + G RV E YGMTET S +G+ +G VG P
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E++LV+ + + GEI VRGP +F Y T EDG+F TGD+ +
Sbjct: 333 VELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAV 391
Query: 532 WIPGGRLKIIDRK-KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVA 587
P G ++I+ RK ++ K G I A +IEN + V + V G +VA
Sbjct: 392 RDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450
Query: 588 IV-------SVDQDALKAWAASEGIQSLAP 610
+ L A LAP
Sbjct: 451 WIVPADPAAPPALGTLADHVA----ARLAP 476
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 2e-73
Identities = 102/507 (20%), Positives = 181/507 (35%), Gaps = 95/507 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ + + SGL+ G+ G + + N E + + A + I +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D + +++ + V + + L + V+ IG
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAP--------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ +L S PFS P+ D I +T+ G P+GA++S GNL+ + +
Sbjct: 143 --FKDLASDT-----PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVF 347
+ +DV + LPL H+ + +G A F D + D+ A + TV
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF---DPAQAARDIEAHKVTVM 252
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
+ +L +L
Sbjct: 253 AEFAPML------------------------------GNIL----DQAAPAQL------- 271
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+R + +P + + + C +G +ETS L + D G
Sbjct: 272 ---ASLRAVTGLDTPETIERFE--ATCPNATFWATFGQSETSGLSTFAPYRDRP-KSAGR 325
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
P + +VD +ED+P P GEI +RGP +FKGY+ + T+ +GW
Sbjct: 326 PLFWRTVAVVD-------AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWH 377
Query: 525 HTGDIGMWIPGGRLKIIDR--KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---D 579
HTGD+G + G L R +K + K GE + ++E + + V G
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVPDP 436
Query: 580 SFNSALVAIV------SVDQDALKAWA 600
++ A+ A+ S+ DAL +
Sbjct: 437 QWSEAIKAVCVCKPGESIAADALAEFV 463
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 4e-73
Identities = 91/501 (18%), Positives = 172/501 (34%), Gaps = 82/501 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY + + L + S +GLY N + +I+ HAC + + L
Sbjct: 27 YTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLT 83
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
P+ + + VQ +FC + L ++ + G+ D + T
Sbjct: 84 PNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT-- 141
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ ++ + + + DD+A+I +TSGTTG K + N AS G
Sbjct: 142 ---SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES 198
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSV 350
F ++S LP+ HI + + V G V + +++ + R T V
Sbjct: 199 LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLV 258
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P+ ++ + +
Sbjct: 259 PQTL------------------------------NWLMQ----QGLHEPY---------- 274
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
++ + G + LS +++ L+ + + +GMTET + VG
Sbjct: 275 -NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P+A ++K+ + GE+ ++G + GY E+G+F+TG
Sbjct: 332 PSANVDVKIKN---------PNKEGHGELMIKGANVMNGYLYPT-DLTGTF-ENGYFNTG 380
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG---DSFNS 583
DI G + I DR+K++ + GE I + IE V + + G D++
Sbjct: 381 DIAEIDHEGYVMIYDRRKDLII-SGGENIYPYQ-IETVAKQFPGISDAVCVGHPDDTWGQ 438
Query: 584 ALVAIV----SVDQDALKAWA 600
+ + L A+
Sbjct: 439 VPKLYFVSESDISKAQLIAYL 459
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 6e-71
Identities = 91/516 (17%), Positives = 163/516 (31%), Gaps = 99/516 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ E V + L G+ + + N + +I A + L L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ ++ + A + + + + I+ +G D P + G I
Sbjct: 90 SAELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLG--DLVRDGEPYSYGPPI 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
+P A I YTSGTTG PK A++ +G
Sbjct: 146 ---------------EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG 190
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALR 343
+ +V + +PL H+ + + +A+ F + + + +
Sbjct: 191 LRHGRHNVVLGLMPLYHVVG---FFAVLVAALALDGTYVVVEEF---RPVDALQLVQQEQ 244
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + P + L AA +A L
Sbjct: 245 VTSLFATPTHLDA------------------LAAAAAHAGSSLKLD-------------- 272
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
+R + + + VL+ + G YG TE + G
Sbjct: 273 --------SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---G 321
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGP-LIFKGYYKDEIQTKEVID 519
+P E+++V D+ GE+ V F GY T E +
Sbjct: 322 TEMAPGFFSEVRIVR-IG---GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG 578
DGW+ T D+ +W P G ++I+ R ++ + GE I +E IE V V + V G
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMII-SGGENIHPSE-IERVLGTAPGVTEVVVIG 434
Query: 579 ---DSFNSALVAIV------SVDQDALKAWAASEGI 605
+ ++ A V ++ DAL + S +
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 1e-70
Identities = 89/458 (19%), Positives = 147/458 (32%), Gaps = 66/458 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TYGE S L G+ I L ++ + + V L
Sbjct: 49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P Y++ H+ +AV + ++ L +++ + P L
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRL-------A 161
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGT 292
+ L+ + + DD+A Y+SG+TG PKG V +H NL + A
Sbjct: 162 PLFEELIDAAAPAAKA-AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 293 KFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCS 349
+DV S L Y N + + G + + RPTVF
Sbjct: 221 GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG 280
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP LY ML N D
Sbjct: 281 VPTLYA------------------------------NMLVSPNLPARADV---------- 300
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+R S L ++ + FG + +G G TE + G G G P
Sbjct: 301 --AIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV 358
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
EI+L D P G++ ++GP Y+ + +++ W +
Sbjct: 359 PGYEIELRD-------EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRS 410
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
GD +P G R ++ K++ G+Y++ ++E V
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMV 447
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 4e-69
Identities = 120/553 (21%), Positives = 211/553 (38%), Gaps = 98/553 (17%)
Query: 25 SSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV--SRFPD--HPEIGT 80
SS H+ ++G + + P++ + +S+ + ++ S+ PD P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNHLS 62
Query: 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC 140
HD + + F L ++G G TY + ++ + G+++
Sbjct: 63 LHDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDV 115
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+ L N PE+++ A S + P + ++ + + + ++ +
Sbjct: 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIK 175
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDV 258
++ V ++ + IP L ++ L + + PDDV
Sbjct: 176 PLQNDDG-VVIVCIDDNESVPIPE-------GCLRFTELTQSTTEASEVIDSVEISPDDV 227
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ Y+SGTTG PKG +L+H L+ SVA G F+ DV + LP+ HIY
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY---- 283
Query: 315 QVMTVYSGVAVGFYQGDNMKLM-----DDMAAL----RPTVFCSVPRLYNRIYAGITSAV 365
+ + G G + +M + + L + TV VP
Sbjct: 284 -ALNSI--MLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-------------- 326
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-GRVRFMGSGASPLS 424
P+ + + +K +R + SGA+PL
Sbjct: 327 -----------------------------PIVLAIAKSSETEKYDLSSIRVVKSGAAPLG 357
Query: 425 PDVLD-FLKICFGGRVTEGYGMTETSCLIS-----QLDEGDNLSGHVGSPNAACEIKLVD 478
++ D ++ +GYGMTE +++ + SG G+ E+K+VD
Sbjct: 358 KELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD 417
Query: 479 VPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
P+ T + GEIC+RG I KGY + T E ID+DGW HTGDIG+
Sbjct: 418 -PD---TGDSLS-RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 537 RLKIIDRKKNIFK 549
L I+DR K + K
Sbjct: 473 ELFIVDRLKELIK 485
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 3e-68
Identities = 90/470 (19%), Positives = 158/470 (33%), Gaps = 87/470 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E A + L GI G + N E I A V +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + Q L + ++E ++R++ ++ +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-------- 162
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ ++ + +P D+VA + GTTGTPK +H + SV +
Sbjct: 163 -----HNLQDAINHPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+F Y+ +P AH Y M+ G F G + L D +
Sbjct: 217 VEICQFTQQTRYLCAIPAAHNY-----AMSS-PGSLGVFLAGGTVVLAADPSATLCFPLI 270
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ V VP + A + +A L+
Sbjct: 271 EKHQVNVTALVPPAVSL------------------WLQALIEGESRAQLA---------- 302
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
++ + G + LS + + G ++ + +GM E ++LD+
Sbjct: 303 ------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350
Query: 460 NL-SGHVGSPNA-ACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
G P E+ + D E P P+ G + RGP F+GYYK
Sbjct: 351 EKIIHTQGYPMCPDDEVWVADA-------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
D +G++ +GD+ P G + + R+K+ GE IAAE+IEN+
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENL 452
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 3e-67
Identities = 92/470 (19%), Positives = 156/470 (33%), Gaps = 91/470 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+Y E T + +G GI + + + N E+ V A + V +
Sbjct: 51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ Y A A S++PT++ I+V G ++ +P
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
L + K DVA + + G+TG K +H + I S+ +
Sbjct: 166 -----------LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
S VY++ LP+AH Y ++ GV Y G + L +
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNY-----PLSSP-GVLGVLYAGGRVVLSPSPSPDDAFPLI 268
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ T+ VP L + + R
Sbjct: 269 EREKVTITALVPPLA------------------------------MVWMD----AASSRR 294
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + S + +K FG + + +GM E ++L D
Sbjct: 295 DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE 346
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P + E ++ D D+ G + RGP +GYYK E
Sbjct: 347 EIIVNTQGKPMSPYDESRVWD-------DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
EDG++ TGDI G + + R K+ GE +AAE++EN
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENH 448
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 4e-67
Identities = 78/470 (16%), Positives = 154/470 (32%), Gaps = 87/470 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E T + + L G+ KG + N E+ IV A + + +
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + + Q + S + +I+++ L
Sbjct: 116 QYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL--- 172
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ + FS D+VA + G+TGTPK +H + SV +
Sbjct: 173 ---------DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS 223
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+ + LP H + +++ G + G + + + +
Sbjct: 224 AEICGLNSNTRLLCALPAPHNF-----MLSSP-GALGVLHAGGCVVMAPNPEPLNCFSII 277
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ + VP L +
Sbjct: 278 QRHQVNMASLVPSAV------------------------------IMWLE----KAAQYK 303
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + + + ++ + +GM E ++L D
Sbjct: 304 DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSD 355
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P ++ EIK+VD + + P G + RGP F GYY+
Sbjct: 356 EQIFTTQGRPISSDDEIKIVD-------EQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+V DED ++++GD+ P G L+++ R K+ GE IA+E+IE +
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKL 457
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-50
Identities = 115/510 (22%), Positives = 177/510 (34%), Gaps = 114/510 (22%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA F V GE TY E R + GL G+ G +
Sbjct: 26 RAAALFGR-----KEVVSRLHTGEVHRTTYAEVY-QRARRLMGGLRALGVGVGDRVATLG 79
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N L A + L P + YI+NHA + + P L + + E
Sbjct: 80 FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE 139
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD----DVATI 261
+ TV+ VV+ + L Y L + +
Sbjct: 140 LKTVQHFVVMD--EKAPEGY--------LAYEEALGEE--------ADPVRVPERAACGM 181
Query: 262 CYTSGTTGTPKGAVLSH-GN-LIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
YT+GTTG PKG V SH L + A GT DV + +P+ H N
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH----VNAWCLP 237
Query: 320 YSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
Y+ VG + L++ T VP ++ + + ++G
Sbjct: 238 YAATLVGAKQVLPGPRLDPAS--LVELFDGEGVTFTAGVPT----VWLALADYLESTGH- 290
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-F 430
+L R + G S ++ F
Sbjct: 291 ------------------------------------RLKTLRRLV-VGGSAAPRSLIARF 313
Query: 431 LKICFGGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDV 479
+ G V +GYG+TETS ++ Q +E L G P +++ D
Sbjct: 314 ER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD- 370
Query: 480 PEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534
E P P+ GE+ ++GP I GYY +E T+ + DG+F TGDI +W
Sbjct: 371 EEGR------PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
Query: 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G ++I DR K++ K + GE+I++ +EN
Sbjct: 425 EGYVEIKDRLKDLIK-SGGEWISSVDLENA 453
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-41
Identities = 71/437 (16%), Positives = 139/437 (31%), Gaps = 75/437 (17%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ + E + + L G+ +G + + PEW +V C I +P
Sbjct: 69 GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
+ + Y + + +A+ + + + + SE P++R+ +++
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD------ 182
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
L + LL S + + I +TSGT+G PK A S+ +L
Sbjct: 183 ----GWLNFKKLL-NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM 237
Query: 288 ATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQGDNM---KLMDDMAALR 343
T SD+ + I +M G + ++ +++
Sbjct: 238 DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYP 297
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
P +Y R+ Q LS
Sbjct: 298 IKSMMGAPIVY-------------------RML-------LQQDLSSYKFP--------- 322
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
++ + L P+ L+ + G + E YG TET G
Sbjct: 323 --------HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG-----PLIFKGYYKDEIQTK 515
++G+ + +++++D + P G+I +R IF GY + +T
Sbjct: 375 YMGTAASCYDVQIID-------DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427
Query: 516 EVIDEDGWFHTGDIGMW 532
I ++ GD G+
Sbjct: 428 ANI-RGDFWLLGDRGIK 443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-34
Identities = 81/456 (17%), Positives = 153/456 (33%), Gaps = 109/456 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G K T+ + + + + HGI KG + L +R ++ I+VP
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
L + Y + A ++ + C VP+ ++ + ++P + V ++ I
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPP---KPDDVATICYTSGTTGTPKGAVLSHGN 280
+ L + + + K +D+ + ++SGT G PK +
Sbjct: 202 ------------FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY 249
Query: 281 LIASVAGATLGTKFYPSDVY-----------ISYL---PLAHIYERANQVMTVYSGVAVG 326
+ + A ++ + G AV
Sbjct: 250 PLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA-------------GCAVF 296
Query: 327 FYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
Y + +++ + T FC+ P +Y R
Sbjct: 297 VYDYDRFEAKNMLEKASKYGVTTFCAPPTIY-------------------RFL------- 330
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGY 443
+ LS N S + ++ PL+P+V + G ++ EG+
Sbjct: 331 IKEDLSHYNFSTL-----------------KYAVVAGEPLNPEVFNRFLEFTGIKLMEGF 373
Query: 444 GMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
G TET I+ + G +G P +I+L+D + + C GEI +
Sbjct: 374 GQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-------RDGRLCEVGEEGEIVINT 426
Query: 501 ----PL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
P+ +F Y KD +T+E DG++HTGD+
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAW 461
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 94/492 (19%), Positives = 160/492 (32%), Gaps = 120/492 (24%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + + + L G G + L F + C I+VP+Y
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 174 PDA---VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230
+ IV ++ V + + + D++ + P
Sbjct: 101 EKLLDKAQRIVTNSKPVIVLMIADHIKKFTA------------------DELNTNPKFLK 142
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
+ + ++ S+ QP + K +D+A + YTSG+T PKG ++SH NL+ ++
Sbjct: 143 IPAIALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ S+LP H M + + Y G +M P F
Sbjct: 202 SFHMNDETIIFSWLPPHH-------DMGLIGCILTPIYGGIQAIMM------SPFSFLQN 248
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P + + SG N AY +I+++
Sbjct: 249 PLSWLKHIT--KYKATISGS-----PNFAY------------------DYCVKRIREEKK 283
Query: 411 -----GRVRFMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG- 458
+GA P+ + ++ F + FG R YG+ E + L++ G
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
+ H V S N E+K++D P+ PC
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIID-PDTL-----IPCDFD 397
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPG-----GRL 538
GEI V+ + KGY+ +T+ + TGD+G GR+
Sbjct: 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRI 457
Query: 539 K--IIDRKKNIF 548
K II KN +
Sbjct: 458 KDLIIIYGKNHY 469
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 87/534 (16%), Positives = 160/534 (29%), Gaps = 134/534 (25%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
H + + + ++ DG +T+ + V
Sbjct: 18 GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAIT---LTWSQLYRRTLNVAQE 74
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP---DAVKYIVNHASV 186
L G S G + + E+++ I+VPL G + +++ +S
Sbjct: 75 LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133
Query: 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246
A+ ++ ++ ++ P +I +D L N
Sbjct: 134 VAILTTSSAVDDVVQHVARRPGESPPSIIE-VDL-------------------LDLDAPN 173
Query: 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVY 300
F + A + YTSG+T TP G V+SH N+ + A P+
Sbjct: 174 GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYA 359
+S+LP H M + G+ G L ++ L RP + L +
Sbjct: 234 VSWLPFYH-------DMGLVIGICAPILGGYPAVLTSPVSFLQRPARW---MHLMASDFH 283
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-----GRVR 414
++A N A+ L + D G +
Sbjct: 284 AFSAA-----------PNFAF------------------ELAARRTTDDDMAGRDLGNIL 314
Query: 415 FMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG---------- 458
+ SG+ + + F F + + Y + E + ++ G
Sbjct: 315 TILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDT 374
Query: 459 DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
++LS P + +++VD + CP GEI V G
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYMLP-RSPIVRIVD-SDTC-----IECPDGTVGEIWVHG 427
Query: 501 PLIFKGYYKDEIQTKEVI-----------DEDGWFHTGDIGMWIPGGRLKIIDR 543
+ GY++ +++ E W TGD G G++ II R
Sbjct: 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 44/261 (16%), Positives = 77/261 (29%), Gaps = 32/261 (12%)
Query: 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
NL P P D + + GTTG PK V + A ++ G
Sbjct: 82 NLVPQGLP-ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG------------YQ 128
Query: 306 LAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
N + + +G VG + + M V R + G T+
Sbjct: 129 HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRS---LSEGDTAT 185
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLV-FNKIKDKLGGRVRFMGSGASPL 423
VR + L P+ L+ ++ ++ + + G + L
Sbjct: 186 VRKYTHHLVDQVQNTLMNQDIRFLVT--TPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243
Query: 424 SPDVLDFL--KICFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVP 480
+ D + F+ +I + YG T + L ++ S + +VD
Sbjct: 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVD-S 302
Query: 481 EMNYTSEDQPCP---RGEICV 498
Q RG + V
Sbjct: 303 I-----TAQTVEYGERGNVIV 318
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
++ + +Q LP T + + S+ P+D A I YTSGTT
Sbjct: 562 AACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPAT--AIDPNDPAYIMYTSGTT 619
Query: 269 GTPKGAVLSHGNLI 282
G PKG + +H N+
Sbjct: 620 GKPKGNITTHANIQ 633
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
R+++ + I ++ V+I + + +NL P K D+A + YTSGTT
Sbjct: 137 ARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV--PSKSTDLAYVIYTSGTT 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
G PKG +L H + D
Sbjct: 195 GNPKGTMLEHKGISNLKVFFENSLNVTEKDR 225
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 56/362 (15%), Positives = 102/362 (28%), Gaps = 119/362 (32%)
Query: 220 DQIPSLPITTGVQIL------TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
+ + + ++L NL +Q S++ P + A + YTSG+TGTPKG
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE--NLDAYLLYTSGSTGTPKG 192
Query: 274 AVLSHGNLIASVA--------GATLGTKFYPSDVYISYLPL---AHIYERANQVMTVYSG 322
+S NL + A + ++ HI E + G
Sbjct: 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE---MFLAWRFG 249
Query: 323 VAVGFYQGDNMKLMDDMAAL----RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
+ G+ + ++DD+ T VP S + +G + E
Sbjct: 250 LCA--VTGERLSMLDDLPRTFRELGVTHAGIVP-----------SLLDQTGLVPEDA--- 293
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
P + +GG ++P
Sbjct: 294 --------------PHL---VYLG------VGG---------EKMTPRTQQIWSSSDRVA 321
Query: 439 VTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
+ YG TE + C ++ + +G P ++ ++ +
Sbjct: 322 LVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVAHVLA------PGSNEHVKKGMA 374
Query: 494 GEICVRGPLIFKGY-----------------YKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
GE+ + G L+ GY Y+ TGDI
Sbjct: 375 GELVIEGSLVANGYLNRPDAKGFCDINGRKMYR----------------TGDIVRMDADS 418
Query: 537 RL 538
+
Sbjct: 419 SI 420
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
G+ + +L + S +P D +A I ++SGTTG PK +H I +
Sbjct: 139 NGLPCVPVRHLPAAPASVARP--CFAADQIAYINFSSGTTGRPKAIACTHAG-ITRLCLG 195
Query: 289 TLGTKFYPSDV 299
F P
Sbjct: 196 QSFLAFAPQMR 206
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
+Q ++ LL ++ K + I YTSG+TG PKG +S NL
Sbjct: 116 QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ 169
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 221 QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
+ LP+ + + + P K D+ I YTSG+TG PKG +++
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 281 LI 282
L+
Sbjct: 169 LV 170
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
++ + V + + + K DD I +TSGTTG PKG +SH NL+
Sbjct: 114 TIEGISLVSLSEIESAKLAE-MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 35/280 (12%), Positives = 79/280 (28%), Gaps = 61/280 (21%)
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
HI + V + + M K +++ LR Y + + I +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRIN--------YKFLMSPIKTEQ 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD--RL-VFNKIKDKL-----GGRVRF-- 415
R + Y ++ + + ++ RL + K++ L V
Sbjct: 103 RQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 416 M-GSGASPLSPDVLDFLKI--CFGGRV---TEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+ GSG + ++ DV K+ ++ + + L L + PN
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQI-DPN 212
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK-----DEIQTKEVIDEDGWF 524
++ S +R L K Y +Q + + F
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKPYENCLLVLLNVQNAKAWNA---F 262
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
++ ++ + R K + +++
Sbjct: 263 ---NLSC-----KILLTTRFKQVTDFLSAATTTHISLDHH 294
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.89 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.78 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.7 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 98.51 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 98.48 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.31 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.15 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 92.72 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 82.32 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 81.84 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 81.05 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 80.9 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-75 Score=640.87 Aligned_cols=469 Identities=25% Similarity=0.364 Sum_probs=398.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|.++++++||++|+.+. ++. +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34579999999999999999999753 221 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .++ ++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988777766554322 232 44444321 12356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~ 311 (617)
++++....... .+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 67776544332 2344567899999999999999999999999999988766543 356889999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 966 567899999999987 799999999999999999999999998765200
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccC-----CCCCCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (617)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0111125899999999999999999999998 89999999999998655432 22345678
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999987788888886 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++. .++++++++++...+++|.
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~ 508 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIK 508 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCS
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCcccc
Confidence 9999997 8999999999999999999999999997643 4788999863 4789999998866666654
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-75 Score=638.47 Aligned_cols=473 Identities=23% Similarity=0.317 Sum_probs=389.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCc--cCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
...|+.++|.++++++||++|+.+. ++. .+..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 3579999999999999999999886 421 23346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ ++.++..+.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988877776665544 5556665431 24
Q ss_pred eHHHHHhcCccCCCCCCCCCC-CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~-~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
++.++...+.... +.....+ +|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5777766544322 2223334 8999999999999999999999999999988887778899999999999999999988
Q ss_pred HHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
..+.++..|+++++.+ +++..+++.++++++|+++++|+++..+.+.......
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------- 291 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------- 291 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence 8778899999999987 8999999999999999999999999998774321100
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHh----hC---CceeccccccccccccccCCCCC-CCCCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGH 464 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~----~~---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (617)
....+++|.+++||+++++++.+.+.+. ++ ++++++||+||++.+++...... ...++
T Consensus 292 --------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 292 --------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp --------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred --------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 0011589999999999999999999887 56 88999999999998776654433 56789
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC--CCC--eeeecceEEEecCCcEEE
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i 540 (617)
+|.|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999988888888887 899999999999999999999999983 677 999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHHcCCCCCh
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAASEGIQSLA 609 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~~~~~~~~~~~~~~~ 609 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|+++ .+++.+|++++...+++
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~ 513 (549)
T 3g7s_A 435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKR 513 (549)
T ss_dssp EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC----
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCccc
Confidence 9999999997 8999999999999999999999999998754 4788999864 46899999988776777
Q ss_pred hhh
Q 007119 610 PSD 612 (617)
Q Consensus 610 ~~~ 612 (617)
|..
T Consensus 514 P~~ 516 (549)
T 3g7s_A 514 VRE 516 (549)
T ss_dssp -CC
T ss_pred ceE
Confidence 764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=642.33 Aligned_cols=472 Identities=22% Similarity=0.323 Sum_probs=344.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|++... ++.. .+.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 34799999999999999999986321 2211 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888877777878888876653211 123456
Q ss_pred HHHHhcCccCC------CCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChH
Q 007119 237 SNLLSQGRSNL------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (617)
Q Consensus 237 ~~l~~~~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~ 307 (617)
.++........ .+.....++|+++|+|||||||.||||++||++++..+...... ..+.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 66654332211 11122346889999999999999999999999999887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998866210
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCc-eeccccccccccccccCCCCCCCCCCc
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (617)
......++||.+++||+++++++.+++++.+++. ++++||+||+++.++.....+...+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998877776666778999
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCC
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~ 545 (617)
|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999987788888776 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCC
Q 007119 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQS 607 (617)
Q Consensus 546 d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~ 607 (617)
|+||+ +|++|+|.|||++|.+||+|.+++|+|.++. +.++|+|++. .+++.+|++++...+
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~ 509 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTA 509 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccc
Confidence 99997 8999999999999999999999999998754 5778888864 357888888776554
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-74 Score=634.69 Aligned_cols=468 Identities=24% Similarity=0.311 Sum_probs=376.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|.++++++||++|+.+. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 58999999999999999999864 22 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.... . ....|++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~ 162 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYEE 162 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHHH
Confidence 99999999999999999999999999999999998887777776666677777776654221 0 1246776
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhh--hcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
+...... .....++|+++|+|||||||.||||++||++++...... ...+.+.++|++++++|++|.+++...+
T Consensus 163 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 163 ALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp HCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHH
T ss_pred HhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHH
Confidence 6543221 134567899999999999999999999999998776653 3446788999999999999999987777
Q ss_pred HHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 007119 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (617)
Q Consensus 317 ~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (617)
.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+.....
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------ 288 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------------ 288 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH------------------------------
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc------------------------------
Confidence 8899999999986 59999999999999999999999999987743211
Q ss_pred chhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-----------CCCC
Q 007119 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (617)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (617)
....++||.+++||+++++++.+++ +.+|++++++||+||++.+++...... ...+
T Consensus 289 ------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 289 ------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp ------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred ------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 0011589999999999999999999 567999999999999987766543321 1347
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCC-CCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEe
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~-~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
++|+|+++++++|+| ++++.++. +. +.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+|
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~~--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDGK--ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSSC--CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCCC--cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence 899999999999999 55666553 21 279999999999999999999999999879999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHH-cCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAAS-EGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~-~~~~~~~~~~ 612 (617)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+++++ +...+++|..
T Consensus 433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~ 510 (541)
T 1v25_A 433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDA 510 (541)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSB
T ss_pred cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcE
Confidence 99999996 9999999999999999999999999998754 5788998863 4678888887 5545666653
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=636.14 Aligned_cols=474 Identities=18% Similarity=0.245 Sum_probs=401.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
..++..+++|+++++++||++|+.+. +.. +..+++||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34566679999999999999999975 332 44578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch--HHHHhhccCCCCc-eEEEEECCCCCCCCCCCccCCce
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~l~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
+||+++|+++||+++.++.+++.+++++++++++|++.+.. +.+.+....++.+ ..++.++... ...
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 198 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEG 198 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------ccc
Confidence 99999999999999999999999999999999999987764 5555555444544 4555555321 112
Q ss_pred EeeHHHHHhcCccCCCCC---CCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 007119 233 ILTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~---~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (617)
+.++.+.+.........+ ....++|+++|+|||||||.||||+++|.+++..+........+.+++++++.+|+.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (580)
T 3etc_A 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWG 278 (580)
T ss_dssp CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTST
T ss_pred cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHH
Confidence 466777765443321111 24678999999999999999999999999998887776666788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
.+.+. .+.++..|+++++++ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 279 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------ 334 (580)
T 3etc_A 279 KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------ 334 (580)
T ss_dssp HHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------------
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------------
Confidence 88776 567899999998873 79999999999999999999999998876510
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCc
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (617)
......++||.+++||+++++++.++|.+.+|++++++||+||++..++.........+++
T Consensus 335 -------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 395 (580)
T 3etc_A 335 -------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI 395 (580)
T ss_dssp -------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCC
T ss_pred -------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcc
Confidence 0011125899999999999999999999999999999999999987766655556778999
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC-----ccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEE
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g-----~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (617)
|+|+++++++|+| ++++.++.|+ .|||+|+| +++++|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus 396 G~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 396 GKPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp BEECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEE
T ss_pred ccCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEE
Confidence 9999999999999 5677787776 89999997 789999999999999999 699999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHcCCCCC
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASEGIQSL 608 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~~~~~~~~~~~~ 608 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++...++
T Consensus 471 ~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~ 549 (580)
T 3etc_A 471 VGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYK 549 (580)
T ss_dssp EEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGG
T ss_pred EecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCcc
Confidence 9999999997 7999999999999999999999999998754 47889998743 478899998876666
Q ss_pred hhhh
Q 007119 609 APSD 612 (617)
Q Consensus 609 ~~~~ 612 (617)
+|..
T Consensus 550 ~P~~ 553 (580)
T 3etc_A 550 YPRI 553 (580)
T ss_dssp CCSE
T ss_pred CCeE
Confidence 6654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-74 Score=632.20 Aligned_cols=471 Identities=23% Similarity=0.301 Sum_probs=396.7
Q ss_pred CCCCHHH-HHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...|+.+ +|.++++++ |++|+.+. ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999752 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||+++.++.+++.+++++++++++|++....+.+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999999887777665545554555666543210 00 1245
Q ss_pred HHHHHhcCccCCCCCCCCC-----C-CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCCh
Q 007119 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~-----~-~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl 306 (617)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++++.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 7777654321101111122 4 899999999999999999999999999988777665 678899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 307 AHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
+|.+++... +.++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 999998874 4556 999999987 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCCCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (617)
. .....++||.+++||+++++++.+++++.| +++++++||+||++..++.........+
T Consensus 303 ------------~--------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 ------------L--------NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp ------------G--------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred ------------c--------ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0 001125899999999999999999999998 6889999999999877666544446778
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEec
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|+|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999977788888776 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhh
Q 007119 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPS 611 (617)
Q Consensus 544 ~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~ 611 (617)
+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+|++++...++.|.
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~ 515 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR 515 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCT
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccccc
Confidence 9999997 9999999999999999999999999998754 4788999864 4789999998766566555
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-74 Score=633.18 Aligned_cols=463 Identities=21% Similarity=0.256 Sum_probs=387.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 469999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.++..+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22233333455566566544311
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
.+.++...... +.+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 01112111111 112334578999999999999999999999999999988877777888999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 75 677899999999987 79999999999999999999999999987642110
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (617)
....++||.+++||+++++++.+++++.+|++++++||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999999999999999999976433321111 1234789999
Q ss_pred CcC-eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCe
Q 007119 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (617)
Q Consensus 469 ~~~-~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ 547 (617)
+++ .+++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 975 5899999 6677777776 8999999999999999999999999988999999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCC-CCChhhh
Q 007119 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGI-QSLAPSD 612 (617)
Q Consensus 548 ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~~~~-~~~~~~~ 612 (617)
||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.++++++++ .+++|..
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~ 505 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDR 505 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSE
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCE
Confidence 995 9999999999999999999999999998754 4788999864 5789999999744 4666653
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-74 Score=626.33 Aligned_cols=465 Identities=19% Similarity=0.245 Sum_probs=388.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.+...|+.++|.++++++||++|+.+. +. .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999864 22 24699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+....++.+.. ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999998887776665543332211111100 01
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23444432222 22344567899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+.++..|+++++.+ +++..+++.++++++|++.++|++++.+.+...
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 277 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE------------------------------- 277 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH-------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------------------------
Confidence 666666999999887 799999999999999999999999998876211
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCCCcC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (617)
......++||.+++||+++++++.+.+... +++++++||+||+++.++..... ....+++|+|.++
T Consensus 278 -----------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 278 -----------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp -----------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred -----------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 111122589999999999999999999987 99999999999998766554332 3567899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecC
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~ 551 (617)
++++|+| +++..++.+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 444444433 69999999999999999999999999 7999999999999999999999999999996
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHcCCCCChhhh
Q 007119 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 552 ~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|+. ++++++++++++...+++|..
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 487 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKK 487 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSE
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCE
Confidence 8999999999999999999999999997654 356677753 457899999998776776653
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-74 Score=624.08 Aligned_cols=460 Identities=26% Similarity=0.342 Sum_probs=385.0
Q ss_pred HHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 007119 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (617)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (617)
++|.+.++++||++++... +.. -+++||+||.++++++|++|.++|+++||+|+|+++|+++|+++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4688999999999999864 211 1469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHHHHhc
Q 007119 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (617)
Q Consensus 163 ~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (617)
+++||+++.++.+++.+++++++++++|++.+..+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544443332221 2333332110 122222222
Q ss_pred CccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHh
Q 007119 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (617)
Q Consensus 243 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~ 321 (617)
. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999888888889999999999999999998765 5678999
Q ss_pred CcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007119 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (617)
Q Consensus 322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l 400 (617)
|+++++.+ +++..+++.++ ++|+++++|+++..+.+...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99999887 79999999998 89999999999998865210
Q ss_pred hHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecC
Q 007119 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (617)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~ 480 (617)
......+++|.+++||+++++++.+.+.+.+++++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987765444445677899999999999999988
Q ss_pred CCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHH
Q 007119 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (617)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~ 560 (617)
+++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 888888887 9999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 561 IENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
||++|.+||+|.+++|+|.++. +.++|+|+++ .+++.++++++...+++|..
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 474 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKK 474 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSE
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCE
Confidence 9999999999999999997654 4688999864 46889999887666666653
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-74 Score=631.20 Aligned_cols=469 Identities=18% Similarity=0.208 Sum_probs=340.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999853 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+....++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 333333334455566666654211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555554433323334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q 007119 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (617)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (617)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 302 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY------------------------ 302 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT------------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc------------------------
Confidence 875 667899999999987 79999999999999999999999999887642110
Q ss_pred cCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-CCCCCcCC
Q 007119 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (617)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (617)
....++||.+++||+++++++.+++++.++++++++||+||++..++.....+ ...+++|+
T Consensus 303 ------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 303 ------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp ------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred ------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 00014899999999999999999999999999999999999876544332221 23468999
Q ss_pred CC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
|+ ++++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 7778888886 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHc-CCCCChhhhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASE-GIQSLAPSDC 613 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~~~~~~~~~-~~~~~~~~~~ 613 (617)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. .++++++++++ ...+++|..+
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~i 515 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQI 515 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcEE
Confidence 9995 9999999999999999999999999997754 5788998864 35677888774 4446666543
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-73 Score=622.92 Aligned_cols=470 Identities=18% Similarity=0.226 Sum_probs=399.0
Q ss_pred CCCCHHHHHHHHHHh-----cCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHh
Q 007119 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e 150 (617)
..+++.++|.+.+++ +||++|+.+. ++. ++.+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 456778999999999 9999999875 422 2346799999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCC
Q 007119 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (617)
Q Consensus 151 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~ 230 (617)
|+++++||+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.... .
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 182 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------D- 182 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------T-
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------c-
Confidence 9999999999999999999999999999999999999999999888877776666777777777654210 0
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHH--HHHhhhcCcccCCCcEEEEeCChHH
Q 007119 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (617)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lPl~h 308 (617)
....++++....... .+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++.+|++|
T Consensus 183 -~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 183 -GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 134677776543321 22234678999999999999999999999999 544 34433 5678899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|+++++|++++.+.+.-
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------- 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------------- 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-----------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-----------------------
Confidence 999875 677899999999985 69999999999999999999999999886520
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (617)
......++||.+++||+++++++.+.+++.+|++++++||+||++..++.........++
T Consensus 316 --------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 316 --------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp --------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred --------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 000012589999999999999999999998999999999999998766655444567789
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEe-----CccccccccCChhhhhcccCCCCeeeecceEEEecCCcEE
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~-----g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (617)
+|+|+++++++|+| ++++.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6678888776 8999999 9999999999999999999 68999999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----------HHHHHHHHHcCC
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----------DALKAWAASEGI 605 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~~~~~~~~~~~ 605 (617)
|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++++ +++.++++++..
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~ 529 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTA 529 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSC
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCc
Confidence 99999999996 8999999999999999999999999998654 47889998743 467888888766
Q ss_pred CCChhhh
Q 007119 606 QSLAPSD 612 (617)
Q Consensus 606 ~~~~~~~ 612 (617)
.+++|..
T Consensus 530 ~~~~P~~ 536 (570)
T 3c5e_A 530 PYKYPRK 536 (570)
T ss_dssp GGGSCSE
T ss_pred cccCCcE
Confidence 5666543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-73 Score=632.42 Aligned_cols=484 Identities=17% Similarity=0.253 Sum_probs=397.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
...++++++|.++++++||++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578899999999999999999875 332344578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch---------HHHHhhccCC--CCceEEEEECCCCCCCCC
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV--PTVRLIVVIGGIDDQIPS 224 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~--~~~~~iv~~~~~~~~~~~ 224 (617)
|||+++|++++|+++.++++++.+++++++++++|++.... +.+.+..... +.++.++.++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999987542 2333333333 24567777754321110
Q ss_pred CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHH-hhhcCcccCCCcEEEEe
Q 007119 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (617)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (617)
. .......|++++..... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 W---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp C---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred c---cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 0 01123578888764332 1223345689999999999999999999999999887654 33445788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHH
Q 007119 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (617)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (617)
+|++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+....
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------- 370 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-------------- 370 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG--------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc--------------
Confidence 99999999854 678999999999987 3889999999999999999999999988652100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---Cceecccccccccccccc
Q 007119 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (617)
..+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 371 --------------------------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 371 --------------------------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp --------------------------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred --------------------------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 000111258999999999999999999999888 899999999999876665
Q ss_pred CCCC--CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhcccC--CCCeeeecc
Q 007119 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (617)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD 528 (617)
..+. ....+++|+|++|++++|+| ++++.++.|+ .|||+|+| |++++|||++|+.+.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 4432 35678999999999999999 5667776665 89999999 7999999999999988762 489999999
Q ss_pred eEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHH
Q 007119 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DAL 596 (617)
Q Consensus 529 lg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~ 596 (617)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++++ +++
T Consensus 501 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l 579 (652)
T 1pg4_A 501 GARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEV 579 (652)
T ss_dssp EEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999997 8999999999999999999999999997643 47999999743 578
Q ss_pred HHHHHHcCCCCChhhh
Q 007119 597 KAWAASEGIQSLAPSD 612 (617)
Q Consensus 597 ~~~~~~~~~~~~~~~~ 612 (617)
+++++++..+++.|+.
T Consensus 580 ~~~l~~~l~~~~~P~~ 595 (652)
T 1pg4_A 580 RNWVRKEIGPLATPDV 595 (652)
T ss_dssp HHHHHHHTCGGGCCSE
T ss_pred HHHHHHhCCCCcCCeE
Confidence 8899887665665543
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-73 Score=615.06 Aligned_cols=455 Identities=20% Similarity=0.251 Sum_probs=375.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
++|+.++|.++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+|+++|+++|+++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999753 211 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEe--cccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
|+++|+++||+++.++.+++.+++++++++++|+ +....+.+.... +.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eE---------------------E
Confidence 9999999999999999999999999999999999 665544441211 2222 22 2
Q ss_pred HHHHHhcCc----cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCccc--CCCcEEEEeCChHHH
Q 007119 236 YSNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (617)
Q Consensus 236 ~~~l~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lPl~h~ 309 (617)
++++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234568999999999999999999999999999988877766777 889999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
+++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|++++.+.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 99854 677899999999987 799999999999999999999999999876310000
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (617)
.....++||.+++||+++++++.+++++.+++.++++||+||++. +.... ....+++|.
T Consensus 267 ------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMA 325 (504)
T ss_dssp ------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--SCSSSSEEB
T ss_pred ------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--CCCCCcccc
Confidence 000115899999999999999999999999999999999999943 22221 345688999
Q ss_pred CCcCeEEEEeecCCC--CCCCCCCCCCcceEEEe-CccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC
Q 007119 468 PNAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 468 p~~~~~v~ivd~~~~--~~~~~~~~~~~GEl~v~-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|.++++++|+|.++. +.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999994432 5666665 8999999 9999999999999999999 7999999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHH-cCCCCChhhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAAS-EGIQSLAPSD 612 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~-~~~~~~~~~~ 612 (617)
||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+|+++ +...+++|..
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~ 478 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSE
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceE
Confidence 999996 9999999999999999999999999998764 4799999964 4789999998 5555666653
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-72 Score=626.58 Aligned_cols=487 Identities=18% Similarity=0.213 Sum_probs=399.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLI 153 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~~~ 153 (617)
....++++++|.++++++||++|+++. +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++||++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 345688999999999999999999975 333344578999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch---------HHHHhhccCCCCceEEEEECCCCCCCCC
Q 007119 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPS 224 (617)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 224 (617)
++|||+++|++++|+++.++.+++.++|++++++++|++.... +.+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987642 2344555556667778877643210000
Q ss_pred CCccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEe
Q 007119 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (617)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (617)
. .......|.++...... ..+..+..++|+++|+|||||||.||||++||++++..... ....+++.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01124578887754322 12334557899999999999999999999999998866543 3445788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHH
Q 007119 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (617)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (617)
+|++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+...
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc---------------
Confidence 99999999854 678999999999987 378999999999999999999999988754100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---Cceecccccccccccccc
Q 007119 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (617)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (617)
.. .+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 376 --------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 376 --------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp --------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred --------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 00111258999999999999999999999888 899999999999876655
Q ss_pred CCC---CCCCCCCcCCCCcCeEEEEeecCCCCCCCC-CCCCCcceEEEeC--ccccccccCChhhhhcccC--CCCeeee
Q 007119 455 LDE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (617)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~-~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~T 526 (617)
..+ .....+++|.|++|++++|+|.++++.++. ++ .|||+|+| |+++.|||++|+.|.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546776665 54 89999999 5899999999999988874 3899999
Q ss_pred cceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------
Q 007119 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------- 593 (617)
Q Consensus 527 GDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------- 593 (617)
||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++ +.++|+|++++
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~ 586 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD 586 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccch
Confidence 999999999999999999999997 8999999999999999999999999998753 57999998642
Q ss_pred ------HHHHHHHHHcCCCCChhhh
Q 007119 594 ------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 594 ------~~~~~~~~~~~~~~~~~~~ 612 (617)
+++.++++++..+++.|+.
T Consensus 587 ~~~~l~~~l~~~l~~~L~~~~~P~~ 611 (663)
T 1ry2_A 587 ELQDIKKHLVFTVRKDIGPFAAPKL 611 (663)
T ss_dssp -CCSHHHHHHHHHHHHTCTTTSCSE
T ss_pred hHHHHHHHHHHHHHHhCCCCcCCeE
Confidence 4577788877665666653
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-73 Score=625.64 Aligned_cols=449 Identities=18% Similarity=0.220 Sum_probs=319.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...++.++|+++++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999863 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||+++.++.+++.+++++++++++|++...... +.....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc----------------
Confidence 9999999999999999999999999999999999998764332 22222222211100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
.............++|+++|+|||||||.||||++||+++.+.+.. .....+.++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001112233467899999999999999999999999999877654 445678899999999999998777777
Q ss_pred HHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
+.+++.|+++++.+ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999976 6899999999999999999999999988763110
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC----CCCCCCcCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (617)
..++||.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... .....++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 014899999999999999999888877 78999999999998766543221 234567999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC--------CeeeecceEEEecCCcEE
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~--------gw~~TGDlg~~~~dG~l~ 539 (617)
|+++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|++.|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6677788776 99999999999999999999999998543 799999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-------HHHHHHHHHHcCCCCCh
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-------QDALKAWAASEGIQSLA 609 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~~~~~~~~~~~~~~~ 609 (617)
|+||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++. .++++++++++...+++
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~ 542 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMV 542 (570)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccC
Confidence 99999999997 9999999999999999999999999997643 5788988863 35788899887666777
Q ss_pred hhhh
Q 007119 610 PSDC 613 (617)
Q Consensus 610 ~~~~ 613 (617)
|..+
T Consensus 543 P~~i 546 (570)
T 4gr5_A 543 PVEC 546 (570)
T ss_dssp ----
T ss_pred CcEE
Confidence 7543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=617.06 Aligned_cols=448 Identities=19% Similarity=0.258 Sum_probs=374.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|.+.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||+++.++.+++.+++++++++++|++......+.... ....++.++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443221 111233222110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
+ ... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...
T Consensus 167 ---~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 000 00112234568899999999999999999999999999888877777889999999999999999998878
Q ss_pred HHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 5899999999999999999999988755320
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC---CCCCCcCCC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (617)
...++|.+++||+++++++.+.+++. ++++++||+||++..++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 01489999999999999999999774 78999999999987665433222 355789999
Q ss_pred CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCC------CCeeeecceEEEecCCcEEEEe
Q 007119 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~g 542 (617)
+++++++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6677777776 8999999999999999999999999843 4699999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+||+||+ +|++|+|.|||++|.+||+|.+++|++.++. +.++|+|++ +.+++++|++++...+++|..
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~ 503 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSY 503 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSE
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcE
Confidence 99999997 9999999999999999999999999998754 478899986 457899999988766666653
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-72 Score=614.50 Aligned_cols=459 Identities=21% Similarity=0.275 Sum_probs=331.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+. + +++||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999863 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|+++|||++.++.+++.+++++++++++|++.+....+......++.++.++.++.... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999888776666666777777777654211 11
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (617)
.++.........+.....++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++.+|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111222334456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHHHhCcEE-EEecCChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007119 317 MTVYSGVAV-GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (617)
Q Consensus 317 ~~l~~G~~~-~~~~~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (617)
.++..|++. ++..+++..+++.++++++|++.++|+++..+++...
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------- 267 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------- 267 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------------
Confidence 655555444 4444899999999999999999999999999876310
Q ss_pred hhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCCCCCCCcCCCCcCeEE
Q 007119 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474 (617)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v 474 (617)
....+++|.++.||++ ++.+.+.+.+ ++++++.||+||++++++..... ....++|+|++++++
T Consensus 268 -----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 268 -----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTV 332 (509)
T ss_dssp -----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEE
T ss_pred -----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEE
Confidence 0011489999999988 8888888888 89999999999999876654332 234569999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC--CCeeecCC
Q 007119 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK--KNIFKLAQ 552 (617)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~--~d~ikl~~ 552 (617)
+|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5677777776 89999999999999999999999999 5999999999999999999999999 999996 9
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
|++|+|.+||++|.+||+|.+++|+|.++. +.++|+|++. .++++++++++...+++|..
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 475 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKH 475 (509)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcE
Confidence 999999999999999999999999998754 4688888864 35788888887666776654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-72 Score=610.87 Aligned_cols=469 Identities=20% Similarity=0.263 Sum_probs=381.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
.++++.++|+++++ +||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 45569999999999 9999999743 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCc-eEEEEECCCCCCCCCCCccCCceEee
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.+ ..++.++.... .......
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988777666554444444 45555543211 0011235
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHH-HHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
++++...... ..+.....++|+++|+|||||||.||||++||+++ ..........+++.++|++++.+|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6776653322 12233467899999999999999999999999999 666665555678899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCC
Q 007119 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (617)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (617)
.+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+....
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------ 292 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------------ 292 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------------
Confidence 456899999999873 79999999999999999999999998876410
Q ss_pred CCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcC
Q 007119 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (617)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (617)
.... ....++|.+++||+++++++.+++++.+|++++++||+||++.+++.....+...+++|+|+++
T Consensus 293 ~~~~------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 293 NLPA------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp TCCC------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred cccc------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 0000 0003799999999999999999999999999999999999976665555555677899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecC
Q 007119 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (617)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~ 551 (617)
++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6678888776 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH---------HHHHHHHHHcCCCCChhhh
Q 007119 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ---------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 552 ~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~---------~~~~~~~~~~~~~~~~~~~ 612 (617)
+|++|+|.|||++|.+||+|.+++|++... .+.++|+|++.+ ++++++++++...+++|..
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 506 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRD 506 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSE
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeE
Confidence 899999999999999999999999999732 247889998632 4588899877666666653
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-72 Score=609.00 Aligned_cols=451 Identities=19% Similarity=0.231 Sum_probs=375.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|++||+++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999864 3 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHHH
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (617)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ . .++. ...+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~-~~~~------------------~~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-V-RIVS------------------EDNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-S-EEEE------------------THHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-c-ceec------------------hhhhhh
Confidence 9999999999999999999999999999999997543110 000 0 0110 011222
Q ss_pred HHhcCc-cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 239 LLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 239 l~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
+..... ..+.+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 222111 1122234567899999999999999999999999999999888887889999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+....
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 253 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------------------------------- 253 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------------
Confidence 999999999987 58999999999999999999999998775410
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCCC-----CCCCCcCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (617)
.......+++|.+++||+++++++.+.+.+.| +++++++||+||+++.++...... ....++|.
T Consensus 254 ----------~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 254 ----------SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp ----------TCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred ----------cccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 00111225899999999999999999999998 889999999999987665433221 35678999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc---CCCCeeeecceEEEecCCcEEEEecC
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|.++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++ +||+|+|+||+
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~ 398 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEG
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEeccc
Confidence 99999999999 6777777776 89999999999999999999999998 45779999999999 79999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHcCCCCChhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~~~~~~~~~~~~~~~~~ 611 (617)
||+||+ +|++|+|.+||++|.+||+|.+++|++.+++ +.++|+|++++ ++++++++++...+++|.
T Consensus 399 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 477 (512)
T 3fce_A 399 DFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPR 477 (512)
T ss_dssp GGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCS
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCe
Confidence 999997 9999999999999999999999999987644 46899999853 368888888765566664
Q ss_pred h
Q 007119 612 D 612 (617)
Q Consensus 612 ~ 612 (617)
.
T Consensus 478 ~ 478 (512)
T 3fce_A 478 K 478 (512)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-71 Score=603.52 Aligned_cols=450 Identities=18% Similarity=0.209 Sum_probs=382.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
.|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+. |.++|++|+|+++|+++|+++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999753 2 4699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++|+++.++.+++.+++++++++++|++...... .. ........++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999997543110 00 0112345677
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
++...............++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 77654433323334467899999999999999999999999999999988877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 252 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------------- 252 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------------
Confidence 999999999986 58999999999999999999999998876420
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-----CCCCCCcCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVGS 467 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (617)
.......+++|.+++||+++++++.+.+.+.| +++++++||+||+++.++..... .....++|.
T Consensus 253 ----------~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 253 ----------GFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp ----------TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred ----------ccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 00011225899999999999999999999998 89999999999998766543221 235568999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC-CCC--eeeecceEEEecCCcEEEEecC
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDRK 544 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~-~~g--w~~TGDlg~~~~dG~l~i~gR~ 544 (617)
|+++++++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++ +||+|+|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5677888776 899999999999999999999999983 233 7999999999 59999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHcCCCCChhh
Q 007119 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 545 ~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~~~~~~~~~~~~~~~~~ 611 (617)
||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++++ ++++++++++...+++|.
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 476 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPR 476 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCS
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCe
Confidence 999997 9999999999999999999999999997643 57999999753 468888988766666664
Q ss_pred h
Q 007119 612 D 612 (617)
Q Consensus 612 ~ 612 (617)
.
T Consensus 477 ~ 477 (511)
T 3e7w_A 477 K 477 (511)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-71 Score=617.50 Aligned_cols=447 Identities=17% Similarity=0.137 Sum_probs=371.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
....|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34679999999999999999999864 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++|||++.++.+++.++++++++++++++....... ..... ..
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~----------------------~~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPC----------------------VP 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCE----------------------EE
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCce----------------------ee
Confidence 99999999999999999999999999999999999765432110 01110 11
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (617)
+.... ............++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++++++|++|.+++...
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 11100 001111223456899999999999999999999999999887765 445778999999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+..
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~------------------------------- 271 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD------------------------------- 271 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-------------------------------
Confidence 89999999999864 68999999999999999999999999886520
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC----CCCCCCcCC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (617)
....++||.+++||++++++..+.+...+ +++++|+||+||++..++..... .....++|+
T Consensus 272 --------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 272 --------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp --------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred --------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 00114899999999999988888777665 78999999999998766543221 245678999
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCC-------CeeeecceEEEecCCcEEE
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i 540 (617)
|+++++++|+|.+....++.|. .|||||+|+++++|||++|+.|++.|..+ +||+|||+|++++||+|+|
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccCcEEEEECccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 9999999999944333356665 89999999999999999999999999543 7999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeCHHHHHHHHHHcCCCCChhhh
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~~~~~~~~~~~~~~~~~~ 612 (617)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++.+.+.+.++++++...+++|..
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~Lp~y~~P~~ 487 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHA 487 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHSCGGGSCSE
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhChhhcCCcE
Confidence 9999999998 8999999999999999999999999987654 467777777777777888877666666653
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-70 Score=611.34 Aligned_cols=466 Identities=20% Similarity=0.248 Sum_probs=391.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++ ||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999853 2 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccch-----HHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987654 223333334455666665544211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (617)
..+.+....... .....+..++|+++|+|||||||.||||+++|+++++.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 234444443322 12334567899999999999999999999999999999988888888999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q 007119 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (617)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (617)
+.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 677899999999987 7899999999999999999999999988764321100
Q ss_pred cCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-CCCCCcCC
Q 007119 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (617)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (617)
....++||.+++||+++++++.+++.+.+++++++.||+||++..++...... ....++|.
T Consensus 298 ------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 00114899999999999999999999999999999999999986554332211 23457899
Q ss_pred CC-cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
|+ ++++++|+| ++++.++.|. .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++++||+|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCC-CCChhhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGI-QSLAPSD 612 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~-~~~~~~~ 612 (617)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++ +.++++++++++.+ .+++|..
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~ 508 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDR 508 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSE
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcE
Confidence 9997 8999999999999999999999999987643 578899886 45789999998544 4666653
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-71 Score=605.56 Aligned_cols=450 Identities=19% Similarity=0.218 Sum_probs=370.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
+.|+.++|++.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999753 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ .+.....+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------------------------~~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------------------------EGISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------------------------TTSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------------------------ccCcccchh
Confidence 999999999999999999999999999999999986542111 112234444
Q ss_pred HHHhcCc--cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHHHH
Q 007119 238 NLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 238 ~l~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
++..... ..........++|+++|+|||||||.||||++||+++++.+.+.... +.+..++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 4432211 11122345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------------- 256 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD---------------------------- 256 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTST----------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh----------------------------
Confidence 8888999999999876 38999999999999999999999998765410
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccCCCC-----CCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (617)
.......+++|.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... ....+
T Consensus 257 --------------~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 257 --------------DFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp --------------TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred --------------ccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 00001125899999999999999999999988 89999999999998766543221 13567
Q ss_pred CcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc---CCCCeeeecceEEEecCCcEEE
Q 007119 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (617)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (617)
++|+|+++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6677777776 89999999999999999999999998 5678999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEeCH-------------HHHHHHHHHc
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSVDQ-------------DALKAWAASE 603 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~-------------~~~~~~~~~~ 603 (617)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++. +.++|+|++++ ++++++++++
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999997 8999999999999999999999999986532 46889999753 4678888877
Q ss_pred CCCCChhhh
Q 007119 604 GIQSLAPSD 612 (617)
Q Consensus 604 ~~~~~~~~~ 612 (617)
...+++|..
T Consensus 478 l~~~~~P~~ 486 (521)
T 3l8c_A 478 MMSYMMPSK 486 (521)
T ss_dssp SCGGGSCSE
T ss_pred CccccCCeE
Confidence 655666643
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-71 Score=648.00 Aligned_cols=476 Identities=25% Similarity=0.349 Sum_probs=343.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
+...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 58 p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~ 130 (979)
T 3tsy_A 58 PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130 (979)
T ss_dssp CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHH
Confidence 46689999999999999999999853 211 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++||++|.++++++.+++++++++++|++....+.+....... .+ .++.++..... ........
T Consensus 131 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~~ 202 (979)
T 3tsy_A 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV------PIPEGCLR 202 (979)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS------CCCTTEEE
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc------cCCccccc
Confidence 999999999999999999999999999999999999988766655544332 22 34444432110 00112355
Q ss_pred HHHHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHH
Q 007119 236 YSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHI 309 (617)
Q Consensus 236 ~~~l~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~ 309 (617)
|.++...... ...+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 203 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred HHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence 6665443322 112334567899999999999999999999999999988766543 3568899999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 310 YERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 337 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE------------------------- 337 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG-------------------------
T ss_pred HHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc-------------------------
Confidence 99966 567899999999987 799999999999999999999999988866210
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhh-CCceeccccccccccccccC-----CCCCCC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNL 461 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~-----~~~~~~ 461 (617)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+....
T Consensus 338 -----------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~ 400 (979)
T 3tsy_A 338 -----------------TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVK 400 (979)
T ss_dssp -----------------GGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCC
T ss_pred -----------------ccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccC
Confidence 0011125899999999999999999999998 89999999999998765433 223356
Q ss_pred CCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEE
Q 007119 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (617)
Q Consensus 462 ~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (617)
.+++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+
T Consensus 401 ~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~ 477 (979)
T 3tsy_A 401 SGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIV 477 (979)
T ss_dssp TTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEe
Confidence 7899999999999999987788888887 8999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCCChhhh
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~~~~~~ 612 (617)
||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. ++++++|++++...++.|..
T Consensus 478 GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 556 (979)
T 3tsy_A 478 DRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINK 556 (979)
T ss_dssp EESCC---------------------------------------------------------------------------
T ss_pred cCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeE
Confidence 999999997 8999999999999999999999999997653 5789999863 46788999887666666643
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-70 Score=596.20 Aligned_cols=459 Identities=20% Similarity=0.235 Sum_probs=368.4
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007119 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (617)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (617)
|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+. +||+|+|+++|+++|+++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999753 2 3599999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe-eHHH
Q 007119 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYSN 238 (617)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (617)
++|++++|+++.++.+++.+++++++++++|++............ ...+..+........... ........ ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLLD---NTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeecccccccc---cccccccccchhh
Confidence 999999999999999999999999999999999765443322111 111111111100000000 00000000 0111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 007119 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (617)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (617)
+...............++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11111100112234578999999999999999999999999999998888878899999999999999999999888889
Q ss_pred HHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007119 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (617)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (617)
++.|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------- 270 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL----------------------------------- 270 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC-----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC-----------------------------------
Confidence 99999999987 799999999999999999999999998876310
Q ss_pred hHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC--CCCCCCcCCCCcCeEEE
Q 007119 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (617)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~ 475 (617)
....+||.+++||+++++++.+.+.+ +++++++.||+||+++.++...+. ....+++|.|+++++++
T Consensus 271 ----------~~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 271 ----------HEPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp ----------CSCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred ----------CCcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 00027999999999999999999987 599999999999998755543332 24668899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeee
Q 007119 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (617)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~ 555 (617)
|+|.+ .+ +.|||+|+|+++++|||++|+.|.+ | .+|||+|||+|++|+||+|+|+||+||+||+ +|++
T Consensus 340 i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~ 407 (501)
T 3ipl_A 340 IKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN 407 (501)
T ss_dssp EESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred EecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence 99943 23 3799999999999999999999988 6 7899999999999999999999999999995 9999
Q ss_pred echHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 556 IAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 556 i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+|.|||+++.+||+|.+++|+|.+++ +.++|+|++ +++++.++++++...+++|..
T Consensus 408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~~~~P~~ 471 (501)
T 3ipl_A 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKH 471 (501)
T ss_dssp ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSE
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhhCccccCCCE
Confidence 999999999999999999999998754 467888886 468999999998766776653
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-71 Score=598.80 Aligned_cols=449 Identities=24% Similarity=0.289 Sum_probs=367.6
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
++.|+.+.|.++++++|+ ++|+.+. + +.+||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 567888889999999987 9999863 2 46999999999999999885 3889999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEee
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~ 235 (617)
+||+++|+++|||++.++.+++.+++++++++++|++.+... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865210 00111222211 1110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 007119 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (617)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (617)
.....+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233457899999999999999999999999999999988888888999999999999999999876
Q ss_pred HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
.+.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 266 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------- 266 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------------
Confidence 677899999999887 7899999999 88999999999999998764211000
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeE
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (617)
.....+++|.+++||+++++++.+++.+.+++++++.||+||++..++.........+++|+|+++++
T Consensus 267 ------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 267 ------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp ------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred ------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 00001378999999999999999999999999999999999999877766555667789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecC-CCeeecCC
Q 007119 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQ 552 (617)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~-~d~ikl~~ 552 (617)
++|+| +++..++...+++.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555554111238999999999999999999999999988999999999999999999999998 599996 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHcCCCCChhhh
Q 007119 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 553 G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~~~~~~~~~~~~~~~~~~ 612 (617)
|++|+|.|||++|.+||+|.+++|+|.+++ +.++|+|++.+ ++++++++++...+++|..
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 482 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRV 482 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSE
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccE
Confidence 999999999999999999999999997754 57999999753 6899999998776777764
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-69 Score=594.94 Aligned_cols=456 Identities=19% Similarity=0.223 Sum_probs=371.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 5679999999999999999999876 42 234679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCC---HHHHHHHHHhccccEEEecccchHHHHhhc-cCCCCceEEEEECCCCCCCCCCCccCCce
Q 007119 157 ACSAYSFISVPLYDTLG---PDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~---~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 232 (617)
||+++|+++||+++.++ .+++.++++++++++++++.+....+.... ...+....+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 99999999999999884 578999999999999999987665544322 111211111 1
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (617)
+..++++.... ..........++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++++|++|.+++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 11222211111 11123345678999999999999999999999999999999888888899999999999999999999
Q ss_pred HH-HHHHHHhCcEEEEec-C----ChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 313 AN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~----~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
.. .+.+++.|+++++.+ + ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 282 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------------- 282 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------------
Confidence 87 678899999999987 2 89999999999999999999999988876321100
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC------CceeccccccccccccccCCCC--
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG-- 458 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~~~~~-- 458 (617)
......++||.+++||+++++++.+.+.+.|+ ++++++||+||++++++...+.
T Consensus 283 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 283 ------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp ------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred ------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 01111258999999999999999999999873 3799999999999876643221
Q ss_pred -------------------------CCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhh
Q 007119 459 -------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (617)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~ 513 (617)
....+++|.|+++ ++|+|.+++..++.|+ .|||+|+||++++|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234678999998 8899976677787776 899999999999999999999
Q ss_pred hhcccCC------CC--eeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH-hcCCCcc--eEEEEeeCCC
Q 007119 514 TKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVG--QCFVYGDSFN 582 (617)
Q Consensus 514 t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l-~~~p~V~--~~~V~g~~~~ 582 (617)
|++.|.. +| ||+|||+|++| ||+|+|+||+||+||+ +|++|+|.|||++| ..+|.|. +|+|++.+++
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 9999953 24 99999999999 9999999999999997 89999999999999 8899998 7888886543
Q ss_pred --CeEEEEEEeC--------HHHHHHHHHHc
Q 007119 583 --SALVAIVSVD--------QDALKAWAASE 603 (617)
Q Consensus 583 --~~~va~vv~~--------~~~~~~~~~~~ 603 (617)
+.++++|++. .+++.++++++
T Consensus 498 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~ 528 (590)
T 3kxw_A 498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFEL 528 (590)
T ss_dssp TEEEEEEEEEESCTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEeccccccchhHHHHHHHHHHH
Confidence 5777888753 24566676654
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-68 Score=589.94 Aligned_cols=461 Identities=16% Similarity=0.145 Sum_probs=317.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecC----ccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH
Q 007119 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDG----TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW 151 (617)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 151 (617)
....|+.++|+++++++||++|+.+. ++ .....+.+||+||.++++++|++|.+.|+ +||+|+|+++|+++|
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 35578999999999999999999875 32 12234679999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCc
Q 007119 152 LIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 152 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
+++++||+++|+++|||++.++.+++.+++++++++++|++......+ ..+....++..+.
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~-------------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN-------------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC--------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc--------------
Confidence 999999999999999999999999999999999999999986654321 1111112221110
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc--------CcccCCCcEEEEe
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISY 303 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~ 303 (617)
..+.+....... ........++++++|+|||||||.||||++||+++.+.+..+.. ...+...+++++.
T Consensus 154 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 154 --QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp --HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred --hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 123333222211 12223456789999999999999999999999999887765433 2457788999999
Q ss_pred CChHHHHHHHHHHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 007119 304 LPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (617)
Q Consensus 304 lPl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (617)
.|++|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--------------------- 289 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--------------------- 289 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC---------------------
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC---------------------
Confidence 99999998887888999999999866 3457788999999999999999987654210
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCC-CCC
Q 007119 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDN 460 (617)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (617)
....++||.+++||+++++++.+++++.++++++++||+||++..++.... .+.
T Consensus 290 -------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 344 (562)
T 3ite_A 290 -------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDS 344 (562)
T ss_dssp -------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTS
T ss_pred -------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCC
Confidence 001258999999999999999999999889999999999999876655432 335
Q ss_pred CCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCC--eeeecceEEEecCCcE
Q 007119 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRL 538 (617)
Q Consensus 461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l 538 (617)
..+++|+|+++++++|+|.+++..++.|+ .|||+|+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|
T Consensus 345 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l 420 (562)
T 3ite_A 345 DTRCIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSI 420 (562)
T ss_dssp CTTEEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCE
T ss_pred CCccccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeE
Confidence 66789999999999999977777777776 89999999999999999999998876 455 9999999999999999
Q ss_pred EEEecCCCeeecCCeeeechHHHHHHHhcC-CCcceEEEEeeCCC---C-eEEEEEEeCH------------------HH
Q 007119 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKC-KFVGQCFVYGDSFN---S-ALVAIVSVDQ------------------DA 595 (617)
Q Consensus 539 ~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~-p~V~~~~V~g~~~~---~-~~va~vv~~~------------------~~ 595 (617)
+|+||+||+||+ +|++|+|.|||++|.+| |.|.+++|++.++. + .++++|+... ++
T Consensus 421 ~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 499 (562)
T 3ite_A 421 LFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNS 499 (562)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHH
Confidence 999999999996 99999999999999998 88889998886643 2 3445554321 37
Q ss_pred HHHHHHHcCCCCChhhhh
Q 007119 596 LKAWAASEGIQSLAPSDC 613 (617)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~ 613 (617)
+++||+++...+++|..+
T Consensus 500 l~~~~~~~L~~y~~P~~i 517 (562)
T 3ite_A 500 LRQACEQTLPAYMVPDFI 517 (562)
T ss_dssp ------------------
T ss_pred HHHHHHhhCCcccCCcEE
Confidence 888998887667777643
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-67 Score=625.78 Aligned_cols=450 Identities=21% Similarity=0.270 Sum_probs=380.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..++.++|++.++++||++|+.+. + +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999753 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|+++|||+|.++.+++.++++++++++++++......+. .++.....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876543321 122222233322210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 007119 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (617)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (617)
.. .. ....+.....++|+++|+|||||||.||||+++|+++.+. ......+.+.++|+++.+.|++|..+....+.
T Consensus 592 ~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 00 1112233467899999999999999999999999999876 44555678899999999999999998888889
Q ss_pred HHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCC
Q 007119 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (617)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (617)
+++.|+++++.+ .++..+.+.|+++++|++.++|++++.+.+....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------ 717 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------------ 717 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------------
Confidence 999999999986 5899999999999999999999999988652000
Q ss_pred CchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC-CceeccccccccccccccCCCC----CCCCCCcCCC
Q 007119 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG----DNLSGHVGSP 468 (617)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p 468 (617)
.+ ++||.+++||+++++++.+.+.+.++ ++++|+||+||++..++..... .....++|+|
T Consensus 718 -------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 718 -------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp -------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred -------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 00 37999999999999999999988774 6899999999998766543222 2345689999
Q ss_pred CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccC------CCCeeeecceEEEecCCcEEEEe
Q 007119 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (617)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~g 542 (617)
+++++++|+| ++++.++.|. .|||||+|+++++||+|+|+.|++.|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6677888886 899999999999999999999999983 24599999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEe----CHHHHHHHHHHcCCCCChhhh
Q 007119 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSV----DQDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 543 R~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~----~~~~~~~~~~~~~~~~~~~~~ 612 (617)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ...++|+|++ +.++++++++++...+++|..
T Consensus 859 R~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~Lp~ymvP~~ 934 (1304)
T 2vsq_A 859 RIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQT 934 (1304)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHHSCGGGSCSE
T ss_pred CCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHhChHhhhccE
Confidence 99999998 899999999999999999999999999764 3589999996 458899999998776777654
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-63 Score=533.28 Aligned_cols=400 Identities=18% Similarity=0.218 Sum_probs=318.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...|+.++|.++++++||++|+.+....++..++.+++||+||.++++++|++|++.|+ +||+|+|+++|+++|+++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999861111233456789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCc--eEEEEECCCCCCCCCCCccCCc
Q 007119 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (617)
Q Consensus 157 A~~~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~iv~~~~~~~~~~~~~~~~~~ 231 (617)
||+++|+++|||++ .++.+++.+++++++++++|++....+.+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998887777655443321 1233322211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCC------CcEEEEeCC
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~lP 305 (617)
.. ...........++|+++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 00 01112234467899999999999999999999999999998887766666666 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 007119 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (617)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (617)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++| +..+|+++..+.......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999876 577899999999986 3999999999999999 889999988876531100
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC------Cceeccccccccccccc
Q 007119 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (617)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~ 453 (617)
........++||.+++||+++++++.+++.+.|+ +.++++||+||++..++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0011112368999999999999999999999874 37999999999998776
Q ss_pred cCCCCC-------------------------CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCcccccccc
Q 007119 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (617)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~ 508 (617)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||+|+|+++++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654332 23358999999 999999976677788886 8999999999999999
Q ss_pred CChhhhhcccC-----------CCCeeeecceEEEecCCcEEEEec
Q 007119 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (617)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~gR 543 (617)
++|++|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=398.97 Aligned_cols=281 Identities=17% Similarity=0.143 Sum_probs=237.4
Q ss_pred CCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChhh
Q 007119 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (617)
Q Consensus 255 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~~~~~~~~~~~ 334 (617)
.||+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|++++...+.++..|+++++... ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~-~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP-TAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC-CSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc-ccc
Confidence 4789999999999999999999999999999888888999999999999999999999888889999999998762 223
Q ss_pred HHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceE
Q 007119 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (617)
Q Consensus 335 l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr 414 (617)
.++.++++++|++.++|+++..+++.... ....++||
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-------------------------------------------~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-------------------------------------------SGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-------------------------------------------GGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-------------------------------------------cccCCcce
Confidence 45678899999999999999988762100 00114899
Q ss_pred EEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcc
Q 007119 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (617)
Q Consensus 415 ~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~G 494 (617)
.+++||+++++++.+++++ ++++++++||+||+++.++.........+++|.+.|++++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 58999999999999988777766667788999999999988754 79
Q ss_pred eEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH---hcCCCc
Q 007119 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY---AKCKFV 571 (617)
Q Consensus 495 El~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l---~~~p~V 571 (617)
||+++|+.+ .+|||+|||+|++|+|| ++|+||+||+||+ +|++|+|.|||++| .+||.|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998632 68999999999999988 6778999999996 89999999999887 468999
Q ss_pred ceEEEE-eeCCC---CeEEEEEEeC-----HHHHHHHHHHcCCCCChhhh
Q 007119 572 GQCFVY-GDSFN---SALVAIVSVD-----QDALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 572 ~~~~V~-g~~~~---~~~va~vv~~-----~~~~~~~~~~~~~~~~~~~~ 612 (617)
.+++|+ +.+++ +.++|+|++. .+++.++++++...+++|..
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 328 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKH 328 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSC
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceE
Confidence 998876 44443 4688888864 36789999988766666653
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=384.60 Aligned_cols=309 Identities=15% Similarity=0.162 Sum_probs=247.6
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCC-CCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCChH
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLA 307 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~-~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl~ 307 (617)
.+.+.+++.+.. +.......+ +|+++|+|||||||.||||++||+++.+...... ..+++.++|++++++|+.
T Consensus 64 P~~~~~~l~~~~---p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (436)
T 3qov_A 64 PFTTKSDMRANY---PFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYG 140 (436)
T ss_dssp CCBCHHHHHHTT---TTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCT
T ss_pred CCCCHHHHHhcC---CCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccc
Confidence 345556665432 122234456 8999999999999999999999999977665543 235789999999999997
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 007119 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (617)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (617)
|..+.+. .+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.......
T Consensus 141 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 201 (436)
T 3qov_A 141 MFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI------------------- 201 (436)
T ss_dssp TCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC-------------------
T ss_pred cchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC-------------------
Confidence 6666554 567899999999876 7999999999999999999999999998875322110
Q ss_pred HHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCC
Q 007119 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH 464 (617)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~ 464 (617)
.. ..+++|.+++||+++++++.+++++.||++++++||+||+++. +..... ....
T Consensus 202 ------~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g 257 (436)
T 3qov_A 202 ------DP---------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNG 257 (436)
T ss_dssp ------CT---------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSS
T ss_pred ------Cc---------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCe
Confidence 00 0148999999999999999999999999999999999999654 332221 1123
Q ss_pred cCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCC------c-
Q 007119 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R- 537 (617)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~- 537 (617)
.|.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++| +
T Consensus 258 ~~~~~~~~~v~i~d~~~g~~~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~ 321 (436)
T 3qov_A 258 MHFWEDCYLVEIIDPETGEPVPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHL 321 (436)
T ss_dssp EEECTTTEEEEEECTTTCSBCSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSC
T ss_pred eEEccCceEEEEEECCCCCCCCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCcc
Confidence 6677789999999988888888887 899999983 44556 78999999999999998 6
Q ss_pred --EEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeC---------HHHHHHHHHHc
Q 007119 538 --LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVD---------QDALKAWAASE 603 (617)
Q Consensus 538 --l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~---------~~~~~~~~~~~ 603 (617)
++|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++ .+++.++++++
T Consensus 322 ~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~ 400 (436)
T 3qov_A 322 RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ 400 (436)
T ss_dssp EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHHHHHHHHHH
Confidence 6999999999998 899999999999999999999999998764 36899999985 24566666554
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=381.71 Aligned_cols=309 Identities=17% Similarity=0.137 Sum_probs=246.8
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-HH
Q 007119 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AH 308 (617)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h 308 (617)
+.+.+++.+... .......++++++|+|||||||.||||++||+++........ ..+++.++|++++.+|+ +|
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEccccccc
Confidence 455666654321 123345678999999999999999999999999887654433 24678899999999998 78
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+......
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~---------------------- 204 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG---------------------- 204 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT----------------------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC----------------------
Confidence 888877788899999998776 699999999999999999999999999877432110
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCCcC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (617)
... ..+++|.+++||+++++++.+++++.||++++++||+||+++. ++...+.. ..+ .+
T Consensus 205 ---~~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~ 264 (437)
T 2y27_A 205 ---LDP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET-KDG-PT 264 (437)
T ss_dssp ---CCG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT-CSS-CE
T ss_pred ---CCc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC-CCc-ee
Confidence 000 0148999999999999999999999899999999999998433 33322211 112 55
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec-CCcE-----EE
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----KI 540 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i 540 (617)
.|.++++++|+|++++..++.|+ .|||+|+| .|++.| .++||+|||+|++++ +|++ +|
T Consensus 265 ~~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~------------~t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i 328 (437)
T 2y27_A 265 IWEDHFYPEIIDPETGEVLPDGE---LGELVFTS------------LTKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKI 328 (437)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEE------------SSCSSS-CCCSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCceEEEEEcCCCCCCCCCCC---ccEEEEec------------CCcCCc-hhheeecCCEEEEeCCCCCCccccCcc
Confidence 67789999999977788888776 89999998 245566 789999999999999 6986 99
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH---------HHHHHHHHHc
Q 007119 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ---------DALKAWAASE 603 (617)
Q Consensus 541 ~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~---------~~~~~~~~~~ 603 (617)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.++++++
T Consensus 329 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~ 402 (437)
T 2y27_A 329 TGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYD 402 (437)
T ss_dssp CEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHH
T ss_pred ccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHH
Confidence 9999999997 899999999999999999999998888542 357899998764 4566777654
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=380.60 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=247.6
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCCh-H
Q 007119 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-A 307 (617)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl-~ 307 (617)
.+.+.+++.+.. +.......++++++|+|||||||.||||++||+++......... .+++.++|++++.+|+ +
T Consensus 71 P~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 71 PFSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CCBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred CCCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence 345667765432 11223456789999999999999999999999998876544332 4678899999999999 5
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 007119 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (617)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (617)
|..++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.......
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~-------------------- 207 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM-------------------- 207 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC--------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC--------------------
Confidence 7777777788899999998876 7999999999999999999999999998774321100
Q ss_pred HhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccc-cccCCCCCCCCCCc
Q 007119 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465 (617)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~v 465 (617)
. ...+++|.+++||+++++++.+++++.||+++++.||+||+++. +....+.. ..+ .
T Consensus 208 -----~---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~ 265 (443)
T 2y4o_A 208 -----D---------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG-P 265 (443)
T ss_dssp -----C---------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS-E
T ss_pred -----C---------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc-e
Confidence 0 00148999999999999999999999999999999999997443 33222211 112 4
Q ss_pred CCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC-CcE-----E
Q 007119 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----K 539 (617)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~ 539 (617)
+.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +
T Consensus 266 ~~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~ 329 (443)
T 2y4o_A 266 VIWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAK 329 (443)
T ss_dssp EECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECC
T ss_pred EEccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCc
Confidence 556789999999977788888776 899999982 45566 7899999999999999 997 8
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH-----------HHHHHHHHHc
Q 007119 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ-----------DALKAWAASE 603 (617)
Q Consensus 540 i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~-----------~~~~~~~~~~ 603 (617)
|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.++++++
T Consensus 330 i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~ 406 (443)
T 2y4o_A 330 ITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHR 406 (443)
T ss_dssp CCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHH
Confidence 99999999997 899999999999999999999999888542 357889999876 4567777664
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=272.27 Aligned_cols=236 Identities=16% Similarity=0.165 Sum_probs=175.6
Q ss_pred CCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 007119 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (617)
Q Consensus 253 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~~~~~ 328 (617)
..++++++|+|||||||.||||+++|+++........ ...++.++|++++.+|+ +|.+++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999998887543 44678899999999999 99999988888899999 4444
Q ss_pred -cCChh-----------------------hHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 007119 329 -QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (617)
Q Consensus 329 -~~~~~-----------------------~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (617)
.+++. .+++.++++++|++.++|+++..|++....
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------- 225 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------- 225 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH---------------------
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh---------------------
Confidence 36777 788899999999999999999998763110
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHH-Hhh-CCceeccccccccccccccCCCCCCCC
Q 007119 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLS 462 (617)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~ 462 (617)
.....+++|.+++||+++++++.++++ +.| ++++++.||+||+++++.....
T Consensus 226 ---------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----- 279 (369)
T 3hgu_A 226 ---------------------VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----- 279 (369)
T ss_dssp ---------------------HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----
T ss_pred ---------------------hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----
Confidence 000013899999999999999999999 899 8999999999999876543221
Q ss_pred CCcCCC------CcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC-
Q 007119 463 GHVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG- 535 (617)
Q Consensus 463 ~~vG~p------~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d- 535 (617)
.++|.| .++++++|+|+++++.++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 280 ~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~ 342 (369)
T 3hgu_A 280 TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGV 342 (369)
T ss_dssp CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCS
T ss_pred ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCC
Confidence 158999 999999999976888888887 9999999732 1111 124777887777543
Q ss_pred -C-------cEEEEecCCCeeecCCee
Q 007119 536 -G-------RLKIIDRKKNIFKLAQGE 554 (617)
Q Consensus 536 -G-------~l~i~gR~~d~ikl~~G~ 554 (617)
| .+..++|.++..|+ .|.
T Consensus 343 ~g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 343 SGFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp TTCSSCEEEEEEECC------------
T ss_pred CCCcCcccccceeccccCCCcee-eec
Confidence 2 24556777777776 454
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-07 Score=100.86 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-CCcee-ccccccccccccccCCCCCCCCCCcCC-CCcC-eEEEEeecCCC------
Q 007119 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAA-CEIKLVDVPEM------ 482 (617)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~ivd~~~~------ 482 (617)
+..+++||. ..-...++..+ +.+++ ..|+.||+.. .....+. ..++..+. .+|+ .=+..++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~-~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYF-GLNLNPM-SKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEE-EECSCTT-SCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceee-eeecCCC-CCcccCceeecCCcEEEEEEecccccccccc
Confidence 555666763 33334555544 56766 9999999743 2222111 11122222 1222 22334443332
Q ss_pred ---------CCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec----CCcEEEEecCCCeee
Q 007119 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFK 549 (617)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~gR~~d~ik 549 (617)
..+..| ..+||.|... .|.|+ |++||+.+++. ...+.|+||.+++|.
T Consensus 382 ~~~~~~v~l~eVe~G---~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~ 441 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVG---KEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLS 441 (609)
T ss_dssp SSCCCCEEGGGCCTT---CEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCccccHhHcCCC---CeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEE
Confidence 112223 3789999653 34442 99999999974 468999999999999
Q ss_pred cCCeeeechHHHHHHHh
Q 007119 550 LAQGEYIAAEKIENVYA 566 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~ 566 (617)
+ .|++|++++||+++.
T Consensus 442 ~-~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 442 I-DSDKTDEAELQKAVD 457 (609)
T ss_dssp S-SSCCBCHHHHHHHHH
T ss_pred c-cccCCCHHHHHHHHH
Confidence 7 899999999999996
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-08 Score=102.42 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-CCcee-ccccccccccccccCCCCCCCCCCcCCC-CcC-eEEEEeecCCCC---C-
Q 007119 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEMN---Y- 484 (617)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~ivd~~~~~---~- 484 (617)
+..+++||. ..-...++..+ +.+++ ..|+.||+.. .....+ ...+..+|.. +|+ +=+..++.++.. .
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p-~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINLDP-LCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEE-EECSCT-TSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCcccccccee-eeccCC-CCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 566667773 33344555544 57777 9999999642 221111 1111122221 222 223444433221 0
Q ss_pred -CCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEec----CCcEEEEecCCCeeecCCeeeechH
Q 007119 485 -TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYIAAE 559 (617)
Q Consensus 485 -~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~gR~~d~ikl~~G~~i~p~ 559 (617)
...-+.+..+||.|+..+ |-| -|++||+.++.. ...+.|+||.|+++.+ .||+++++
T Consensus 377 ~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 377 DLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred CHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 011112237899998642 222 189999999985 3579999999999997 89999999
Q ss_pred HHHHHHhcC
Q 007119 560 KIENVYAKC 568 (617)
Q Consensus 560 ~IE~~l~~~ 568 (617)
+||+++.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999744
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-07 Score=98.88 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=93.1
Q ss_pred CceE---EEEEcCCCCcHHHHHHHHHhh-CCcee-ccccccccccccccCCCCCCCCCCcCC-CCcCe-EEEEeecCCC-
Q 007119 411 GRVR---FMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAAC-EIKLVDVPEM- 482 (617)
Q Consensus 411 ~~lr---~i~~gga~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~ivd~~~~- 482 (617)
++++ .+++|+. ..-...++..+ +.+++ .+|+.||+.. .....+ ...++.++. .+|+. =+..++.++.
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p-~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTP-RLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCT-TSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccceee-eeecCC-CCCccccceeecCCcEEEEEEeccccc
Confidence 4664 4444543 23334555555 56776 9999999743 222212 122222222 22332 2233332221
Q ss_pred ---------CCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecC----CcEEEEecCCCeee
Q 007119 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFK 549 (617)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~gR~~d~ik 549 (617)
..+..| ..+||.|...+ |-| -|++||+.++..- ..+.|+||.++++.
T Consensus 377 ~~~~~~v~l~eve~G---~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 377 EGEEKPVGLTQVKIG---EEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ---CCCEEGGGCCTT---CEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCceeeHHHcCCC---CeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 112233 37899998642 322 1899999998742 46999999999999
Q ss_pred cCCeeeechHHHHHHHhc------CCC--cceEEEEeeCCC--CeEEEEEE----eCHHHHHHHH
Q 007119 550 LAQGEYIAAEKIENVYAK------CKF--VGQCFVYGDSFN--SALVAIVS----VDQDALKAWA 600 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~------~p~--V~~~~V~g~~~~--~~~va~vv----~~~~~~~~~~ 600 (617)
+ .|+++++.+||+++.+ ..+ |.+-.++.+... .+-+.++. |+++.+.++|
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~ 500 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 500 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEESSCCCHHHHHHHH
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeecCCCCHHHHHHHH
Confidence 7 8999999999999964 223 555555554322 34444445 3445566654
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=78.71 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.9
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (617)
.|.|||||+ +|.||+|.+||+++.+||+|.+++|++.++. +.++++|+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~ 53 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELS 53 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEe
Confidence 389999997 8999999999999999999999999886543 4677777753
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.96 Score=46.76 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=89.9
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (617)
.++.++++.. ..|+.|. ...+|.+.+...+..++..+...|+.++|++..+.+-. ...+...++++..|+..++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3456665543 2566554 34579999988888888888888999999999888753 3334557888999999887
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
+.. ..++.+...+++.++.++++.+..+..+.+... ..+.++.+++-++
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 665 478899999999999999999887776655432 1246777666543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=93.15 E-value=1 Score=46.54 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=89.9
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (617)
.++.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+..++
T Consensus 90 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 3455665433 26666653 4578999988888888888888999999999888753 3344567888899999887
Q ss_pred cCCCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
+... .++.+...+++.++.++++.+..+..+.+... ..+.++.+++-++
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 7654 78889999999999999999887776655322 1256777766543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.86 Score=47.08 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=90.2
Q ss_pred CCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 007119 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLY 169 (617)
Q Consensus 94 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~ 169 (617)
+.++++.. ..|+.|. ...+|.+.+...+..++..+...|+.++|++..+.+-+ ...+..+++++..|+..++..
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45565443 2566554 34579999998888888888888999999999988743 444556788899999988765
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchHHHHhhcc------CCCCceEEEEECC
Q 007119 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (617)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~~~~iv~~~~ 217 (617)
. ..++.+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 4 467889999999999999999887776655422 1456777776554
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=82.32 E-value=23 Score=37.31 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=85.6
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISV 166 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~v 166 (617)
.|+.+|++.. ..|++|. ...+|.+.+...+..... ..++.++|++..++|-...+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777654 2565553 345799888776655544 34788999998888866443 22 4788899999988
Q ss_pred ecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhc----cCCCCceEEEEECC
Q 007119 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (617)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~~~~iv~~~~ 217 (617)
... ...++.+...+++.++.+++..+..+..+.+.. ..+++++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 654 567889999999999999999888777665432 24567887776554
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=81.84 E-value=23 Score=36.89 Aligned_cols=119 Identities=15% Similarity=0.028 Sum_probs=84.2
Q ss_pred cCCCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007119 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (617)
.|+.+|++.. ..|+.|. ...+|.+.+...+..+.. ..++.++|++..++|-...+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777654 2566554 345788888777666554 34889999998888765433 33467788899988776
Q ss_pred CCCCCHHHHHHHHHhccccEEEecccchHHHHhhccC-CCCceEEEEEC
Q 007119 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIG 216 (617)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~iv~~~ 216 (617)
. ...++.+...+++.++.++++.+..+..+.+.... ...++.++.-+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 5 57899999999999999999998887777665432 22566665533
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=81.05 E-value=7.3 Score=38.86 Aligned_cols=105 Identities=12% Similarity=-0.043 Sum_probs=70.6
Q ss_pred cCCCccEEEEEeecCccCce--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007119 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (617)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (617)
.++.++.+.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ .--+...+++...|+++++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3556566544 26666543 3468888888887777777778999999999988862 2223445556889996555
Q ss_pred cCCCCCHH-----------------------HHHHHHHhccccEEEecccchHHHH
Q 007119 168 LYDTLGPD-----------------------AVKYIVNHASVQAVFCVPQTLNSLL 200 (617)
Q Consensus 168 l~~~~~~~-----------------------~l~~il~~~~~~~vi~~~~~~~~l~ 200 (617)
.. ..+. .+..++++.++.++++.+..+..+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 3444 6666889999999998877665554
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=80.90 E-value=10 Score=40.31 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=83.0
Q ss_pred CCccEEEEEeecCccCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEecC
Q 007119 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPLY 169 (617)
Q Consensus 94 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~ 169 (617)
+.+|++.. ..|+.|. ...+|.+.+...+......+...++.++|++..+++-...+ ...+++++ .|+..+.+.
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66776654 2565553 34579998877666555443335788999988888766443 33456777 999888765
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchHHHHhhcc----CCCCceEEEEEC
Q 007119 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (617)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~~~~iv~~~ 216 (617)
...++.+...+++.++.++++.+..+..+.+... .++.++.++.-+
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 5788999999999999999999887777665321 345677666533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 617 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 9e-74 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 7e-66 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 8e-66 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 5e-59 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-43 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-42 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-40 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 246 bits (630), Expect = 9e-74
Identities = 79/520 (15%), Positives = 162/520 (31%), Gaps = 86/520 (16%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
+ K ++Y E + L+ GI KG + +Y PE + AC+ + +
Sbjct: 99 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC-----------LSEVPTVRLIVVIGG 217
+ P+AV + +S + V + + + S V +V ++V+
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218
Query: 218 IDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLS 277
I + L + S +D I YTSG+TG PKG + +
Sbjct: 219 TGSDIDWQEGRD-----LWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 273
Query: 278 HGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG----- 330
G + A ++P D+Y + + + + + G ++G
Sbjct: 274 TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333
Query: 331 DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
++ + + + + P L A + S
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIR------------------ALMAEGDKAIEGTDRS- 374
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG---RVTEGYGMTE 447
+R +GS P++P+ ++ G V + + TE
Sbjct: 375 ---------------------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 448 TS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPL 502
T + + +G P + LVD +E P G + +
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-------NEGHPQEGATEGNLVITDSW 466
Query: 503 --IFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
+ + D + ++ + +GD G I R ++ ++ G +
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGT 525
Query: 559 EKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDA 595
+IE+ + + V G A+ A V+++
Sbjct: 526 AEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE 565
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 223 bits (568), Expect = 7e-66
Identities = 110/545 (20%), Positives = 193/545 (35%), Gaps = 66/545 (12%)
Query: 73 PDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131
P +P E GT + +A+ + GT D + +TY E + +
Sbjct: 10 PFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVN--ITYAEYFEMSVRLAEAMK 65
Query: 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
+G++ I + N ++ + P D + +N + VF
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ L +L+ ++P ++ I+++ D + + +T + P S
Sbjct: 126 SKKGLQKILNVQKKLPIIQKIIIM---DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAH 308
+ +A I +SG+TG PKG L H + A G + P +S +P H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242
Query: 309 IYERANQVMTVYSGVA-VGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ + + G V Y+ + + + + VP L++
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--------- 293
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
K+ L GA
Sbjct: 294 -----------------------KSTLIDKYDL---------SNLHEIASGGAPLSKEVG 321
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
K + +GYG+TET+ I EGD+ G VG E K+VD+
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 381
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+Q GE+CVRGP+I GY + T +ID+DGW H+GDI W I+DR K++
Sbjct: 382 NQR---GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKA 598
K G +A ++E++ + + V G D A+V ++ + +
Sbjct: 439 IKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 497
Query: 599 WAASE 603
+ AS+
Sbjct: 498 YVASQ 502
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 222 bits (567), Expect = 8e-66
Identities = 109/535 (20%), Positives = 177/535 (33%), Gaps = 83/535 (15%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
D RA F + + GE TY E + GL G+ G
Sbjct: 12 NLWDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ N L A + L P + YI+NHA + + P L +
Sbjct: 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126
Query: 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
+ E+ TV+ VV+ + +
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPEGYLAYE--------------EALGEEADPVRVPERAAC 172
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYERANQVM 317
+ YT+GTTG PKG V SH L+ A+ GT DV + +P+ H+
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232
Query: 318 TVYSGVAVGFY--QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375
G + D L++ T VP ++ +
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL------------------ 274
Query: 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF 435
+ + +R + G S ++ +
Sbjct: 275 ------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFE-RM 309
Query: 436 GGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
G V +GYG+TETS ++ Q +E L G P +++ D E
Sbjct: 310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 368
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+D GE+ ++GP I GYY +E T+ + DG+F TGDI +W G ++I DR
Sbjct: 369 VPKDGKAL-GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDAL 596
K++ K GE+I++ +EN V + V + +A+V +
Sbjct: 428 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP 481
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 206 bits (525), Expect = 5e-59
Identities = 93/531 (17%), Positives = 177/531 (33%), Gaps = 77/531 (14%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ +TY E +V L Y G+ KG + +Y PE +I A S I
Sbjct: 86 GQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSV 145
Query: 168 LYDTLGPDAVKYIVNHASVQAVFC---------VPQTLNSLLSCLSEVPTVRLIVVIGGI 218
++ ++++ +N + V V +T + L E P VR ++V
Sbjct: 146 VFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT 205
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
++ + + P +P +D + YTSG+TG PKG S
Sbjct: 206 NNPSVAFH----APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHST 261
Query: 279 -GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-----D 331
G L+ ++ + DV+ + + I V + G A ++G +
Sbjct: 262 AGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN 321
Query: 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391
+ D + + T F P L A + + L
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRL------------------LKRAGDSYIENHSLK-- 361
Query: 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR---VTEGYGMTET 448
+R +GS P++ +V ++ G + + Y TE+
Sbjct: 362 --------------------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 401
Query: 449 SCLISQLDEGDNL---SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLI 503
+ G G P + ++D + G + V+ P
Sbjct: 402 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSF 459
Query: 504 FKGYYKDEIQTKEVI--DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561
+ +K+ + + G++ TGD G + I+ R ++ + G ++ +I
Sbjct: 460 ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEI 518
Query: 562 ENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDALKAWAASEGIQSLA 609
E + V +C V G D A+ A V + + + A + +Q +
Sbjct: 519 EAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIK 569
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 160 bits (405), Expect = 3e-43
Identities = 88/551 (15%), Positives = 168/551 (30%), Gaps = 109/551 (19%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY 132
++P T H F V + V + V E + +TY E ++ I
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPN------NVAI---VCENEQLTYHELNVKANQLARIFIE 67
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI K + +G+ + I A VP+ + ++YI++ + + +
Sbjct: 68 KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 127
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
++ + I Q+ + + R P
Sbjct: 128 KHLVHLIH-------------------------NIQFNGQVEIFEEDTIKIREGTNLHVP 162
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K D+A + YTSGTTG PKG +L H + D + ++
Sbjct: 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV 222
Query: 313 ANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
M + +G ++ D +K + TV P + +++T
Sbjct: 223 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQT- 281
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
+ + S SP ++
Sbjct: 282 -----------------------------------------------LITAGSATSPSLV 294
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSED 488
+ K YG TET+ + GH A + +
Sbjct: 295 N--KWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQI----YIVDENL 348
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLK 539
Q GE+C+ G + +GY+K T + + + TGD W+ G ++
Sbjct: 349 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIE 408
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV----SVD 592
+ R N K+ G + E++E++ K ++ + V L A +
Sbjct: 409 YLGRIDNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467
Query: 593 QDALKAWAASE 603
+ L+ +++ E
Sbjct: 468 LEQLRQFSSEE 478
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 158 bits (400), Expect = 1e-42
Identities = 88/541 (16%), Positives = 154/541 (28%), Gaps = 88/541 (16%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T ++ RA D+ L +T+ E V + L G+
Sbjct: 3 TVNEMLRRAATRAPDHCALAV-------PARGLRLTHAELRARVEAVAARLHADGLRPQQ 55
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV--PQTLN 197
+ + N + +I A + L L + ++ + A Q +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 198 SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDD 257
++ S + L ++ + PI +P
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPI---------------------EDPQREPAQ 154
Query: 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317
A I YTSGTTG PK A++ + V + + + + +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
V + G Y D L + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD--------------ALAA 260
Query: 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG 437
AA +A L +R + + + VL+ + G
Sbjct: 261 AAAHAGSSLKLD----------------------SLRHVTFAGATMPDAVLETVHQHLPG 298
Query: 438 RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE-- 495
YG TE + G + +++ D+ GE
Sbjct: 299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG-------VDEIVANGEEG 351
Query: 496 --ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
I F GY T E + +DGW+ T D+ +W P G ++I+ R ++ G
Sbjct: 352 ELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GG 409
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWAASEG 604
E I +IE V V + V G + ++ A V ++ DAL + S
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 605 I 605
+
Sbjct: 470 L 470
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 152 bits (385), Expect = 2e-40
Identities = 95/540 (17%), Positives = 159/540 (29%), Gaps = 82/540 (15%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T D + D + T G W +Y E T + +G GI +
Sbjct: 26 TFGDLLRDRAAKYGDRIAI--------TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ + N E+ V A + V + + Y A A
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 200 LSCL-----SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK 254
L S++PT++ I+V G ++ +P L + K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DVA + + G+TG K +H + I S+ + S VY++
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAA----------- 229
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
N L V + +
Sbjct: 230 ------------LPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
L A S ++ L G + S + +K
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQ----------------VGGAKFSAEAARRVKAV 321
Query: 435 FGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
FG + + +GM E ++LD+ + + G P + + V + +P
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR---DVKPGET 378
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
G + RGP +GYYK E EDG++ TGDI G + + R K+ G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRG-G 437
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV-----SVDQDALKAWAASEGI 605
E +AAE++EN V + + + LKA+ G+
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGL 497
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.2e-71 Score=618.61 Aligned_cols=483 Identities=17% Similarity=0.257 Sum_probs=392.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
..+-...+|.++++.+||++|+++. ....++.+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 70 ~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~l 146 (643)
T d1pg4a_ 70 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 146 (643)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHH
Confidence 3444566777888999999999986 4444567889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhcc--CCCCceEEEEECCCCCCCCCC
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~--~~~~~~~iv~~~~~~~~~~~~ 225 (617)
||+++|++++|+++.++++++.+++++++++++|+++.. ...+..... ..+.++.++.+.........
T Consensus 147 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~- 225 (643)
T d1pg4a_ 147 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW- 225 (643)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-
T ss_pred HHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc-
Confidence 999999999999999999999999999999999997642 122222222 34667778877654322111
Q ss_pred CccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeC
Q 007119 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYL 304 (617)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~l 304 (617)
.......+.+....... ...+...+++|+++|+|||||||.||||++||++++..... ....+.+.++|++++++
T Consensus 226 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~ 301 (643)
T d1pg4a_ 226 ---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 301 (643)
T ss_dssp ---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred ---ccccchhhhhhhcccCc-ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeC
Confidence 11123445555443322 23445567899999999999999999999999997655443 34457889999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 007119 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (617)
Q Consensus 305 Pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (617)
|++|++++.. .+.+|+.|+++++++ .++..+++.++++++|++.++|++++.|.+.....
T Consensus 302 p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~-------------- 367 (643)
T d1pg4a_ 302 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA-------------- 367 (643)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG--------------
T ss_pred ChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh--------------
Confidence 9999999876 457899999999986 37899999999999999999999999886521100
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---CceeccccccccccccccC
Q 007119 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (617)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~ 455 (617)
.+....++||.+++||+++++++.+++.+.++ +++++.||+||+++.++..
T Consensus 368 --------------------------~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~ 421 (643)
T d1pg4a_ 368 --------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 421 (643)
T ss_dssp --------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC
T ss_pred --------------------------ccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEec
Confidence 01111258999999999999999999999884 6799999999998776655
Q ss_pred CCCC--CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhccc--CCCCeeeecce
Q 007119 456 DEGD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDI 529 (617)
Q Consensus 456 ~~~~--~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDl 529 (617)
.+.. .+.+++|+|++|++++|+| ++++.++.++ .|||+|+| |+++.|||++++.+.+.+ ..+|||+|||+
T Consensus 422 ~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~---~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl 497 (643)
T d1pg4a_ 422 LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 497 (643)
T ss_dssp CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred CCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCc---eEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCE
Confidence 4433 5679999999999999999 5667776665 89999999 568999999999888765 35899999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHH
Q 007119 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALK 597 (617)
Q Consensus 530 g~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~~~ 597 (617)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++ +.++|+|++++ .+++
T Consensus 498 ~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~ 576 (643)
T d1pg4a_ 498 ARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVR 576 (643)
T ss_dssp EEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999997 8999999999999999999999999997654 57999999743 2688
Q ss_pred HHHHHcCCCCChhhh
Q 007119 598 AWAASEGIQSLAPSD 612 (617)
Q Consensus 598 ~~~~~~~~~~~~~~~ 612 (617)
+|++++..++++|+.
T Consensus 577 ~~~~~~L~~~~vP~~ 591 (643)
T d1pg4a_ 577 NWVRKEIGPLATPDV 591 (643)
T ss_dssp HHHHHHTCGGGCCSE
T ss_pred HHHHhhCCcccCccE
Confidence 899988665666543
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-70 Score=610.98 Aligned_cols=486 Identities=18% Similarity=0.220 Sum_probs=389.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVD 155 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (617)
..+..+.+|.++++++||++|+++. +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++||++++
T Consensus 57 ~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~ 133 (640)
T d1ry2a_ 57 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 133 (640)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred chhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 4456688899999999999999986 444566788999999999999999997 679999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccc---------hHHHHhhccCCCCceEEEEECCCCCCCCCCC
Q 007119 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226 (617)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~ 226 (617)
+||+++|++++|+++.++++++.++++++++++++++... ...+.+.......+.....+.........
T Consensus 134 lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 211 (640)
T d1ry2a_ 134 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-- 211 (640)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC--
T ss_pred HHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccc--
Confidence 9999999999999999999999999999999999998643 23344444455556656555443221111
Q ss_pred ccCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhh-cCcccCCCcEEEEeCC
Q 007119 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLP 305 (617)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lP 305 (617)
........+....... .......+..++|+++|+|||||||.||||+++|++++....... ..+.+.++|++++++|
T Consensus 212 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~p 289 (640)
T d1ry2a_ 212 -FHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289 (640)
T ss_dssp -CCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred -cccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccc
Confidence 1111223333333222 222344556789999999999999999999999999877655444 3477899999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 007119 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (617)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (617)
++|+++... .+.+|+.|+++++++ .++..+++.|+++++|++.++|++++.|.+....
T Consensus 290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------- 353 (640)
T d1ry2a_ 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---------------- 353 (640)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------------
T ss_pred hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccc----------------
Confidence 999999776 567899999999876 3789999999999999999999999877541000
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhC---CceeccccccccccccccCC
Q 007119 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLD 456 (617)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~~~ 456 (617)
.......++||.+++||+++++++.+++++.+| ++++++||+||++..++...
T Consensus 354 ------------------------~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~ 409 (640)
T d1ry2a_ 354 ------------------------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 409 (640)
T ss_dssp ------------------------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred ------------------------ccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccccccc
Confidence 000111258999999999999999999999986 46999999999987665544
Q ss_pred CCC---CCCCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeC--ccccccccCChhhhhccc--CCCCeeeecce
Q 007119 457 EGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDI 529 (617)
Q Consensus 457 ~~~---~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDl 529 (617)
..+ .+.+++|+|++|++++|+|.+++....... ..|||+++| |+++.|||++++.|.+.| +.+|||+|||+
T Consensus 410 ~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~--~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDl 487 (640)
T d1ry2a_ 410 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487 (640)
T ss_dssp TTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred CCCcCCCCCcccccccCCceEEEEeCCCCcccCCCC--ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCc
Confidence 332 567899999999999999965544433332 379999998 689999999999999987 45699999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------------
Q 007119 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------------- 593 (617)
Q Consensus 530 g~~~~dG~l~i~gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------------- 593 (617)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++ +.++|+|++.+
T Consensus 488 g~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~ 566 (640)
T d1ry2a_ 488 AAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQ 566 (640)
T ss_dssp EEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CC
T ss_pred eeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHH
Confidence 999999999999999999996 8999999999999999999999999997754 57999999864
Q ss_pred ---HHHHHHHHHcCCCCChhhh
Q 007119 594 ---DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 594 ---~~~~~~~~~~~~~~~~~~~ 612 (617)
+.+.++++++..++++|+.
T Consensus 567 ~l~~~l~~~~~~~L~~~~~P~~ 588 (640)
T d1ry2a_ 567 DIKKHLVFTVRKDIGPFAAPKL 588 (640)
T ss_dssp SHHHHHHHHHHHHTCTTTSCSE
T ss_pred HHHHHHHHHHHhhCCCCCCceE
Confidence 3477788877666766654
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.5e-70 Score=594.54 Aligned_cols=471 Identities=24% Similarity=0.315 Sum_probs=376.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007119 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (617)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (617)
...||+++|+++++++||++|+++. + .++.+++||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 83 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 83 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence 3458999999999999999999875 2 3556789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeH
Q 007119 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (617)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 236 (617)
||+++|++++|+++.++.+++.++|+++++++++++.............++.++.++........ .....
T Consensus 84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 153 (534)
T d1v25a_ 84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------GYLAY 153 (534)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccc----------ccccc
Confidence 99999999999999999999999999999999999999988888888888888777765442211 01111
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhc--CcccCCCcEEEEeCChHHHHHHHH
Q 007119 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--GTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
.... ....+.....++++++|+|||||||.||||+++|.+++........ .+....+|++++++|++|.+++..
T Consensus 154 ~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~ 229 (534)
T d1v25a_ 154 EEAL----GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 229 (534)
T ss_dssp HHHC----CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH
T ss_pred cccc----cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc
Confidence 1111 1122344567889999999999999999999999999876654433 366788999999999999999999
Q ss_pred HHHHHHhCcEEEEec--CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcCCC
Q 007119 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (617)
.+..+..|+++++.. .++..+...+.++++|++.++|.++..+.......
T Consensus 230 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~---------------------------- 281 (534)
T d1v25a_ 230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST---------------------------- 281 (534)
T ss_dssp HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH----------------------------
T ss_pred cceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccc----------------------------
Confidence 888888888888765 78999999999999999999999999887642211
Q ss_pred CCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC-----------CC
Q 007119 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NL 461 (617)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~ 461 (617)
....++||.+++||+++++++.+++++ ++.+++++||+||++.+++...... ..
T Consensus 282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (534)
T d1v25a_ 282 --------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 346 (534)
T ss_dssp --------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHH
T ss_pred --------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccc
Confidence 112268999999999999999999986 4899999999999998776554332 12
Q ss_pred CCCcCCCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEE
Q 007119 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (617)
Q Consensus 462 ~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (617)
.+++|+|++|++++|+| ++++.++.+.. +.|||+|+|++++.|||++++.|++.|..||||+|||+|++|+||+|+++
T Consensus 347 ~~~~G~p~~g~~~~i~d-~~~~~~~~~~~-~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~ 424 (534)
T d1v25a_ 347 KAKTGLPIPLVRLRVAD-EEGRPVPKDGK-ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK 424 (534)
T ss_dssp HTSCBEECTTCEEEEEC-TTSCBCCSSSC-CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred cccceeccCCcEEEEEC-CCCCCCCCCCC-eeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEe
Confidence 47899999999999999 56666655321 38999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHcCCCCChhhh
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASEGIQSLAPSD 612 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~~~~~~~~~~~~~~~~~~ 612 (617)
||+||+||+ +|++|+|.+||++|.+||+|.||+|+|.+++ +.++|+|+++. +.++.+++++..++++|..
T Consensus 425 GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~ 503 (534)
T d1v25a_ 425 DRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDA 503 (534)
T ss_dssp EESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSB
T ss_pred cccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccE
Confidence 999999996 8999999999999999999999999997653 47889988643 3344456665545666543
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=6.3e-69 Score=587.44 Aligned_cols=475 Identities=22% Similarity=0.317 Sum_probs=388.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
..|+.++|.+.+++++++|+.+.. .|.. ..+.+||+||.+++.++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 16 ~~t~~~~l~~~~~~~~~~P~~~a~--~d~~--~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 16 DGTAGEQLHKAMKRYALVPGTIAF--TDAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SSCHHHHHHHHHHHHHTSTTCEEE--EETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCeEEE--EeCC--CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 459999999999999555543322 1221 124699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|+++||+++.++.+++.++|++++++++|++.+..+.+.++...++..+.+++++...+. ..+..+.
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 162 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSMY 162 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBEEHH
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc---------cccchhh
Confidence 9999999999999999999999999999999999999999998888889999888887653221 1123333
Q ss_pred HHHhcCc------cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChHH
Q 007119 238 NLLSQGR------SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAH 308 (617)
Q Consensus 238 ~l~~~~~------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h 308 (617)
+...... ....+.....++++++|+|||||||.||||++||++++......... ..+.+++++++++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 242 (541)
T d1lcia_ 163 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242 (541)
T ss_dssp HHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred hhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 3322111 11123344567899999999999999999999999998876665543 45778999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 007119 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (617)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (617)
.++....+..+..|+.++... .+.......+..+++|.+..+|.++..+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------------------- 297 (541)
T d1lcia_ 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------- 297 (541)
T ss_dssp HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC-------------------------
T ss_pred cccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccc-------------------------
Confidence 999988888888888887766 788999999999999999999999988765210
Q ss_pred hcCCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCC-ceeccccccccccccccCCCCCCCCCCcC
Q 007119 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (617)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (617)
.......++|.+++||+++++++.+++.+.++. .++++||+||+++.++.....+...+++|
T Consensus 298 -----------------~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG 360 (541)
T d1lcia_ 298 -----------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG 360 (541)
T ss_dssp -----------------GGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCB
T ss_pred -----------------ccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccc
Confidence 011112589999999999999999999998865 58999999999998888777778889999
Q ss_pred CCCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCC
Q 007119 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (617)
Q Consensus 467 ~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d 546 (617)
+|+|+++++|+|++++..++.|+ .|||+|+|++++.|||++++.+...+..+|||+|||+|++|+||.++++||+||
T Consensus 361 ~p~~~~~~~i~d~d~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d 437 (541)
T d1lcia_ 361 KVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 437 (541)
T ss_dssp EECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----
T ss_pred cccCCCEEEEEECCCCcCCCCCC---eEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecC
Confidence 99999999999988888888887 899999999999999999999999998899999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCCC-Chhh
Q 007119 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQS-LAPS 611 (617)
Q Consensus 547 ~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~~-~~~~ 611 (617)
+||+ +|++|+|.+||++|.+||+|.+|+|+|.++. +.++|+|++. .+++.++++++..++ .+|.
T Consensus 438 ~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~ 511 (541)
T d1lcia_ 438 LIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRG 511 (541)
T ss_dssp CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTT
T ss_pred EEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCc
Confidence 9997 8999999999999999999999999997543 4788999863 478999999887653 3454
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1e-65 Score=558.48 Aligned_cols=448 Identities=19% Similarity=0.266 Sum_probs=373.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007119 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (617)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (617)
.|...||.++|+++|+++||++|+++. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|+++
T Consensus 19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~ 89 (514)
T d1amua_ 19 YPRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89 (514)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHH
Confidence 457889999999999999999999863 2 4599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEe
Q 007119 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (617)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 234 (617)
++||+++|++++|+++.++.+++.+++++++++++|++....+.+...... .. .......
T Consensus 90 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~-~~~~~~~---------------- 149 (514)
T d1amua_ 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN---GQ-VEIFEED---------------- 149 (514)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC---SE-EEECCCS----------------
T ss_pred HHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc---cc-ccccccc----------------
Confidence 999999999999999999999999999999999999998876665443221 11 1111110
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 007119 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (617)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (617)
............+..++|+++|+|||||||.||+|++||+++..........+....+|++++.+|++|.+++..
T Consensus 150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 224 (514)
T d1amua_ 150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE 224 (514)
T ss_dssp -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred -----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc
Confidence 001111122334567899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHhCcEEEEec----CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcC
Q 007119 315 QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (617)
Q Consensus 315 ~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (617)
.+.++..|+++++.. .+....++.+....++.+..+|.......
T Consensus 225 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 272 (514)
T d1amua_ 225 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD-------------------------------- 272 (514)
T ss_dssp HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC--------------------------------
T ss_pred ccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc--------------------------------
Confidence 888999999998875 57778888999999999999886543210
Q ss_pred CCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCC---CCCCCcCC
Q 007119 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGS 467 (617)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~ 467 (617)
.....+++.+++||+++++++.+++.. ++.+++.||+||++.+++...... ...++.|.
T Consensus 273 ----------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
T d1amua_ 273 ----------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGA 334 (514)
T ss_dssp ----------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBE
T ss_pred ----------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccccccc
Confidence 111258999999999999999987765 678999999999998776544433 34567889
Q ss_pred CCcCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhccc------CCCCeeeecceEEEecCCcEEEE
Q 007119 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLKII 541 (617)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~------~~~gw~~TGDlg~~~~dG~l~i~ 541 (617)
+.++.++.+.| ++++.++.|+ .|||+|+||++++|||++++.+.+.| +.||||+|||+|++|+||+|+|+
T Consensus 335 ~~~~~~v~~~d-~~~~~~~~g~---~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~ 410 (514)
T d1amua_ 335 PIQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 410 (514)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE
T ss_pred ceeeeeEeeec-ccceecCCCC---eeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEE
Confidence 99999999999 7777778776 89999999999999999999998887 45789999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----HHHHHHHHHcCCCCChhh
Q 007119 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----DALKAWAASEGIQSLAPS 611 (617)
Q Consensus 542 gR~~d~ikl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----~~~~~~~~~~~~~~~~~~ 611 (617)
||+||+||+ +|++|+|++||++|.+||+|.||+|+|.++. +.++|+|++++ +++.++++++...+++|.
T Consensus 411 GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~p~ 486 (514)
T d1amua_ 411 GRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPS 486 (514)
T ss_dssp EEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCS
T ss_pred ecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCCHHHHHHHHHhhCCcccCce
Confidence 999999997 8999999999999999999999999998654 47899998754 689999988755455543
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.7e-64 Score=547.26 Aligned_cols=462 Identities=21% Similarity=0.264 Sum_probs=379.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007119 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (617)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (617)
.|+.++|+++|+++||++|+.+. + +.+||+||+++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 69999999999999999999863 3 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHH-----HHhhccCCCCceEEEEECCCCCCCCCCCccCCceE
Q 007119 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (617)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 233 (617)
+++|+++||+++.++.+++.++|+++++++++++...... ........+.+...+...... ..
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence 9999999999999999999999999999999998643321 111111233333333332211 11
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 007119 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (617)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (617)
..++++ ...+...++..++|+++|+|||||||.||||++||+++...+......+.+.++|++++.+|++|.+++.
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~ 239 (536)
T d1mdba_ 164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239 (536)
T ss_dssp EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccccee
Confidence 222222 1222344567789999999999999999999999999999999888888999999999999999999986
Q ss_pred H-HH-HHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhcC
Q 007119 314 N-QV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (617)
Q Consensus 314 ~-~~-~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (617)
. .+ ..+..|.+++..+ +++..++..+++++++.+..+|..+..+.......
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 293 (536)
T d1mdba_ 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------- 293 (536)
T ss_dssp SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------------
T ss_pred eccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc--------------------------
Confidence 5 33 3455567776665 79999999999999999999999988876532211
Q ss_pred CCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCC-CCCCCCcCCCC
Q 007119 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPN 469 (617)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~ 469 (617)
....+++|.+++||+++++...+++.+.++......||.+|.+......... ....+++|.|+
T Consensus 294 ----------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~ 357 (536)
T d1mdba_ 294 ----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357 (536)
T ss_dssp ----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred ----------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence 1112589999999999999999999999999999999999987655543322 24567899998
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeCccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCeee
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik 549 (617)
++....+++.++++.++.++ .|||+++|+.++.||+++++.+...++.+|||+|||+|++|+||+|+++||+||+||
T Consensus 358 ~~~~~~~v~~~~g~~~~~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~ 434 (536)
T d1mdba_ 358 SPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434 (536)
T ss_dssp STTCEEEEECTTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred CCcceEEEEcCCCCeecccc---cceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEE
Confidence 76666666557777777776 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHcCCC-CChhh
Q 007119 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASEGIQ-SLAPS 611 (617)
Q Consensus 550 l~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~~~~~~~~~~~~-~~~~~ 611 (617)
+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++ ++++++++++++.++ +++|.
T Consensus 435 ~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~~l~~~~~P~ 504 (536)
T d1mdba_ 435 R-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPD 504 (536)
T ss_dssp C-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCS
T ss_pred E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHHHHHHhcCCCcCcCcc
Confidence 6 8999999999999999999999999997643 468899986 457899999987654 56654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=7.3e-60 Score=509.56 Aligned_cols=458 Identities=19% Similarity=0.214 Sum_probs=367.5
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCccCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007119 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (617)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (617)
++|++++|+++++++||++|+.+. ++. +++||+||.+++.++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 479999999999999999999875 332 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccccEEEecccchHHHHhhccCCCCceEEEEECCCCCCCCCCCccCCceEeeHH
Q 007119 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (617)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 237 (617)
|+++|++++||++.++++++.+++++++++++|++..... ........... .++ .+.
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~i---------------------~~~ 130 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGA-RII---------------------FLG 130 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCC-EEE---------------------EHH
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhcccc-ccc---------------------cch
Confidence 9999999999999999999999999999999999875322 12222222222 222 233
Q ss_pred HHHhcCc----cCCCCCCCCCCCCeEEEEeccCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHH
Q 007119 238 NLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYE 311 (617)
Q Consensus 238 ~l~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~ 311 (617)
++...+. ..+.......++++++|+|||||||.||+|+++|+++.+.+...... ......+++++.+|++|.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (503)
T d3cw9a1 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210 (503)
T ss_dssp HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHH
T ss_pred hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccc
Confidence 3322221 11223345678999999999999999999999999999888776654 34566789999999998888
Q ss_pred HHH-HHHHHHhCcEEEEec-CChhhHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhc
Q 007119 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (617)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (617)
... .+.+...++.+++.+ +++..+...+..++++.+..+|..+..+........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 266 (503)
T d3cw9a1 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------ 266 (503)
T ss_dssp HHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC------------------------
T ss_pred cccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccc------------------------
Confidence 776 455666777777665 899999999999999999999999887765322111
Q ss_pred CCCCCchhhHHhHHHHHHhhCCceEEEEEcCCCCcHHHHHHHHHhhCCceeccccccccccccccCCCCCCCCCCcCCCC
Q 007119 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (617)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (617)
+....++||.+++||+++++++..++...++..+.+.||+||++..+...........+.+.+.
T Consensus 267 ----------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~ 330 (503)
T d3cw9a1 267 ----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330 (503)
T ss_dssp ----------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTC
T ss_pred ----------------ccccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 1112258999999999999999999999999999999999999887776655554444555555
Q ss_pred cCeEEEEeecCCCCCCCCCCCCCcceEEEeC-ccccccccCChhhhhcccCCCCeeeecceEEEecCCcEEEEecCCCee
Q 007119 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG-PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (617)
Q Consensus 470 ~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g-~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~i 548 (617)
+.....+.+ ..+..++.|+ .|++++++ +....||+++++.|++.| .||||+|||+|++|+||+|+++||+||+|
T Consensus 331 ~~~~~~~~~-~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~i 405 (503)
T d3cw9a1 331 EVRIVRIGG-GVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (503)
T ss_dssp CEEEECTTS-CTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred cceeeeeec-ccCcccCCCc---cccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeE
Confidence 554444443 4555556665 78777765 556778999999999999 78999999999999999999999999999
Q ss_pred ecCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCC-CChhh
Q 007119 549 KLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQ-SLAPS 611 (617)
Q Consensus 549 kl~~G~~i~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~~~~~~~~~~~~-~~~~~ 611 (617)
|+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ ++++.++++...++ +++|+
T Consensus 406 k~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~ 477 (503)
T d3cw9a1 406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPK 477 (503)
T ss_dssp EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCS
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCcc
Confidence 97 8999999999999999999999999997654 4799999874 58899999765444 55554
|